Query 032595
Match_columns 137
No_of_seqs 46 out of 48
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 03:29:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032595.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032595hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4821 Predicted Na+-dependen 99.8 1.1E-21 2.4E-26 162.9 2.3 129 5-137 159-287 (287)
2 PF13593 DUF4137: SBF-like CPA 99.8 1.6E-20 3.5E-25 157.3 7.1 113 2-124 199-313 (313)
3 COG0385 Predicted Na+-dependen 98.4 6.8E-07 1.5E-11 77.0 6.7 108 3-129 203-311 (319)
4 TIGR00841 bass bile acid trans 96.3 0.033 7.2E-07 46.2 8.7 82 30-127 198-280 (286)
5 TIGR00832 acr3 arsenical-resis 93.8 0.18 3.8E-06 43.0 6.1 81 21-114 240-320 (328)
6 COG0798 ACR3 Arsenite efflux p 46.9 1.9E+02 0.0042 25.8 9.1 66 64-132 274-339 (342)
7 PF13940 Ldr_toxin: Toxin Ldr, 39.3 26 0.00055 21.7 1.8 20 102-126 16-35 (35)
8 COG1380 Putative effector of m 36.6 31 0.00067 26.5 2.3 49 80-128 72-120 (128)
9 COG2855 Predicted membrane pro 29.0 1.5E+02 0.0032 26.4 5.5 65 65-129 57-123 (334)
10 PRK01821 hypothetical protein; 27.4 66 0.0014 24.7 2.8 46 81-127 77-123 (133)
11 PRK09510 tolA cell envelope in 27.2 79 0.0017 28.4 3.6 24 25-48 10-33 (387)
No 1
>KOG4821 consensus Predicted Na+-dependent cotransporter [General function prediction only]
Probab=99.83 E-value=1.1e-21 Score=162.94 Aligned_cols=129 Identities=7% Similarity=-0.188 Sum_probs=120.3
Q ss_pred ecceEEeecccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccccccCceEEEEEeeccchHHHH
Q 032595 5 QVPWMQVSRSRSLLLMVKPQVFLVAIWMGTLLHLILLAFNAFSVWSLSVISGDCQSVFAKKENTNAVVLVASQKTLPVLV 84 (137)
Q Consensus 5 ~i~W~qvS~sr~~Ll~~~~~~~~~~i~~gvllHl~~L~~N~~~~~~l~~~~g~~~~~~~~~~~~~Avvi~aSQKTLPVaV 84 (137)
..+|+|.|++|.+|++.+|+.+..+.+.|++.|.-.+.+|......++.+.|+..+ .+++..++..++||||+|+.+
T Consensus 159 ~~~~i~~~l~q~LL~~~~~~~~~~a~g~gi~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~k~~~i~i 235 (287)
T KOG4821|consen 159 LGAFITPALVQMLLNRAPFAYGNPATGNGIGALYGRVMKQVGLSVFVPLFVGQVIQ---NCFPKGTAYYLGFLKKYHIKI 235 (287)
T ss_pred hhhHHHHHHHHHHHccCCccccCccccchHHHHHHHHHHhhcceEEehhhcccccc---cccCCceeEEeeccccccchh
Confidence 57899999999999999999999999999999999999999999999888888765 467788999999999999999
Q ss_pred HHHHhhcccccCCcceehhHHHHHHHHHHHHHHHHHHHhhccccccccccccC
Q 032595 85 AVVEQLGCAFGESGLLVLPCVAAHLTQIIMDSFLVNFWLRRDKDLSSNNAKVA 137 (137)
Q Consensus 85 aVi~~L~~~~g~~GLlvlPcV~~Hl~Qi~iDs~La~~w~~~d~~~~~~~~~~~ 137 (137)
.+.++|++.++|.|++++||++.|+||++||+.+++.|.++..+. +.+.|.|
T Consensus 236 ~~~~~l~~~f~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~t-~~~~~~a 287 (287)
T KOG4821|consen 236 GSYMLLLIMFSSFSTAFYQDAFTSVSHVCIIFLCFFNLGIYIFFT-GLSYLCA 287 (287)
T ss_pred hHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHeeec-cceEecC
Confidence 999999999999999999999999999999999999999998876 7777654
No 2
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=99.82 E-value=1.6e-20 Score=157.25 Aligned_cols=113 Identities=24% Similarity=0.321 Sum_probs=104.5
Q ss_pred eeeecceEEeecc--cchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccccccCceEEEEEeeccc
Q 032595 2 VILQVPWMQVSRS--RSLLLMVKPQVFLVAIWMGTLLHLILLAFNAFSVWSLSVISGDCQSVFAKKENTNAVVLVASQKT 79 (137)
Q Consensus 2 ~L~~i~W~qvS~s--r~~Ll~~~~~~~~~~i~~gvllHl~~L~~N~~~~~~l~~~~g~~~~~~~~~~~~~Avvi~aSQKT 79 (137)
.|.+|+|++.|++ ++...+.++..++..+..++.+|++++.+|+...+.+++ ++||++|+.+++||||
T Consensus 199 ~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~r~~~~----------~~~d~iA~~F~gs~Ks 268 (313)
T PF13593_consen 199 ALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLLLVVLVLGWLAARLLGF----------SRPDRIAVLFCGSQKS 268 (313)
T ss_pred HHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC----------ChhhEEEEEEEcCcCc
Confidence 3678999999999 888889999999999999999999999999999987763 3788999999999999
Q ss_pred hHHHHHHHHhhcccccCCcceehhHHHHHHHHHHHHHHHHHHHhh
Q 032595 80 LPVLVAVVEQLGCAFGESGLLVLPCVAAHLTQIIMDSFLVNFWLR 124 (137)
Q Consensus 80 LPVaVaVi~~L~~~~g~~GLlvlPcV~~Hl~Qi~iDs~La~~w~~ 124 (137)
+|+++.+++.+.++.++.|++++|++++|..|+++|+++|++|+|
T Consensus 269 l~~gvpl~~~lf~~~~~~~~~~lP~~iyh~~Ql~~~s~la~~~~r 313 (313)
T PF13593_consen 269 LALGVPLASILFPGHPDLGLIVLPLMIYHPLQLFVGSFLASRLAR 313 (313)
T ss_pred chhHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999998877789999999999999999999999999986
No 3
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=98.40 E-value=6.8e-07 Score=76.97 Aligned_cols=108 Identities=19% Similarity=0.246 Sum_probs=84.1
Q ss_pred eeecceEEeecccchhhccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhcCCcccccccccCceEEEEEeeccchH
Q 032595 3 ILQVPWMQVSRSRSLLLMVKPQVFLVAIWMGTLLH-LILLAFNAFSVWSLSVISGDCQSVFAKKENTNAVVLVASQKTLP 81 (137)
Q Consensus 3 L~~i~W~qvS~sr~~Ll~~~~~~~~~~i~~gvllH-l~~L~~N~~~~~~l~~~~g~~~~~~~~~~~~~Avvi~aSQKTLP 81 (137)
+.+|+..-.|.+++.+.+.+. .+...+.+| ++.+..+|...+.+++ + ++++|++.|=+++|++-
T Consensus 203 illIv~~~~s~~~~~~~~~~~-----~v~~~v~~~n~lg~~~gy~~ar~~g~---------~-~a~~iti~ie~g~qn~~ 267 (319)
T COG0385 203 ILLIVYAAFSAAVENGIWSGL-----LIFVAVILHNLLGLLLGYFGARLLGF---------D-KADEITIAIEGGMQNLG 267 (319)
T ss_pred HHHHHHHHHHHHHHhhhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhCC---------C-hhheeeEEEeeccccHH
Confidence 345666667777777777666 233334444 4567888888888874 3 78899999999999999
Q ss_pred HHHHHHHhhcccccCCcceehhHHHHHHHHHHHHHHHHHHHhhccccc
Q 032595 82 VLVAVVEQLGCAFGESGLLVLPCVAAHLTQIIMDSFLVNFWLRRDKDL 129 (137)
Q Consensus 82 VaVaVi~~L~~~~g~~GLlvlPcV~~Hl~Qi~iDs~La~~w~~~d~~~ 129 (137)
-++....... ++ |.+++|..++|.-|.+..++++++|+||+.|-
T Consensus 268 lg~alA~~f~---~~-~~~alP~aif~~~q~~~~a~la~~~~~~~~~~ 311 (319)
T COG0385 268 LGAALAAAFF---GN-PLMALPLAIFSVWQNMSGAVLAGLYARRILKA 311 (319)
T ss_pred HHHHHHHhcC---CC-chhHhHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9888866532 23 99999999999999999999999999987543
No 4
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=96.25 E-value=0.033 Score=46.16 Aligned_cols=82 Identities=9% Similarity=0.099 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccccccCceEEEEEeeccchHHHHHHHH-hhcccccCCcceehhHHHHH
Q 032595 30 IWMGTLLHLILLAFNAFSVWSLSVISGDCQSVFAKKENTNAVVLVASQKTLPVLVAVVE-QLGCAFGESGLLVLPCVAAH 108 (137)
Q Consensus 30 i~~gvllHl~~L~~N~~~~~~l~~~~g~~~~~~~~~~~~~Avvi~aSQKTLPVaVaVi~-~L~~~~g~~GLlvlPcV~~H 108 (137)
+...++++++.+.+.+...+.++. +++++|++.+-+++|-...|+.+.. +++ +..++|..++-
T Consensus 198 ~~~~~ll~~~~~~~g~~~a~~~~l----------~~~~~~t~~~~~g~qN~~lal~la~~~f~------~~~a~~~~~~~ 261 (286)
T TIGR00841 198 LLVGILLPLAGFLLGYLLAKLAGL----------PWARCRTISIEVGMQNSQLCSTIAQLSFS------PEVAVPSAIFP 261 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC----------CHhhheeeeeeeecccHHHHHHHHHHhcC------hHHHHHHHHHH
Confidence 345677888888888887776552 3567888888888777778888765 342 45689998888
Q ss_pred HHHHHHHHHHHHHHhhccc
Q 032595 109 LTQIIMDSFLVNFWLRRDK 127 (137)
Q Consensus 109 l~Qi~iDs~La~~w~~~d~ 127 (137)
+.|.+....++.+|+|++.
T Consensus 262 v~~~~~~~~~a~~~~~~~~ 280 (286)
T TIGR00841 262 LIYALFQLAFALLFLIIHF 280 (286)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888889999999988765
No 5
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=93.82 E-value=0.18 Score=43.01 Aligned_cols=81 Identities=14% Similarity=0.087 Sum_probs=63.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccccccCceEEEEEeeccchHHHHHHHHhhcccccCCcce
Q 032595 21 VKPQVFLVAIWMGTLLHLILLAFNAFSVWSLSVISGDCQSVFAKKENTNAVVLVASQKTLPVLVAVVEQLGCAFGESGLL 100 (137)
Q Consensus 21 ~~~~~~~~~i~~gvllHl~~L~~N~~~~~~l~~~~g~~~~~~~~~~~~~Avvi~aSQKTLPVaVaVi~~L~~~~g~~GLl 100 (137)
..+..+..+...-+++|+..+...+...+.++. ++|++||+.+-+++|..+.++.+...+- ++.++.
T Consensus 240 ~~~~~i~~~~~~v~l~~~~~~~lg~~~~r~~~l----------~~~~~~a~~~e~g~qN~~lai~lA~~~f---~~~~~~ 306 (328)
T TIGR00832 240 ELPLDIALIAIPLLIYFYIMFFLTFALAKKLGL----------PYSITAPAAFTGASNNFELAIAVAISLF---GLNSGA 306 (328)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc----------ChhhhhhheehhhhhhHHHHHHHHHHhC---CCCccc
Confidence 445556665556667888888888888887763 3788999999999999999999976442 455789
Q ss_pred ehhHHHHHHHHHHH
Q 032595 101 VLPCVAAHLTQIIM 114 (137)
Q Consensus 101 vlPcV~~Hl~Qi~i 114 (137)
+.|.+.+-+-|+..
T Consensus 307 a~~~~~~~l~e~~~ 320 (328)
T TIGR00832 307 ALATVVGPLIEVPV 320 (328)
T ss_pred HHHHHhhhhhehhh
Confidence 99999888888754
No 6
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=46.94 E-value=1.9e+02 Score=25.79 Aligned_cols=66 Identities=26% Similarity=0.280 Sum_probs=43.6
Q ss_pred cccCceEEEEEeeccchHHHHHHHHhhcccccCCcceehhHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 032595 64 KKENTNAVVLVASQKTLPVLVAVVEQLGCAFGESGLLVLPCVAAHLTQIIMDSFLVNFWLRRDKDLSSN 132 (137)
Q Consensus 64 ~~~~~~Avvi~aSQKTLPVaVaVi~~L~~~~g~~GLlvlPcV~~Hl~Qi~iDs~La~~w~~~d~~~~~~ 132 (137)
+.|++.++.+.+.=+---+|+++.--+ +|-++-+++..+++-+.|+-+==.+++.|.+-.++.+.+
T Consensus 274 ~y~~~~~~~ft~aSNnfeLAiAvAi~l---fG~~s~aA~a~vigpLvEVpvml~lV~v~~~~~~~~~~~ 339 (342)
T COG0798 274 PYEDAAALVFTGASNNFELAIAVAIAL---FGLTSGAALATVVGPLVEVPVMLGLVKVALRIRKKYFKN 339 (342)
T ss_pred ChhhhhceeeeeccccHHHHHHHHHHh---cCccccchhhhhccchhhHHHHHHHHHHHHHHhHhhccc
Confidence 366677777777666444444442222 245677888899999999988888888776655554333
No 7
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=39.28 E-value=26 Score=21.72 Aligned_cols=20 Identities=30% Similarity=0.576 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcc
Q 032595 102 LPCVAAHLTQIIMDSFLVNFWLRRD 126 (137)
Q Consensus 102 lPcV~~Hl~Qi~iDs~La~~w~~~d 126 (137)
-|.|++ ++-|.+++||++|.
T Consensus 16 AP~iag-----Ii~s~iv~w~~~RK 35 (35)
T PF13940_consen 16 APIIAG-----IIASLIVGWLRNRK 35 (35)
T ss_pred hHHHHH-----HHHHHHHHHHHhcC
Confidence 355555 45688899998873
No 8
>COG1380 Putative effector of murein hydrolase LrgA [General function prediction only]
Probab=36.57 E-value=31 Score=26.46 Aligned_cols=49 Identities=12% Similarity=0.279 Sum_probs=38.3
Q ss_pred hHHHHHHHHhhcccccCCcceehhHHHHHHHHHHHHHHHHHHHhhcccc
Q 032595 80 LPVLVAVVEQLGCAFGESGLLVLPCVAAHLTQIIMDSFLVNFWLRRDKD 128 (137)
Q Consensus 80 LPVaVaVi~~L~~~~g~~GLlvlPcV~~Hl~Qi~iDs~La~~w~~~d~~ 128 (137)
.|.+|.|++|..--..+..-...++++.-+-=+.+-.+++++-.|+.+|
T Consensus 72 VPa~VgVm~y~~~l~~~~~~Il~~~iiST~lv~~vtg~~~~~l~~~~~~ 120 (128)
T COG1380 72 VPAGVGVMNYFDLLAADGLPILVVIIISTLLVLLVTGWVVQLLIRWQSK 120 (128)
T ss_pred hcchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788999998875555556677888898888888889999887666554
No 9
>COG2855 Predicted membrane protein [Function unknown]
Probab=28.97 E-value=1.5e+02 Score=26.37 Aligned_cols=65 Identities=20% Similarity=0.251 Sum_probs=52.2
Q ss_pred ccCceEEEEEeeccchHHHHHHHH-hhc-ccccCCcceehhHHHHHHHHHHHHHHHHHHHhhccccc
Q 032595 65 KENTNAVVLVASQKTLPVLVAVVE-QLG-CAFGESGLLVLPCVAAHLTQIIMDSFLVNFWLRRDKDL 129 (137)
Q Consensus 65 ~~~~~Avvi~aSQKTLPVaVaVi~-~L~-~~~g~~GLlvlPcV~~Hl~Qi~iDs~La~~w~~~d~~~ 129 (137)
++...+-+--+|+|=|+.+|...+ +++ .+..+.|.-.++.++..++=.|+=+++.+++.+-|+|.
T Consensus 57 ~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~i~~~G~~~v~~~~~~l~~t~~~~~~lg~~lgld~~~ 123 (334)
T COG2855 57 PAQTSAGITFSSKKLLRLGIVLLGFRLTLSDIADVGGSGVLIIAITLSSTFLFAYFLGKLLGLDKKL 123 (334)
T ss_pred hhhhccchhhhHHHHHHHHHHHHcceeeHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 345667888899999999999876 333 34466788888888888888899999999999999876
No 10
>PRK01821 hypothetical protein; Provisional
Probab=27.42 E-value=66 Score=24.67 Aligned_cols=46 Identities=15% Similarity=0.314 Sum_probs=33.1
Q ss_pred HHHHHHHHhhcccccCCc-ceehhHHHHHHHHHHHHHHHHHHHhhccc
Q 032595 81 PVLVAVVEQLGCAFGESG-LLVLPCVAAHLTQIIMDSFLVNFWLRRDK 127 (137)
Q Consensus 81 PVaVaVi~~L~~~~g~~G-LlvlPcV~~Hl~Qi~iDs~La~~w~~~d~ 127 (137)
|.+|.+++|.+- +.++| -+++.+++.-+.=+++-++.+++..||++
T Consensus 77 Pa~VGim~~~~l-l~~~~~~il~~ivvST~lvl~vtg~~~~~l~~~~~ 123 (133)
T PRK01821 77 PIGVGVMQYYDL-LRAQFGPIVVSCIVSTLVVLLVVGWSSHYVHGERK 123 (133)
T ss_pred hhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 788899988763 33444 45667777777777777888888777766
No 11
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=27.21 E-value=79 Score=28.43 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 032595 25 VFLVAIWMGTLLHLILLAFNAFSV 48 (137)
Q Consensus 25 ~~~~~i~~gvllHl~~L~~N~~~~ 48 (137)
.+...+.+++++|++++++=++..
T Consensus 10 ~~~~aiiiSv~LHvlLi~lLi~gs 33 (387)
T PRK09510 10 KLKRAIIISVVLHIILFALLIWSS 33 (387)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHh
Confidence 344567789999999988876654
Done!