Query 032592
Match_columns 137
No_of_seqs 111 out of 1064
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 03:27:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032592.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032592hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02931 nucleoside diphosphat 100.0 3.5E-37 7.5E-42 232.1 14.0 127 8-134 9-135 (177)
2 PRK14542 nucleoside diphosphat 100.0 1.3E-36 2.7E-41 221.1 12.1 104 28-134 1-104 (137)
3 cd04415 NDPk7A Nucleoside diph 100.0 1.6E-36 3.5E-41 219.0 11.7 104 29-134 1-104 (131)
4 COG0105 Ndk Nucleoside diphosp 100.0 1.7E-36 3.8E-41 216.6 10.2 103 28-133 2-104 (135)
5 PRK14541 nucleoside diphosphat 100.0 4.7E-36 1E-40 218.8 12.0 104 28-134 1-104 (140)
6 cd04412 NDPk7B Nucleoside diph 100.0 1E-35 2.3E-40 215.4 12.4 106 29-134 1-107 (134)
7 PRK14545 nucleoside diphosphat 100.0 8.2E-36 1.8E-40 217.3 11.7 104 28-134 3-106 (139)
8 cd04418 NDPk5 Nucleoside dipho 100.0 8.5E-36 1.8E-40 215.4 11.7 104 29-134 1-104 (132)
9 PTZ00093 nucleoside diphosphat 100.0 1.2E-35 2.5E-40 218.7 12.0 104 28-134 2-105 (149)
10 PRK14540 nucleoside diphosphat 100.0 1.4E-35 3E-40 214.9 12.0 104 28-134 2-105 (134)
11 cd00595 NDPk Nucleoside diphos 100.0 1.7E-35 3.7E-40 213.7 11.6 106 29-134 1-106 (133)
12 cd04414 NDPk6 Nucleoside dipho 100.0 3.1E-35 6.7E-40 213.2 12.0 106 29-134 1-107 (135)
13 cd04416 NDPk_TX NDP kinase dom 100.0 2E-35 4.4E-40 213.3 10.8 105 29-134 1-105 (132)
14 PRK00668 ndk mulitfunctional n 100.0 9.2E-35 2E-39 210.4 11.3 104 28-134 1-104 (134)
15 cd04413 NDPk_I Nucleoside diph 100.0 1.1E-34 2.3E-39 209.1 11.3 103 29-134 1-103 (130)
16 PRK14543 nucleoside diphosphat 100.0 1.9E-34 4E-39 215.9 11.3 106 26-134 3-113 (169)
17 PLN02619 nucleoside-diphosphat 100.0 1.6E-34 3.4E-39 225.1 11.0 107 25-134 85-191 (238)
18 PF00334 NDK: Nucleoside dipho 100.0 7.8E-34 1.7E-38 205.1 8.9 103 29-134 1-103 (135)
19 smart00562 NDK These are enzym 100.0 3.9E-33 8.5E-38 201.6 11.5 103 29-134 1-103 (135)
20 PRK14544 nucleoside diphosphat 100.0 4.4E-32 9.6E-37 205.2 11.6 105 27-134 2-139 (183)
21 KOG0888 Nucleoside diphosphate 100.0 3.7E-32 8.1E-37 200.5 6.4 107 28-134 5-111 (156)
22 COG1799 Uncharacterized protei 70.1 14 0.0003 27.8 5.3 51 27-81 71-121 (167)
23 PF14454 Prok_Ub: Prokaryotic 60.1 7.5 0.00016 24.8 1.9 28 66-98 23-50 (65)
24 TIGR03738 PRTRC_C PRTRC system 58.2 4.9 0.00011 25.7 0.8 28 66-98 22-49 (66)
25 PF07576 BRAP2: BRCA1-associat 57.0 29 0.00063 24.2 4.6 31 68-103 63-93 (110)
26 cd04823 ALAD_PBGS_aspartate_ri 50.9 49 0.0011 27.5 5.7 88 34-123 158-291 (320)
27 PF04472 DUF552: Protein of un 48.9 41 0.00088 21.3 4.0 43 32-78 1-43 (73)
28 PRK09283 delta-aminolevulinic 48.7 19 0.0004 29.9 2.9 47 33-81 160-206 (323)
29 cd00384 ALAD_PBGS Porphobilino 47.8 15 0.00032 30.4 2.2 47 33-81 152-198 (314)
30 PRK13384 delta-aminolevulinic 42.6 22 0.00047 29.5 2.4 47 33-81 162-208 (322)
31 PRK08811 uroporphyrinogen-III 39.5 1.8E+02 0.004 22.9 7.3 51 15-69 4-54 (266)
32 KOG2794 Delta-aminolevulinic a 38.9 1.3E+02 0.0028 24.8 6.2 46 34-81 174-219 (340)
33 PF06130 PduL: Propanediol uti 38.6 21 0.00045 23.1 1.4 20 58-77 4-23 (71)
34 COG1504 Uncharacterized conser 37.5 72 0.0016 22.7 4.1 53 65-117 47-110 (121)
35 cd00550 ArsA_ATPase Oxyanion-t 34.6 81 0.0018 24.6 4.5 87 29-115 161-253 (254)
36 TIGR00640 acid_CoA_mut_C methy 32.2 1.8E+02 0.0039 20.6 5.6 38 32-72 7-45 (132)
37 PRK14165 winged helix-turn-hel 31.2 1.3E+02 0.0028 23.4 5.1 35 45-79 38-76 (217)
38 COG0113 HemB Delta-aminolevuli 29.1 55 0.0012 27.2 2.7 47 33-81 165-211 (330)
39 PF13673 Acetyltransf_10: Acet 28.5 1.6E+02 0.0036 18.8 5.8 45 30-78 67-114 (117)
40 PRK12483 threonine dehydratase 28.0 2E+02 0.0044 25.3 6.2 55 46-117 400-463 (521)
41 COG1724 Predicted RNA binding 26.5 97 0.0021 19.8 3.0 20 45-64 9-28 (66)
42 PF13788 DUF4180: Domain of un 26.5 1.2E+02 0.0026 21.3 3.8 23 41-63 54-76 (113)
43 cd04824 eu_ALAD_PBGS_cysteine_ 25.3 70 0.0015 26.6 2.7 46 34-81 157-203 (320)
44 KOG2456 Aldehyde dehydrogenase 24.2 1.2E+02 0.0027 26.3 4.0 70 32-105 134-214 (477)
45 PF04015 DUF362: Domain of unk 24.1 2.2E+02 0.0048 21.1 5.2 44 33-76 2-57 (206)
46 PF07395 Mig-14: Mig-14; Inte 24.1 1.2E+02 0.0027 24.4 3.9 62 15-78 81-146 (264)
47 PF03807 F420_oxidored: NADP o 23.1 2.1E+02 0.0045 18.1 4.4 72 43-114 8-81 (96)
48 cd04903 ACT_LSD C-terminal ACT 23.0 1.6E+02 0.0036 16.9 4.2 32 32-65 2-33 (71)
49 COG0505 CarA Carbamoylphosphat 22.5 1.3E+02 0.0027 25.6 3.8 58 43-118 188-250 (368)
50 PF04339 DUF482: Protein of un 22.3 1.5E+02 0.0033 24.9 4.3 52 50-101 193-256 (370)
51 PF07530 PRE_C2HC: Associated 22.3 1E+02 0.0022 19.4 2.5 21 46-66 2-22 (68)
52 PF06399 GFRP: GTP cyclohydrol 21.7 1.5E+02 0.0032 19.8 3.2 21 45-65 52-72 (83)
53 PRK15070 propanediol utilizati 21.3 73 0.0016 24.9 2.0 19 57-75 135-153 (211)
54 PF15206 FAM209: FAM209 family 20.8 55 0.0012 24.1 1.1 19 119-137 59-77 (150)
55 TIGR01124 ilvA_2Cterm threonin 20.1 1.8E+02 0.0039 25.4 4.4 36 84-119 400-444 (499)
56 PF03698 UPF0180: Uncharacteri 20.1 1.1E+02 0.0024 20.1 2.4 25 39-64 5-29 (80)
No 1
>PLN02931 nucleoside diphosphate kinase family protein
Probab=100.00 E-value=3.5e-37 Score=232.14 Aligned_cols=127 Identities=70% Similarity=1.081 Sum_probs=118.3
Q ss_pred HHHHHHHhcCCcCCCCCcccceEEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcCCCcHHH
Q 032592 8 LFILACISSPCRSLSNGSVEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSS 87 (137)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~e~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~ 87 (137)
+|++-.++-.-++.+...+..|+||+|||||++.++++|+|+++|+++||+|+++||++|++++|++||.+|++++||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~erTlalIKPdav~~~~~G~Il~~I~~~Gf~I~~~K~~~Lt~e~a~~fY~~h~gk~ff~~ 88 (177)
T PLN02931 9 LFLLLLASFPIRCSSSGASEEERTLAMIKPDGLSGNYTERIKEVILESGFSIVKEMTTQLDEDRASLFYAEHSSRSFFPS 88 (177)
T ss_pred HHHHHHcccccccCCCCCCcceeEEEEECchhhhcccHHHHHHHHHHCCCEEEeeeeecCCHHHHHHHHHHhCCCccHHH
Confidence 46666666566666677788899999999999988889999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCEEEEEEeeccHHHHHHHHhCCCChhhhhhcCCCCccCC
Q 032592 88 LIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHRLYVL 134 (137)
Q Consensus 88 lv~~~~sGpvv~l~l~g~naV~~~r~l~Gp~dp~~A~~~~p~slRa~ 134 (137)
++++|+|||+++|+|.|+|||++||+++||+||.+|+...|+|||+.
T Consensus 89 Lv~~mtSGP~vam~L~g~naV~~~R~liGptdp~~A~~~~P~sIRa~ 135 (177)
T PLN02931 89 LVKYMTSGPVLVMVLEKENAVSDWRTLIGPTDARKAKISHPNSIRAM 135 (177)
T ss_pred HHHHHHhCCeEEEEEecCCHHHHHHHHhCCCChhhhccCCCCCchHH
Confidence 99999999999999999999999999999999999999999999984
No 2
>PRK14542 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=1.3e-36 Score=221.09 Aligned_cols=104 Identities=40% Similarity=0.728 Sum_probs=101.2
Q ss_pred ceEEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcCCCcHHHHHHHhhcCCEEEEEEeeccH
Q 032592 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENA 107 (137)
Q Consensus 28 ~e~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvv~l~l~g~na 107 (137)
+|+||+|||||++.++++|+||++|+++||+|+++||++|++++|++||.+|++++||++|+++|+|||+++++|.|+||
T Consensus 1 ~e~Tl~iIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~k~f~~~Lv~~m~sGp~va~~l~g~na 80 (137)
T PRK14542 1 MSRTFIMIKPDGVKNKHVGNILQRIEKEGFKILGLKYLKLSLEDAKQFYKVHSARPFYNDLCNYMSSGPIVAAALERDNA 80 (137)
T ss_pred CceEEEEECcchhhcCchHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhcCCccHHHHHHHHhcCCeEEEEEeCCCH
Confidence 48999999999998889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChhhhhhcCCCCccCC
Q 032592 108 ITDWRALIGPTDAKKAKISHPHRLYVL 134 (137)
Q Consensus 108 V~~~r~l~Gp~dp~~A~~~~p~slRa~ 134 (137)
|++||+++||+||..|+ |+||||.
T Consensus 81 v~~~R~l~Gpt~p~~A~---p~siR~~ 104 (137)
T PRK14542 81 VLHWREVIGATDPKEAA---AGTIRAL 104 (137)
T ss_pred HHHHHHHhCCCCchhCC---CCCchHH
Confidence 99999999999999997 9999984
No 3
>cd04415 NDPk7A Nucleoside diphosphate kinase 7 domain A (NDPk7A): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
Probab=100.00 E-value=1.6e-36 Score=219.00 Aligned_cols=104 Identities=42% Similarity=0.823 Sum_probs=101.3
Q ss_pred eEEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcCCCcHHHHHHHhhcCCEEEEEEeeccHH
Q 032592 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAI 108 (137)
Q Consensus 29 e~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvv~l~l~g~naV 108 (137)
|+||+|||||++.+ +|+||++|+++||.|+++||++|++++|++||.+|++++||++|+++|+|||+++|+|.|+|+|
T Consensus 1 erTl~iIKPdav~~--~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~y~~~~gk~f~~~Lv~~m~sgp~va~~l~g~nav 78 (131)
T cd04415 1 EKTLALIKPDAYSK--IGKIIQIIEDAGFTITKAKMTKLSRKEAQDFYAEHQSKPFYNELVQFMTSGPIVAMELVGDDAI 78 (131)
T ss_pred CeEEEEECcHHHHh--HHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCCchHHHHHHHhcCCeEEEEEECCcHH
Confidence 68999999999974 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCChhhhhhcCCCCccCC
Q 032592 109 TDWRALIGPTDAKKAKISHPHRLYVL 134 (137)
Q Consensus 109 ~~~r~l~Gp~dp~~A~~~~p~slRa~ 134 (137)
++||+++||+||..|+...|+|||+.
T Consensus 79 ~~~R~l~Gpt~p~~A~~~~p~siR~~ 104 (131)
T cd04415 79 SEWRKLLGPTNSSVARSDAPNSIRAL 104 (131)
T ss_pred HHHHHHhCCCChHHhhccCCCcchhh
Confidence 99999999999999999999999985
No 4
>COG0105 Ndk Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.7e-36 Score=216.57 Aligned_cols=103 Identities=40% Similarity=0.646 Sum_probs=101.7
Q ss_pred ceEEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcCCCcHHHHHHHhhcCCEEEEEEeeccH
Q 032592 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENA 107 (137)
Q Consensus 28 ~e~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvv~l~l~g~na 107 (137)
.|+||+|||||+++++++|+||++++++||+|+++||+++++++|++||.+|+++|||.+|++||+|||+++++|+|+||
T Consensus 2 ~erT~~iiKPDaV~R~LIG~IisrfE~~Glkiva~K~~~~~~e~Ae~~Y~~h~~kpFf~~Lv~fitSgPvv~~VleGe~a 81 (135)
T COG0105 2 MERTLSIIKPDAVKRGLIGEIISRFEKKGLKIVALKMVQLSRELAENHYAEHKGKPFFGELVEFITSGPVVAMVLEGENA 81 (135)
T ss_pred cceEEEEECcchhhhhhHHHHHHHHHHCCCEEEeeeeeccCHHHHHHHHHHHcCCCccHHHHhheecCcEEEEEEecHhH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChhhhhhcCCCCccC
Q 032592 108 ITDWRALIGPTDAKKAKISHPHRLYV 133 (137)
Q Consensus 108 V~~~r~l~Gp~dp~~A~~~~p~slRa 133 (137)
|+.+|.++|+|||..|. |+|||+
T Consensus 82 i~~~R~l~GaTnp~~A~---pGTIRg 104 (135)
T COG0105 82 ISVVRKLMGATNPANAA---PGTIRG 104 (135)
T ss_pred HHHHHHHHCCCCcccCC---CCeEee
Confidence 99999999999999999 999997
No 5
>PRK14541 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=4.7e-36 Score=218.80 Aligned_cols=104 Identities=38% Similarity=0.676 Sum_probs=101.2
Q ss_pred ceEEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcCCCcHHHHHHHhhcCCEEEEEEeeccH
Q 032592 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENA 107 (137)
Q Consensus 28 ~e~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvv~l~l~g~na 107 (137)
.|+||+|||||++.++++|+||++|+++||.|+++||++|++++|++||.+|++++||++|+++|+|||+++|+|.|+|+
T Consensus 1 ~e~TlaiIKPdav~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~e~a~~~Y~~~~~k~ff~~Lv~~m~sgp~va~~l~g~na 80 (140)
T PRK14541 1 MERTLTILKPDCVRKQLIGAVIDKIERAGFRVVAMKKTRLTKETAGEFYAVHRERPFYGELVEFMSSGPCVPMILEKENA 80 (140)
T ss_pred CceEEEEECcchhhcCchHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHHcCCccHHHHHHHHhcCCeEEEEEecCcH
Confidence 47999999999998888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChhhhhhcCCCCccCC
Q 032592 108 ITDWRALIGPTDAKKAKISHPHRLYVL 134 (137)
Q Consensus 108 V~~~r~l~Gp~dp~~A~~~~p~slRa~ 134 (137)
|++||+++||+||.+|+ |+|||+.
T Consensus 81 v~~~R~l~Gpt~p~~A~---p~siR~~ 104 (140)
T PRK14541 81 VADFRTLIGATDPAEAA---EGTVRKL 104 (140)
T ss_pred HHHHHHHhCCCCchhCC---CCCchHH
Confidence 99999999999999997 9999984
No 6
>cd04412 NDPk7B Nucleoside diphosphate kinase 7 domain B (NDPk7B): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
Probab=100.00 E-value=1e-35 Score=215.38 Aligned_cols=106 Identities=29% Similarity=0.465 Sum_probs=103.4
Q ss_pred eEEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcCC-CcHHHHHHHhhcCCEEEEEEeeccH
Q 032592 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSR-SFFSSLIKYMTSGPVLAMVLEKENA 107 (137)
Q Consensus 29 e~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~-~~~~~lv~~~~sGpvv~l~l~g~na 107 (137)
++||+|||||++.++++|+||++|+++||.|+++||++|++++|++||.+|+++ +||++++++|+|||+++|+|.|+||
T Consensus 1 ~~Tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~~l~~~m~sGp~val~l~g~na 80 (134)
T cd04412 1 NCTVCIIKPHAVSHGLLGEILQQILDEGFEITALQMFNLTRANAEEFLEVYKGVVPELPAMVDELTSGPCIALEIAGENA 80 (134)
T ss_pred CcEEEEECchHhhcCchHHHHHHHHHCCCEEEEeEeecCCHHHHHHHHHHHcCccchHHHHHHHHhcCCeEEEEEECCcH
Confidence 589999999999988899999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHhCCCChhhhhhcCCCCccCC
Q 032592 108 ITDWRALIGPTDAKKAKISHPHRLYVL 134 (137)
Q Consensus 108 V~~~r~l~Gp~dp~~A~~~~p~slRa~ 134 (137)
|++||+++||+||..|+...|+|||+.
T Consensus 81 v~~~r~l~Gpt~p~~A~~~~p~siR~~ 107 (134)
T cd04412 81 VKTFREFCGPFDPEIAKQLRPNTLRAR 107 (134)
T ss_pred HHHHHHHhCCCChHHhcccCCCCeehh
Confidence 999999999999999999999999984
No 7
>PRK14545 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=8.2e-36 Score=217.26 Aligned_cols=104 Identities=37% Similarity=0.664 Sum_probs=101.3
Q ss_pred ceEEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcCCCcHHHHHHHhhcCCEEEEEEeeccH
Q 032592 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENA 107 (137)
Q Consensus 28 ~e~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvv~l~l~g~na 107 (137)
.|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|++++||++++++|+|||+++|+|.|+|+
T Consensus 3 ~e~Tl~iIKPdav~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~k~ff~~Lv~~m~sGp~va~~l~g~na 82 (139)
T PRK14545 3 GNRTFTMIKPDAVENGHIGGILDMITAAGFRIVAMKLTQLTVADAETFYAVHAERPFYGELVEFMSRGPIVAAILEKENA 82 (139)
T ss_pred cceEEEEECchhhhcCcHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCCchHHHHHHHhcCCEEEEEEecCCH
Confidence 58999999999998888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChhhhhhcCCCCccCC
Q 032592 108 ITDWRALIGPTDAKKAKISHPHRLYVL 134 (137)
Q Consensus 108 V~~~r~l~Gp~dp~~A~~~~p~slRa~ 134 (137)
|++||+++||+||++|+ |+|||+.
T Consensus 83 v~~~R~l~Gpt~p~~A~---p~siR~~ 106 (139)
T PRK14545 83 VEDFRTLIGATNPADAA---EGTIRKK 106 (139)
T ss_pred HHHHHHHhCCCCcccCC---CCChhHH
Confidence 99999999999999996 9999984
No 8
>cd04418 NDPk5 Nucleoside diphosphate kinase homolog 5 (NDP kinase homolog 5, NDPk5, NM23-H5; Inhibitor of p53-induced apoptosis-beta, IPIA-beta): In human, mRNA for NDPk5 is almost exclusively found in testis, especially in the flagella of spermatids and spermatozoa, in association with axoneme microtubules, and may play a role in spermatogenesis by increasing the ability of late-stage spermatids to eliminate reactive oxygen species. It belongs to the nm23 Group II genes and appears to differ from the other human NDPks in that it lacks two important catalytic site residues, and thus does not appear to possess NDP kinase activity. NDPk5 confers protection from cell death by Bax and alters the cellular levels of several antioxidant enzymes, including glutathione peroxidase 5 (Gpx5).
Probab=100.00 E-value=8.5e-36 Score=215.43 Aligned_cols=104 Identities=48% Similarity=0.898 Sum_probs=101.1
Q ss_pred eEEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcCCCcHHHHHHHhhcCCEEEEEEeeccHH
Q 032592 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAI 108 (137)
Q Consensus 29 e~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvv~l~l~g~naV 108 (137)
|+||+|||||++.+ +|+||++|+++||+|+++||++||+++|++||.+|++++||++|+++|++||+++|+|.|+|+|
T Consensus 1 e~Tl~iIKPda~~~--~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~Lv~~m~sgp~val~l~g~~aV 78 (132)
T cd04418 1 ERTLAIIKPDAVHK--AEEIEDIILESGFTIVQKRKLQLSPEQCSDFYAEHYGKMFFPHLVAYMSSGPIVAMVLARHNAI 78 (132)
T ss_pred CeEEEEECcHHHhh--HHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCccHHHHHHHHhcCCeEEEEEecCCHH
Confidence 68999999999975 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCChhhhhhcCCCCccCC
Q 032592 109 TDWRALIGPTDAKKAKISHPHRLYVL 134 (137)
Q Consensus 109 ~~~r~l~Gp~dp~~A~~~~p~slRa~ 134 (137)
++||+++||+||+.|+...|+|||+.
T Consensus 79 ~~~R~l~Gpt~p~~A~~~~p~siR~~ 104 (132)
T cd04418 79 SYWKELLGPTNSLKAKETHPDSLRAI 104 (132)
T ss_pred HHHHHHHCCCChHHhccCCCCChHHh
Confidence 99999999999999999999999974
No 9
>PTZ00093 nucleoside diphosphate kinase, cytosolic; Provisional
Probab=100.00 E-value=1.2e-35 Score=218.73 Aligned_cols=104 Identities=32% Similarity=0.589 Sum_probs=100.9
Q ss_pred ceEEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcCCCcHHHHHHHhhcCCEEEEEEeeccH
Q 032592 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENA 107 (137)
Q Consensus 28 ~e~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvv~l~l~g~na 107 (137)
.|+||+|||||++.++++|+||++|+++||.|+++||++|++++|++||.+|++++||++|+++|+|||++++++.|+|+
T Consensus 2 ~e~Tl~lIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~~~a~~fY~~~~gk~ff~~Lv~~m~sGp~val~l~g~na 81 (149)
T PTZ00093 2 SERTFIMVKPDGVQRGLVGEIIKRFEKKGYKLVALKMLQPTPEIAEEHYKEHKGKPFFPGLVKYISSGPVVCMVWEGKNV 81 (149)
T ss_pred CceEEEEECcchhhcCchHHHHHHHHHCCCEEEEeEeecCCHHHHHHHHHHhcCCchHHHHHHHHhcCCEEEEEEeCCCH
Confidence 58999999999998888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChhhhhhcCCCCccCC
Q 032592 108 ITDWRALIGPTDAKKAKISHPHRLYVL 134 (137)
Q Consensus 108 V~~~r~l~Gp~dp~~A~~~~p~slRa~ 134 (137)
|++||+++||+||.+|. |+||||.
T Consensus 82 v~~~R~l~Gpt~p~~a~---p~siR~~ 105 (149)
T PTZ00093 82 VKQGRKLLGATNPLESA---PGTIRGD 105 (149)
T ss_pred HHHHHHHhCCCCccccC---CCcchhh
Confidence 99999999999999885 9999984
No 10
>PRK14540 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=1.4e-35 Score=214.89 Aligned_cols=104 Identities=35% Similarity=0.625 Sum_probs=101.0
Q ss_pred ceEEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcCCCcHHHHHHHhhcCCEEEEEEeeccH
Q 032592 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENA 107 (137)
Q Consensus 28 ~e~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvv~l~l~g~na 107 (137)
.|+||+|||||++.++++|+||++|+++||.|+++||++|++++|++||.+|++++||+.|+++|+|||+++|++.|+|+
T Consensus 2 ~e~Tl~lIKPda~~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~k~f~~~L~~~m~sgp~val~l~g~na 81 (134)
T PRK14540 2 KERTFVALKPDAVERKLIGKIIQRFENKGFEIVEMKMLKLTREMAEEYYEEHKGKEFYERLINFMTSGRIVAMVIEGENA 81 (134)
T ss_pred ceeEEEEECcchhhcCchHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhCCCccHHHHHHHHccCCeEEEEEeCCCh
Confidence 58999999999998888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChhhhhhcCCCCccCC
Q 032592 108 ITDWRALIGPTDAKKAKISHPHRLYVL 134 (137)
Q Consensus 108 V~~~r~l~Gp~dp~~A~~~~p~slRa~ 134 (137)
|++||+++||+||+.|. |+|||+.
T Consensus 82 v~~~R~l~Gpt~p~~a~---p~siR~~ 105 (134)
T PRK14540 82 ISTVRKMIGKTNPAEAE---PGTIRGD 105 (134)
T ss_pred HHHHHHHhCCCCcccCC---CCcchhh
Confidence 99999999999999885 9999984
No 11
>cd00595 NDPk Nucleoside diphosphate kinases (NDP kinases, NDPks): NDP kinases, responsible for the synthesis of nucleoside triphosphates (NTPs), are involved in numerous regulatory processes associated with proliferation, development, and differentiation. They are vital for DNA/RNA synthesis, cell division, macromolecular metabolism and growth. The enzymes generate NTPs or their deoxy derivatives by terminal (gamma) phosphotransfer from an NTP such as ATP or GTP to any nucleoside diphosphate (NDP) or its deoxy derivative. The sequence of NDPk has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism. The first confirmed metastasis suppressor gene was the NDP kinase protein encoded by the nm23 gene. Unicellular organisms generally possess only one gene encoding NDP kinase, while most multicellular organisms possess not only an ortholog that provides most of the NDP kinase enzymatic a
Probab=100.00 E-value=1.7e-35 Score=213.70 Aligned_cols=106 Identities=42% Similarity=0.776 Sum_probs=103.5
Q ss_pred eEEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcCCCcHHHHHHHhhcCCEEEEEEeeccHH
Q 032592 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAI 108 (137)
Q Consensus 29 e~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvv~l~l~g~naV 108 (137)
|+||+|||||++.++++|+||++|+++||.|+++||++|++++|++||.+|++++||++++++|++||+++|+|.|+|+|
T Consensus 1 e~tl~iIKPd~~~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~~~~~~~lv~~m~sGp~v~l~l~g~~av 80 (133)
T cd00595 1 ERTLALIKPDAVAEGLLGEIIMRIEDAGFEIVAMKELHLTEEQAEEFYVEHKGRPFFPDLVQFMSSGPVVAMILEKDNAV 80 (133)
T ss_pred CcEEEEECchHHhcCcHHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhcCCchHHHHHHHHhcCCeEEEEEecCChH
Confidence 68999999999988889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCChhhhhhcCCCCccCC
Q 032592 109 TDWRALIGPTDAKKAKISHPHRLYVL 134 (137)
Q Consensus 109 ~~~r~l~Gp~dp~~A~~~~p~slRa~ 134 (137)
++||+++||+||+.|+...|+|||+.
T Consensus 81 ~~~r~l~Gp~~p~~a~~~~p~siR~~ 106 (133)
T cd00595 81 GEWREMLGPTNPEIARHLAPGSLRAD 106 (133)
T ss_pred HHHHHHhCCCChhHhccCCCCChHHH
Confidence 99999999999999999999999984
No 12
>cd04414 NDPk6 Nucleoside diphosphate kinase 6 (NDP kinase 6, NDPk6, NM23-H6; NME6; Inhibitor of p53-induced apoptosis-alpha, IPIA-alpha): The nm23-H6 gene encoding NDPk6 is expressed mainly in mitochondria, but also found at a lower level in most tissues. NDPk6 has all nine residues considered crucial for enzyme structure and activity, and has been found to have NDP kinase activity. It may play a role in cell growth and cell cycle progression. The nm23-H6 gene locus has been implicated in a variety of malignant tumors.
Probab=100.00 E-value=3.1e-35 Score=213.23 Aligned_cols=106 Identities=42% Similarity=0.795 Sum_probs=100.9
Q ss_pred eEEEEEEcCCccCCCch-HHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcCCCcHHHHHHHhhcCCEEEEEEeeccH
Q 032592 29 EKTLAMIKPDGLSGNYT-DEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENA 107 (137)
Q Consensus 29 e~tlvlIKPda~~~~~~-g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvv~l~l~g~na 107 (137)
|+||+|||||++.++++ |.|++.|+++||.|+++||++||+++|++||.+|++++||++|+++|++||+++|+|.|+||
T Consensus 1 e~Tl~lIKPda~~~~~~~~~I~~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~~~f~~~Lv~~m~sgp~val~l~~~na 80 (135)
T cd04414 1 QLTLALIKPDAVAHPLALEAVRQLILSNGFTIVRKKELRWTTEDAERFYAEHKGKFFYDRLVSFMTSGPSWALILAHENA 80 (135)
T ss_pred CeEEEEECchHHhCCchHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCCchHHHHHHHhcCCeEEEEEEcCCH
Confidence 68999999999988766 56777788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChhhhhhcCCCCccCC
Q 032592 108 ITDWRALIGPTDAKKAKISHPHRLYVL 134 (137)
Q Consensus 108 V~~~r~l~Gp~dp~~A~~~~p~slRa~ 134 (137)
|++||+++||+||..|+...|+|||+.
T Consensus 81 V~~~r~l~Gp~~p~~A~~~~p~siR~~ 107 (135)
T cd04414 81 IKTWRALMGPTKVFRARASAPDSIRGL 107 (135)
T ss_pred HHHHHHHhCCCChhHhccCCCCCcHHH
Confidence 999999999999999999999999985
No 13
>cd04416 NDPk_TX NDP kinase domain of thioredoxin domain-containing proteins (TXNDC3 and TXNDC6): Txl-2 (TXNDC6) and Sptrx-2 (TXNDC3) are fusion proteins of Group II N-terminal thioredoxin domains followed by one or three NDP kinase domains, respectively. Sptrx-2, which has a tissue specific distribution in human testis, has been considered as a member of the nm23 family (nm23-H8) and exhibits a high homology with sea urchin IC1 (intermediate chain-1) protein, a component of the sperm axonemal outer dynein arm complex. Txl-2 is mainly represented in close association with microtubules within tissues with cilia and flagella such as seminiferous epithelium (spermatids) and lung airway epithelium, suggesting possible role in control of microtubule stability and maintenance.
Probab=100.00 E-value=2e-35 Score=213.26 Aligned_cols=105 Identities=47% Similarity=0.809 Sum_probs=102.2
Q ss_pred eEEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcCCCcHHHHHHHhhcCCEEEEEEeeccHH
Q 032592 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAI 108 (137)
Q Consensus 29 e~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvv~l~l~g~naV 108 (137)
|+||+|||||++.+ ++|+|+++|+++||.|+++||++|++++|++||.+|++++||++++++|+|||+++|+|.|+|+|
T Consensus 1 e~Tl~iIKPdav~~-~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~fY~~~~~~~~~~~lv~~m~sgp~v~l~l~~~~av 79 (132)
T cd04416 1 EYTLALIKPDAVAE-KKDEILEKIKEAGFEILAQKEMVLTEEQAREFYKEHEEEDYFEDLVEFMTSGPSLILVLSKENAV 79 (132)
T ss_pred CeEEEEEChHHHHH-HHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhcCCccHHHHHHHHhcCCeEEEEEeCCCHH
Confidence 68999999999976 78999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCChhhhhhcCCCCccCC
Q 032592 109 TDWRALIGPTDAKKAKISHPHRLYVL 134 (137)
Q Consensus 109 ~~~r~l~Gp~dp~~A~~~~p~slRa~ 134 (137)
++||+++||+||..|+...|+|||+.
T Consensus 80 ~~~r~l~Gp~~p~~A~~~~p~slR~~ 105 (132)
T cd04416 80 EEWRELMGPTDPEEAKEEKPDSLRAQ 105 (132)
T ss_pred HHHHHHhCCCChHHhhccCCCChHHH
Confidence 99999999999999999999999984
No 14
>PRK00668 ndk mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated
Probab=100.00 E-value=9.2e-35 Score=210.37 Aligned_cols=104 Identities=38% Similarity=0.619 Sum_probs=100.4
Q ss_pred ceEEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcCCCcHHHHHHHhhcCCEEEEEEeeccH
Q 032592 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENA 107 (137)
Q Consensus 28 ~e~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvv~l~l~g~na 107 (137)
.|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|++++||++++++|++||+++|+|.|+|+
T Consensus 1 ~e~Tl~iIKPd~~~~~~~g~Il~~i~~~Gf~I~~~k~~~ls~~~a~~fy~~~~~k~f~~~Lv~~m~sgp~~al~l~g~na 80 (134)
T PRK00668 1 MERTFSIIKPDAVQRGLIGEIISRFEKKGLKIVALKMMQLSRELAEGHYAEHKEKPFFGELVEFMTSGPVVVMVLEGENA 80 (134)
T ss_pred CceEEEEECchHhhcCcHHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhcCCchHHHHHHHhccCCeEEEEEeCchH
Confidence 47999999999998888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChhhhhhcCCCCccCC
Q 032592 108 ITDWRALIGPTDAKKAKISHPHRLYVL 134 (137)
Q Consensus 108 V~~~r~l~Gp~dp~~A~~~~p~slRa~ 134 (137)
|++||+++||+||.++. |+|||+.
T Consensus 81 v~~~r~l~Gp~~p~~a~---p~siR~~ 104 (134)
T PRK00668 81 IAKVRELMGATNPAEAA---PGTIRGD 104 (134)
T ss_pred HHHHHHHhCCCCccccC---CCcchhh
Confidence 99999999999998775 9999985
No 15
>cd04413 NDPk_I Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside triphosphate (NTP) donor onto a nucleoside diphosphate (NDP) acceptor through a phosphohistidine intermediate. The mammalian nm23/NDP kinase gene family can be divided into two distinct groups. The group I genes encode proteins that generally have highly homologous counterparts in other organisms and possess the classic enzymatic activity of a kinase. This group includes vertebrate NDP kinases A-D (Nm23- H1 to -H4), and its counterparts in bacteria, archea and other eukaryotes. NDP kinases exist in two different quaternary structures; all known eukaryotic enzymes are hexamers, while some bacterial enzymes are tetramers, as in Myxococcus. They possess the NDP kinase active site motif (NXXH[G/A]SD) and the nine residues that
Probab=100.00 E-value=1.1e-34 Score=209.09 Aligned_cols=103 Identities=41% Similarity=0.660 Sum_probs=99.7
Q ss_pred eEEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcCCCcHHHHHHHhhcCCEEEEEEeeccHH
Q 032592 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAI 108 (137)
Q Consensus 29 e~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvv~l~l~g~naV 108 (137)
|+||+|||||++.++++|+||++|.++||.|+++||++|++++|++||.+|++++||++++++|+|||+++|++.|+|+|
T Consensus 1 e~Tl~lIKPda~~~~~~g~Il~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~k~~~~~l~~~m~sgp~~al~l~~~nav 80 (130)
T cd04413 1 ERTLVIIKPDGVQRGLIGEIISRFERKGLKIVALKMLQLTEELAEEHYAEHKGKPFFPELVEFMTSGPVVAMVLEGENAV 80 (130)
T ss_pred CeeEEEECchHhhcCcHHHHHHHHHHCCCEEEEeeeccCCHHHHHHHhhhhcCCchHHHHHHHHhcCCEEEEEEeCCcHH
Confidence 68999999999988889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCChhhhhhcCCCCccCC
Q 032592 109 TDWRALIGPTDAKKAKISHPHRLYVL 134 (137)
Q Consensus 109 ~~~r~l~Gp~dp~~A~~~~p~slRa~ 134 (137)
++||+++||+||+.|. |+|||+.
T Consensus 81 ~~~r~l~Gp~~~~~a~---p~slR~~ 103 (130)
T cd04413 81 KTVRKLMGATNPADAA---PGTIRGD 103 (130)
T ss_pred HHHHHHhCCCCccccC---CCCchhh
Confidence 9999999999999775 9999985
No 16
>PRK14543 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=1.9e-34 Score=215.91 Aligned_cols=106 Identities=26% Similarity=0.423 Sum_probs=101.5
Q ss_pred ccceEEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHH-----HhcCCCcHHHHHHHhhcCCEEEE
Q 032592 26 VEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYA-----EHSSRSFFSSLIKYMTSGPVLAM 100 (137)
Q Consensus 26 ~~~e~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~-----~~~~~~~~~~lv~~~~sGpvv~l 100 (137)
...|+||+|||||++.++++|+||++|+++||+|+++||++|++++|++||. +|++++||++|+++|+|||+++|
T Consensus 3 ~~~e~Tl~iIKPDav~~~~~G~Ii~~ie~~Gf~I~~~k~~~lt~e~a~~fY~~~~~~~h~gk~ff~~Lv~~mtsGP~val 82 (169)
T PRK14543 3 TLIQKTLCIIKPDGVRRGLIGNVVSRFERVGLKIVAAKMLLVDRSMAEKHYLYDDIAVRHGEAVWKSLIKFISSSPVFVF 82 (169)
T ss_pred CccceEEEEECcchhhcCchHHHHHHHHHCCCEEEeeeeccCCHHHHHHHhccCccccccCCchHHHHHHHHccCCeEEE
Confidence 4579999999999999899999999999999999999999999999999995 78999999999999999999999
Q ss_pred EEeeccHHHHHHHHhCCCChhhhhhcCCCCccCC
Q 032592 101 VLEKENAITDWRALIGPTDAKKAKISHPHRLYVL 134 (137)
Q Consensus 101 ~l~g~naV~~~r~l~Gp~dp~~A~~~~p~slRa~ 134 (137)
+|.|+|+|++||+++|||||..|. |+|||+.
T Consensus 83 vl~g~naI~~~R~l~Gpt~p~~a~---p~tIR~~ 113 (169)
T PRK14543 83 VVEGVESVEVVRKFCGSTEPKLAI---PGTIRGD 113 (169)
T ss_pred EEECCCHHHHHHHHhCCCCccccC---CCcchhh
Confidence 999999999999999999998886 9999985
No 17
>PLN02619 nucleoside-diphosphate kinase
Probab=100.00 E-value=1.6e-34 Score=225.13 Aligned_cols=107 Identities=36% Similarity=0.547 Sum_probs=103.1
Q ss_pred cccceEEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcCCCcHHHHHHHhhcCCEEEEEEee
Q 032592 25 SVEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEK 104 (137)
Q Consensus 25 ~~~~e~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvv~l~l~g 104 (137)
+...|+||+|||||++.++++|+||++|+++||+|+++||+++++++|++||.+|++++||++|+++|++||+++|+|.|
T Consensus 85 a~~~ErTlaiIKPDaV~rglvGeII~rIe~~Gf~Iva~Kmv~Lt~e~AeefY~ehkgKpFf~~Lv~fMtSGPvvamvL~G 164 (238)
T PLN02619 85 AAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKVVVPSKEFAQKHYHDLKERPFFNGLCDFLSSGPVVAMVWEG 164 (238)
T ss_pred cchhceEEEEECcchhhcCchHHHHHHHHHCCCEEEehhhccCCHHHHHHHHHHhcCCCcHHHHHHHHhcCCeEEEEEEC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHhCCCChhhhhhcCCCCccCC
Q 032592 105 ENAITDWRALIGPTDAKKAKISHPHRLYVL 134 (137)
Q Consensus 105 ~naV~~~r~l~Gp~dp~~A~~~~p~slRa~ 134 (137)
+|+|++||+++|||||.++. |+|||+.
T Consensus 165 enaV~~~R~LiGpTdP~~A~---PgTIRg~ 191 (238)
T PLN02619 165 EGVIKYGRKLIGATDPQKSE---PGTIRGD 191 (238)
T ss_pred CcHHHHHHHHhCCCCccccC---CCcchhh
Confidence 99999999999999999876 9999984
No 18
>PF00334 NDK: Nucleoside diphosphate kinase; InterPro: IPR001564 Nucleoside diphosphate kinases (2.7.4.6 from EC) (NDK) are enzymes required for the synthesis of nucleoside triphosphates (NTP) other than ATP. They provide NTPs for nucleic acid synthesis, CTP for lipid synthesis, UTP for polysaccharide synthesis and GTP for protein elongation, signal transduction and microtubule polymerisation. In eukaryotes, there seems to be a small family of NDK isozymes each of which acts in a different subcellular compartment and/or has a distinct biological function. Eukaryotic NDK isozymes are hexamers of two highly related chains (A and B) []. By random association (A6, A5B...AB5, B6), these two kinds of chain form isoenzymes differing in their isoelectric point. NDK are proteins of 17 Kd that act via a ping-pong mechanism in which a histidine residue is phosphorylated, by transfer of the terminal phosphate group from ATP. In the presence of magnesium, the phosphoenzyme can transfer its phosphate group to any NDP, to produce an NTP. NDK isozymes have been sequenced from prokaryotic and eukaryotic sources. It has also been shown [] that the Drosophila awd (abnormal wing discs) protein, is a microtubule-associated NDK. Mammalian NDK is also known as metastasis inhibition factor nm23. The sequence of NDK has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism []. Our signature pattern contains this residue.; GO: 0004550 nucleoside diphosphate kinase activity, 0005524 ATP binding, 0006165 nucleoside diphosphate phosphorylation, 0006183 GTP biosynthetic process, 0006228 UTP biosynthetic process, 0006241 CTP biosynthetic process; PDB: 1S5Z_F 1NSP_A 1BUX_B 1HHQ_A 3FKB_A 1HLW_A 1LWX_B 1HIY_B 1B99_D 1MN9_A ....
Probab=100.00 E-value=7.8e-34 Score=205.11 Aligned_cols=103 Identities=44% Similarity=0.798 Sum_probs=95.4
Q ss_pred eEEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcCCCcHHHHHHHhhcCCEEEEEEeeccHH
Q 032592 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAI 108 (137)
Q Consensus 29 e~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvv~l~l~g~naV 108 (137)
|+||+|||||++.++++|+||++|+++||.|+++||+++++++|++||..++++++|+.++++|++||+++|++.|+|||
T Consensus 1 E~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~lv~~m~sgp~v~l~l~g~~av 80 (135)
T PF00334_consen 1 ERTLALIKPDAVARGHAGEIIDRLEEAGFEIVAMKMVQLTREEAREFYEEHKGKPFFDALVDFMSSGPSVALVLEGENAV 80 (135)
T ss_dssp EEEEEEE-HHHHHTT-HHHHHHHHHHHT-EEEEEEEEEETHHHHHHHTGGGTTSTTHHHHHHHHTSSEEEEEEEESTTHH
T ss_pred CeEEEEEChhHhhccchHHHHHHHHHcCCeeeehhhhhhhHHHHheEEEeecCCcceecccceeecCCcEEEEeecchhh
Confidence 79999999999998889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCChhhhhhcCCCCccCC
Q 032592 109 TDWRALIGPTDAKKAKISHPHRLYVL 134 (137)
Q Consensus 109 ~~~r~l~Gp~dp~~A~~~~p~slRa~ 134 (137)
++||+++||+||++|. |+|||+.
T Consensus 81 ~~~r~l~Gp~dp~~a~---p~slR~~ 103 (135)
T PF00334_consen 81 EKWRQLCGPTDPEEAA---PGSLRAR 103 (135)
T ss_dssp HHHHHHH--SSGGGSS---TTSHHHH
T ss_pred HHHHHhcCCcchhhhc---cccchhc
Confidence 9999999999999995 9999973
No 19
>smart00562 NDK These are enzymes that catalyze nonsubstrate specific conversions of nucleoside diphosphates to nucleoside triphosphates. These enzymes play important roles in bacterial growth, signal transduction and pathogenicity.
Probab=100.00 E-value=3.9e-33 Score=201.55 Aligned_cols=103 Identities=45% Similarity=0.789 Sum_probs=99.1
Q ss_pred eEEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcCCCcHHHHHHHhhcCCEEEEEEeeccHH
Q 032592 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAI 108 (137)
Q Consensus 29 e~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvv~l~l~g~naV 108 (137)
|+||+|||||++.++++|+||++|+++||.|+++||++|++++|++||.+|.++++|++++++|++||+++|+|.|+|+|
T Consensus 1 e~tl~iIKPda~~~~~~g~Il~~i~~~gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~m~sgp~~~l~l~g~nav 80 (135)
T smart00562 1 ERTLAIIKPDAVQRGLIGEIISRFERKGFKIVAMKMLQLTEELAEEFYAEHKGKPFFNDLVEFMTSGPVVAMVLEGEDAV 80 (135)
T ss_pred CeEEEEECchhhhcccHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHhcCCchHHHHHHHhhcCCeEEEEEecCCHH
Confidence 68999999999988889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCChhhhhhcCCCCccCC
Q 032592 109 TDWRALIGPTDAKKAKISHPHRLYVL 134 (137)
Q Consensus 109 ~~~r~l~Gp~dp~~A~~~~p~slRa~ 134 (137)
++||+++||+||..+. |+|||+.
T Consensus 81 ~~~r~l~Gp~~~~~~~---p~slR~~ 103 (135)
T smart00562 81 KTWRTLMGPTDPREAA---PGTIRGD 103 (135)
T ss_pred HHHHHHhCCCChhhcC---CcchHHh
Confidence 9999999999996665 9999985
No 20
>PRK14544 nucleoside diphosphate kinase; Provisional
Probab=99.98 E-value=4.4e-32 Score=205.21 Aligned_cols=105 Identities=33% Similarity=0.546 Sum_probs=99.5
Q ss_pred cceEEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHh---------------------------
Q 032592 27 EKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEH--------------------------- 79 (137)
Q Consensus 27 ~~e~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~--------------------------- 79 (137)
..|+||+|||||++.++++|+||++|++.||+|+++||+++|+++|++||.++
T Consensus 2 ~~E~TlviIKPdav~~~~~G~Il~ri~~~Gf~I~~~Km~~lt~e~a~~fY~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 81 (183)
T PRK14544 2 PIERTLVILKPDAVKRGLVGEIISRFEKAGLKIVAMKMVKATPEQIERFYPSSEEWYRSVGNKLLKAYQELGIDPRARLG 81 (183)
T ss_pred CcceEEEEECchhhhcccHHHHHHHHHHCCCEEEEeEEecCCHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccccccc
Confidence 36899999999999888899999999999999999999999999999999954
Q ss_pred ------cCCCcHHHHHHHhhcCCEEEEEEeeccHHHHHHHHhCCCChhhhhhcCCCCccCC
Q 032592 80 ------SSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHRLYVL 134 (137)
Q Consensus 80 ------~~~~~~~~lv~~~~sGpvv~l~l~g~naV~~~r~l~Gp~dp~~A~~~~p~slRa~ 134 (137)
.+++||++|+++|+|||+++|++.|+|||++||++|||+||.+|. |+|||+.
T Consensus 82 ~~~~~~~gk~~~~~Lv~~m~Sgpvvalvl~g~naV~~~R~liGpt~p~~A~---P~TIR~~ 139 (183)
T PRK14544 82 TDDPVEVGKKVKESLVKYMTSGPIVAMVLKGNRAVEVVRKLVGPTSPHKAP---PGTIRGD 139 (183)
T ss_pred cccccccCCchhHHHHHHhccCCEEEEEEECCCHHHHHHHHhCCCCccccC---CCCchhh
Confidence 678999999999999999999999999999999999999999886 9999984
No 21
>KOG0888 consensus Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
Probab=99.97 E-value=3.7e-32 Score=200.46 Aligned_cols=107 Identities=38% Similarity=0.693 Sum_probs=105.0
Q ss_pred ceEEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcCCCcHHHHHHHhhcCCEEEEEEeeccH
Q 032592 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENA 107 (137)
Q Consensus 28 ~e~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvv~l~l~g~na 107 (137)
.|+||++||||++.++.+|+||.+++++||+|++.|+++++++++++||.++++++||+.++.||+|||++|+++.|+||
T Consensus 5 ~e~tfi~iKpd~v~~~li~~ii~r~~~~gf~i~~~k~~~~s~~~~e~~Y~~~~~~~Ff~~Lv~~m~SGPvvamv~~g~~~ 84 (156)
T KOG0888|consen 5 LERTFILIKPDGVQRGLIGEIIKRFEDKGFKIVALKLVQLSKELLEEHYSDLKSKPFFPGLVEYMSSGPVVAMVLEGDNV 84 (156)
T ss_pred hhhhhheeCcchhhhhhhHHHHHHHHHcCcchhhheeecCCHHHHHHHHHHhcCCccHHHHHHHHhcCcceehhhcCCCH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChhhhhhcCCCCccCC
Q 032592 108 ITDWRALIGPTDAKKAKISHPHRLYVL 134 (137)
Q Consensus 108 V~~~r~l~Gp~dp~~A~~~~p~slRa~ 134 (137)
|++||+++|||+|..|+...|+|||+.
T Consensus 85 V~~~r~llG~t~~~~a~~~~pgsir~~ 111 (156)
T KOG0888|consen 85 VQYWRALLGPTNPAAARAAAPGSIRGD 111 (156)
T ss_pred HHHHHHHhCCCCcccccccCCCCeeee
Confidence 999999999999999999999999984
No 22
>COG1799 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.13 E-value=14 Score=27.84 Aligned_cols=51 Identities=10% Similarity=0.216 Sum_probs=39.9
Q ss_pred cceEEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcC
Q 032592 27 EKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSS 81 (137)
Q Consensus 27 ~~e~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~ 81 (137)
....++++++|..++. +.+|.+.|.+....+.++.. |++++|++...-..|
T Consensus 71 ~~~s~iv~~ePr~yed--a~~ia~~lk~~k~Vvinl~~--m~~~qArRivDFlaG 121 (167)
T COG1799 71 QDSSKIVLLEPRKYED--AQEIADYLKNRKAVVINLQR--MDPAQARRIVDFLAG 121 (167)
T ss_pred CCceEEEEecCccHHH--HHHHHHHHhcCceEEEEeee--CCHHHHHHHHHHhcc
Confidence 4568999999999976 67899999888777777665 699999987544333
No 23
>PF14454 Prok_Ub: Prokaryotic Ubiquitin
Probab=60.05 E-value=7.5 Score=24.76 Aligned_cols=28 Identities=25% Similarity=0.551 Sum_probs=23.2
Q ss_pred ecCHHHHHhHHHHhcCCCcHHHHHHHhhcCCEE
Q 032592 66 RLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVL 98 (137)
Q Consensus 66 ~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvv 98 (137)
.+++++++.||+.. |+.|...--.||.+
T Consensus 23 ~~spe~V~~~ya~~-----YPeL~tA~v~gP~v 50 (65)
T PF14454_consen 23 SLSPEEVRDFYAAQ-----YPELTTAEVEGPEV 50 (65)
T ss_pred CCCHHHHHHHHhhh-----ChhhheeeecCCeE
Confidence 47999999999875 88988877778865
No 24
>TIGR03738 PRTRC_C PRTRC system protein C. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein C.
Probab=58.20 E-value=4.9 Score=25.71 Aligned_cols=28 Identities=21% Similarity=0.625 Sum_probs=22.8
Q ss_pred ecCHHHHHhHHHHhcCCCcHHHHHHHhhcCCEE
Q 032592 66 RLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVL 98 (137)
Q Consensus 66 ~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvv 98 (137)
.+|+++.++||+.. |+.|...--+||.+
T Consensus 22 ~~spe~V~dfYs~~-----YPeLttA~v~gP~~ 49 (66)
T TIGR03738 22 AMSPEQVRDFYSAQ-----YPELLNAEVEGPVV 49 (66)
T ss_pred CCCHHHHHHHHhcc-----CchheeeeeeCCeE
Confidence 57999999999874 88888777778865
No 25
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=57.01 E-value=29 Score=24.15 Aligned_cols=31 Identities=19% Similarity=0.498 Sum_probs=21.3
Q ss_pred CHHHHHhHHHHhcCCCcHHHHHHHhhcCCEEEEEEe
Q 032592 68 DEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLE 103 (137)
Q Consensus 68 s~~~a~~~y~~~~~~~~~~~lv~~~~sGpvv~l~l~ 103 (137)
+.+.|.+||..+.|++| +.|-..-|.++-+.
T Consensus 63 ~~~~Ad~Fy~~fNGk~F-----nslEpE~ChvvfV~ 93 (110)
T PF07576_consen 63 DQESADEFYEEFNGKPF-----NSLEPETCHVVFVK 93 (110)
T ss_pred CHHHHHHHHHHhCCCcc-----CCCCCceeEEEEEE
Confidence 66789999999999987 33333345555443
No 26
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=50.87 E-value=49 Score=27.46 Aligned_cols=88 Identities=18% Similarity=0.290 Sum_probs=60.3
Q ss_pred EEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcCC----C--------------------------
Q 032592 34 MIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSR----S-------------------------- 83 (137)
Q Consensus 34 lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~----~-------------------------- 83 (137)
+|-|..+-.|+++.|-+.|.++||. ++-.+.-+..-|..||+.+++. +
T Consensus 158 iVAPSdMMDGrV~aIR~aLd~~g~~--~v~ImSYsaKyaS~fYGPFRdAa~Sap~fgDRksYQmdp~n~~eAlre~~~Di 235 (320)
T cd04823 158 IVAPSDMMDGRIGAIREALDAEGFT--NVSILSYAAKYASAFYGPFRDALGSAPRKGDKKTYQMDPANSREALREVALDI 235 (320)
T ss_pred EEEcccchhhHHHHHHHHHHHCCCC--CCceeechHHhhhhccchhHHHhcCCCCCCCccccCCCCCCHHHHHHHHHhhH
Confidence 6778877778999999999999994 4555666778889999988762 1
Q ss_pred -------------cHHHHHHHh---hcCCEEEEEEeeccHHHHHHHHhCCCChhhh
Q 032592 84 -------------FFSSLIKYM---TSGPVLAMVLEKENAITDWRALIGPTDAKKA 123 (137)
Q Consensus 84 -------------~~~~lv~~~---~sGpvv~l~l~g~naV~~~r~l~Gp~dp~~A 123 (137)
.|-+.+..+ +.=|+.+..+.|+-+-=+.-...|-.|...+
T Consensus 236 ~EGAD~lMVKPal~YLDIi~~~k~~~~lPvaaYqVSGEYaMikaAa~~G~~d~~~~ 291 (320)
T cd04823 236 AEGADMVMVKPGMPYLDIIRRVKDEFGVPTFAYQVSGEYAMLKAAAQNGWLDEDKV 291 (320)
T ss_pred HhCCCEEEEcCCchHHHHHHHHHHhcCCCEEEEEccHHHHHHHHHHHcCCCcHHHH
Confidence 122233222 2348888888888766555666666555433
No 27
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=48.88 E-value=41 Score=21.26 Aligned_cols=43 Identities=19% Similarity=0.337 Sum_probs=28.2
Q ss_pred EEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHH
Q 032592 32 LAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAE 78 (137)
Q Consensus 32 lvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~ 78 (137)
.++++|.-++. +.+|.+.|.+....|.++ -.++.++++++...
T Consensus 1 I~v~~p~~~~D--~~~i~~~l~~g~~Vivnl--~~l~~~~~~Ri~Df 43 (73)
T PF04472_consen 1 IVVFEPKSFED--AREIVDALREGKIVIVNL--ENLDDEEAQRILDF 43 (73)
T ss_dssp -EEEE-SSGGG--HHHHHHHHHTT--EEEE---TTS-HHHHHHHHHH
T ss_pred CEEEeeCCHHH--HHHHHHHHHcCCEEEEEC--CCCCHHHHHHHHHH
Confidence 36889999976 788999998886666666 45678877777543
No 28
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=48.69 E-value=19 Score=29.93 Aligned_cols=47 Identities=17% Similarity=0.401 Sum_probs=38.8
Q ss_pred EEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcC
Q 032592 33 AMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSS 81 (137)
Q Consensus 33 vlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~ 81 (137)
=+|-|..+-.|+++.|-+.|.++||. ++-.+.-+..-|..||+.+++
T Consensus 160 DiVAPSdMMDGrV~aIR~aLd~~g~~--~v~ImSYsaKyaS~fYGPFRd 206 (323)
T PRK09283 160 DIVAPSDMMDGRVGAIREALDEAGFT--DVPIMSYSAKYASAFYGPFRD 206 (323)
T ss_pred CEEEcccccccHHHHHHHHHHHCCCC--CCceeecHHHHHHhhhHHHHH
Confidence 36778877778999999999999994 466666688889999999876
No 29
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=47.79 E-value=15 Score=30.42 Aligned_cols=47 Identities=17% Similarity=0.373 Sum_probs=38.3
Q ss_pred EEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcC
Q 032592 33 AMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSS 81 (137)
Q Consensus 33 vlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~ 81 (137)
=+|-|..+-.|+++.|-+.|.++|| .++-.+.-+..-|..||+.+++
T Consensus 152 DiVAPSdMMDGrV~aIR~aLd~~g~--~~v~ImsYsaKyaSafYGPFRd 198 (314)
T cd00384 152 DIVAPSDMMDGRVAAIREALDEAGF--SDVPIMSYSAKYASAFYGPFRD 198 (314)
T ss_pred CeeecccccccHHHHHHHHHHHCCC--CCCceeecHHHhhhhccchHHH
Confidence 3677887777999999999999999 4456666678889999998876
No 30
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=42.60 E-value=22 Score=29.53 Aligned_cols=47 Identities=17% Similarity=0.357 Sum_probs=37.9
Q ss_pred EEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcC
Q 032592 33 AMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSS 81 (137)
Q Consensus 33 vlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~ 81 (137)
=+|-|..+-.|+++.|-+.|.++||. ++-.+.-+..-|..||+.+++
T Consensus 162 DiVAPSdMMDGrV~aIR~aLd~~g~~--~v~ImSYsaKyaS~fYGPFRd 208 (322)
T PRK13384 162 DMLAPSAMMDGQVKAIRQGLDAAGFE--HVAILAHSAKFASSFYGPFRA 208 (322)
T ss_pred CeEecccccccHHHHHHHHHHHCCCC--CCceeehhHhhhhhhcchHHH
Confidence 36778877779999999999999994 455666677888999998875
No 31
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=39.54 E-value=1.8e+02 Score=22.88 Aligned_cols=51 Identities=18% Similarity=0.255 Sum_probs=40.5
Q ss_pred hcCCcCCCCCcccceEEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCH
Q 032592 15 SSPCRSLSNGSVEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDE 69 (137)
Q Consensus 15 ~~~~~~~~~~~~~~e~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~ 69 (137)
+|+|.-......-..+++++-.|..- .+.+.+.|++.|.+++..-++++.+
T Consensus 4 ~~~~~~~~~~~~l~g~~IlvTRp~~q----~~~l~~~L~~~G~~~~~~P~i~i~~ 54 (266)
T PRK08811 4 SHHHTMTGAATADAAWTLISLRPSGE----HAPLRRAVARHGGRLLALSPWRLQR 54 (266)
T ss_pred cccCcCCCCCcCCCCCEEEEeCCHHH----HHHHHHHHHHCCCcEEEcCceeecC
Confidence 56676666666667789999999864 5788999999999999998887743
No 32
>KOG2794 consensus Delta-aminolevulinic acid dehydratase [Coenzyme transport and metabolism]
Probab=38.88 E-value=1.3e+02 Score=24.80 Aligned_cols=46 Identities=17% Similarity=0.358 Sum_probs=36.7
Q ss_pred EEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcC
Q 032592 34 MIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSS 81 (137)
Q Consensus 34 lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~ 81 (137)
++-|..+-.++++.|-+.|...||. +.-.+.-+..-+..||+.+++
T Consensus 174 vVapSDmmDgRV~aIk~aL~~~~l~--~vsvmSYsaKfas~fyGpFR~ 219 (340)
T KOG2794|consen 174 VVAPSDMMDGRVGAIKQALDAEGLQ--KVSVMSYSAKFASSFYGPFRE 219 (340)
T ss_pred eecchHhhcchHHHHHHHHHHhccc--ceEEEeehhhhhhccccchHH
Confidence 5556655568899999999999999 667777788888888887765
No 33
>PF06130 PduL: Propanediol utilisation protein PduL; InterPro: IPR008300 Salmonella enterica subsp. enterica serovar Typhimurium degrades 1,2-propanediol by a pathway that requires coenzyme B12, adenosylcobalamin (AdoCbl). Proteins required for 1,2-propanediol degradation are encoded by the pdu operon []. PduL functions in this pathway, but its exact role is not yet determined. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilization of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilization (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and coregulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR010254 from INTERPRO and IPR009204 from INTERPRO for more details on the propanediol utilization pathway and the pdu operon.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups
Probab=38.63 E-value=21 Score=23.06 Aligned_cols=20 Identities=15% Similarity=0.459 Sum_probs=17.7
Q ss_pred eEEEEEEeecCHHHHHhHHH
Q 032592 58 SILRERVVRLDEDGAKTFYA 77 (137)
Q Consensus 58 ~I~~~k~~~ls~~~a~~~y~ 77 (137)
.|+..|.++|++++|+.|+.
T Consensus 4 viva~RHIHms~~da~~l~~ 23 (71)
T PF06130_consen 4 VIVAARHIHMSPEDAEKLFG 23 (71)
T ss_pred EEEEccccCCCHHHHHHhCC
Confidence 47888999999999999975
No 34
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=37.48 E-value=72 Score=22.66 Aligned_cols=53 Identities=13% Similarity=0.163 Sum_probs=36.9
Q ss_pred eecCHHHHHhHHHHhcCCC-----------cHHHHHHHhhcCCEEEEEEeeccHHHHHHHHhCC
Q 032592 65 VRLDEDGAKTFYAEHSSRS-----------FFSSLIKYMTSGPVLAMVLEKENAITDWRALIGP 117 (137)
Q Consensus 65 ~~ls~~~a~~~y~~~~~~~-----------~~~~lv~~~~sGpvv~l~l~g~naV~~~r~l~Gp 117 (137)
-+++.++++++|.+..+.- .-+...+++.+-.|-+.++..+.||++|.++-|.
T Consensus 47 Hkl~~eEle~~lee~~E~ivvGTG~~G~l~l~~ea~e~~r~k~~~vi~~pT~EAikr~nel~~~ 110 (121)
T COG1504 47 HKLALEELEELLEEGPEVIVVGTGQSGMLELSEEAREFFRKKGCEVIELPTPEAIKRYNELRGK 110 (121)
T ss_pred cccCHHHHHHHHhcCCcEEEEecCceeEEEeCHHHHHHHHhcCCeEEEeCCHHHHHHHHHHhcc
Confidence 4567777777777544321 1244455666666888888889999999999885
No 35
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=34.60 E-value=81 Score=24.57 Aligned_cols=87 Identities=13% Similarity=0.167 Sum_probs=46.2
Q ss_pred eEEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHH--HHhHHHHhcC--CCcHHHHHHHhhcCCEEEEEEee
Q 032592 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDG--AKTFYAEHSS--RSFFSSLIKYMTSGPVLAMVLEK 104 (137)
Q Consensus 29 e~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~--a~~~y~~~~~--~~~~~~lv~~~~sGpvv~l~l~g 104 (137)
...+++..|+.....-+...++.+.+.|..+...=.=++.++. ...+|..+.. +.+..++-+.+..=|++.+-+..
T Consensus 161 ~~~vlV~~p~~~~~~e~~r~~~~L~~~g~~v~gvV~N~v~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~i~~vp~~~ 240 (254)
T cd00550 161 TSFRLVCIPEKMSLYETERAIQELAKYGIDVDAVIVNQLLPEDVTNCPFLEARREIQQKYLEEIEELFSDLPVAKLPLLP 240 (254)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHCCCCCCEEEEecCcccccCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEeecCC
Confidence 3679999999876555677888999888765333221222221 1234443321 22334444444444666555444
Q ss_pred cc--HHHHHHHHh
Q 032592 105 EN--AITDWRALI 115 (137)
Q Consensus 105 ~n--aV~~~r~l~ 115 (137)
.+ .++.++++.
T Consensus 241 ~e~~g~~~L~~~~ 253 (254)
T cd00550 241 EEVVGLEKLEQFA 253 (254)
T ss_pred CCCCCHHHHHHHh
Confidence 32 335555543
No 36
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=32.19 E-value=1.8e+02 Score=20.56 Aligned_cols=38 Identities=13% Similarity=0.244 Sum_probs=25.2
Q ss_pred EEEEcCCccCCCchHHHH-HHHHHcCCeEEEEEEeecCHHHH
Q 032592 32 LAMIKPDGLSGNYTDEIK-KVILESGFSILRERVVRLDEDGA 72 (137)
Q Consensus 32 lvlIKPda~~~~~~g~II-~~i~~~Gf~I~~~k~~~ls~~~a 72 (137)
++-+++|....+ -.++ ..|+..||++....... +++++
T Consensus 7 ~a~~g~D~Hd~g--~~iv~~~l~~~GfeVi~lg~~~-s~e~~ 45 (132)
T TIGR00640 7 VAKMGQDGHDRG--AKVIATAYADLGFDVDVGPLFQ-TPEEI 45 (132)
T ss_pred EEeeCCCccHHH--HHHHHHHHHhCCcEEEECCCCC-CHHHH
Confidence 456677776543 2344 55578999999998875 44444
No 37
>PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional
Probab=31.21 E-value=1.3e+02 Score=23.44 Aligned_cols=35 Identities=20% Similarity=0.413 Sum_probs=25.7
Q ss_pred hHHHHHHHHHcCCeEEE----EEEeecCHHHHHhHHHHh
Q 032592 45 TDEIKKVILESGFSILR----ERVVRLDEDGAKTFYAEH 79 (137)
Q Consensus 45 ~g~II~~i~~~Gf~I~~----~k~~~ls~~~a~~~y~~~ 79 (137)
+-.++++|++.|+--.. .+.+.+|+.-...+...+
T Consensus 38 vsr~Lk~LEe~GlI~R~~~~r~~~v~LTekG~~ll~~~~ 76 (217)
T PRK14165 38 AARILKQLEDEGYITRTIVPRGQLITITEKGLDVLYNEY 76 (217)
T ss_pred HHHHHHHHHHCCCEEEEEcCCceEEEECHHHHHHHHHHH
Confidence 56799999999998654 577888988655554443
No 38
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=29.14 E-value=55 Score=27.21 Aligned_cols=47 Identities=17% Similarity=0.379 Sum_probs=38.0
Q ss_pred EEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcC
Q 032592 33 AMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSS 81 (137)
Q Consensus 33 vlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~ 81 (137)
=+|-|..+=.|+++.|-+.|.+.||.=+. .+.-+..-|..||+.+++
T Consensus 165 divAPSdMMDGrV~aIR~aLd~ag~~~v~--IMsYsaKyASafYGPFRd 211 (330)
T COG0113 165 DIVAPSDMMDGRVGAIREALDEAGFIDVP--IMSYSAKYASAFYGPFRD 211 (330)
T ss_pred CeecccccccchHHHHHHHHHHcCCCcce--eeehhHHHhhhccccHHH
Confidence 47888887789999999999999997544 445577788899988876
No 39
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=28.52 E-value=1.6e+02 Score=18.80 Aligned_cols=45 Identities=13% Similarity=0.209 Sum_probs=28.2
Q ss_pred EEEEEEcCCccCCCchHHHHHHHHHc---CCeEEEEEEeecCHHHHHhHHHH
Q 032592 30 KTLAMIKPDGLSGNYTDEIKKVILES---GFSILRERVVRLDEDGAKTFYAE 78 (137)
Q Consensus 30 ~tlvlIKPda~~~~~~g~II~~i~~~---Gf~I~~~k~~~ls~~~a~~~y~~ 78 (137)
-..+.|.|+.-.+|.-..+++.+++. |+....+. +...+..||..
T Consensus 67 i~~l~v~p~~r~~Gig~~Ll~~~~~~~~~~~~~l~~~----~~~~a~~~y~~ 114 (117)
T PF13673_consen 67 ISHLYVLPEYRGRGIGRALLDAAEKEAKDGIRRLTVE----ANERARRFYRK 114 (117)
T ss_dssp EEEEEE-GGGTTSSHHHHHHHHHHHHHTTTCEEEEEE----C-HHHHHHHHH
T ss_pred EEEEEEChhhcCCcHHHHHHHHHHHHHHcCCcEEEEE----eCHHHHHHHHh
Confidence 55577888876666444455555442 77777666 67778888865
No 40
>PRK12483 threonine dehydratase; Reviewed
Probab=28.04 E-value=2e+02 Score=25.33 Aligned_cols=55 Identities=20% Similarity=0.427 Sum_probs=38.1
Q ss_pred HHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcCCCcHHHHHHHhhcCC--------EEEEEE-eeccHHHHHHHHhC
Q 032592 46 DEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGP--------VLAMVL-EKENAITDWRALIG 116 (137)
Q Consensus 46 g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGp--------vv~l~l-~g~naV~~~r~l~G 116 (137)
.+|++.|++.||.+..+ +.++ .+..++.||..|- +.+..+ +.+.+..++-+.+|
T Consensus 400 ~~i~~~l~~~g~~~~dl-----sdne------------~~k~h~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l~ 462 (521)
T PRK12483 400 AQLLASLRAQGFPVLDL-----TDDE------------LAKLHIRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRLG 462 (521)
T ss_pred HHHHHHHHHCCCCeEEC-----CCCH------------HHHHHHHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHhC
Confidence 67888888888876543 3332 3444567777762 456666 67889999999999
Q ss_pred C
Q 032592 117 P 117 (137)
Q Consensus 117 p 117 (137)
|
T Consensus 463 ~ 463 (521)
T PRK12483 463 P 463 (521)
T ss_pred C
Confidence 8
No 41
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=26.50 E-value=97 Score=19.80 Aligned_cols=20 Identities=25% Similarity=0.582 Sum_probs=17.5
Q ss_pred hHHHHHHHHHcCCeEEEEEE
Q 032592 45 TDEIKKVILESGFSILRERV 64 (137)
Q Consensus 45 ~g~II~~i~~~Gf~I~~~k~ 64 (137)
..++|..|+..||..+..|=
T Consensus 9 ~ke~ik~Le~~Gf~~vrqkG 28 (66)
T COG1724 9 AKEVIKALEKDGFQLVRQKG 28 (66)
T ss_pred HHHHHHHHHhCCcEEEEeec
Confidence 46899999999999998874
No 42
>PF13788 DUF4180: Domain of unknown function (DUF4180)
Probab=26.48 E-value=1.2e+02 Score=21.31 Aligned_cols=23 Identities=9% Similarity=0.050 Sum_probs=18.7
Q ss_pred CCCchHHHHHHHHHcCCeEEEEE
Q 032592 41 SGNYTDEIKKVILESGFSILRER 63 (137)
Q Consensus 41 ~~~~~g~II~~i~~~Gf~I~~~k 63 (137)
+.+.+|+|+|++...+.++.-.-
T Consensus 54 ~TglAGeiLQKf~NY~iklAivG 76 (113)
T PF13788_consen 54 RTGLAGEILQKFVNYRIKLAIVG 76 (113)
T ss_pred hcchHHHHHHHHHhhceeEEEEE
Confidence 35788999999999988777663
No 43
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=25.25 E-value=70 Score=26.56 Aligned_cols=46 Identities=15% Similarity=0.378 Sum_probs=34.5
Q ss_pred EEcCCccCCCchHHHHHHHHHcCC-eEEEEEEeecCHHHHHhHHHHhcC
Q 032592 34 MIKPDGLSGNYTDEIKKVILESGF-SILRERVVRLDEDGAKTFYAEHSS 81 (137)
Q Consensus 34 lIKPda~~~~~~g~II~~i~~~Gf-~I~~~k~~~ls~~~a~~~y~~~~~ 81 (137)
+|-|..+-.|+++.|-+.|.++|| .=+. .+.-+..-|..||+.+++
T Consensus 157 iVAPSdMMDGrV~aIR~aLD~~G~~~~v~--ImSYsaKyaS~fYGPFRd 203 (320)
T cd04824 157 IVAPSDMMDGRVRAIKQALIQAGLGNKVS--VMSYSAKFASCLYGPFRD 203 (320)
T ss_pred EEecccccccHHHHHHHHHHHCCCccCCe--eeehHHHhhhhccchHHH
Confidence 677887777999999999999999 3222 223366678888888775
No 44
>KOG2456 consensus Aldehyde dehydrogenase [Energy production and conversion]
Probab=24.20 E-value=1.2e+02 Score=26.29 Aligned_cols=70 Identities=19% Similarity=0.199 Sum_probs=48.5
Q ss_pred EEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcCCCcHHH-----------HHHHhhcCCEEEE
Q 032592 32 LAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSS-----------LIKYMTSGPVLAM 100 (137)
Q Consensus 32 lvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~-----------lv~~~~sGpvv~l 100 (137)
.++|||.-++. ....++..+.-+=|.=...+.++=..++..++..+.=|.-||.. ...++| -+.|
T Consensus 134 ~VVlKPSEls~-n~a~~lakllp~Yld~~~~~VV~Ggv~ETt~LL~~rfD~IfyTGsp~VgkIim~aAaKhLT---PvtL 209 (477)
T KOG2456|consen 134 AVVLKPSELSP-NTAKLLAKLLPQYLDQDLIRVVNGGVPETTELLKQRFDHIFYTGSPRVGKIIMAAAAKHLT---PVTL 209 (477)
T ss_pred EEEechhhcCh-hHHHHHHHHHHHhcCcceEEEecCCCchHHHHHHhhccEEEecCCchHHHHHHHHHHhcCC---cEEE
Confidence 58899999875 46778877765556666677777777888888777556555522 234555 6778
Q ss_pred EEeec
Q 032592 101 VLEKE 105 (137)
Q Consensus 101 ~l~g~ 105 (137)
+|.|.
T Consensus 210 ELGGK 214 (477)
T KOG2456|consen 210 ELGGK 214 (477)
T ss_pred EcCCC
Confidence 88774
No 45
>PF04015 DUF362: Domain of unknown function (DUF362) ; InterPro: IPR007160 This domain is found in some iron-sulphur proteins.
Probab=24.15 E-value=2.2e+02 Score=21.11 Aligned_cols=44 Identities=14% Similarity=0.278 Sum_probs=25.7
Q ss_pred EEEcCCccCC-----------CchHHHHHHHHHcCCe-EEEEEEeecCHHHHHhHH
Q 032592 33 AMIKPDGLSG-----------NYTDEIKKVILESGFS-ILRERVVRLDEDGAKTFY 76 (137)
Q Consensus 33 vlIKPda~~~-----------~~~g~II~~i~~~Gf~-I~~~k~~~ls~~~a~~~y 76 (137)
|+|||+.... ..+..+++.+.+.|.. |.-...........++.|
T Consensus 2 V~IKpN~~~~~~~~~~~~T~P~vv~avv~~l~~~g~~~i~i~e~~~~~~~~~~~~~ 57 (206)
T PF04015_consen 2 VLIKPNFVNPGPPESGATTHPEVVRAVVEMLKEAGAKEIIIAESPGSGAADTREVF 57 (206)
T ss_pred EEEEeCCCCCCCCCCCccCCHHHHHHHHHHHHHcCCCceEEEeCCCcchHhHHHHH
Confidence 6778876532 1357888999988886 444444333323344443
No 46
>PF07395 Mig-14: Mig-14; InterPro: IPR009977 This family contains a number of bacterial mig-14 proteins (approximately 270 residues long). In Salmonella, mig-14 contributes to resistance to antimicrobial peptides, although the mechanism is not fully understood [].
Probab=24.14 E-value=1.2e+02 Score=24.44 Aligned_cols=62 Identities=13% Similarity=0.218 Sum_probs=44.2
Q ss_pred hcCCcCCCCCcccceEEEEEEc-CCccCCCc---hHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHH
Q 032592 15 SSPCRSLSNGSVEKEKTLAMIK-PDGLSGNY---TDEIKKVILESGFSILRERVVRLDEDGAKTFYAE 78 (137)
Q Consensus 15 ~~~~~~~~~~~~~~e~tlvlIK-Pda~~~~~---~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~ 78 (137)
|++|...-.+.....+.++++| |+.+++.- -..=++++++.|-.|..+.. +|.++....|.+
T Consensus 81 S~l~~~~i~n~~~~kr~iclaK~~e~fSkKt~~~rrrElrkF~~~GG~v~~v~~--~S~~Ela~iY~~ 146 (264)
T PF07395_consen 81 SPLNKGNIINATNQKRQICLAKGPESFSKKTRKNRRRELRKFIEAGGSVRPVSE--FSPEELADIYID 146 (264)
T ss_pred ChhhhcchhcccccccceeeEcCchhhchHHHHHHHHHHHHHHHcCCEEEEHHH--CCHHHHHHHHHH
Confidence 6666666666557788999999 55565321 13357888999999998765 588888777665
No 47
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=23.08 E-value=2.1e+02 Score=18.09 Aligned_cols=72 Identities=10% Similarity=0.073 Sum_probs=42.0
Q ss_pred CchH-HHHHHHHHcCCeEEEEEEe-ecCHHHHHhHHHHhcCCCcHHHHHHHhhcCCEEEEEEeeccHHHHHHHH
Q 032592 43 NYTD-EIKKVILESGFSILRERVV-RLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRAL 114 (137)
Q Consensus 43 ~~~g-~II~~i~~~Gf~I~~~k~~-~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvv~l~l~g~naV~~~r~l 114 (137)
|.+| .+...+.+.|+.-.++-.. .-+++.++++...+.-..+..+..+.+....++.+-+.-.+.-+-+.++
T Consensus 8 G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~~~~~v~~~i 81 (96)
T PF03807_consen 8 GNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQQLPEVLSEI 81 (96)
T ss_dssp SHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GGGHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHHHHHHHHHHH
Confidence 4454 4678889999633333333 6678888888766542111113334455678888888877766666665
No 48
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.96 E-value=1.6e+02 Score=16.87 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=23.8
Q ss_pred EEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEe
Q 032592 32 LAMIKPDGLSGNYTDEIKKVILESGFSILRERVV 65 (137)
Q Consensus 32 lvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~ 65 (137)
+.+.-+|.- +.+++|.+.+.+.|..|..+...
T Consensus 2 l~i~~~d~~--g~l~~i~~~l~~~~~~I~~~~~~ 33 (71)
T cd04903 2 LIVVHKDKP--GAIAKVTSVLADHEINIAFMRVS 33 (71)
T ss_pred EEEEeCCCC--ChHHHHHHHHHHcCcCeeeeEEE
Confidence 455556643 45789999999999999887653
No 49
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=22.46 E-value=1.3e+02 Score=25.56 Aligned_cols=58 Identities=14% Similarity=0.288 Sum_probs=37.4
Q ss_pred CchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcCCCcHHHHHHHhhcCCEEEEEEee-----ccHHHHHHHHhCC
Q 032592 43 NYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEK-----ENAITDWRALIGP 117 (137)
Q Consensus 43 ~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvv~l~l~g-----~naV~~~r~l~Gp 117 (137)
|....||+.|.+.|++++-.-. +-+.+++.++. .| --|++.|| | +.+|+..++++|.
T Consensus 188 GvK~nIlr~L~~rg~~vtVVP~-~t~~eeIl~~~---pD-------GiflSNGP-------GDP~~~~~~i~~ik~l~~~ 249 (368)
T COG0505 188 GVKRNILRELVKRGCRVTVVPA-DTSAEEILALN---PD-------GIFLSNGP-------GDPAPLDYAIETIKELLGT 249 (368)
T ss_pred CccHHHHHHHHHCCCeEEEEcC-CCCHHHHHhhC---CC-------EEEEeCCC-------CChhHHHHHHHHHHHHhcc
Confidence 4456899999999999875532 12333333332 21 13577787 5 3689999999985
Q ss_pred C
Q 032592 118 T 118 (137)
Q Consensus 118 ~ 118 (137)
.
T Consensus 250 ~ 250 (368)
T COG0505 250 K 250 (368)
T ss_pred C
Confidence 4
No 50
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=22.27 E-value=1.5e+02 Score=24.92 Aligned_cols=52 Identities=23% Similarity=0.354 Sum_probs=36.3
Q ss_pred HHHHHcCCeEEEEEEeecCHHHHHhHHHHhcC------------CCcHHHHHHHhhcCCEEEEE
Q 032592 50 KVILESGFSILRERVVRLDEDGAKTFYAEHSS------------RSFFSSLIKYMTSGPVLAMV 101 (137)
Q Consensus 50 ~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~------------~~~~~~lv~~~~sGpvv~l~ 101 (137)
+++.+.|++|....--.+++++...||..|.. +.||..+.+.|...-++++.
T Consensus 193 r~v~~~Gi~~~~l~G~~i~~~~~~~f~~~Y~~Ty~k~~~~~yLt~~FF~~l~~~m~~~~~l~~A 256 (370)
T PF04339_consen 193 RKVAEQGIRIRTLTGDEITDEDWDRFYRLYQNTYAKRWGRPYLTREFFEQLAETMPEQVVLVVA 256 (370)
T ss_pred HHHHHcCCEEEEEeCCCCCHHHHHHHHHHHHHHHHhhCCChhhcHHHHHHHHHhCcCCEEEEEE
Confidence 45567899999998888999988777665543 24677777776655444333
No 51
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=22.27 E-value=1e+02 Score=19.44 Aligned_cols=21 Identities=19% Similarity=0.357 Sum_probs=17.8
Q ss_pred HHHHHHHHHcCCeEEEEEEee
Q 032592 46 DEIKKVILESGFSILRERVVR 66 (137)
Q Consensus 46 g~II~~i~~~Gf~I~~~k~~~ 66 (137)
..|.+.|.+.||.+..+..++
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~ 22 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMH 22 (68)
T ss_pred HHHHHHHHHcCCceEEEEccc
Confidence 368999999999999887664
No 52
>PF06399 GFRP: GTP cyclohydrolase I feedback regulatory protein (GFRP); InterPro: IPR009112 GTP cyclohydrolase I feedback regulatory protein (GFRP) in mammals helps regulate the biosynthesis of tetrahydrobiopterin through the feedback inhibition of the rate-limiting enzyme GTP cyclohydrolase I (GTPCHI). Tetrahydrobiopterin is the cofactor required for the hydroxylation of aromatic amino acids. The crystal structure of GFRP reveals that the protein forms a homopentamer []. In the presence of phenylalanine, the stimulatory complex consists of a GTPCHI decamer sandwiched by two GFRP pentamers, which is thought to enhance GTPCHI activity by locking the enzyme in the active state []. The structure of GFRP consists of two alpha/beta layers arranged beta(2)-alpha-beta(2)-alpha-beta(2), with antiparallel beta-sheets in the order 342165.; GO: 0009890 negative regulation of biosynthetic process; PDB: 1IS7_N 1IS8_Q 1WPL_T 1JG5_C.
Probab=21.65 E-value=1.5e+02 Score=19.80 Aligned_cols=21 Identities=10% Similarity=0.196 Sum_probs=17.7
Q ss_pred hHHHHHHHHHcCCeEEEEEEe
Q 032592 45 TDEIKKVILESGFSILRERVV 65 (137)
Q Consensus 45 ~g~II~~i~~~Gf~I~~~k~~ 65 (137)
-..++++|+..||+++.+.-+
T Consensus 52 Pr~VLnKLE~~G~kVvsmtgv 72 (83)
T PF06399_consen 52 PRVVLNKLEKMGYKVVSMTGV 72 (83)
T ss_dssp HHHHHHHHHHTTEEEEEEEEE
T ss_pred hHHHHHHHHhcCeEEEEEecc
Confidence 367999999999999988643
No 53
>PRK15070 propanediol utilization phosphotransacylase; Provisional
Probab=21.35 E-value=73 Score=24.91 Aligned_cols=19 Identities=21% Similarity=0.403 Sum_probs=17.3
Q ss_pred CeEEEEEEeecCHHHHHhH
Q 032592 57 FSILRERVVRLDEDGAKTF 75 (137)
Q Consensus 57 f~I~~~k~~~ls~~~a~~~ 75 (137)
-.|++.|.++|++++|++|
T Consensus 135 GvIvA~RHIHm~p~dA~~~ 153 (211)
T PRK15070 135 GVIVAKRHIHMSPEDAEKF 153 (211)
T ss_pred cEEEEecccCCCHHHHHHh
Confidence 4589999999999999988
No 54
>PF15206 FAM209: FAM209 family
Probab=20.77 E-value=55 Score=24.10 Aligned_cols=19 Identities=32% Similarity=0.347 Sum_probs=14.6
Q ss_pred ChhhhhhcCCCCccCCCCC
Q 032592 119 DAKKAKISHPHRLYVLPFG 137 (137)
Q Consensus 119 dp~~A~~~~p~slRa~~~~ 137 (137)
|.++.+...|.+||++||+
T Consensus 59 ~~~K~keq~p~glrg~~fr 77 (150)
T PF15206_consen 59 DSEKNKEQSPPGLRGCSFR 77 (150)
T ss_pred CcccccccCCCccCcccCC
Confidence 4455667779999999985
No 55
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=20.14 E-value=1.8e+02 Score=25.40 Aligned_cols=36 Identities=14% Similarity=0.219 Sum_probs=23.9
Q ss_pred cHHHHHHHhhcCCE--------EEEEE-eeccHHHHHHHHhCCCC
Q 032592 84 FFSSLIKYMTSGPV--------LAMVL-EKENAITDWRALIGPTD 119 (137)
Q Consensus 84 ~~~~lv~~~~sGpv--------v~l~l-~g~naV~~~r~l~Gp~d 119 (137)
.+..++.||..|-. .-+++ +.+.|..++-+.+||.+
T Consensus 400 ~~k~h~r~~~g~~~~~~~~e~~~~~~fperpgaL~~Fl~~l~~~~ 444 (499)
T TIGR01124 400 LAKLHVRYMVGGRPPHVENERLYSFEFPERPGALLRFLNTLQGYW 444 (499)
T ss_pred HHHHHHHhccCCCCCCCCCceEEEEeCCCCccHHHHHHHhcCCCC
Confidence 35556778887732 11222 46789999999999865
No 56
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=20.08 E-value=1.1e+02 Score=20.15 Aligned_cols=25 Identities=12% Similarity=0.348 Sum_probs=20.0
Q ss_pred ccCCCchHHHHHHHHHcCCeEEEEEE
Q 032592 39 GLSGNYTDEIKKVILESGFSILRERV 64 (137)
Q Consensus 39 a~~~~~~g~II~~i~~~Gf~I~~~k~ 64 (137)
|++.+ +..|-+.|.++||+++.++.
T Consensus 5 AVE~~-Ls~v~~~L~~~GyeVv~l~~ 29 (80)
T PF03698_consen 5 AVEEG-LSNVKEALREKGYEVVDLEN 29 (80)
T ss_pred EecCC-chHHHHHHHHCCCEEEecCC
Confidence 45555 46899999999999998874
Done!