Query 032596
Match_columns 137
No_of_seqs 109 out of 403
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 03:29:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032596.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032596hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03650 MPC: Uncharacterised 100.0 2.4E-54 5.1E-59 325.5 5.6 101 31-131 4-104 (119)
2 KOG1589 Uncharacterized conser 100.0 1.7E-52 3.6E-57 314.1 5.8 106 25-132 4-109 (118)
3 KOG1590 Uncharacterized conser 100.0 7.3E-46 1.6E-50 282.4 3.7 100 33-132 11-113 (132)
4 PF03083 MtN3_slv: Sugar efflu 96.4 0.00057 1.2E-08 46.8 -0.7 57 66-124 28-84 (87)
5 KOG1623 Multitransmembrane pro 89.7 0.18 3.9E-06 42.5 1.6 87 37-125 116-210 (243)
6 PF15021 DUF4521: Protein of u 62.5 4.9 0.00011 33.5 1.7 43 10-52 124-174 (206)
7 PF14795 Leucyl-specific: Leuc 32.9 17 0.00037 24.8 0.3 7 45-51 50-56 (56)
8 COG5557 Polysulphide reductase 26.4 50 0.0011 30.1 2.2 64 33-99 266-342 (401)
9 KOG1623 Multitransmembrane pro 23.3 59 0.0013 27.6 2.0 58 66-124 34-91 (243)
10 PF10290 DUF2403: Glycine-rich 22.7 43 0.00094 23.2 0.9 16 37-52 35-54 (65)
No 1
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=100.00 E-value=2.4e-54 Score=325.49 Aligned_cols=101 Identities=51% Similarity=0.957 Sum_probs=96.6
Q ss_pred HHHHHHHcCCCCCccceeccccccchhhhhcccCCCCCCcccccchhhHHHHhhhhhheeeeeeccchhhhhhhhhhhhh
Q 032596 31 ASVRAFWNSPVGPKTTHFWGPVANWGFVVAGLVDLKKPPEMISGNMTTAMCIYSGLFMRFAWMVQPRNYLLLACHASNET 110 (137)
Q Consensus 31 ~~~~~~~~~paGPkT~hFWgPv~kWgi~iA~i~D~~kppE~IS~~mt~aL~~yg~iw~Rys~vI~PrNy~L~ach~~n~~ 110 (137)
+.+|++|+||+||+|||||||++|||||||||+|++||||+||++||+|||+||+|||||||+|+||||+||+||++|++
T Consensus 4 ~~~~~~~~~~~gp~T~hFWaP~~kWgl~iA~i~D~~rppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny~L~a~n~~~~~ 83 (119)
T PF03650_consen 4 AKFRRFWNSPAGPKTTHFWAPVAKWGLPIAGIADMKRPPEKISGPQTSALCATGLIWMRYSLVITPRNYLLFACNFFNAT 83 (119)
T ss_pred HHHHHHHcCccccceEEeehhheeheeeeeehhhcCCCHHHHhHHHHHHHHHHHHHHHHHheeecCchHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccchhcc
Q 032596 111 VQLYHLSRWARSQGYLSEKKK 131 (137)
Q Consensus 111 ~q~~Ql~R~~~y~~~~~~~~~ 131 (137)
+|+||++|+++|++..+++++
T Consensus 84 ~q~~Ql~R~~~y~~~~~~~~~ 104 (119)
T PF03650_consen 84 TQLYQLYRKLNYQYSQKKEAK 104 (119)
T ss_pred HHHHHHHHHHHHHhhcCchhH
Confidence 999999999999998655443
No 2
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.7e-52 Score=314.14 Aligned_cols=106 Identities=35% Similarity=0.727 Sum_probs=99.0
Q ss_pred hcccchHHHHHHHcCCCCCccceeccccccchhhhhcccCCCCCCcccccchhhHHHHhhhhhheeeeeeccchhhhhhh
Q 032596 25 QKYLSMASVRAFWNSPVGPKTTHFWGPVANWGFVVAGLVDLKKPPEMISGNMTTAMCIYSGLFMRFAWMVQPRNYLLLAC 104 (137)
Q Consensus 25 ~~~~~~~~~~~~~~~paGPkT~hFWgPv~kWgi~iA~i~D~~kppE~IS~~mt~aL~~yg~iw~Rys~vI~PrNy~L~ac 104 (137)
|+++ +.+|++||||+||||+|||||++||||++|||+|++||||+||+.|+.||++||+||+|||++|+|+||+||+|
T Consensus 4 ~~~~--~k~r~~WnhpaGPKTVhFWAPt~KWglv~AglaD~arP~eklS~~q~~al~aTg~IWtRySlVI~PkN~~LfsV 81 (118)
T KOG1589|consen 4 DKFV--AKLRPLWNHPAGPKTVHFWAPTFKWGLVIAGLADLARPPEKLSYAQNAALTATGLIWTRYSLVITPKNYSLFSV 81 (118)
T ss_pred HHHH--HHHHHHhcCCCCCcEEEEecchhhhhheeecHHhhcCChHHcChhhhHHHHHhhhhheeeeEEEeccchhhhHH
Confidence 4554 78999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHhhccccchhcch
Q 032596 105 HASNETVQLYHLSRWARSQGYLSEKKKD 132 (137)
Q Consensus 105 h~~n~~~q~~Ql~R~~~y~~~~~~~~~~ 132 (137)
|+|++++|+|||.|+++|+..+...+.|
T Consensus 82 N~f~~~tg~~QL~Ri~~y~~~~~~~~~~ 109 (118)
T KOG1589|consen 82 NFFVAITGIYQLTRIANYQQQQKALEGE 109 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999998765444443
No 3
>KOG1590 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=7.3e-46 Score=282.35 Aligned_cols=100 Identities=60% Similarity=1.015 Sum_probs=89.1
Q ss_pred HHHHHcCCCCCc---cceeccccccchhhhhcccCCCCCCcccccchhhHHHHhhhhhheeeeeeccchhhhhhhhhhhh
Q 032596 33 VRAFWNSPVGPK---TTHFWGPVANWGFVVAGLVDLKKPPEMISGNMTTAMCIYSGLFMRFAWMVQPRNYLLLACHASNE 109 (137)
Q Consensus 33 ~~~~~~~paGPk---T~hFWgPv~kWgi~iA~i~D~~kppE~IS~~mt~aL~~yg~iw~Rys~vI~PrNy~L~ach~~n~ 109 (137)
+.++.++|-+++ |||||||++|||||||+|.||+|+||.|||+||+|||+||.+||||+|.|+||||+||+||++|+
T Consensus 11 ~~~~~~ske~r~Y~~sTHFWGPvaNwGlpiAal~DmkK~P~~ISG~MT~AL~~YS~vFMRfA~~VqPRN~LLfaCHa~N~ 90 (132)
T KOG1590|consen 11 FQDFLNSKEFRKYFMSTHFWGPVANWGLPIAALVDMKKSPEMISGRMTSALCLYSAVFMRFAWMVQPRNYLLFACHATNE 90 (132)
T ss_pred HHHHhcChHHhhhhhhcccccchhhccchHHHHHhccCChhhccccchHHHHHHHHHHHHHHHhcCcchhhHHHHhhhhH
Confidence 444555555554 69999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhccccchhcch
Q 032596 110 TVQLYHLSRWARSQGYLSEKKKD 132 (137)
Q Consensus 110 ~~q~~Ql~R~~~y~~~~~~~~~~ 132 (137)
++|++|++|+++|++...+++++
T Consensus 91 taQ~~Qg~Rf~~~~Y~~~~~e~~ 113 (132)
T KOG1590|consen 91 TAQLAQGSRFLNYNYGSTGEEKK 113 (132)
T ss_pred HHHHHHHHHHHHHHhcccchhhc
Confidence 99999999999999764444433
No 4
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=96.42 E-value=0.00057 Score=46.81 Aligned_cols=57 Identities=11% Similarity=0.111 Sum_probs=53.5
Q ss_pred CCCCcccccchhhHHHHhhhhhheeeeeeccchhhhhhhhhhhhhHHHHHHHHHHhhcc
Q 032596 66 KKPPEMISGNMTTAMCIYSGLFMRFAWMVQPRNYLLLACHASNETVQLYHLSRWARSQG 124 (137)
Q Consensus 66 ~kppE~IS~~mt~aL~~yg~iw~Rys~vI~PrNy~L~ach~~n~~~q~~Ql~R~~~y~~ 124 (137)
+|..|.+|..+..+..+-+.+|.+|++.+ +|+.++.+|++-...+.+|+.=++.|..
T Consensus 28 ~ks~~~~~~~~~~~~~~~~~~W~~YG~l~--~d~~i~~~N~~g~~~~~~~~~~~~~y~~ 84 (87)
T PF03083_consen 28 TKSTGSVSFPPFLAMFFNCVLWLIYGILI--NDWPIIVPNVFGLVLSIIYLVVYYIYPS 84 (87)
T ss_pred CCCCCccceehhHHHhhhccHhhhhhhhc--CCeeEEeeHHHHHHHHHHHHhheEEeCC
Confidence 79999999999999999999999999988 5999999999999999999998888775
No 5
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=89.71 E-value=0.18 Score=42.46 Aligned_cols=87 Identities=11% Similarity=0.137 Sum_probs=69.5
Q ss_pred HcCCCCCccceecc---ccccchhhhhcccCC-----CCCCcccccchhhHHHHhhhhhheeeeeeccchhhhhhhhhhh
Q 032596 37 WNSPVGPKTTHFWG---PVANWGFVVAGLVDL-----KKPPEMISGNMTTAMCIYSGLFMRFAWMVQPRNYLLLACHASN 108 (137)
Q Consensus 37 ~~~paGPkT~hFWg---Pv~kWgi~iA~i~D~-----~kppE~IS~~mt~aL~~yg~iw~Rys~vI~PrNy~L~ach~~n 108 (137)
...+..++.+|+=| -++|=..-.|++++| +|..|.+..+.+.|+.+.+..|.=|.+.+ +|..++.-|+.-
T Consensus 116 ~~~~~~~~~~~~lG~vc~~~nI~~~~sPL~~m~~VIktkSvE~mPf~Ls~a~fl~a~~W~lYGlli--~D~~IaipN~iG 193 (243)
T KOG1623|consen 116 LLFHDPERRVSVLGIVCAVFNISMFAAPLSVIRKVIKTKSVEYMPFPLSFALFLVAVQWLLYGLLI--KDFFIAIPNVLG 193 (243)
T ss_pred HhcCCcceeeeeeehhhhhhhHHhhhccHHhhhhheecCceeeechHHHHHHHHHHHHHHHHHHHh--cCeEEEcccHHH
Confidence 33444445455544 556666666777776 69999999999999999999999999988 899999999999
Q ss_pred hhHHHHHHHHHHhhccc
Q 032596 109 ETVQLYHLSRWARSQGY 125 (137)
Q Consensus 109 ~~~q~~Ql~R~~~y~~~ 125 (137)
...++.|+.=+.+|...
T Consensus 194 ~~l~~~QL~Ly~~y~~~ 210 (243)
T KOG1623|consen 194 FLLGLIQLILYFKYPKT 210 (243)
T ss_pred HHHHHHHHHHhhhcCCC
Confidence 99999999988766653
No 6
>PF15021 DUF4521: Protein of unknown function (DUF4521)
Probab=62.49 E-value=4.9 Score=33.53 Aligned_cols=43 Identities=26% Similarity=0.384 Sum_probs=30.8
Q ss_pred cccchhhhhhhhhhhhcccchHH-HHHHHcCCCC-------Cccceecccc
Q 032596 10 DCLNLKLQVLQSYQSQKYLSMAS-VRAFWNSPVG-------PKTTHFWGPV 52 (137)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~paG-------PkT~hFWgPv 52 (137)
.||.-||--|+.|++|||....- |.+..-.-.| |+.+||.-|-
T Consensus 124 qcLSqkI~EL~~qesqkYaLrsfQMArvi~nRDGcsvlq~h~~d~~Fypl~ 174 (206)
T PF15021_consen 124 QCLSQKISELRGQESQKYALRSFQMARVIFNRDGCSVLQRHSRDAHFYPLE 174 (206)
T ss_pred HHHHHHHHHHhcccchhHHHHHHhhHHhhcccccchhhhcCCCcccccchh
Confidence 59999999999999999986332 3333333233 5789998653
No 7
>PF14795 Leucyl-specific: Leucine-tRNA synthetase-specific domain; PDB: 1OBC_A 2BTE_A 2V0G_A 2BYT_A 1OBH_A 1H3N_A 2V0C_A.
Probab=32.93 E-value=17 Score=24.81 Aligned_cols=7 Identities=71% Similarity=1.659 Sum_probs=6.4
Q ss_pred cceeccc
Q 032596 45 TTHFWGP 51 (137)
Q Consensus 45 T~hFWgP 51 (137)
|+|||-|
T Consensus 50 ~~h~WKP 56 (56)
T PF14795_consen 50 TLHFWKP 56 (56)
T ss_dssp SEEEEEE
T ss_pred eEeecCC
Confidence 8999987
No 8
>COG5557 Polysulphide reductase [Energy production and conversion]
Probab=26.44 E-value=50 Score=30.10 Aligned_cols=64 Identities=17% Similarity=0.307 Sum_probs=47.8
Q ss_pred HHHHHcCCCCCccceeccccccchhhhhcccC---------CCCCCcccccchhhHHHHhhhhhheeeeeec----cchh
Q 032596 33 VRAFWNSPVGPKTTHFWGPVANWGFVVAGLVD---------LKKPPEMISGNMTTAMCIYSGLFMRFAWMVQ----PRNY 99 (137)
Q Consensus 33 ~~~~~~~paGPkT~hFWgPv~kWgi~iA~i~D---------~~kppE~IS~~mt~aL~~yg~iw~Rys~vI~----PrNy 99 (137)
.++-|.+-.+|-+.|||. ++=|.++++|.+= +.++-..| .+.+++.+.|..+-||-+.|. |.||
T Consensus 266 l~eala~vF~~~~g~Fls-v~Fwl~vl~g~a~pl~ll~~pk~~nd~r~l--~~a~~l~vf~~~~egwrl~i~gqv~~~n~ 342 (401)
T COG5557 266 LREALALVFLPTAGDFLS-VMFWLEVLLGMAFPLVLLRVPKLRNDSRML--FLAALLAVFGVFCEGWRLTISGQVVAFNY 342 (401)
T ss_pred HHHHHHHhhcccchhHHH-HHHHHHHHHhcccceEEEEccccccceeee--eHHHHHHHHHHHhhcEEEEeeeEEecccc
Confidence 455666777788999999 8889999997553 12332333 678899999999999888876 6665
No 9
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=23.27 E-value=59 Score=27.56 Aligned_cols=58 Identities=16% Similarity=0.146 Sum_probs=46.3
Q ss_pred CCCCcccccchhhHHHHhhhhhheeeeeeccchhhhhhhhhhhhhHHHHHHHHHHhhcc
Q 032596 66 KKPPEMISGNMTTAMCIYSGLFMRFAWMVQPRNYLLLACHASNETVQLYHLSRWARSQG 124 (137)
Q Consensus 66 ~kppE~IS~~mt~aL~~yg~iw~Rys~vI~PrNy~L~ach~~n~~~q~~Ql~R~~~y~~ 124 (137)
+|..|.+|+----.=.+.+++|+||.+...= .+++-.+|.+....+..=+.=++-|..
T Consensus 34 kkS~e~~s~~Pfl~~ll~~~lWl~YG~~~~~-d~llitIN~~G~~ie~~Yi~~f~~ya~ 91 (243)
T KOG1623|consen 34 KKSVEGFSSLPFLMGLLSCSLWLYYGLLKVH-DYLLITINGIGLVIETVYISIFLYYAP 91 (243)
T ss_pred ccCcCCCCCcCcHHHHHHHHHHHHhhhhccC-ceEEEEEehhcHHHHHHHHHHHheecC
Confidence 6888999876655556788999999965444 799999999999999887777776654
No 10
>PF10290 DUF2403: Glycine-rich protein domain (DUF2403); InterPro: IPR018807 This domain is found N-terminal to IPR018805 from INTERPRO. The function of this glycine-rich domain is unknown.
Probab=22.71 E-value=43 Score=23.23 Aligned_cols=16 Identities=38% Similarity=1.024 Sum_probs=12.7
Q ss_pred HcCCCCCc----cceecccc
Q 032596 37 WNSPVGPK----TTHFWGPV 52 (137)
Q Consensus 37 ~~~paGPk----T~hFWgPv 52 (137)
+..|.+|. |+||=||+
T Consensus 35 fsG~laPl~EelSvhFRGPl 54 (65)
T PF10290_consen 35 FSGPLAPLNEELSVHFRGPL 54 (65)
T ss_pred eeCCCCCCCCcEEEEEeCCc
Confidence 45677775 99999997
Done!