Query 032592
Match_columns 137
No_of_seqs 111 out of 1064
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 04:57:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032592.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032592hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hr2_A Nucleoside diphosphate 100.0 3.2E-39 1.1E-43 235.5 9.9 107 24-133 3-109 (145)
2 3ztp_A Nucleoside diphosphate 100.0 5.8E-39 2E-43 233.5 9.9 107 28-134 3-109 (142)
3 3fkb_A NDP kinase, NDK, nucleo 100.0 3E-38 1E-42 232.6 9.7 109 22-133 2-110 (155)
4 3evo_A NDP kinase, NDK, nucleo 100.0 4.8E-38 1.6E-42 229.6 9.7 106 26-134 4-110 (146)
5 3mpd_A Nucleoside diphosphate 100.0 4.4E-38 1.5E-42 230.9 9.2 105 26-133 3-107 (151)
6 3q8u_A Nucleoside diphosphate 100.0 5.7E-38 1.9E-42 231.5 9.5 104 28-134 1-104 (157)
7 4fkx_A NDK B, nucleoside dipho 100.0 9.4E-38 3.2E-42 231.0 9.6 104 27-133 10-113 (161)
8 1wkj_A Nucleoside diphosphate 100.0 9.2E-38 3.1E-42 226.0 9.2 103 28-133 1-103 (137)
9 1k44_A Nucleoside diphosphate 100.0 1.5E-37 5.1E-42 224.6 9.7 103 28-133 2-105 (136)
10 3l7u_A Nucleoside diphosphate 100.0 1.4E-37 4.7E-42 232.2 9.4 106 25-133 21-126 (172)
11 1ehw_A NDPK H4, nucleoside dip 100.0 2.1E-37 7.1E-42 229.5 10.1 105 26-133 22-126 (162)
12 1nhk_R Nucleoside diphosphate 100.0 2.4E-37 8.2E-42 225.5 10.0 103 28-133 2-104 (144)
13 2hur_A NDK, nucleoside diphosp 100.0 2.3E-37 8E-42 225.1 9.6 103 28-133 2-104 (142)
14 1pku_A Nucleoside diphosphate 100.0 3.3E-37 1.1E-41 226.1 9.5 103 28-133 2-104 (150)
15 1s57_A Nucleoside diphosphate 100.0 3.9E-37 1.3E-41 226.3 9.7 104 27-133 4-107 (153)
16 2vu5_A Nucleoside diphosphate 100.0 2.5E-37 8.6E-42 226.3 8.5 103 28-133 1-103 (148)
17 3r9l_A Nucleoside diphosphate 100.0 7.4E-38 2.5E-42 230.5 5.5 106 25-133 4-109 (155)
18 1xiq_A Nucleoside diphosphate 100.0 2.9E-37 1E-41 227.8 8.3 104 27-133 8-111 (157)
19 3b54_A NDK, NDP kinase, nucleo 100.0 2.2E-37 7.5E-42 229.2 7.7 106 25-133 10-115 (161)
20 1u8w_A Nucleoside diphosphate 100.0 3.6E-37 1.2E-41 225.7 8.5 103 28-133 1-103 (149)
21 3js9_A Nucleoside diphosphate 100.0 6.1E-37 2.1E-41 225.8 9.6 104 27-133 8-111 (156)
22 2dxe_A Nucleoside diphosphate 100.0 6.7E-37 2.3E-41 226.5 9.8 104 27-133 6-109 (160)
23 3bbb_A Nucleoside diphosphate 100.0 7.1E-37 2.4E-41 224.5 9.7 104 27-133 2-105 (151)
24 1w7w_A Nucleoside diphosphate 100.0 8E-37 2.7E-41 230.0 9.8 108 23-133 27-134 (182)
25 2az3_A Nucleoside diphosphate 100.0 1.1E-36 3.6E-41 226.2 10.0 105 26-133 6-110 (164)
26 1zs6_A Nucleoside diphosphate 100.0 1.2E-36 4.2E-41 226.8 9.9 106 25-133 18-123 (169)
27 1nb2_A Nucleoside diphosphate 100.0 3.1E-37 1.1E-41 226.2 6.2 103 28-133 2-104 (150)
28 4dz6_A Nucleoside diphosphate 100.0 2.3E-36 7.8E-41 228.7 7.8 107 25-134 23-134 (190)
29 1xqi_A Nucleoside diphosphate 100.0 3.5E-34 1.2E-38 217.8 7.5 104 27-133 14-150 (195)
30 3bh7_B Protein XRP2; protein-p 99.9 1.4E-25 4.9E-30 183.4 7.4 90 26-120 233-322 (352)
31 3p04_A Uncharacterized BCR; SE 73.8 3.6 0.00012 26.7 3.6 43 30-76 5-47 (87)
32 1jr2_A Uroporphyrinogen-III sy 49.5 26 0.00087 26.4 4.9 52 17-69 9-61 (286)
33 3i5g_C Myosin catalytic light 35.2 29 0.001 23.5 3.0 32 66-97 117-154 (159)
34 1yad_A Regulatory protein TENI 32.4 42 0.0014 24.1 3.6 61 17-78 4-64 (221)
35 3io3_A DEHA2D07832P; chaperone 26.6 39 0.0013 26.6 2.7 94 29-124 232-339 (348)
36 1jg5_A GTP cyclohydrolase I fe 23.9 69 0.0024 20.4 2.9 21 45-65 52-72 (83)
37 1w5q_A Delta-aminolevulinic ac 23.5 7.3 0.00025 31.3 -2.1 46 34-81 171-216 (337)
38 1l6s_A Porphobilinogen synthas 22.6 5.8 0.0002 31.7 -2.8 45 34-80 160-204 (323)
39 1w1z_A Delta-aminolevulinic ac 20.5 6.8 0.00023 31.4 -2.9 46 34-81 166-211 (328)
No 1
>4hr2_A Nucleoside diphosphate kinase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: ADP; 1.95A {Burkholderia thailandensis} PDB: 4dut_A* 4ek2_A*
Probab=100.00 E-value=3.2e-39 Score=235.49 Aligned_cols=107 Identities=40% Similarity=0.661 Sum_probs=103.7
Q ss_pred CcccceEEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcCCCcHHHHHHHhhcCCEEEEEEe
Q 032592 24 GSVEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLE 103 (137)
Q Consensus 24 ~~~~~e~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvv~l~l~ 103 (137)
++...|+||+|||||+++++++|+||++|+++||+|+++||+++|+++|++||.+|++++||++|++||+||||++++|+
T Consensus 3 g~m~~ErTl~iIKPDav~~~l~g~Ii~rie~~Gf~I~~~k~~~lt~e~a~~fY~~h~~kpff~~Lv~~mtSGPvva~vle 82 (145)
T 4hr2_A 3 GSMALERTLSIIKPDAVAKNVIGQIYSRFENAGLKIVAARMAHLSRADAEKFYAVHAERPFFKDLVEFMISGPVMIQVLE 82 (145)
T ss_dssp -CCCEEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEE
T ss_pred CcchHHHeEEEEChHHhhcCCHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHHhcCchHHHHHHHhcCCCEEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccHHHHHHHHhCCCChhhhhhcCCCCccC
Q 032592 104 KENAITDWRALIGPTDAKKAKISHPHRLYV 133 (137)
Q Consensus 104 g~naV~~~r~l~Gp~dp~~A~~~~p~slRa 133 (137)
|+|||+.||+++|||||.+|+ |+||||
T Consensus 83 g~~aV~~~R~l~G~tdp~~A~---pgtIR~ 109 (145)
T 4hr2_A 83 GEDAILKNRDLMGATDPKKAE---KGTIRA 109 (145)
T ss_dssp EETHHHHHHHHHCCSSTTTSC---TTSHHH
T ss_pred cCCcHhHHhhccCCCCcccCC---CCCcHH
Confidence 999999999999999999998 999997
No 2
>3ztp_A Nucleoside diphosphate kinase; transferase; HET: GOL; 1.37A {Aquifex aeolicus} PDB: 3zto_A* 3ztq_A 3ztr_A 3zts_A
Probab=100.00 E-value=5.8e-39 Score=233.54 Aligned_cols=107 Identities=36% Similarity=0.647 Sum_probs=104.6
Q ss_pred ceEEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcCCCcHHHHHHHhhcCCEEEEEEeeccH
Q 032592 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENA 107 (137)
Q Consensus 28 ~e~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvv~l~l~g~na 107 (137)
.|+||+|||||++.++++|+||++|+++||+|+++||+++++++|++||.+|++++||++|++||+|||+++++|+|+||
T Consensus 3 ~e~Tl~iIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~e~a~~~Y~~~~~kpff~~Lv~~mtSGPvva~vl~g~na 82 (142)
T 3ztp_A 3 VERTLIIVKPDAMEKGALGKILDRFIQEGFQIKALKMFRFTPEKAGEFYYVHRERPFFQELVEFMSSGPVVAAVLEGEDA 82 (142)
T ss_dssp EEEEEEEECHHHHHHTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETH
T ss_pred cceEEEEEChHHHhcccHHHHHHHHHHcCCEEEEEeeccCCHHHHHHHHHHhcCCchHHHHHHHhcCCCEEEEEEeCCCH
Confidence 69999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChhhhhhcCCCCccCC
Q 032592 108 ITDWRALIGPTDAKKAKISHPHRLYVL 134 (137)
Q Consensus 108 V~~~r~l~Gp~dp~~A~~~~p~slRa~ 134 (137)
|++||+++|||||.+|+...|+||||.
T Consensus 83 V~~~R~l~G~t~p~~A~~~~pgtiR~~ 109 (142)
T 3ztp_A 83 IKRVREIIGPTDSEEARKVAPNSIRAQ 109 (142)
T ss_dssp HHHHHHHHCCSSHHHHHHHCTTSHHHH
T ss_pred HHHHHHhcCCCCHHHhhhcCCCChHHH
Confidence 999999999999999999999999973
No 3
>3fkb_A NDP kinase, NDK, nucleoside diphosphate kinase, cytosolic; AN hexamer structure, ATP-binding, magnesium, metal- nucleotide metabolism; HET: TNM TNV; 1.65A {Dictyostelium discoideum} SCOP: d.58.6.1 PDB: 1b4s_A* 1mn9_A* 1f3f_A* 1hlw_A 1ndk_A 1pae_X 1f6t_A* 1bux_A* 1b99_A* 1hiy_A* 1kdn_A* 1ndc_A* 1ndp_A* 1nsp_A* 1s5z_A* 2bef_A* 1mn7_A* 1hhq_A 1lwx_A* 1npk_A ...
Probab=100.00 E-value=3e-38 Score=232.64 Aligned_cols=109 Identities=34% Similarity=0.565 Sum_probs=102.7
Q ss_pred CCCcccceEEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcCCCcHHHHHHHhhcCCEEEEE
Q 032592 22 SNGSVEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMV 101 (137)
Q Consensus 22 ~~~~~~~e~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvv~l~ 101 (137)
+.++...|+||+|||||++.++++|+||++|+++||+|+++||+++++++|++||.+|++++||++|++||+||||++|+
T Consensus 2 ~~~k~~~ErTl~iIKPDav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamv 81 (155)
T 3fkb_A 2 STNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAMV 81 (155)
T ss_dssp ----CTTCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEE
T ss_pred CCCCcccceEEEEEChhHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCchHHHHHHHhcCCCEEEEE
Confidence 45567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccHHHHHHHHhCCCChhhhhhcCCCCccC
Q 032592 102 LEKENAITDWRALIGPTDAKKAKISHPHRLYV 133 (137)
Q Consensus 102 l~g~naV~~~r~l~Gp~dp~~A~~~~p~slRa 133 (137)
|+|+|||+.||+++|||||.+|. |+||||
T Consensus 82 leg~naV~~~R~l~G~t~p~~a~---PgtIR~ 110 (155)
T 3fkb_A 82 FEGKGVVASARLMIGVTNPLASA---PGSIRG 110 (155)
T ss_dssp EESTTHHHHHHHHHCCSSGGGSC---TTSHHH
T ss_pred EeCCCHHHHHHHhcCCCChhhcC---CCChhH
Confidence 99999999999999999999886 999997
No 4
>3evo_A NDP kinase, NDK, nucleoside diphosphate kinase; phosphotransferase nucleotide binding, ATP-binding, magnesium, metal-binding; HET: TYD; 1.50A {Acanthamoeba polyphaga mimivirus} SCOP: d.58.6.1 PDB: 3ejm_A* 3emt_A* 3em1_A* 3fc9_A* 3g2x_A* 3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A* 3fcv_A* 3b6b_A* 2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A* 3eic_A* 3evw_A* 3gpa_A* ...
Probab=100.00 E-value=4.8e-38 Score=229.59 Aligned_cols=106 Identities=28% Similarity=0.450 Sum_probs=101.6
Q ss_pred ccceEEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeec-CHHHHHhHHHHhcCCCcHHHHHHHhhcCCEEEEEEee
Q 032592 26 VEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRL-DEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEK 104 (137)
Q Consensus 26 ~~~e~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~l-s~~~a~~~y~~~~~~~~~~~lv~~~~sGpvv~l~l~g 104 (137)
...|+||+|||||++.++++|+||++|+++||+|+++||+++ ++++|++||.+|++++||++|++||+|||+++|+|+|
T Consensus 4 ~~~e~Tl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~l~s~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vleg 83 (146)
T 3evo_A 4 AGLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFNDNCDFMVSGPIISIVYEG 83 (146)
T ss_dssp --CEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEESSCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEE
T ss_pred CcceeEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEeccCCHHHHHHHHHHHcCCccHHHHHHHHhcCCeEEEEEeC
Confidence 457999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHhCCCChhhhhhcCCCCccCC
Q 032592 105 ENAITDWRALIGPTDAKKAKISHPHRLYVL 134 (137)
Q Consensus 105 ~naV~~~r~l~Gp~dp~~A~~~~p~slRa~ 134 (137)
+|||+.||+++|||||.+|. |+||||.
T Consensus 84 ~naV~~~R~l~G~t~p~~A~---pgtiR~~ 110 (146)
T 3evo_A 84 TDAISKIRRLQGNTNPLASA---PGTIRGD 110 (146)
T ss_dssp TTHHHHHHHHHCCSSTTTCC---TTSHHHH
T ss_pred CCHHHHHHHHcCCCCcccCC---CCChHHH
Confidence 99999999999999999995 9999973
No 5
>3mpd_A Nucleoside diphosphate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, encepha cuniculi, structural genomics; 2.08A {Encephalitozoon cuniculi} SCOP: d.58.6.0
Probab=100.00 E-value=4.4e-38 Score=230.93 Aligned_cols=105 Identities=31% Similarity=0.403 Sum_probs=101.1
Q ss_pred ccceEEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcCCCcHHHHHHHhhcCCEEEEEEeec
Q 032592 26 VEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKE 105 (137)
Q Consensus 26 ~~~e~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvv~l~l~g~ 105 (137)
...|+||+|||||+++++++|+||++|+++||+|+++||+++|+++|++||.+|++++||++|++||+|||+++|+|+|+
T Consensus 3 ~~~erTl~iIKPdav~~~~~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~ 82 (151)
T 3mpd_A 3 GSMERTFIMIKPDAIKRRLISRIIQRFEEKGLYLAASKCVIPKREVLETHYSHLSSMPFFSEMVEDMMSGMVLAMVWVGK 82 (151)
T ss_dssp --CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEST
T ss_pred CceEEEEEEEChhHhhcCcHHHHHHHHHHCCCEEEEEEEEcCCHHHHHHHHHHHcCCccHHHHHHHhcCCCEEEEEEeCC
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhCCCChhhhhhcCCCCccC
Q 032592 106 NAITDWRALIGPTDAKKAKISHPHRLYV 133 (137)
Q Consensus 106 naV~~~r~l~Gp~dp~~A~~~~p~slRa 133 (137)
|||+.||+++|||||.+|. |+||||
T Consensus 83 naV~~~R~l~G~t~p~~a~---PgtiR~ 107 (151)
T 3mpd_A 83 DAVSIGRKLIGETNPQAAS---VGTIRG 107 (151)
T ss_dssp THHHHHHHHHCCSSTTTSC---TTSHHH
T ss_pred cHHHHHHHHhCCCChhhcC---CCChhH
Confidence 9999999999999999886 999997
No 6
>3q8u_A Nucleoside diphosphate kinase; ferridoxin fold, alpha-beta protein family; HET: ADP; 2.22A {Staphylococcus aureus subsp} PDB: 3q83_A* 3q89_A* 3q86_A* 3q8v_A* 3q8y_A*
Probab=100.00 E-value=5.7e-38 Score=231.51 Aligned_cols=104 Identities=34% Similarity=0.574 Sum_probs=101.3
Q ss_pred ceEEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcCCCcHHHHHHHhhcCCEEEEEEeeccH
Q 032592 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENA 107 (137)
Q Consensus 28 ~e~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvv~l~l~g~na 107 (137)
+|+||+|||||+++++++|+||++|+++||+|+++||+++++++|++||.+|++++||++|++||+||||++|+++|+||
T Consensus 1 mErTl~iIKPDav~~~~~G~Ii~~ie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~na 80 (157)
T 3q8u_A 1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDA 80 (157)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred CceEEEEEChHHhhcCCHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHCCCccHHHHHHHhcCCCEEEEEEeCCCH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChhhhhhcCCCCccCC
Q 032592 108 ITDWRALIGPTDAKKAKISHPHRLYVL 134 (137)
Q Consensus 108 V~~~r~l~Gp~dp~~A~~~~p~slRa~ 134 (137)
|++||+++|||||.+|. |+||||.
T Consensus 81 V~~~R~l~GpTdp~~A~---PgtIR~~ 104 (157)
T 3q8u_A 81 VNVSRHIIGSTNPSEAS---PGSIRGD 104 (157)
T ss_dssp HHHHHHHHCCSSTTTSC---TTSHHHH
T ss_pred HHHHHHHcCCCChhhcC---CCChHHH
Confidence 99999999999999996 9999983
No 7
>4fkx_A NDK B, nucleoside diphosphate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: CDP; 1.70A {Trypanosoma brucei brucei} PDB: 4fky_A* 4f4a_A* 4f36_A* 3prv_A 3ngs_A 3ngr_A 3ngt_A* 3ngu_A*
Probab=100.00 E-value=9.4e-38 Score=231.04 Aligned_cols=104 Identities=30% Similarity=0.563 Sum_probs=101.3
Q ss_pred cceEEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcCCCcHHHHHHHhhcCCEEEEEEeecc
Q 032592 27 EKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKEN 106 (137)
Q Consensus 27 ~~e~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvv~l~l~g~n 106 (137)
..|+||+|||||+++++++|+||++|+++||+|+++||+++++++|++||.+|++++||++|++||+|||+++|+|+|+|
T Consensus 10 ~~~rTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~n 89 (161)
T 4fkx_A 10 PSERTFIAVKPDGVQRNLVGEIIKRFENKGYKLVGLKLLQPTEEQAKQHYIDLASKPFYSGLVSYFSSGPIVGMVWEGLG 89 (161)
T ss_dssp TTCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTT
T ss_pred CcccEEEEECHHHhccCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCccHHHHHHHHhCCCcEEEEEeccC
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCChhhhhhcCCCCccC
Q 032592 107 AITDWRALIGPTDAKKAKISHPHRLYV 133 (137)
Q Consensus 107 aV~~~r~l~Gp~dp~~A~~~~p~slRa 133 (137)
||+.||+++|||||.+|. |+||||
T Consensus 90 aV~~~R~l~GpTdp~~A~---PgTIR~ 113 (161)
T 4fkx_A 90 VVKGGRVLLGATNPADSL---PGTIRG 113 (161)
T ss_dssp HHHHHHHHHCCSSGGGCC---TTSHHH
T ss_pred hHHHHHHHhcCCChhhcC---CCChhH
Confidence 999999999999999886 999997
No 8
>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: d.58.6.1 PDB: 1wkk_A* 1wkl_A*
Probab=100.00 E-value=9.2e-38 Score=226.01 Aligned_cols=103 Identities=36% Similarity=0.637 Sum_probs=100.6
Q ss_pred ceEEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcCCCcHHHHHHHhhcCCEEEEEEeeccH
Q 032592 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENA 107 (137)
Q Consensus 28 ~e~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvv~l~l~g~na 107 (137)
+|+||+|||||++.++++|+||++|+++||+|+++||+++++++|++||.+|++++||++|++||+|||+++++|+|+||
T Consensus 1 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtsGPvva~vl~g~~a 80 (137)
T 1wkj_A 1 MERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPGLVRFITSGPVVAMVLEGPGV 80 (137)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGSSSSSHHHHHHHHTSSCEEEEEEESTTH
T ss_pred CeeEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEeCCcH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChhhhhhcCCCCccC
Q 032592 108 ITDWRALIGPTDAKKAKISHPHRLYV 133 (137)
Q Consensus 108 V~~~r~l~Gp~dp~~A~~~~p~slRa 133 (137)
|++||+++|||||.+|. |+|||+
T Consensus 81 V~~~R~l~G~t~p~~A~---pgtiR~ 103 (137)
T 1wkj_A 81 VAEVRKMMGATHPKDAL---PGTIRG 103 (137)
T ss_dssp HHHHHHHHCCSSTTTCC---TTSHHH
T ss_pred HHHHHHHhCCCCCCcCC---CCcchH
Confidence 99999999999999995 999997
No 9
>1k44_A Nucleoside diphosphate kinase; nucleoside triphosphate, transferase; 2.60A {Mycobacterium tuberculosis} SCOP: d.58.6.1
Probab=100.00 E-value=1.5e-37 Score=224.65 Aligned_cols=103 Identities=37% Similarity=0.583 Sum_probs=100.5
Q ss_pred ceEEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcCCCcHHHHHHHhhcCCEEEEEEeeccH
Q 032592 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENA 107 (137)
Q Consensus 28 ~e~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvv~l~l~g~na 107 (137)
.|+||+|||||++.++++|+||++|+++||+|+++||+++++++|++||.+|++++||++|++||+|||+++++|+|+||
T Consensus 2 ~e~Tl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~~a 81 (136)
T 1k44_A 2 TERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSLLEFITSGPVVAAIVEGTRA 81 (136)
T ss_dssp CEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHTTTSCEEEEEEEETTH
T ss_pred ceEEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhccCCEEEEEEeCCCH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChh-hhhhcCCCCccC
Q 032592 108 ITDWRALIGPTDAK-KAKISHPHRLYV 133 (137)
Q Consensus 108 V~~~r~l~Gp~dp~-~A~~~~p~slRa 133 (137)
|+.||+++|||||. +|. |+|||+
T Consensus 82 V~~~R~l~G~t~p~~~A~---pgtiR~ 105 (136)
T 1k44_A 82 IAAVRQLAGGTDPVQAAA---PGTIRG 105 (136)
T ss_dssp HHHHHHHHCCSSTTTTSC---TTSHHH
T ss_pred HHHHHHHhCCCCccccCC---CCCcHH
Confidence 99999999999999 885 999997
No 10
>3l7u_A Nucleoside diphosphate kinase A; ATP-binding, nucleotide-binding, transferase, tumor suppressor; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.4e-37 Score=232.25 Aligned_cols=106 Identities=35% Similarity=0.569 Sum_probs=102.8
Q ss_pred cccceEEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcCCCcHHHHHHHhhcCCEEEEEEee
Q 032592 25 SVEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEK 104 (137)
Q Consensus 25 ~~~~e~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvv~l~l~g 104 (137)
.+..|+||+|||||++.++++|+||++|+++||+|+++||+++++++|++||.+|++++||++|++||+|||+++|+|+|
T Consensus 21 ~~~~ErTl~iIKPDav~r~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg 100 (172)
T 3l7u_A 21 MANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEG 100 (172)
T ss_dssp CGGGCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHHSSCEEEEEEES
T ss_pred cchhceEEEEEChHHHhcccHHHHHHHHHHcCCEEEEEEEEeCCHHHHHHHHHHhcCCchHHHHHHHHhcCCeEEEEEeC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHhCCCChhhhhhcCCCCccC
Q 032592 105 ENAITDWRALIGPTDAKKAKISHPHRLYV 133 (137)
Q Consensus 105 ~naV~~~r~l~Gp~dp~~A~~~~p~slRa 133 (137)
+|||+.||+++|||||.+|. |+||||
T Consensus 101 ~naV~~~R~l~GpTdp~~A~---PgTIR~ 126 (172)
T 3l7u_A 101 LNVVKTGRVMLGETNPADSK---PGTIRG 126 (172)
T ss_dssp TTHHHHHHHHHCCSSTTTCC---TTSHHH
T ss_pred CCHHHHHHHHcCCCChhhcC---CCChhH
Confidence 99999999999999999986 999997
No 11
>1ehw_A NDPK H4, nucleoside diphosphate kinase; NM23, mitochondrial, killer-O transferase; 2.40A {Homo sapiens} SCOP: d.58.6.1
Probab=100.00 E-value=2.1e-37 Score=229.54 Aligned_cols=105 Identities=31% Similarity=0.567 Sum_probs=102.0
Q ss_pred ccceEEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcCCCcHHHHHHHhhcCCEEEEEEeec
Q 032592 26 VEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKE 105 (137)
Q Consensus 26 ~~~e~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvv~l~l~g~ 105 (137)
...|+||+|||||++.++++|+||++|+++||+|+++||+++++++|++||.+|++++||++|++||+|||+++|+|+|+
T Consensus 22 ~~~ErTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~ 101 (162)
T 1ehw_A 22 GTRERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGY 101 (162)
T ss_dssp GGGCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEST
T ss_pred chhceEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHHcCCCEEEEEEech
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhCCCChhhhhhcCCCCccC
Q 032592 106 NAITDWRALIGPTDAKKAKISHPHRLYV 133 (137)
Q Consensus 106 naV~~~r~l~Gp~dp~~A~~~~p~slRa 133 (137)
|||++||+++|||||.+|. |+|||+
T Consensus 102 naV~~~R~l~G~T~p~~A~---PgtIR~ 126 (162)
T 1ehw_A 102 NVVRASRAMIGHTDSAEAA---PGTIRG 126 (162)
T ss_dssp THHHHHHHHHCCSSGGGSC---TTSHHH
T ss_pred hHHHHHHHHhCCCCCCCCC---CCChHH
Confidence 9999999999999999986 999997
No 12
>1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP; 1.90A {Myxococcus xanthus} SCOP: d.58.6.1 PDB: 1nlk_R* 2nck_R 3pj9_A
Probab=100.00 E-value=2.4e-37 Score=225.46 Aligned_cols=103 Identities=38% Similarity=0.605 Sum_probs=100.7
Q ss_pred ceEEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcCCCcHHHHHHHhhcCCEEEEEEeeccH
Q 032592 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENA 107 (137)
Q Consensus 28 ~e~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvv~l~l~g~na 107 (137)
.|+||+|||||++.++++|+||++|+++||+|+++||+++++++|++||.+|++++||++|++||+|||+++++|+|+||
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~~a 81 (144)
T 1nhk_R 2 IERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKDLVQFMISGPVVLMVLEGENA 81 (144)
T ss_dssp EEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETH
T ss_pred ceEEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhccCCEEEEEEeccCH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChhhhhhcCCCCccC
Q 032592 108 ITDWRALIGPTDAKKAKISHPHRLYV 133 (137)
Q Consensus 108 V~~~r~l~Gp~dp~~A~~~~p~slRa 133 (137)
|+.||+++|||||.+|. |+||||
T Consensus 82 V~~~R~l~G~t~p~~A~---pgtIR~ 104 (144)
T 1nhk_R 82 VLANRDIMGATNPAQAA---EGTIRK 104 (144)
T ss_dssp HHHHHHHHCCSSGGGCC---TTSHHH
T ss_pred HHHHHHHhCCCCCCcCC---CCcchH
Confidence 99999999999999995 999997
No 13
>2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer, signaling protein,transferase; 1.62A {Escherichia coli}
Probab=100.00 E-value=2.3e-37 Score=225.07 Aligned_cols=103 Identities=36% Similarity=0.640 Sum_probs=100.7
Q ss_pred ceEEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcCCCcHHHHHHHhhcCCEEEEEEeeccH
Q 032592 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENA 107 (137)
Q Consensus 28 ~e~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvv~l~l~g~na 107 (137)
.|+||+|||||++.++++|+||++|+++||+|+++||+++++++|++||.+|++++||++|++||+|||+++++|+|+||
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~~a 81 (142)
T 2hur_A 2 IERTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLEGENA 81 (142)
T ss_dssp EEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETH
T ss_pred ceEEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCCchHHHHHHhcCCCEEEEEEecccH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChhhhhhcCCCCccC
Q 032592 108 ITDWRALIGPTDAKKAKISHPHRLYV 133 (137)
Q Consensus 108 V~~~r~l~Gp~dp~~A~~~~p~slRa 133 (137)
|+.||+++|||||.+|. |+|||+
T Consensus 82 V~~~R~l~G~t~p~~A~---pgtiR~ 104 (142)
T 2hur_A 82 VQRHRDLLGATNPANAL---AGTLRA 104 (142)
T ss_dssp HHHHHHHHCCSSTTTSC---TTSHHH
T ss_pred HHHHHHHhCCCCcccCC---CCcchH
Confidence 99999999999999995 999997
No 14
>1pku_A Nucleoside diphosphate kinase I; RICE, transferase; 2.50A {Oryza sativa} SCOP: d.58.6.1
Probab=100.00 E-value=3.3e-37 Score=226.12 Aligned_cols=103 Identities=31% Similarity=0.555 Sum_probs=100.8
Q ss_pred ceEEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcCCCcHHHHHHHhhcCCEEEEEEeeccH
Q 032592 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENA 107 (137)
Q Consensus 28 ~e~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvv~l~l~g~na 107 (137)
+|+||+|||||++.++++|+||++|+++||+|+++||+++++++|++||.+|++++||++|++||+|||+++|+|+|+||
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~rie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vleg~~a 81 (150)
T 1pku_A 2 MEQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPGLVEYIISGPVVAMVWEGKDV 81 (150)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHSGGGTTSTTHHHHHHHHHSSCEEEEEEESTTH
T ss_pred ceEEEEEEChhHhccccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCCccHHHHHHhcCCCEEEEEEeccch
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChhhhhhcCCCCccC
Q 032592 108 ITDWRALIGPTDAKKAKISHPHRLYV 133 (137)
Q Consensus 108 V~~~r~l~Gp~dp~~A~~~~p~slRa 133 (137)
|+.||+++|||||..|. |+||||
T Consensus 82 V~~~R~l~G~t~p~~A~---pgtIR~ 104 (150)
T 1pku_A 82 VATGRRIIGATRPWEAA---PGTIRA 104 (150)
T ss_dssp HHHHHHHHCCSSGGGSC---TTSHHH
T ss_pred HHHHHHHhCCCCcccCC---CCChHH
Confidence 99999999999999995 999997
No 15
>1s57_A Nucleoside diphosphate kinase II; transferase; HET: EPE; 1.80A {Arabidopsis thaliana} SCOP: d.58.6.1 PDB: 1s59_A*
Probab=100.00 E-value=3.9e-37 Score=226.33 Aligned_cols=104 Identities=34% Similarity=0.572 Sum_probs=101.6
Q ss_pred cceEEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcCCCcHHHHHHHhhcCCEEEEEEeecc
Q 032592 27 EKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKEN 106 (137)
Q Consensus 27 ~~e~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvv~l~l~g~n 106 (137)
..|+||+|||||++.++++|+||++|+++||+|+++||+++++++|++||.+|++++||++|++||+|||+++|+++|+|
T Consensus 4 ~~erTl~iIKPDav~~~l~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~~ 83 (153)
T 1s57_A 4 DVEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPNLIEYITSGPVVCMAWEGVG 83 (153)
T ss_dssp CCEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSSSHHHHHHHHTSSCEEEEEEEETT
T ss_pred ccceEEEEEChhHhhcccHHHHHHHHHHcCCEehhhhhCCCCHHHHHHHHHHhcCCCcchhHHHHhcCCCEEEEEEeccc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCChhhhhhcCCCCccC
Q 032592 107 AITDWRALIGPTDAKKAKISHPHRLYV 133 (137)
Q Consensus 107 aV~~~r~l~Gp~dp~~A~~~~p~slRa 133 (137)
||+.||+++|||||..|+ |+|||+
T Consensus 84 aV~~~R~l~G~t~p~~A~---pgtIR~ 107 (153)
T 1s57_A 84 VVASARKLIGKTDPLQAE---PGTIRG 107 (153)
T ss_dssp HHHHHHHHHCCSSTTTSC---TTSHHH
T ss_pred HHHHHHHHhCCCCccccC---CcchHH
Confidence 999999999999999997 999997
No 16
>2vu5_A Nucleoside diphosphate kinase; nucleotide-binding, ATP-binding, metal-binding, phosphoprotein, nucleotide metabolism, cytoplasm, magnesium; 2.0A {Bacillus anthracis}
Probab=100.00 E-value=2.5e-37 Score=226.27 Aligned_cols=103 Identities=33% Similarity=0.612 Sum_probs=100.5
Q ss_pred ceEEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcCCCcHHHHHHHhhcCCEEEEEEeeccH
Q 032592 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENA 107 (137)
Q Consensus 28 ~e~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvv~l~l~g~na 107 (137)
+|+||+|||||++.++++|+||++|+++||+|+++||+++++++|++||.+|++++||++|++||+|||+++|+++|+||
T Consensus 1 ~ErTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vleg~~a 80 (148)
T 2vu5_A 1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHEEKPFFGELVDFITSGPVFAMVWQGEGV 80 (148)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHTGGGTTTCTHHHHHHHHHTTCCEEEEEEESTTH
T ss_pred CeEEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEeccCh
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChhhhhhcCCCCccC
Q 032592 108 ITDWRALIGPTDAKKAKISHPHRLYV 133 (137)
Q Consensus 108 V~~~r~l~Gp~dp~~A~~~~p~slRa 133 (137)
|+.||+++|||||.+|. |+|||+
T Consensus 81 V~~~R~l~G~t~p~~a~---pgtIR~ 103 (148)
T 2vu5_A 81 VDTARNMMGKTRPHEAA---PGTIRG 103 (148)
T ss_dssp HHHHHHHHCCSSTTTSC---TTSHHH
T ss_pred HHHHHHHhCCCCccccC---CCChHH
Confidence 99999999999999986 999996
No 17
>3r9l_A Nucleoside diphosphate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, giardiasis; 2.65A {Giardia lamblia} SCOP: d.58.6.1
Probab=100.00 E-value=7.4e-38 Score=230.52 Aligned_cols=106 Identities=31% Similarity=0.550 Sum_probs=75.3
Q ss_pred cccceEEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcCCCcHHHHHHHhhcCCEEEEEEee
Q 032592 25 SVEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEK 104 (137)
Q Consensus 25 ~~~~e~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvv~l~l~g 104 (137)
+...|+||+|||||++.++++|+||++|+++||+|+++||+++++++|++||.+|++++||++|++||+|||+++|+|+|
T Consensus 4 ~m~~ErTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg 83 (155)
T 3r9l_A 4 SMARERTFLMVKPDGVQRGLVGEIISRFERRGFKLVAMKFFVPSKNLVEEHYKEHAARPFFAGLCKFLSSGPVCAMVWEG 83 (155)
T ss_dssp -CCSCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEECC---------------------------CCSCCEEEEEES
T ss_pred ccchheEEEEEChHHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCccHHHHHHHhcCCCEEEEEEeC
Confidence 45579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHhCCCChhhhhhcCCCCccC
Q 032592 105 ENAITDWRALIGPTDAKKAKISHPHRLYV 133 (137)
Q Consensus 105 ~naV~~~r~l~Gp~dp~~A~~~~p~slRa 133 (137)
+|||++||+++|||||.+|. |+|||+
T Consensus 84 ~naV~~~R~l~G~t~p~~a~---PgtIR~ 109 (155)
T 3r9l_A 84 ANVVSISRTMMGVTKPAESA---PGTIRG 109 (155)
T ss_dssp TTHHHHHHHHHCCSCTTTCC---TTSHHH
T ss_pred CCHHHHHHHhcCCCChhhcC---CCChhH
Confidence 99999999999999999886 999997
No 18
>1xiq_A Nucleoside diphosphate kinase B; protein structure initiative, structural genomics, SGPP; 3.05A {Plasmodium falciparum} SCOP: d.58.6.1
Probab=100.00 E-value=2.9e-37 Score=227.78 Aligned_cols=104 Identities=31% Similarity=0.522 Sum_probs=101.3
Q ss_pred cceEEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcCCCcHHHHHHHhhcCCEEEEEEeecc
Q 032592 27 EKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKEN 106 (137)
Q Consensus 27 ~~e~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvv~l~l~g~n 106 (137)
.+|+||+|||||++.++++|+||++|+++||+|+++||+++++++|++||.+|++++||++|++||+|||+++|+++|+|
T Consensus 8 ~~~~Tl~iIKPDav~r~lvGeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~n 87 (157)
T 1xiq_A 8 HMEKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPTEEILKEHYKELSDQPFFKNLVAYISKGPVVAMVWEGVD 87 (157)
T ss_dssp -CCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGSSSSSCTTHHHHHTTSCEEEEEEESTT
T ss_pred hhheEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHHcCCCEEEEEEeccc
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCChhhhhhcCCCCccC
Q 032592 107 AITDWRALIGPTDAKKAKISHPHRLYV 133 (137)
Q Consensus 107 aV~~~r~l~Gp~dp~~A~~~~p~slRa 133 (137)
||+.||+++|||||.+|. |+|||+
T Consensus 88 aV~~~R~l~G~T~p~~A~---pgtIR~ 111 (157)
T 1xiq_A 88 MVKQGRKLIGETNPLTSN---TGTIRG 111 (157)
T ss_dssp HHHHHHHHHCCSSTTTSC---TTSHHH
T ss_pred chHHHHHHcCCCCCCcCC---CCChHH
Confidence 999999999999999996 999997
No 19
>3b54_A NDK, NDP kinase, nucleoside diphosphate kinase; alpha/beta sandwich, ATP-binding, magnesium, metal-B mitochondrion; 3.10A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-37 Score=229.25 Aligned_cols=106 Identities=27% Similarity=0.556 Sum_probs=95.8
Q ss_pred cccceEEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcCCCcHHHHHHHhhcCCEEEEEEee
Q 032592 25 SVEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEK 104 (137)
Q Consensus 25 ~~~~e~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvv~l~l~g 104 (137)
++..|+||+|||||++.++++|+||++|+++||+|+++||+++++++|++||.+|++++||++|++||+|||+++|+++|
T Consensus 10 ~~~~erTl~iIKPDav~~~liGeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg 89 (161)
T 3b54_A 10 SSQTERTFIAVKPDGVQRGLVSQILSRFEKKGYKLVAIKLVKADDKLLEQHYAEHVGKPFFPKMVSFMKSGPILATVWEG 89 (161)
T ss_dssp CCCCCEEEEEECHHHHHHTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHCC-------CHHHHHHHHSSCEEEEEEES
T ss_pred ccccceEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHhcCCCEEEEEEec
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHhCCCChhhhhhcCCCCccC
Q 032592 105 ENAITDWRALIGPTDAKKAKISHPHRLYV 133 (137)
Q Consensus 105 ~naV~~~r~l~Gp~dp~~A~~~~p~slRa 133 (137)
+|||+.||+++|||||..|. |+|||+
T Consensus 90 ~naV~~~R~l~G~t~p~~a~---pgtIR~ 115 (161)
T 3b54_A 90 KDVVRQGRTILGATNPLGSA---PGTIRG 115 (161)
T ss_dssp TTHHHHHHHHHCCSSGGGSC---TTSHHH
T ss_pred cChHHHHHHHhCCCCcccCC---CCChHH
Confidence 99999999999999999986 999997
No 20
>1u8w_A Nucleoside diphosphate kinase I; nucleotide diphosphate, transferase; 2.40A {Arabidopsis thaliana} SCOP: d.58.6.1
Probab=100.00 E-value=3.6e-37 Score=225.69 Aligned_cols=103 Identities=33% Similarity=0.576 Sum_probs=100.7
Q ss_pred ceEEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcCCCcHHHHHHHhhcCCEEEEEEeeccH
Q 032592 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENA 107 (137)
Q Consensus 28 ~e~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvv~l~l~g~na 107 (137)
+|+||+|||||++.++++|+||++|+++||+|+++||+++++++|++||.+|++++||++|++||+|||+++|+++|+||
T Consensus 1 ~e~Tl~iIKPdav~~~~~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~~~~kpff~~Lv~~mtSGPvva~vleg~~a 80 (149)
T 1u8w_A 1 MEQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSGLVDYIVSGPVVAMIWEGKNV 80 (149)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTCTTSSSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred CeeEEEEECchHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCcchhHHhHhcCCCEEEEEEecCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChhhhhhcCCCCccC
Q 032592 108 ITDWRALIGPTDAKKAKISHPHRLYV 133 (137)
Q Consensus 108 V~~~r~l~Gp~dp~~A~~~~p~slRa 133 (137)
|+.||+++|||||..|. |+|||+
T Consensus 81 V~~~R~l~G~t~p~~A~---pgtIR~ 103 (149)
T 1u8w_A 81 VLTGRKIIGATNPAASE---PGTIRG 103 (149)
T ss_dssp HHHHHHHHCCSSTTTCC---TTSHHH
T ss_pred hHHHHHHhCCCCcccCC---CCCcHH
Confidence 99999999999999996 999997
No 21
>3js9_A Nucleoside diphosphate kinase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, babesiosis; 2.50A {Babesia bovis} SCOP: d.58.6.0
Probab=100.00 E-value=6.1e-37 Score=225.82 Aligned_cols=104 Identities=28% Similarity=0.465 Sum_probs=101.3
Q ss_pred cceEEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcCCCcHHHHHHHhhcCCEEEEEEeecc
Q 032592 27 EKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKEN 106 (137)
Q Consensus 27 ~~e~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvv~l~l~g~n 106 (137)
.+|+|++|||||++.++++|+||++|+++||+|+++||+++|+++|++||.+|++++||++|++||+|||+++|+++|+|
T Consensus 8 ~~~~~~~iIKPDaV~r~~vGeIi~rie~~Gf~Iva~K~~~lt~e~a~~fY~~h~~kpff~~Lv~fmtSGPvvamvleg~n 87 (156)
T 3js9_A 8 HMERTYIMVKPDGVQRGLIGEILKRFEMKGLKLIAAKFEHPTMDVVAQHYCEHKDKPFFKDLCDFISHGPVFCMIWEGPE 87 (156)
T ss_dssp -CEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHHHCCEEEEEEEETT
T ss_pred chhcceEEEChHHHhcccHHHHHHHHHHcCCEEEEEEEecCCHHHHHHHHHHhcCCccHHHHHHHHhcCCCEEEEEeccc
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCChhhhhhcCCCCccC
Q 032592 107 AITDWRALIGPTDAKKAKISHPHRLYV 133 (137)
Q Consensus 107 aV~~~r~l~Gp~dp~~A~~~~p~slRa 133 (137)
||++||+++|||||.+|. |+|||+
T Consensus 88 aV~~~R~l~G~T~p~~A~---PgTIR~ 111 (156)
T 3js9_A 88 AIKIGRNLVGLTSPVESA---AGTIRG 111 (156)
T ss_dssp HHHHHHHHHCCSSGGGSC---TTSHHH
T ss_pred hHHHHHHhcCCCCccccC---CCCHHH
Confidence 999999999999999986 999997
No 22
>2dxe_A Nucleoside diphosphate kinase; nucleoside binding, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: d.58.6.1 PDB: 2dxd_A* 2cwk_A* 2dxf_A* 2dy9_A* 2dya_A*
Probab=100.00 E-value=6.7e-37 Score=226.52 Aligned_cols=104 Identities=36% Similarity=0.581 Sum_probs=101.3
Q ss_pred cceEEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcCCCcHHHHHHHhhcCCEEEEEEeecc
Q 032592 27 EKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKEN 106 (137)
Q Consensus 27 ~~e~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvv~l~l~g~n 106 (137)
..|+||+|||||++.++++|+||++|+++||+|+++||+++++++|++||.+|++++||++|++||+|||+++++++|+|
T Consensus 6 ~~erTl~iIKPDav~~~l~G~Ii~rie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~~ 85 (160)
T 2dxe_A 6 ETERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFKALIDYITKTPVVVMVLEGRY 85 (160)
T ss_dssp CEEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEET
T ss_pred cCCeEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEeccC
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCChhhhhhcCCCCccC
Q 032592 107 AITDWRALIGPTDAKKAKISHPHRLYV 133 (137)
Q Consensus 107 aV~~~r~l~Gp~dp~~A~~~~p~slRa 133 (137)
||+.||+++|||||.+|. |+||||
T Consensus 86 aV~~~R~l~G~t~p~~a~---pgtIR~ 109 (160)
T 2dxe_A 86 AVEVVRKMAGATDPKDAA---PGTIRG 109 (160)
T ss_dssp HHHHHHHHHCCSSGGGSC---TTSHHH
T ss_pred HHHHHHHHhCCCCCCcCC---CCChHH
Confidence 999999999999999986 999997
No 23
>3bbb_A Nucleoside diphosphate kinase B; transcription factor, cancer, NM23 GEN, hexamer, activator, oncogene, ATP-binding, cell cycle, DNA-binding; HET: DG DA; 1.30A {Homo sapiens} SCOP: d.58.6.1 PDB: 1nue_A* 3bbf_A* 1nsk_R 3bbc_A 1be4_A* 1bhn_A* 2hvd_A* 1jxv_A* 2hve_A* 1ucn_A* 1nsq_A* 1ndl_A*
Probab=100.00 E-value=7.1e-37 Score=224.53 Aligned_cols=104 Identities=36% Similarity=0.602 Sum_probs=101.5
Q ss_pred cceEEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcCCCcHHHHHHHhhcCCEEEEEEeecc
Q 032592 27 EKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKEN 106 (137)
Q Consensus 27 ~~e~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvv~l~l~g~n 106 (137)
..|+||+|||||++.++++|+||++|+++||+|+++||+++++++|++||.+|++++||++|++||+|||+++|+++|+|
T Consensus 2 ~~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~~ 81 (151)
T 3bbb_A 2 NLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLN 81 (151)
T ss_dssp TTCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTT
T ss_pred CcceEEEEEChhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCCchHHHHHHHccCCEEEEEEecCC
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCChhhhhhcCCCCccC
Q 032592 107 AITDWRALIGPTDAKKAKISHPHRLYV 133 (137)
Q Consensus 107 aV~~~r~l~Gp~dp~~A~~~~p~slRa 133 (137)
||+.||+++|||||..|+ |+|||+
T Consensus 82 aV~~~R~l~G~t~p~~a~---pgtIR~ 105 (151)
T 3bbb_A 82 VVKTGRVMLGETNPADSK---PGTIRG 105 (151)
T ss_dssp HHHHHHHHHCCSSGGGCC---TTSHHH
T ss_pred HHHHHHHHhCCCCcccCC---CCCcHH
Confidence 999999999999999988 999997
No 24
>1w7w_A Nucleoside diphosphate kinase; NDPK3, transferase; 2.80A {Pisum sativum} SCOP: d.58.6.1
Probab=100.00 E-value=8e-37 Score=230.03 Aligned_cols=108 Identities=35% Similarity=0.542 Sum_probs=102.6
Q ss_pred CCcccceEEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcCCCcHHHHHHHhhcCCEEEEEE
Q 032592 23 NGSVEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVL 102 (137)
Q Consensus 23 ~~~~~~e~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvv~l~l 102 (137)
..+...|+||+|||||++.++++|+||++|+++||+|+++||+++++++|++||.+|++++||++|+++|+|||+++|+|
T Consensus 27 ~~~~~~erTl~iIKPDav~r~liGeIi~rie~~Gf~Iv~~K~~~ls~e~A~~fY~~h~~kpff~~Lv~~mtSGPvvamvl 106 (182)
T 1w7w_A 27 DPEAELERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPFFNGLCDFLSSGPVIAMVW 106 (182)
T ss_dssp ---CTTCEEEEEECHHHHHTTCHHHHHHHHHTTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEE
T ss_pred cccchhceEEEEEChHHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHHcCCCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccHHHHHHHHhCCCChhhhhhcCCCCccC
Q 032592 103 EKENAITDWRALIGPTDAKKAKISHPHRLYV 133 (137)
Q Consensus 103 ~g~naV~~~r~l~Gp~dp~~A~~~~p~slRa 133 (137)
+|+|||++||+++|||||.+|. |+||||
T Consensus 107 eG~naV~~~R~l~G~T~p~~A~---PgTIR~ 134 (182)
T 1w7w_A 107 EGEGVITYGRKLIGATDPQKSA---PGTIRG 134 (182)
T ss_dssp ESTTHHHHHHHHHCCSSGGGSC---TTSHHH
T ss_pred ecccHHHHHHHHhCCCCCCCCC---CCChHH
Confidence 9999999999999999999995 999997
No 25
>2az3_A Nucleoside diphosphate kinase; halophilic, transferase; HET: CDP; 2.20A {Halobacterium salinarum} SCOP: d.58.6.1 PDB: 2az1_A 2zua_A
Probab=100.00 E-value=1.1e-36 Score=226.18 Aligned_cols=105 Identities=36% Similarity=0.641 Sum_probs=101.6
Q ss_pred ccceEEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcCCCcHHHHHHHhhcCCEEEEEEeec
Q 032592 26 VEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKE 105 (137)
Q Consensus 26 ~~~e~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvv~l~l~g~ 105 (137)
...|+||+|||||++.++++|+||++|+++||+|+++||+++++++|++||.+|++++||++|++||+|||+++|+++|+
T Consensus 6 ~~~e~Tl~iIKPDav~~~~~GeIi~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~ 85 (164)
T 2az3_A 6 DHDERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFFDGLVSFITSGPVFAMVWEGA 85 (164)
T ss_dssp -CCCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEST
T ss_pred CccceEEEEEChhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHHcCCCEEEEEEccc
Confidence 44699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhCCCChhhhhhcCCCCccC
Q 032592 106 NAITDWRALIGPTDAKKAKISHPHRLYV 133 (137)
Q Consensus 106 naV~~~r~l~Gp~dp~~A~~~~p~slRa 133 (137)
|||+.||+++|||||..|. |+|||+
T Consensus 86 ~aV~~~R~l~G~t~p~~a~---pgtIR~ 110 (164)
T 2az3_A 86 DATRQVRQLMGATDAQDAA---PGTIRG 110 (164)
T ss_dssp THHHHHHHHHCCSSGGGSC---TTSHHH
T ss_pred cHHHHHHHHhCCCCccccC---CCcchh
Confidence 9999999999999999986 999997
No 26
>1zs6_A Nucleoside diphosphate kinase 3; nucleotide metabolism, apoptosis, transferase, struc genomics, structural genomics consortium, SGC; HET: ADP; 2.30A {Homo sapiens} SCOP: d.58.6.1
Probab=100.00 E-value=1.2e-36 Score=226.79 Aligned_cols=106 Identities=34% Similarity=0.573 Sum_probs=103.1
Q ss_pred cccceEEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcCCCcHHHHHHHhhcCCEEEEEEee
Q 032592 25 SVEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEK 104 (137)
Q Consensus 25 ~~~~e~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvv~l~l~g 104 (137)
....|+||+|||||++.++++|+||++|+++||+|+++||+++++++|++||.+|++++||++|++||+|||+++++++|
T Consensus 18 ~~~~erTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg 97 (169)
T 1zs6_A 18 TGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQG 97 (169)
T ss_dssp CGGGCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEES
T ss_pred hhhhccEEEEEChhhhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEec
Confidence 46689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHhCCCChhhhhhcCCCCccC
Q 032592 105 ENAITDWRALIGPTDAKKAKISHPHRLYV 133 (137)
Q Consensus 105 ~naV~~~r~l~Gp~dp~~A~~~~p~slRa 133 (137)
+|||+.||+++|||||.+|. |+|||+
T Consensus 98 ~~aV~~~R~l~G~t~p~~A~---pgtIR~ 123 (169)
T 1zs6_A 98 LDVVRTSRALIGATNPADAP---PGTIRG 123 (169)
T ss_dssp TTHHHHHHHHHCCSSGGGSC---TTSHHH
T ss_pred CCchHHHHHHhCCCCcccCC---CCChHH
Confidence 99999999999999999996 999997
No 27
>1nb2_A Nucleoside diphosphate kinase; bacillus halodenitrifians, transferase; 2.20A {Virgibacillus halodenitrificans} SCOP: d.58.6.1
Probab=100.00 E-value=3.1e-37 Score=226.19 Aligned_cols=103 Identities=36% Similarity=0.570 Sum_probs=100.8
Q ss_pred ceEEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcCCCcHHHHHHHhhcCCEEEEEEeeccH
Q 032592 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENA 107 (137)
Q Consensus 28 ~e~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvv~l~l~g~na 107 (137)
+|+||+|||||++.++++|+||++|+++||+|+++||+++++++|++||.+|++++||++|++||+|||+++|+|+|+||
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~na 81 (150)
T 1nb2_A 2 KERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVISKDGAAAHYAELGGGPFFGGLVGGATSGPVFAMVWEGLNA 81 (150)
T ss_dssp CCCEEEEECHHHHHTTCHHHHHHHHHTTTCEEEEEECCCCTTHHHHHHTCTTSSSTTHHHHHHHHTSSCCBEEEEESTTH
T ss_pred ceEEEEEEChhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEecCCH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChhhhhhcCCCCccC
Q 032592 108 ITDWRALIGPTDAKKAKISHPHRLYV 133 (137)
Q Consensus 108 V~~~r~l~Gp~dp~~A~~~~p~slRa 133 (137)
|+.||+++|||||.+|. |+||||
T Consensus 82 V~~~R~l~G~t~p~~a~---pgtIR~ 104 (150)
T 1nb2_A 82 AATARQILGATNPSDAA---PGTIRG 104 (150)
T ss_dssp HHHHHHHHCCSSTTSSC---TTSHHH
T ss_pred HHHHHHHhCCCCcccCC---CCChHH
Confidence 99999999999999986 999997
No 28
>4dz6_A Nucleoside diphosphate kinase; ssgcid, niaid, vanada transition state mimic, transition state analog, transferas; HET: ADP; 2.20A {Borrelia burgdorferi} PDB: 4di6_A*
Probab=100.00 E-value=2.3e-36 Score=228.74 Aligned_cols=107 Identities=29% Similarity=0.450 Sum_probs=103.2
Q ss_pred cccceEEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHH-----HhcCCCcHHHHHHHhhcCCEEE
Q 032592 25 SVEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYA-----EHSSRSFFSSLIKYMTSGPVLA 99 (137)
Q Consensus 25 ~~~~e~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~-----~~~~~~~~~~lv~~~~sGpvv~ 99 (137)
+...|+||+|||||++.++++|+||++|+++||+|+++||+++|+++|++||. +|++++||++|++||+||||++
T Consensus 23 ~~~~ErTl~iIKPDav~r~l~G~Ii~rie~~Gf~Iva~K~~~ls~e~a~~fY~~~~~~~h~~kpff~~Lv~~mtSGPvva 102 (190)
T 4dz6_A 23 SMLLQKTLCIVKPDGVRRGLIGDVVSRFERVGLKMVAAKMLIVDESLAKKHYLYDDIVFRHSEAVWNSLIKFISNSPVFT 102 (190)
T ss_dssp CTTEEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEEECCHHHHHHHSCHHHHHHHTCHHHHHHHHHHHTTSEEEE
T ss_pred cchhhcEEEEEChHHHhcCcHHHHHHHHHHcCCEEEEEEEecCCHHHHHHHhcccccHHhcCccHHHHHHHHhcCCCEEE
Confidence 44579999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred EEEeeccHHHHHHHHhCCCChhhhhhcCCCCccCC
Q 032592 100 MVLEKENAITDWRALIGPTDAKKAKISHPHRLYVL 134 (137)
Q Consensus 100 l~l~g~naV~~~r~l~Gp~dp~~A~~~~p~slRa~ 134 (137)
|+|+|+|||++||+++|||||.+|. |+||||.
T Consensus 103 mvleG~naV~~~R~l~GpTdP~~A~---PgTIRg~ 134 (190)
T 4dz6_A 103 FVVEGVESIEVVRKLCGATEPKLAI---PGTIRGD 134 (190)
T ss_dssp EEEEEETHHHHHHHHHCCSSGGGSC---TTSHHHH
T ss_pred EEEecCCHHHHHHHHcCCCChhhcC---CCChHHH
Confidence 9999999999999999999999996 9999973
No 29
>1xqi_A Nucleoside diphosphate kinase; alpha/beta sandwich, ferredoxin fold, transferase; HET: PGE; 2.50A {Pyrobaculum aerophilum} SCOP: d.58.6.1
Probab=100.00 E-value=3.5e-34 Score=217.81 Aligned_cols=104 Identities=34% Similarity=0.534 Sum_probs=100.9
Q ss_pred cceEEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHH-------------H----------------
Q 032592 27 EKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFY-------------A---------------- 77 (137)
Q Consensus 27 ~~e~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y-------------~---------------- 77 (137)
..|+||+|||||++.++++|+||++|+++||+|+++||+++++++|++|| .
T Consensus 14 ~~erTlviIKPDav~r~l~G~Ii~r~e~~Gf~Iv~~K~~~ls~~~a~~fY~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~ 93 (195)
T 1xqi_A 14 PVEKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKMVKASPEEIERFYPSSEEWLQSAGQKLLKAYQELGIDPRAKIG 93 (195)
T ss_dssp CCCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCCHHHHHS
T ss_pred hhhcEEEEEchhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHhcchhhhhhhhHHHHHHHHHHhCCChhhhhc
Confidence 35999999999999999999999999999999999999999999999999 8
Q ss_pred ----HhcCCCcHHHHHHHhhcCCEEEEEEeeccHHHHHHHHhCCCChhhhhhcCCCCccC
Q 032592 78 ----EHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHRLYV 133 (137)
Q Consensus 78 ----~~~~~~~~~~lv~~~~sGpvv~l~l~g~naV~~~r~l~Gp~dp~~A~~~~p~slRa 133 (137)
+|.+++||+++++||+||||++++++|+|||++||+++|||||.+|. |+|||+
T Consensus 94 ~~~~~~~gk~ff~~Lv~~mtsGPvvamvleG~~aV~~~R~l~GpTdP~~A~---pgTIRg 150 (195)
T 1xqi_A 94 TDDPVEVGRIIKRNLVKYMTSGPNVVMVLKGNRAVEIVRKLVGPTSPHSAP---PGTIRG 150 (195)
T ss_dssp CCCHHHHHHHHHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSCGGGSC---TTSHHH
T ss_pred cccchhcCCcchHHHHHHHcCCCEEEEEEechhHHHHHHHHhCCCCCCcCC---CCchhH
Confidence 88999999999999999999999999999999999999999999996 999997
No 30
>3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein and GTPase, retinitis pigmentosa, GTP-binding, lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens} PDB: 3bh6_B* 2bx6_A
Probab=99.92 E-value=1.4e-25 Score=183.35 Aligned_cols=90 Identities=13% Similarity=0.328 Sum_probs=86.3
Q ss_pred ccceEEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcCCCcHHHHHHHhhcCCEEEEEEeec
Q 032592 26 VEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKE 105 (137)
Q Consensus 26 ~~~e~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvv~l~l~g~ 105 (137)
...|+||+|||||++.++++|+||++|+++||+|+++||+++++++|++||.+|+ ++|++||+|||+++++++|+
T Consensus 233 ~~~erTl~iiKPd~v~r~~iG~Ii~r~e~~G~~i~~~K~~~ls~~~a~~~Y~~h~-----~~Lv~~mtsGPvva~vleG~ 307 (352)
T 3bh7_B 233 SSDESCLVVLFAGDYTIANARKLIDEMVGKGFFLVQTKEVSMKAEDAQRVFREKA-----PDFLPLLNKGPVIALEFNGD 307 (352)
T ss_dssp SCCCEEEEEECCSTTHHHHHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHGGGG-----GGTGGGGGGSCEEEEEEEST
T ss_pred ccccceEEEEcchHhhhcCHHHHHHHHHHCCCEEEEeEeccCCHHHHHHHHHHHH-----HHHHHHhccCCEEEEEEECc
Confidence 5569999999999999888999999999999999999999999999999999997 67999999999999999999
Q ss_pred cHHHHHHHHhCCCCh
Q 032592 106 NAITDWRALIGPTDA 120 (137)
Q Consensus 106 naV~~~r~l~Gp~dp 120 (137)
|||+.||+++|+|+|
T Consensus 308 ~av~~~R~l~g~t~p 322 (352)
T 3bh7_B 308 GAVEVCQLIVNEIFN 322 (352)
T ss_dssp THHHHHHHHHHHHCT
T ss_pred CHHHHHHHHhcCCCC
Confidence 999999999999986
No 31
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=73.78 E-value=3.6 Score=26.66 Aligned_cols=43 Identities=9% Similarity=0.160 Sum_probs=36.6
Q ss_pred EEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHH
Q 032592 30 KTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFY 76 (137)
Q Consensus 30 ~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y 76 (137)
..+++++|..++. +.+|.+.|.+..-.|.++. .++.++|+++.
T Consensus 5 ~~Ivv~~P~sy~D--a~~I~d~Lr~~~~VvvNL~--~ld~~~AqRiv 47 (87)
T 3p04_A 5 STIVPVELHSFED--AQVIGGAFRDGDAVVFDMS--LLSREEARRIV 47 (87)
T ss_dssp CSCEEEECSSGGG--HHHHHHHHHTTCCEEEECT--TSCHHHHHHHH
T ss_pred cEEEEEecCcHHH--HHHHHHHHHCCCEEEEECC--CCCHHHHHHHH
Confidence 4579999999976 7899999999888888887 56899998885
No 32
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=49.47 E-value=26 Score=26.39 Aligned_cols=52 Identities=10% Similarity=-0.001 Sum_probs=28.5
Q ss_pred CCcCCCCCcccceEEEEEEcCC-ccCCCchHHHHHHHHHcCCeEEEEEEeecCH
Q 032592 17 PCRSLSNGSVEKEKTLAMIKPD-GLSGNYTDEIKKVILESGFSILRERVVRLDE 69 (137)
Q Consensus 17 ~~~~~~~~~~~~e~tlvlIKPd-a~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~ 69 (137)
+|-++|....-..+++++.+|. .-..+ .....+.|++.|+.+...-++++.+
T Consensus 9 ~~~~~~~~~~l~g~~vlvtr~~~~~~~~-~~~l~~~L~~~G~~~~~~P~i~i~~ 61 (286)
T 1jr2_A 9 HHHHSSGHIEGRHMKVLLLKDAKEDDCG-QDPYIRELGLYGLEATLIPVLSFEF 61 (286)
T ss_dssp -------------CEEEEEESSCCCBTT-BCHHHHHHHTTTCEEEEEECEEEEE
T ss_pred cccccccchhhcCCEEEEEcCCCCCCCC-CcHHHHHHHHCCCceEEEeeEEEec
Confidence 4455566666777899999996 42101 1567888999999998877776654
No 33
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=35.17 E-value=29 Score=23.54 Aligned_cols=32 Identities=22% Similarity=0.454 Sum_probs=25.3
Q ss_pred ecCHHHHHhHHHHhc------CCCcHHHHHHHhhcCCE
Q 032592 66 RLDEDGAKTFYAEHS------SRSFFSSLIKYMTSGPV 97 (137)
Q Consensus 66 ~ls~~~a~~~y~~~~------~~~~~~~lv~~~~sGpv 97 (137)
.++++++.+++.... |+-.|.++++.|.+||.
T Consensus 117 ~ls~~e~~~l~~~~D~~~d~dG~I~~~EF~~~m~~~p~ 154 (159)
T 3i5g_C 117 RITEDQCNDIFTFCDIREDIDGNIKYEDLMKKVMAGPF 154 (159)
T ss_dssp CCCHHHHHHHHHHTTCCCCSSCCEEHHHHHHHHHHCSC
T ss_pred CCCHHHHHHHHHHhCcCCCCCCeEeHHHHHHHHHCCCC
Confidence 478999999887542 35679999999999984
No 34
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=32.38 E-value=42 Score=24.07 Aligned_cols=61 Identities=8% Similarity=-0.040 Sum_probs=32.1
Q ss_pred CCcCCCCCcccceEEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHH
Q 032592 17 PCRSLSNGSVEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAE 78 (137)
Q Consensus 17 ~~~~~~~~~~~~e~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~ 78 (137)
+|-|+........-.+.+|.|.........+ +....+.|......+...++.+++.++...
T Consensus 4 ~~~~~~~~~~~~~~~l~~It~~~~~~~~l~~-~~~~~~~G~~~v~lr~~~~~~~~~~~~~~~ 64 (221)
T 1yad_A 4 HHHSSGLVPRGSHMELHAITDDSKPVEELAR-IIITIQNEVDFIHIRERSKSAADILKLLDL 64 (221)
T ss_dssp -------------CEEEEECCSCSCHHHHHH-HHHHHGGGCSEEEECCTTSCHHHHHHHHHH
T ss_pred cccccCCCCCccCccEEEEECCCcCcchHHH-HHHHHHCCCCEEEEccCCCCHHHHHHHHHH
Confidence 3444443333344567888887554322333 555667898988888777888876665443
No 35
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=26.57 E-value=39 Score=26.60 Aligned_cols=94 Identities=11% Similarity=0.170 Sum_probs=53.8
Q ss_pred eEEEEEEcCCccCCCchHHHHHHHHHcCCeEEEEE--EeecCH------HHHHhHHHHhcCCCcHHHHHHHhhcCCEEEE
Q 032592 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRER--VVRLDE------DGAKTFYAEHSSRSFFSSLIKYMTSGPVLAM 100 (137)
Q Consensus 29 e~tlvlIKPda~~~~~~g~II~~i~~~Gf~I~~~k--~~~ls~------~~a~~~y~~~~~~~~~~~lv~~~~sGpvv~l 100 (137)
...+++..|+.....-+...++.+.+.|..+.++= ++.... ..+...+... +.+.+++-+.+..=|++.+
T Consensus 232 t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~~~~~~~~~~~~~~r~~~q--~~~l~~i~~~~~~~~~~~~ 309 (348)
T 3io3_A 232 TTFICVCISEFLSLYETERMIQELMSYNMDVNSIVVNQLLFAEGDDHSCKRCESRWKMQ--KKYLDQMGELYEDYHLVKM 309 (348)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHTTCCCCEEEEEEECCCC-----CHHHHHHHHHH--HHHHHHHHHHTTTSEEEEE
T ss_pred eEEEEEecCCccHHHHHHHHHHHHHHCCCCccEEEEcCCccccccCccCHHHHHHHHHH--HHHHHHHHHHccCCCEEEe
Confidence 57889999997765456778889988887664431 222111 1222222221 2234444444432245544
Q ss_pred EE-----eeccHHHHH-HHHhCCCChhhhh
Q 032592 101 VL-----EKENAITDW-RALIGPTDAKKAK 124 (137)
Q Consensus 101 ~l-----~g~naV~~~-r~l~Gp~dp~~A~ 124 (137)
-+ .|.++++.+ +.+.||.||....
T Consensus 310 pl~~~e~~G~~~L~~~~~~l~~~~~p~~~~ 339 (348)
T 3io3_A 310 PLLGCEIRGVENLKKFSKFLLKPYDPKADS 339 (348)
T ss_dssp ECCSSCCCSHHHHHHHHHHHHSCCCTTTCG
T ss_pred cCCCCCCCCHHHHHHHHHHHcCCCCccccc
Confidence 43 555666666 6689999987643
No 36
>1jg5_A GTP cyclohydrolase I feedback regulatory protein; alpha/beta structure, beta sheet, protein binding; 2.60A {Rattus norvegicus} SCOP: d.205.1.1 PDB: 1is8_K* 1is7_K* 1wpl_K*
Probab=23.95 E-value=69 Score=20.35 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=17.6
Q ss_pred hHHHHHHHHHcCCeEEEEEEe
Q 032592 45 TDEIKKVILESGFSILRERVV 65 (137)
Q Consensus 45 ~g~II~~i~~~Gf~I~~~k~~ 65 (137)
-..++++|+..||+++.+.-+
T Consensus 52 Pr~VLnKLE~~G~rVvsmtGv 72 (83)
T 1jg5_A 52 PRIVLDKLECRGFRVLSMTGV 72 (83)
T ss_dssp HHHHHHHHHHTTCEEEEEEEE
T ss_pred hHHHHHHHhccCeEEEEEecC
Confidence 467999999999999987543
No 37
>1w5q_A Delta-aminolevulinic acid dehydratase; synthase, evolution, metalloenzyme, porphobilinogen synthase, protein engineering,; 1.4A {Pseudomonas aeruginosa} PDB: 1w5p_A* 1w5o_A 1w5n_A 1w56_A 1w5m_A 1w54_A 1gzg_A* 1b4k_A 2woq_A* 2c14_A* 2c16_A* 2c19_A* 2c15_A* 2c18_A* 2c13_A*
Probab=23.54 E-value=7.3 Score=31.30 Aligned_cols=46 Identities=15% Similarity=0.364 Sum_probs=33.3
Q ss_pred EEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcC
Q 032592 34 MIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSS 81 (137)
Q Consensus 34 lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~ 81 (137)
+|-|..+-.|+++.|-+.|.++||. ++..+.-+..-|..||+.+++
T Consensus 171 iVAPSdMMDGrV~aIR~aLd~~G~~--~v~ImsYsaKyASafYGPFRd 216 (337)
T 1w5q_A 171 VVAPSDMMDGRIGAIREALESAGHT--NVRVMAYSAKYASAYYGPFRD 216 (337)
T ss_dssp EEEECSCCTTHHHHHHHHHHHTTCT--TCEEEEEEEEBCCGGGHHHHH
T ss_pred eEecccccccHHHHHHHHHHHCCCC--CceeehhHHHHHHHHHHHHHH
Confidence 5667776678999999999999995 344444455556677777664
No 38
>1l6s_A Porphobilinogen synthase; dehydratase, lyase; HET: CME DSB; 1.70A {Escherichia coli} SCOP: c.1.10.3 PDB: 1i8j_A* 1l6y_A* 1b4e_A
Probab=22.58 E-value=5.8 Score=31.67 Aligned_cols=45 Identities=18% Similarity=0.375 Sum_probs=31.7
Q ss_pred EEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhc
Q 032592 34 MIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHS 80 (137)
Q Consensus 34 lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~ 80 (137)
+|-|..+-.|+++.|-+.|.++||. ++..+.-+..-|..||+.++
T Consensus 160 iVAPSdMMDGrV~aIR~aLd~~G~~--~v~ImsYsaKyASafYGPFR 204 (323)
T 1l6s_A 160 FIAPSAAMDGQVQAIRQALDAAGFK--DTAIMSYSTKFASSFYGPFR 204 (323)
T ss_dssp EEEECSCCTTHHHHHHHHHHHTTCT--TCEEBCCCEEBCCSCCHHHH
T ss_pred eEecccccccHHHHHHHHHHhCCCC--CceeeehhHHHhHHhhHHHH
Confidence 5677777779999999999999994 34444445445555666554
No 39
>1w1z_A Delta-aminolevulinic acid dehydratase; synthase, tetrapyrrole biosynthesis, ALAD, porphyrin biosynt heme biosynthesis, lyase; 2.6A {Prosthecochloris vibrioformis} SCOP: c.1.10.3 PDB: 2c1h_A*
Probab=20.51 E-value=6.8 Score=31.37 Aligned_cols=46 Identities=15% Similarity=0.316 Sum_probs=33.5
Q ss_pred EEcCCccCCCchHHHHHHHHHcCCeEEEEEEeecCHHHHHhHHHHhcC
Q 032592 34 MIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSS 81 (137)
Q Consensus 34 lIKPda~~~~~~g~II~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~ 81 (137)
+|-|..+-.|+++.|-+.|.++||. ++..+.-+..-|..||+.+++
T Consensus 166 iVAPSdMMDGrV~aIR~aLd~~G~~--~v~ImsYsaKyASafYGPFRd 211 (328)
T 1w1z_A 166 FVSPSDMMDGRIGAIREALDETDHS--DVGILSYAAKYASSFYGPFRD 211 (328)
T ss_dssp EEEECSCCTTHHHHHHHHHHHTTCT--TSEEEEEEEEBCCTTCHHHHH
T ss_pred eEecccccccHHHHHHHHHHhCCCC--CceeeehhHHHhhhccchHHH
Confidence 5667776678999999999999994 344444455556677777664
Done!