Query 032595
Match_columns 137
No_of_seqs 46 out of 48
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 05:01:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032595.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032595hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 98.8 6.2E-10 2.1E-14 92.4 1.0 107 4-129 209-317 (332)
2 1xrd_A LH-1, light-harvesting 36.6 52 0.0018 21.0 4.0 20 27-46 19-41 (52)
3 3dcm_X AdoMet, uncharacterized 24.7 15 0.00052 28.6 -0.1 21 106-126 172-192 (192)
4 1lgh_A LH II, B800/850, light 23.0 88 0.003 20.1 3.4 22 26-47 23-47 (56)
5 3dl8_C SECE; RECA-type ATPase 20.9 1.7E+02 0.0057 18.5 4.7 40 14-53 22-61 (65)
6 3din_D Preprotein translocase 14.1 2.5E+02 0.0087 17.6 4.4 40 14-53 22-61 (65)
7 2nyg_A YOKD protein; PFAM02522 11.0 64 0.0022 26.0 0.5 41 70-110 32-76 (273)
8 3ijw_A Aminoglycoside N3-acety 9.5 78 0.0027 25.6 0.5 40 69-108 33-76 (268)
9 2kix_A BM2 protein; channel, t 9.4 92 0.0032 18.0 0.6 10 103-112 22-31 (33)
10 3sma_A FRBF; N-acetyl transfer 9.0 84 0.0029 25.8 0.5 40 69-108 40-83 (286)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=98.82 E-value=6.2e-10 Score=92.42 Aligned_cols=107 Identities=13% Similarity=0.151 Sum_probs=79.3
Q ss_pred eecceEEeecccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccccccCceEEEE-EeeccchHH
Q 032595 4 LQVPWMQVSRSRSLLLMVKPQVFLVAIWMGTLLHLILLAFNAFSVWSLSVISGDCQSVFAKKENTNAVVL-VASQKTLPV 82 (137)
Q Consensus 4 ~~i~W~qvS~sr~~Ll~~~~~~~~~~i~~gvllHl~~L~~N~~~~~~l~~~~g~~~~~~~~~~~~~Avvi-~aSQKTLPV 82 (137)
.++++..++.+++.+.+.... .+...+++|.+.+...+...+.++. ++++++++.+ .++||+ ..
T Consensus 209 lliv~~~~~~~~~~~~~~~~~----v~~~~~l~~~~~~~lg~~~~r~~~~----------~~~~~~ti~~e~G~qNs-~l 273 (332)
T 3zux_A 209 VLIIGAVVGASKGKIMESGLL----IFAVVVLHNGIGYLLGFFAAKWTGL----------PYDAQKALTIEVGMQNS-GL 273 (332)
T ss_dssp HHHHHHHHHHTHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHTTC----------CHHHHHHHHHHHHCCCH-HH
T ss_pred HHHhHHHHHhhhHHHHhccHH----HHHHHHHHHHHHHHHHHHHHHHhCC----------CHhHhhhhhhhhhhccH-HH
Confidence 345566667777766655432 2345677788888888888876663 3678999999 899999 67
Q ss_pred HHHHHH-hhcccccCCcceehhHHHHHHHHHHHHHHHHHHHhhccccc
Q 032595 83 LVAVVE-QLGCAFGESGLLVLPCVAAHLTQIIMDSFLVNFWLRRDKDL 129 (137)
Q Consensus 83 aVaVi~-~L~~~~g~~GLlvlPcV~~Hl~Qi~iDs~La~~w~~~d~~~ 129 (137)
++++.. ++ ++++..++|+.++|+-|.+.+++++.+|+||+++-
T Consensus 274 ai~lA~~~F----~~~p~~alp~~iy~~~q~i~~~~la~~~~~~~~~~ 317 (332)
T 3zux_A 274 AAALAAAHF----AAAPVVAVPGALFSVWHNISGSLLATYWAAKAGKH 317 (332)
T ss_dssp HHHHHHHHS----TTCGGGGHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHc----CCCchHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 777754 44 34679999999999999999999999999998754
No 2
>1xrd_A LH-1, light-harvesting protein B-880, alpha chain; membrane spanning helix, pigment binding, photosynthesis, membrane protein; NMR {Rhodospirillum rubrum} SCOP: f.3.1.1
Probab=36.59 E-value=52 Score=20.99 Aligned_cols=20 Identities=35% Similarity=0.585 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHH---HHHH
Q 032595 27 LVAIWMGTLLHLILLA---FNAF 46 (137)
Q Consensus 27 ~~~i~~gvllHl~~L~---~N~~ 46 (137)
....++++++|++.|. ||++
T Consensus 19 ~fl~vlAl~IHfilLSt~~fNWl 41 (52)
T 1xrd_A 19 TFLFVLALLIHFILLSTERFNWL 41 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCcccc
Confidence 3445678899999996 5555
No 3
>3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima}
Probab=24.71 E-value=15 Score=28.59 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 032595 106 AAHLTQIIMDSFLVNFWLRRD 126 (137)
Q Consensus 106 ~~Hl~Qi~iDs~La~~w~~~d 126 (137)
+.|--||++|.++-+.|+|||
T Consensus 172 l~~AVaIiLdrl~g~~~~~~~ 192 (192)
T 3dcm_X 172 VRAAAAIIIDRLIGENYARRD 192 (192)
T ss_dssp HHHHHHHHHHHHTTTCC----
T ss_pred HHHHHHHHHHHHcCchhhccC
Confidence 578889999999999999987
No 4
>1lgh_A LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=22.96 E-value=88 Score=20.13 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHH
Q 032595 26 FLVAIWMGTLLHLILLA---FNAFS 47 (137)
Q Consensus 26 ~~~~i~~gvllHl~~L~---~N~~~ 47 (137)
+..+...++++|++.|. ||++.
T Consensus 23 ~~~v~vlAllIH~~lLs~~~fnWl~ 47 (56)
T 1lgh_A 23 WIVATVVAIAVHAAVLAAPGFNWIA 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGCHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCcchhc
Confidence 34455678889999985 55553
No 5
>3dl8_C SECE; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=20.94 E-value=1.7e+02 Score=18.50 Aligned_cols=40 Identities=25% Similarity=0.437 Sum_probs=27.1
Q ss_pred ccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032595 14 SRSLLLMVKPQVFLVAIWMGTLLHLILLAFNAFSVWSLSV 53 (137)
Q Consensus 14 sr~~Ll~~~~~~~~~~i~~gvllHl~~L~~N~~~~~~l~~ 53 (137)
+|+++...-..++...+..++.+-++=.+++.+.-+.++.
T Consensus 22 tr~e~~~~T~vViv~v~i~~~~i~~vD~~~~~~~~~i~~~ 61 (65)
T 3dl8_C 22 SRELVVKATISVIIFSLAIGVYLWILDLTFTKIISFILSL 61 (65)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777888888888888888888888887776664
No 6
>3din_D Preprotein translocase subunit SECE; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=14.12 E-value=2.5e+02 Score=17.60 Aligned_cols=40 Identities=15% Similarity=0.141 Sum_probs=30.7
Q ss_pred ccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032595 14 SRSLLLMVKPQVFLVAIWMGTLLHLILLAFNAFSVWSLSV 53 (137)
Q Consensus 14 sr~~Ll~~~~~~~~~~i~~gvllHl~~L~~N~~~~~~l~~ 53 (137)
+|+++...-..++...+..++.+-++=.+++.+.-..++.
T Consensus 22 tr~e~~~~T~vViv~~~i~~~~i~~vD~~~~~~~~~i~~~ 61 (65)
T 3din_D 22 SRKELLTSFGVVLVILAVTSVYFFVLDFIFSGVVSAIFKA 61 (65)
T ss_dssp HCCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4667777777788888888888888888888887766664
No 7
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=10.96 E-value=64 Score=26.04 Aligned_cols=41 Identities=27% Similarity=0.377 Sum_probs=32.3
Q ss_pred EEEEEeeccchH----HHHHHHHhhcccccCCcceehhHHHHHHH
Q 032595 70 AVVLVASQKTLP----VLVAVVEQLGCAFGESGLLVLPCVAAHLT 110 (137)
Q Consensus 70 Avvi~aSQKTLP----VaVaVi~~L~~~~g~~GLlvlPcV~~Hl~ 110 (137)
.+++=+|=|.+= =+.+|++.|...+|+.|.++.|+-..+.+
T Consensus 32 ~llVHsSl~~lG~v~gg~~~vi~AL~~~vg~~GTLvmPtft~~~~ 76 (273)
T 2nyg_A 32 TVLVHSSLSSIGWVNGGAVAVIQALIDVVTEEGTIVMPSQSVELS 76 (273)
T ss_dssp EEEEEECSGGGCCBTTHHHHHHHHHHHHHTTTSEEEEECCCTTSS
T ss_pred EEEEEechHHhCCCCCCHHHHHHHHHHHhCCCCeEEEeccccccC
Confidence 677777777663 37889999999999999999998665543
No 8
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=9.48 E-value=78 Score=25.61 Aligned_cols=40 Identities=28% Similarity=0.370 Sum_probs=32.3
Q ss_pred eEEEEEeeccchH----HHHHHHHhhcccccCCcceehhHHHHH
Q 032595 69 NAVVLVASQKTLP----VLVAVVEQLGCAFGESGLLVLPCVAAH 108 (137)
Q Consensus 69 ~Avvi~aSQKTLP----VaVaVi~~L~~~~g~~GLlvlPcV~~H 108 (137)
-.+++=+|-|.+= =+.+|++.|...+|+.|.++.|+--..
T Consensus 33 d~llVHsSl~~lG~v~gg~~~vi~AL~~~vg~~GTLvmPt~t~~ 76 (268)
T 3ijw_A 33 MTVIVHSSLSSIGWISGGAVAVVEALMEVITEEGTIIMPTQSSD 76 (268)
T ss_dssp CEEEEEECTGGGCCBTTHHHHHHHHHHHHHCTTSEEEEECCCGG
T ss_pred CEEEEEechHHhCCCCCCHHHHHHHHHHHhCCCCeEEEeccccc
Confidence 3677778887764 467899999999999999999986554
No 9
>2kix_A BM2 protein; channel, transport protein; NMR {Influenza b virus}
Probab=9.39 E-value=92 Score=17.97 Aligned_cols=10 Identities=40% Similarity=0.541 Sum_probs=5.8
Q ss_pred hHHHHHHHHH
Q 032595 103 PCVAAHLTQI 112 (137)
Q Consensus 103 PcV~~Hl~Qi 112 (137)
.--++|+|||
T Consensus 22 awtighlnqi 31 (33)
T 2kix_A 22 AWTIGHLNQI 31 (33)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhh
Confidence 3345677765
No 10
>3sma_A FRBF; N-acetyl transferase, acetyl COA binding, transferase; HET: ACO; 2.00A {Streptomyces rubellomurinus}
Probab=8.96 E-value=84 Score=25.81 Aligned_cols=40 Identities=33% Similarity=0.378 Sum_probs=32.3
Q ss_pred eEEEEEeeccchH----HHHHHHHhhcccccCCcceehhHHHHH
Q 032595 69 NAVVLVASQKTLP----VLVAVVEQLGCAFGESGLLVLPCVAAH 108 (137)
Q Consensus 69 ~Avvi~aSQKTLP----VaVaVi~~L~~~~g~~GLlvlPcV~~H 108 (137)
-.+++=+|-|.+= =+.+|++.|...+|+.|.++.|+--..
T Consensus 40 d~llVHsSL~~lG~v~Gga~~vi~AL~~~vg~~GTLvmPt~t~~ 83 (286)
T 3sma_A 40 GVLLVHASLSALGWVCGGAQAVVLALQDAVGKEGTLVMPTFSGD 83 (286)
T ss_dssp CEEEEEECSTTSCEETTHHHHHHHHHHHHHCTTCEEEEECCCTT
T ss_pred CEEEEEechHHhCCCCCCHHHHHHHHHHHhcCCCEEEEeccCcc
Confidence 3677778888764 467899999999999999999996543
Done!