RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 032592
(137 letters)
>gnl|CDD|215503 PLN02931, PLN02931, nucleoside diphosphate kinase family protein.
Length = 177
Score = 224 bits (572), Expect = 2e-76
Identities = 89/122 (72%), Positives = 104/122 (85%)
Query: 8 LFILACISSPCRSLSNGSVEKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRL 67
LF+L S P R S+G+ E+E+TLAMIKPDGLSGNYT+ IK+VILESGFSI++E +L
Sbjct: 9 LFLLLLASFPIRCSSSGASEEERTLAMIKPDGLSGNYTERIKEVILESGFSIVKEMTTQL 68
Query: 68 DEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISH 127
DED A FYAEHSSRSFF SL+KYMTSGPVL MVLEKENA++DWR LIGPTDA+KAKISH
Sbjct: 69 DEDRASLFYAEHSSRSFFPSLVKYMTSGPVLVMVLEKENAVSDWRTLIGPTDARKAKISH 128
Query: 128 PH 129
P+
Sbjct: 129 PN 130
>gnl|CDD|239880 cd04418, NDPk5, Nucleoside diphosphate kinase homolog 5 (NDP kinase
homolog 5, NDPk5, NM23-H5; Inhibitor of p53-induced
apoptosis-beta, IPIA-beta): In human, mRNA for NDPk5 is
almost exclusively found in testis, especially in the
flagella of spermatids and spermatozoa, in association
with axoneme microtubules, and may play a role in
spermatogenesis by increasing the ability of late-stage
spermatids to eliminate reactive oxygen species. It
belongs to the nm23 Group II genes and appears to differ
from the other human NDPks in that it lacks two
important catalytic site residues, and thus does not
appear to possess NDP kinase activity. NDPk5 confers
protection from cell death by Bax and alters the
cellular levels of several antioxidant enzymes,
including glutathione peroxidase 5 (Gpx5).
Length = 132
Score = 147 bits (372), Expect = 1e-46
Identities = 50/103 (48%), Positives = 75/103 (72%), Gaps = 2/103 (1%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+TLA+IKPD + +EI+ +ILESGF+I+++R ++L + FYAEH + FF L
Sbjct: 1 ERTLAIIKPDAVH--KAEEIEDIILESGFTIVQKRKLQLSPEQCSDFYAEHYGKMFFPHL 58
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHRL 131
+ YM+SGP++AMVL + NAI+ W+ L+GPT++ KAK +HP L
Sbjct: 59 VAYMSSGPIVAMVLARHNAISYWKELLGPTNSLKAKETHPDSL 101
>gnl|CDD|197791 smart00562, NDK, Enzymes that catalyze nonsubstrate specific
conversions of nucleoside diphosphates to nucleoside
triphosphates. These enzymes play important roles in
bacterial growth, signal transduction and pathogenicity.
Length = 135
Score = 140 bits (355), Expect = 5e-44
Identities = 45/95 (47%), Positives = 66/95 (69%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+TLA+IKPD + EI GF I+ ++++L E+ A+ FYAEH + FF+ L
Sbjct: 1 ERTLAIIKPDAVQRGLIGEIISRFERKGFKIVAMKMLQLTEEQAEEFYAEHEGKPFFNDL 60
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKA 123
+++MTSGPV+AMVLE E+A+ WR L+GPTD ++A
Sbjct: 61 VEFMTSGPVVAMVLEGEDAVKTWRTLMGPTDPREA 95
>gnl|CDD|201162 pfam00334, NDK, Nucleoside diphosphate kinase.
Length = 135
Score = 132 bits (334), Expect = 8e-41
Identities = 40/95 (42%), Positives = 61/95 (64%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+TL +IKPD + EI + GF I+ ++++L + A+ YAEH + FF L
Sbjct: 1 ERTLVIIKPDAVQRGLIGEIISRFEKKGFKIVALKMLQLTREQAEEHYAEHKGKPFFPGL 60
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKA 123
+++MTSGPV+AMVLE ENA++ R L+G T+ +A
Sbjct: 61 VEFMTSGPVVAMVLEGENAVSVVRELMGATNPAEA 95
>gnl|CDD|179085 PRK00668, ndk, mulitfunctional nucleoside diphosphate
kinase/apyrimidinic endonuclease/3'-; Validated.
Length = 134
Score = 125 bits (318), Expect = 2e-38
Identities = 38/95 (40%), Positives = 58/95 (61%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+T ++IKPD + EI + G I+ ++++L + A+ YAEH + FF L
Sbjct: 2 ERTFSIIKPDAVQRGLIGEIISRFEKKGLKIVALKMMQLSRELAEGHYAEHKEKPFFGEL 61
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKA 123
+++MTSGPV+ MVLE ENAI R L+G T+ +A
Sbjct: 62 VEFMTSGPVVVMVLEGENAIAKVRELMGATNPAEA 96
>gnl|CDD|239876 cd04413, NDPk_I, Nucleoside diphosphate kinase Group I
(NDPk_I)-like: NDP kinase domains are present in a large
family of structurally and functionally conserved
proteins from bacteria to humans that generally catalyze
the transfer of gamma-phosphates of a nucleoside
triphosphate (NTP) donor onto a nucleoside diphosphate
(NDP) acceptor through a phosphohistidine intermediate.
The mammalian nm23/NDP kinase gene family can be divided
into two distinct groups. The group I genes encode
proteins that generally have highly homologous
counterparts in other organisms and possess the classic
enzymatic activity of a kinase. This group includes
vertebrate NDP kinases A-D (Nm23- H1 to -H4), and its
counterparts in bacteria, archea and other eukaryotes.
NDP kinases exist in two different quaternary
structures; all known eukaryotic enzymes are hexamers,
while some bacterial enzymes are tetramers, as in
Myxococcus. They possess the NDP kinase active site
motif (NXXH[G/A]SD) and the nine residues that are most
essential for catalysis.
Length = 130
Score = 124 bits (314), Expect = 8e-38
Identities = 41/96 (42%), Positives = 59/96 (61%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+TL +IKPDG+ EI G I+ ++++L E+ A+ YAEH + FF L
Sbjct: 1 ERTLVIIKPDGVQRGLIGEIISRFERKGLKIVALKMLQLTEELAEEHYAEHKGKPFFPEL 60
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAK 124
+++MTSGPV+AMVLE ENA+ R L+G T+ A
Sbjct: 61 VEFMTSGPVVAMVLEGENAVKTVRKLMGATNPADAA 96
>gnl|CDD|238335 cd00595, NDPk, Nucleoside diphosphate kinases (NDP kinases, NDPks):
NDP kinases, responsible for the synthesis of nucleoside
triphosphates (NTPs), are involved in numerous
regulatory processes associated with proliferation,
development, and differentiation. They are vital for
DNA/RNA synthesis, cell division, macromolecular
metabolism and growth. The enzymes generate NTPs or
their deoxy derivatives by terminal (gamma)
phosphotransfer from an NTP such as ATP or GTP to any
nucleoside diphosphate (NDP) or its deoxy derivative.
The sequence of NDPk has been highly conserved through
evolution. There is a single histidine residue conserved
in all known NDK isozymes, which is involved in the
catalytic mechanism. The first confirmed metastasis
suppressor gene was the NDP kinase protein encoded by
the nm23 gene. Unicellular organisms generally possess
only one gene encoding NDP kinase, while most
multicellular organisms possess not only an ortholog
that provides most of the NDP kinase enzymatic activity
but also multiple divergent paralogous genes. The human
genome codes for at least nine NDP kinases and can be
classified into two groups, Groups I and II, according
to their genomic architecture and distinct enzymatic
activity. Group I isoforms (A-D) are well-conserved,
catalytically active, and share 58-88% identity between
each other, while Group II are more divergent, with only
NDPk6 shown to be active. NDP kinases exist in two
different quaternary structures; all known eukaryotic
enzymes are hexamers, while some bacterial enzymes are
tetramers, as in Myxococcus. The hexamer can be viewed
as trimer of dimers, while tetramers are dimers of
dimers, with the dimerization interface conserved.
Length = 133
Score = 122 bits (309), Expect = 4e-37
Identities = 44/100 (44%), Positives = 69/100 (69%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+TLA+IKPD ++ EI I ++GF I+ + + L E+ A+ FY EH R FF L
Sbjct: 1 ERTLALIKPDAVAEGLLGEIIMRIEDAGFEIVAMKELHLTEEQAEEFYVEHKGRPFFPDL 60
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHP 128
+++M+SGPV+AM+LEK+NA+ +WR ++GPT+ + A+ P
Sbjct: 61 VQFMSSGPVVAMILEKDNAVGEWREMLGPTNPEIARHLAP 100
>gnl|CDD|239879 cd04416, NDPk_TX, NDP kinase domain of thioredoxin
domain-containing proteins (TXNDC3 and TXNDC6): Txl-2
(TXNDC6) and Sptrx-2 (TXNDC3) are fusion proteins of
Group II N-terminal thioredoxin domains followed by one
or three NDP kinase domains, respectively. Sptrx-2,
which has a tissue specific distribution in human
testis, has been considered as a member of the nm23
family (nm23-H8) and exhibits a high homology with sea
urchin IC1 (intermediate chain-1) protein, a component
of the sperm axonemal outer dynein arm complex. Txl-2 is
mainly represented in close association with
microtubules within tissues with cilia and flagella such
as seminiferous epithelium (spermatids) and lung airway
epithelium, suggesting possible role in control of
microtubule stability and maintenance.
Length = 132
Score = 116 bits (293), Expect = 1e-34
Identities = 49/103 (47%), Positives = 69/103 (66%), Gaps = 1/103 (0%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E TLA+IKPD ++ DEI + I E+GF IL ++ + L E+ A+ FY EH +F L
Sbjct: 1 EYTLALIKPDAVA-EKKDEILEKIKEAGFEILAQKEMVLTEEQAREFYKEHEEEDYFEDL 59
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHRL 131
+++MTSGP L +VL KENA+ +WR L+GPTD ++AK P L
Sbjct: 60 VEFMTSGPSLILVLSKENAVEEWRELMGPTDPEEAKEEKPDSL 102
>gnl|CDD|223183 COG0105, Ndk, Nucleoside diphosphate kinase [Nucleotide transport
and metabolism].
Length = 135
Score = 112 bits (283), Expect = 5e-33
Identities = 40/95 (42%), Positives = 60/95 (63%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+TL++IKPD + EI + G I+ ++V+L + A+ YAEH + FF L
Sbjct: 3 ERTLSIIKPDAVKRGLIGEIISRFEKKGLKIVALKMVQLSRELAENHYAEHKGKPFFGEL 62
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKA 123
++++TSGPV+AMVLE ENAI+ R L+G T+ A
Sbjct: 63 VEFITSGPVVAMVLEGENAISVVRKLMGATNPANA 97
>gnl|CDD|239877 cd04414, NDPk6, Nucleoside diphosphate kinase 6 (NDP kinase 6,
NDPk6, NM23-H6; NME6; Inhibitor of p53-induced
apoptosis-alpha, IPIA-alpha): The nm23-H6 gene encoding
NDPk6 is expressed mainly in mitochondria, but also
found at a lower level in most tissues. NDPk6 has all
nine residues considered crucial for enzyme structure
and activity, and has been found to have NDP kinase
activity. It may play a role in cell growth and cell
cycle progression. The nm23-H6 gene locus has been
implicated in a variety of malignant tumors.
Length = 135
Score = 108 bits (271), Expect = 3e-31
Identities = 43/101 (42%), Positives = 69/101 (68%), Gaps = 1/101 (0%)
Query: 29 EKTLAMIKPDGLSGNYT-DEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSS 87
+ TLA+IKPD ++ + ++++IL +GF+I+R++ +R + A+ FYAEH + F+
Sbjct: 1 QLTLALIKPDAVAHPLALEAVRQLILSNGFTIVRKKELRWTTEDAERFYAEHKGKFFYDR 60
Query: 88 LIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHP 128
L+ +MTSGP A++L ENAI WRAL+GPT +A+ S P
Sbjct: 61 LVSFMTSGPSWALILAHENAIKTWRALMGPTKVFRARASAP 101
>gnl|CDD|239878 cd04415, NDPk7A, Nucleoside diphosphate kinase 7 domain A (NDPk7A):
The nm23-H7 class of nucleoside diphosphate kinase
(NDPk7) consists of an N-terminal DM10 domain and two
functional catalytic NDPk modules, NDPk7A and NDPk7B.
The function of the DM10 domain, which also occurs in
multiple copies in other proteins, is unknown. NDPk7 is
predominantly expressed in testes, although appreciable
amount are also found in liver, heart, brain, ovary,
small intestine and spleen. The nm23-H7 gene is located
in or near the hereditary prostrate cancer
susceptibility locus. Nm23-H7 may be involved in the
development of colon and gastric carcinoma, the latter
possibly in a type-specific manner.
Length = 131
Score = 103 bits (258), Expect = 2e-29
Identities = 46/109 (42%), Positives = 76/109 (69%), Gaps = 3/109 (2%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
EKTLA+IKPD S +I ++I ++GF+I + ++ +L A+ FYAEH S+ F++ L
Sbjct: 1 EKTLALIKPDAYS--KIGKIIQIIEDAGFTITKAKMTKLSRKEAQDFYAEHQSKPFYNEL 58
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHRLYVLPFG 137
+++MTSGP++AM L ++AI++WR L+GPT++ A+ P+ + L FG
Sbjct: 59 VQFMTSGPIVAMELVGDDAISEWRKLLGPTNSSVARSDAPNSIRAL-FG 106
>gnl|CDD|173008 PRK14542, PRK14542, nucleoside diphosphate kinase; Provisional.
Length = 137
Score = 96.3 bits (239), Expect = 2e-26
Identities = 43/104 (41%), Positives = 63/104 (60%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
+T MIKPDG+ + I + I + GF IL + ++L + AK FY HS+R F++ L
Sbjct: 2 SRTFIMIKPDGVKNKHVGNILQRIEKEGFKILGLKYLKLSLEDAKQFYKVHSARPFYNDL 61
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHRLY 132
YM+SGP++A LE++NA+ WR +IG TD K+A LY
Sbjct: 62 CNYMSSGPIVAAALERDNAVLHWREVIGATDPKEAAAGTIRALY 105
>gnl|CDD|184734 PRK14545, PRK14545, nucleoside diphosphate kinase; Provisional.
Length = 139
Score = 95.0 bits (236), Expect = 5e-26
Identities = 40/108 (37%), Positives = 63/108 (58%)
Query: 30 KTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSLI 89
+T MIKPD + + I +I +GF I+ ++ +L A+TFYA H+ R F+ L+
Sbjct: 5 RTFTMIKPDAVENGHIGGILDMITAAGFRIVAMKLTQLTVADAETFYAVHAERPFYGELV 64
Query: 90 KYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHRLYVLPFG 137
++M+ GP++A +LEKENA+ D+R LIG T+ A + Y G
Sbjct: 65 EFMSRGPIVAAILEKENAVEDFRTLIGATNPADAAEGTIRKKYAKSIG 112
>gnl|CDD|173007 PRK14541, PRK14541, nucleoside diphosphate kinase; Provisional.
Length = 140
Score = 87.7 bits (217), Expect = 3e-23
Identities = 40/104 (38%), Positives = 62/104 (59%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSSL 88
E+TL ++KPD + + I +GF ++ + RL ++ A FYA H R F+ L
Sbjct: 2 ERTLTILKPDCVRKQLIGAVIDKIERAGFRVVAMKKTRLTKETAGEFYAVHRERPFYGEL 61
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHRLY 132
+++M+SGP + M+LEKENA+ D+R LIG TD +A +LY
Sbjct: 62 VEFMSSGPCVPMILEKENAVADFRTLIGATDPAEAAEGTVRKLY 105
>gnl|CDD|184733 PRK14540, PRK14540, nucleoside diphosphate kinase; Provisional.
Length = 134
Score = 80.3 bits (198), Expect = 2e-20
Identities = 36/97 (37%), Positives = 59/97 (60%)
Query: 27 EKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFS 86
EKE+T +KPD + +I + GF I+ ++++L + A+ +Y EH + F+
Sbjct: 1 EKERTFVALKPDAVERKLIGKIIQRFENKGFEIVEMKMLKLTREMAEEYYEEHKGKEFYE 60
Query: 87 SLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKA 123
LI +MTSG ++AMV+E ENAI+ R +IG T+ +A
Sbjct: 61 RLINFMTSGRIVAMVIEGENAISTVRKMIGKTNPAEA 97
>gnl|CDD|173387 PTZ00093, PTZ00093, nucleoside diphosphate kinase, cytosolic;
Provisional.
Length = 149
Score = 77.1 bits (190), Expect = 5e-19
Identities = 32/91 (35%), Positives = 53/91 (58%)
Query: 28 KEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSS 87
E+T M+KPDG+ EI K + G+ ++ ++++ + A+ Y EH + FF
Sbjct: 2 SERTFIMVKPDGVQRGLVGEIIKRFEKKGYKLVALKMLQPTPEIAEEHYKEHKGKPFFPG 61
Query: 88 LIKYMTSGPVLAMVLEKENAITDWRALIGPT 118
L+KY++SGPV+ MV E +N + R L+G T
Sbjct: 62 LVKYISSGPVVCMVWEGKNVVKQGRKLLGAT 92
>gnl|CDD|239875 cd04412, NDPk7B, Nucleoside diphosphate kinase 7 domain B (NDPk7B):
The nm23-H7 class of nucleoside diphosphate kinase
(NDPk7) consists of an N-terminal DM10 domain and two
functional catalytic NDPk modules, NDPk7A and NDPk7B.
The function of the DM10 domain, which also occurs in
multiple copies in other proteins, is unknown. NDPk7 is
predominantly expressed in testes, although appreciable
amount are also found in liver, heart, brain, ovary,
small intestine and spleen. The nm23-H7 gene is located
in or near the hereditary prostrate cancer
susceptibility locus. Nm23-H7 may be involved in the
development of colon and gastric carcinoma, the latter
possibly in a type-specific manner.
Length = 134
Score = 69.2 bits (170), Expect = 4e-16
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Query: 31 TLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEH--SSRSFFSSL 88
T+ +IKP +S EI + IL+ GF I ++ L A+ F E ++
Sbjct: 3 TVCIIKPHAVSHGLLGEILQQILDEGFEITALQMFNLTRANAEEFL-EVYKGVVPELPAM 61
Query: 89 IKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAKISHPHRL 131
+ +TSGP +A+ + ENA+ +R GP D + AK P+ L
Sbjct: 62 VDELTSGPCIALEIAGENAVKTFREFCGPFDPEIAKQLRPNTL 104
>gnl|CDD|178228 PLN02619, PLN02619, nucleoside-diphosphate kinase.
Length = 238
Score = 66.4 bits (162), Expect = 3e-14
Identities = 37/98 (37%), Positives = 54/98 (55%)
Query: 27 EKEKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFS 86
E E+T IKPDG+ EI GF ++ +VV ++ A+ Y + R FF+
Sbjct: 87 EMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKVVVPSKEFAQKHYHDLKERPFFN 146
Query: 87 SLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKAK 124
L +++SGPV+AMV E E I R LIG TD +K++
Sbjct: 147 GLCDFLSSGPVVAMVWEGEGVIKYGRKLIGATDPQKSE 184
>gnl|CDD|173010 PRK14544, PRK14544, nucleoside diphosphate kinase; Provisional.
Length = 183
Score = 57.9 bits (140), Expect = 2e-11
Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 37/130 (28%)
Query: 29 EKTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEHSSRSFFSS- 87
E+TL ++KPD + EI ++G I+ ++V+ + + FY SS ++ S
Sbjct: 4 ERTLVILKPDAVKRGLVGEIISRFEKAGLKIVAMKMVKATPEQIERFYP--SSEEWYRSV 61
Query: 88 ----------------------------------LIKYMTSGPVLAMVLEKENAITDWRA 113
L+KYMTSGP++AMVL+ A+ R
Sbjct: 62 GNKLLKAYQELGIDPRARLGTDDPVEVGKKVKESLVKYMTSGPIVAMVLKGNRAVEVVRK 121
Query: 114 LIGPTDAKKA 123
L+GPT KA
Sbjct: 122 LVGPTSPHKA 131
>gnl|CDD|237749 PRK14543, PRK14543, nucleoside diphosphate kinase; Provisional.
Length = 169
Score = 49.9 bits (119), Expect = 2e-08
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 13/104 (12%)
Query: 29 EKTLAMIKPDG----LSGNYTDEIKKVILESGFSILRERVVRLDEDGAKTFY-----AEH 79
+KTL +IKPDG L GN ++V G I+ +++ +D A+ Y A
Sbjct: 6 QKTLCIIKPDGVRRGLIGNVVSRFERV----GLKIVAAKMLLVDRSMAEKHYLYDDIAVR 61
Query: 80 SSRSFFSSLIKYMTSGPVLAMVLEKENAITDWRALIGPTDAKKA 123
+ + SLIK+++S PV V+E ++ R G T+ K A
Sbjct: 62 HGEAVWKSLIKFISSSPVFVFVVEGVESVEVVRKFCGSTEPKLA 105
>gnl|CDD|234953 PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.
Length = 476
Score = 31.2 bits (72), Expect = 0.15
Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 14/113 (12%)
Query: 32 LAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRLDE--DGAKTFYAEHSSRSFFSSLI 89
++ P L D LE +L+ER L E + A+ F+ + +
Sbjct: 334 AELLLPWHLEQEGLDTEDGPYLEKVVPLLKERAKTLKELAELARFFFEDFPE-YDEDAAK 392
Query: 90 KYMTSG--PVLAMVLEKENAITDW---------RALIGPTDAKKAKISHPHRL 131
K++ VL +LEK A+ +W +A+ K K+ P R+
Sbjct: 393 KHLKEVAREVLEALLEKLEALEEWTAEAIEAAIKAVAEELGLKGGKLFMPLRV 445
>gnl|CDD|240293 PTZ00149, PTZ00149, hypoxanthine phosphoribosyltransferase;
Provisional.
Length = 241
Score = 30.5 bits (69), Expect = 0.24
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 10/57 (17%)
Query: 44 YTDEIKKVILESGFSILRERVVRLDEDGAKTFYAEH--------SSRSFFSSLIKYM 92
Y + + K++L +G ++++RV +L D + + E SR FFS+L+ Y+
Sbjct: 49 YKNYLTKILLPNG--LIKDRVEKLAYDIKQVYGNEELHILCILKGSRGFFSALVDYL 103
>gnl|CDD|180505 PRK06278, PRK06278, cobyrinic acid a,c-diamide synthase;
Validated.
Length = 476
Score = 27.7 bits (62), Expect = 2.2
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 12/55 (21%)
Query: 22 SNGSVEKEKTLAMIKPDGL---SGNYTDEIKKVILE---------SGFSILRERV 64
N E + +I P G SG+ TDE+KK IL SGF IL E++
Sbjct: 28 ENNIKEIKDLDGLIIPGGSLVESGSLTDELKKEILNFDGYIIGICSGFQILSEKI 82
>gnl|CDD|107179 PHA02414, PHA02414, hypothetical protein.
Length = 111
Score = 26.8 bits (59), Expect = 2.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 42 GNYTDEIKKVILESGFSILRERVVRLDEDGA 72
G TD+ LE + LR+ VV LD+D A
Sbjct: 23 GELTDKGDNKELEVAVAELRDIVVSLDKDVA 53
>gnl|CDD|129591 TIGR00500, met_pdase_I, methionine aminopeptidase, type I.
Methionine aminopeptidase is a cobalt-binding enzyme.
Bacterial and organellar examples (type I) differ from
eukaroytic and archaeal (type II) examples in lacking a
region of approximately 60 amino acids between the 4th
and 5th cobalt-binding ligands. This model describes
type I. The role of this protein in general is to
produce the mature form of cytosolic proteins by
removing the N-terminal methionine [Protein fate,
Protein modification and repair].
Length = 247
Score = 27.3 bits (61), Expect = 2.4
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 30 KTLAMIKPDGLSGNYTDEIKKVILESGFSILRE 62
K + KP G I+K GFS++RE
Sbjct: 131 KAIEEAKPGNRIGEIGAAIQKYAEAKGFSVVRE 163
>gnl|CDD|218399 pfam05046, Img2, Mitochondrial large subunit ribosomal protein
(Img2). This family of proteins have been identified
as part of the mitochondrial large ribosomal subunit in
yeast.
Length = 85
Score = 26.4 bits (59), Expect = 2.5
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 42 GNYTDEIKKVILESGF 57
G++ +EIKK +L GF
Sbjct: 70 GDHVEEIKKFLLSKGF 85
>gnl|CDD|107384 cd06389, PBP1_iGluR_AMPA_GluR2, N-terminal
leucine/isoleucine/valine-binding protein (LIVBP)-like
domain of the GluR2 subunit of the AMPA receptor.
N-terminal leucine/isoleucine/valine-binding protein
(LIVBP)-like domain of the GluR2 subunit of the AMPA
(alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic
acid) receptor. The AMPA receptor is a member of the
glutamate-receptor ion channels (iGluRs) which are the
major mediators of excitatory synaptic transmission in
the central nervous system. AMPA receptors are composed
of four types of subunits (GluR1, GluR2, GluR3, and
GluR4) which combine to form a tetramer and play an
important role in mediating the rapid excitatory
synaptic current. Furthermore, this N-terminal domain of
the iGluRs has homology with LIVBP, a bacterial
periplasmic binding protein, as well as with the
structurally related glutamate-binding domain of the
G-protein-coupled metabotropic receptors (mGluRs).
Length = 370
Score = 26.9 bits (59), Expect = 4.3
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 13 CISSPCRSLSNGSVEKEKTLAMIKPDGLSGN 43
C+++P G VE E+ L ++ +GL+GN
Sbjct: 303 CLANPAVPWGQG-VEIERALKQVQVEGLTGN 332
>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional.
Length = 371
Score = 26.6 bits (60), Expect = 4.8
Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Query: 14 ISSPCRSLS-NGSVEKEKTL 32
I PC+ G VEKEKTL
Sbjct: 194 IKDPCKKCHGQGRVEKEKTL 213
>gnl|CDD|234061 TIGR02923, AhaC, ATP synthase A1, C subunit. The A1/A0 ATP
synthase is homologous to the V-type (V1/V0, vacuolar)
ATPase, but functions in the ATP synthetic direction as
does the F1/F0 ATPase of bacteria. The C subunit is part
of the hydrophilic A1 "stalk" complex (AhaABCDEFG) which
is the site of ATP generation and is coupled to the
membrane-embedded proton translocating A0 complex.
Length = 343
Score = 25.9 bits (57), Expect = 7.4
Identities = 32/118 (27%), Positives = 44/118 (37%), Gaps = 35/118 (29%)
Query: 30 KTLAMIKPDGLSGNYTDEIKKVILESGFSILRERVVRL----DEDGA-----KTFYAEHS 80
KTL +K GLS DEI + G+ + E++ L D T Y E
Sbjct: 212 KTLLRLKAAGLS---PDEIMPYTIPGGYELDEEKLAPLAHIESIDEVVSALDGTKYGEDI 268
Query: 81 S--------------RSFFSSLIKYMTS---------GPVLAMVLEKENAITDWRALI 115
S R+ LIK T GPVL +L+KE + + RA+
Sbjct: 269 SEVLSEEEKSVAVFERALDEYLIKMATKLSLRYPLSVGPVLGYILKKEREVRNLRAIA 326
>gnl|CDD|153095 cd04706, PLA2_plant, PLA2_plant: Plant-specific sub-family of
Phospholipase A2, a super-family of secretory and
cytosolic enzymes; the latter are either Ca dependent or
Ca independent. Enzymatically active PLA2 cleaves the
sn-2 position of the glycerol backbone of phospholipids;
secreted PLA2s have also been found to specifically bind
to a variety of soluble and membrane proteins in
mammals, including receptors. As a toxin, PLA2 is a
potent presynaptic neurotoxin which blocks nerve
terminals by binding to the nerve membrane and
hydrolyzing stable membrane lipids. The products of the
hydrolysis cannot form bilayers leading to a change in
membrane conformation and ultimately to a block in the
release of neurotransmitters. PLA2 may form dimers or
oligomers. This sub-family does not appear to have a
conserved active site and metal-binding loop.
Length = 117
Score = 25.1 bits (55), Expect = 10.0
Identities = 9/41 (21%), Positives = 15/41 (36%)
Query: 64 VVRLDEDGAKTFYAEHSSRSFFSSLIKYMTSGPVLAMVLEK 104
V R + TF +F +I + ++A L K
Sbjct: 75 VRRFRKARKPTFEGNKCIVTFVIPVITVVMDAALIASKLGK 115
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.391
Gapped
Lambda K H
0.267 0.0806 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,070,302
Number of extensions: 636122
Number of successful extensions: 551
Number of sequences better than 10.0: 1
Number of HSP's gapped: 544
Number of HSP's successfully gapped: 38
Length of query: 137
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 50
Effective length of database: 7,078,804
Effective search space: 353940200
Effective search space used: 353940200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.4 bits)