Query 032595
Match_columns 137
No_of_seqs 46 out of 48
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 05:01:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032595.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032595hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xrda1 f.3.1.1 (A:1-52) Light 31.3 32 0.0024 20.5 4.0 17 30-46 22-41 (52)
2 d1w7ca2 d.17.2.1 (A:43-169) Ly 9.1 96 0.007 21.1 2.6 17 63-79 76-92 (127)
3 d1h2ca_ b.31.1.1 (A:) EV matri 5.3 1.4E+02 0.01 20.1 1.8 20 74-93 32-51 (125)
4 d1ijda_ f.3.1.1 (A:) Light-har 4.9 3.1E+02 0.023 15.4 3.2 16 26-41 20-35 (46)
5 d1nkza_ f.3.1.1 (A:) Light-har 4.4 3.7E+02 0.027 15.5 3.2 17 26-42 20-36 (53)
6 d1iuga_ c.67.1.3 (A:) Subgroup 3.7 2.1E+02 0.015 20.7 1.9 16 65-80 171-186 (348)
7 d1wf9a1 d.15.1.1 (A:8-101) NPL 3.5 1.8E+02 0.013 18.8 1.1 19 8-26 40-58 (94)
8 d1lgha_ f.3.1.1 (A:) Light-har 3.3 4.6E+02 0.034 14.9 3.2 22 27-48 24-48 (56)
9 d1qcza_ c.23.8.1 (A:) N5-CAIR 3.1 4.3E+02 0.031 18.0 3.0 24 68-91 2-25 (163)
10 d1jb0x_ f.23.20.1 (X:) Subunit 3.0 3.7E+02 0.027 13.6 1.9 12 38-49 11-22 (29)
No 1
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=31.26 E-value=32 Score=20.48 Aligned_cols=17 Identities=41% Similarity=0.735 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHH---HHHH
Q 032595 30 IWMGTLLHLILLA---FNAF 46 (137)
Q Consensus 30 i~~gvllHl~~L~---~N~~ 46 (137)
..+++.+|+++|. ||++
T Consensus 22 ~~LAl~IHfiLLSt~rfNWl 41 (52)
T d1xrda1 22 FVLALLIHFILLSTERFNWL 41 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCccccc
Confidence 3577889999998 5655
No 2
>d1w7ca2 d.17.2.1 (A:43-169) Lysyl oxidase PplO, domains 1 and 2 {Yeast (Pichia pastoris) [TaxId: 4922]}
Probab=9.10 E-value=96 Score=21.08 Aligned_cols=17 Identities=18% Similarity=0.218 Sum_probs=13.9
Q ss_pred ccccCceEEEEEeeccc
Q 032595 63 AKKENTNAVVLVASQKT 79 (137)
Q Consensus 63 ~~~~~~~Avvi~aSQKT 79 (137)
.|.+++|++|.-+.|..
T Consensus 76 ~P~R~Arvvi~~G~~~~ 92 (127)
T d1w7ca2 76 LPPRNARTVVYFGEGEE 92 (127)
T ss_dssp CCCCEEEEEEEECSSSS
T ss_pred CCCceEEEEEEcCCCCC
Confidence 34678999999999865
No 3
>d1h2ca_ b.31.1.1 (A:) EV matrix protein {Ebola virus [TaxId: 205488]}
Probab=5.35 E-value=1.4e+02 Score=20.05 Aligned_cols=20 Identities=25% Similarity=0.152 Sum_probs=17.0
Q ss_pred EeeccchHHHHHHHHhhccc
Q 032595 74 VASQKTLPVLVAVVEQLGCA 93 (137)
Q Consensus 74 ~aSQKTLPVaVaVi~~L~~~ 93 (137)
++||||-|.+=++...+.++
T Consensus 32 i~~~~~y~~~~t~aa~~~~s 51 (125)
T d1h2ca_ 32 VADQKTYSFDSTTAAIMLAS 51 (125)
T ss_dssp EECSSSSCHHHHHHHHHHSC
T ss_pred cccccccchHHHHHHHHhcc
Confidence 68999999999998877654
No 4
>d1ijda_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=4.93 E-value=3.1e+02 Score=15.43 Aligned_cols=16 Identities=19% Similarity=0.198 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 032595 26 FLVAIWMGTLLHLILL 41 (137)
Q Consensus 26 ~~~~i~~gvllHl~~L 41 (137)
+-.+...++++|+..|
T Consensus 20 LgsVav~s~~VH~avl 35 (46)
T d1ijda_ 20 LGAVAITALLVHAAVL 35 (46)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344566777888765
No 5
>d1nkza_ f.3.1.1 (A:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=4.37 E-value=3.7e+02 Score=15.51 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032595 26 FLVAIWMGTLLHLILLA 42 (137)
Q Consensus 26 ~~~~i~~gvllHl~~L~ 42 (137)
+-.+...++++|+..|.
T Consensus 20 LgsVav~s~~VH~avl~ 36 (53)
T d1nkza_ 20 LGSVTVIAILVHLAILS 36 (53)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33455667788987664
No 6
>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}
Probab=3.72 E-value=2.1e+02 Score=20.67 Aligned_cols=16 Identities=25% Similarity=0.104 Sum_probs=13.4
Q ss_pred ccCceEEEEEeeccch
Q 032595 65 KENTNAVVLVASQKTL 80 (137)
Q Consensus 65 ~~~~~Avvi~aSQKTL 80 (137)
++..+-+++.+|||.+
T Consensus 171 d~~~iD~~~~~sqK~l 186 (348)
T d1iuga_ 171 EAMGVDAAASGSQKGL 186 (348)
T ss_dssp GGGTCSEEEEESSSTT
T ss_pred ccccCCEEEeccccce
Confidence 4557899999999988
No 7
>d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=3.50 E-value=1.8e+02 Score=18.76 Aligned_cols=19 Identities=37% Similarity=0.480 Sum_probs=15.9
Q ss_pred eEEeecccchhhccchHHH
Q 032595 8 WMQVSRSRSLLLMVKPQVF 26 (137)
Q Consensus 8 W~qvS~sr~~Ll~~~~~~~ 26 (137)
=|++|-.+++|+.-+|..+
T Consensus 40 ~Q~LSl~~~llL~k~P~~~ 58 (94)
T d1wf9a1 40 NQTLSTNRNLLLAKSPSDF 58 (94)
T ss_dssp TCCCBSSGGGGTCCSHHHH
T ss_pred cceeecChhhhccCCcccc
Confidence 3788999999999888875
No 8
>d1lgha_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=3.28 E-value=4.6e+02 Score=14.88 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHH
Q 032595 27 LVAIWMGTLLHLILLA---FNAFSV 48 (137)
Q Consensus 27 ~~~i~~gvllHl~~L~---~N~~~~ 48 (137)
..+-..++.+|...|+ ||+.+.
T Consensus 24 ivatvvaiavhaavlaapgfnwial 48 (56)
T d1lgha_ 24 IVATVVAIAVHAAVLAAPGFNWIAL 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHSGGGCHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCeeee
Confidence 3444567788988774 777754
No 9
>d1qcza_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Escherichia coli [TaxId: 562]}
Probab=3.08 E-value=4.3e+02 Score=17.95 Aligned_cols=24 Identities=8% Similarity=0.191 Sum_probs=18.9
Q ss_pred ceEEEEEeeccchHHHHHHHHhhc
Q 032595 68 TNAVVLVASQKTLPVLVAVVEQLG 91 (137)
Q Consensus 68 ~~Avvi~aSQKTLPVaVaVi~~L~ 91 (137)
++-.|||+|++=+|++=.....|.
T Consensus 2 aKV~IImGS~SD~~~~~~a~~~L~ 25 (163)
T d1qcza_ 2 ARVAIVMGSKSDWATMQFAAEIFE 25 (163)
T ss_dssp CCEEEEESSGGGHHHHHHHHHHHH
T ss_pred CeEEEEECcHhhHHHHHHHHHHHH
Confidence 346789999999999887766553
No 10
>d1jb0x_ f.23.20.1 (X:) Subunit PsaX of photosystem I reaction centre {Synechococcus elongatus [TaxId: 32046]}
Probab=3.03 E-value=3.7e+02 Score=13.60 Aligned_cols=12 Identities=33% Similarity=0.418 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHH
Q 032595 38 LILLAFNAFSVW 49 (137)
Q Consensus 38 l~~L~~N~~~~~ 49 (137)
+.+|++|+++..
T Consensus 11 ~lllainflvaa 22 (29)
T d1jb0x_ 11 VLLLAINFLVAA 22 (29)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 346778887654
Done!