BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032595
(137 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|F4IZC4|BASS4_ARATH Probable sodium/metabolite cotransporter BASS4, chloroplastic
OS=Arabidopsis thaliana GN=BASS4 PE=3 SV=1
Length = 436
Score = 168 bits (426), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 104/127 (81%), Gaps = 3/127 (2%)
Query: 6 VPWMQVSRSRSLLLMVKPQVFLVAIWMGTLLHLILLAFNAFSVWSLSVISGDCQSVFAKK 65
VPW+QVSRSRSLLL V+P+VFL A+ +G LLHL LLAFNA S+ LS ++G +S K
Sbjct: 309 VPWIQVSRSRSLLLSVQPKVFLAAVGIGILLHLSLLAFNAVSIRILSGLTGGSKS---SK 365
Query: 66 ENTNAVVLVASQKTLPVLVAVVEQLGCAFGESGLLVLPCVAAHLTQIIMDSFLVNFWLRR 125
EN+ AV+LV+SQKTLPV+VAVVEQLG AFGE+GLLVLPCVAAHL QI++DS LVN WLRR
Sbjct: 366 ENSTAVLLVSSQKTLPVMVAVVEQLGGAFGETGLLVLPCVAAHLNQIMIDSVLVNLWLRR 425
Query: 126 DKDLSSN 132
KD S+
Sbjct: 426 GKDTSTK 432
>sp|Q6ESG1|BASS4_ORYSJ Probable sodium/metabolite cotransporter BASS4, chloroplastic
OS=Oryza sativa subsp. japonica GN=BASS4 PE=3 SV=1
Length = 423
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/130 (63%), Positives = 101/130 (77%), Gaps = 2/130 (1%)
Query: 6 VPWMQVSRSRSLLLMVKPQVFLVAIWMGTLLHLILLAFNAFSVWSLSVISGDCQSVFAKK 65
VPW+QVSRSRSLLL V+P+ F VA+ +G LLH LLAFNA ++ LS + SVFA+
Sbjct: 296 VPWIQVSRSRSLLLSVQPKAFAVAVTVGVLLHFALLAFNAAALHILSRLEQRGVSVFARN 355
Query: 66 ENTNAVVLVASQKTLPVLVAVVEQLGCAFGESGLLVLPCVAAHLTQIIMDSFLVNFWLRR 125
E AV+LVASQKTLPVLVAVVEQLG A GESGLLV+PCVAAH+ QII+DS +VN+W +R
Sbjct: 356 EYARAVILVASQKTLPVLVAVVEQLGGALGESGLLVIPCVAAHINQIIIDSIIVNWWRQR 415
Query: 126 DKDLSSNNAK 135
D+ + NAK
Sbjct: 416 DQQFA--NAK 423
>sp|B8AJ09|BASS4_ORYSI Probable sodium/metabolite cotransporter BASS4, chloroplastic
OS=Oryza sativa subsp. indica GN=BASS4 PE=3 SV=1
Length = 423
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/130 (63%), Positives = 101/130 (77%), Gaps = 2/130 (1%)
Query: 6 VPWMQVSRSRSLLLMVKPQVFLVAIWMGTLLHLILLAFNAFSVWSLSVISGDCQSVFAKK 65
VPW+QVSRSRSLLL V+P+ F VA+ +G LLH LLAFNA ++ LS + SVFA+
Sbjct: 296 VPWIQVSRSRSLLLSVQPKAFAVAVTVGVLLHFALLAFNAAALHILSRLEQRGVSVFARN 355
Query: 66 ENTNAVVLVASQKTLPVLVAVVEQLGCAFGESGLLVLPCVAAHLTQIIMDSFLVNFWLRR 125
E AV+LVASQKTLPVLVAVVEQLG A GESGLLV+PCVAAH+ QII+DS +VN+W +R
Sbjct: 356 EYARAVILVASQKTLPVLVAVVEQLGGALGESGLLVIPCVAAHINQIIIDSIIVNWWRQR 415
Query: 126 DKDLSSNNAK 135
D+ + NAK
Sbjct: 416 DQQFA--NAK 423
>sp|Q2FQH4|PELO_METHJ Protein pelota homolog OS=Methanospirillum hungatei (strain JF-1 /
DSM 864) GN=pelA PE=3 SV=1
Length = 341
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 42 AFNAFSVWSLSVISGDCQSVFAKKENTNAVVLVASQKTLPVLVA 85
++ VWSL+ SG V +++E + AVV SQ T P+++A
Sbjct: 150 SYGPKQVWSLAAGSGKTAEVSSREEFSEAVVSQVSQLTGPLVIA 193
>sp|Q87XP3|QUIP_PSESM Acyl-homoserine lactone acylase QuiP OS=Pseudomonas syringae pv.
tomato (strain DC3000) GN=quiP PE=3 SV=1
Length = 824
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 36 LHLILLAFNAFSVWSLSVISGDCQSVFAK--KENTNAVVLVASQKTLP 81
L L+L FN WS+S + GD Q +F + K N V +A K +P
Sbjct: 314 LPLVLSGFNGKLAWSMSNVKGDNQDLFLEKIKREGNRVSYMADGKWVP 361
>sp|Q48LS4|QUIP_PSE14 Acyl-homoserine lactone acylase QuiP OS=Pseudomonas syringae pv.
phaseolicola (strain 1448A / Race 6) GN=quiP PE=3 SV=1
Length = 824
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 36 LHLILLAFNAFSVWSLSVISGDCQSVFAK--KENTNAVVLVASQKTLP 81
L L+L FN WS+S + GD Q +F + K N + +A K +P
Sbjct: 314 LPLVLSGFNGKLAWSMSNVKGDNQDLFLEKIKREGNRISYMADGKWVP 361
>sp|Q4KH86|QUIP_PSEF5 Acyl-homoserine lactone acylase QuiP OS=Pseudomonas fluorescens
(strain Pf-5 / ATCC BAA-477) GN=quiP PE=3 SV=1
Length = 809
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 36 LHLILLAFNAFSVWSLSVISGDCQSVFAK--KENTNAVVLVASQKTLPVLV 84
L IL FN WS+S + GD Q +F + K NA+ + K PV V
Sbjct: 306 LPAILQGFNGKVAWSMSSVEGDNQDLFLEKLKRQGNALYYQNNGKWQPVTV 356
>sp|Q4ZPM1|QUIP_PSEU2 Acyl-homoserine lactone acylase QuiP OS=Pseudomonas syringae pv.
syringae (strain B728a) GN=quiP PE=3 SV=1
Length = 824
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 38 LILLAFNAFSVWSLSVISGDCQSVFAK--KENTNAVVLVASQKTLP 81
L+L FN WS+S + GD Q +F + K N V + K LP
Sbjct: 316 LVLSGFNGKLAWSMSNVKGDNQDLFLEKIKREGNRVSYMVDGKWLP 361
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,944,691
Number of Sequences: 539616
Number of extensions: 1378278
Number of successful extensions: 4591
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4580
Number of HSP's gapped (non-prelim): 14
length of query: 137
length of database: 191,569,459
effective HSP length: 102
effective length of query: 35
effective length of database: 136,528,627
effective search space: 4778501945
effective search space used: 4778501945
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)