Query 032596
Match_columns 137
No_of_seqs 109 out of 403
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 05:03:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032596.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032596hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3azd_A Short alpha-tropomyosin 22.5 21 0.00073 21.0 0.3 18 5-22 2-19 (37)
2 3bbn_B Ribosomal protein S2; s 21.4 28 0.00096 27.8 0.9 33 43-75 158-199 (231)
3 3r8n_B 30S ribosomal protein S 18.8 35 0.0012 26.9 0.9 24 53-76 169-192 (218)
4 2vqe_B 30S ribosomal protein S 17.4 37 0.0013 27.5 0.8 33 43-75 159-200 (256)
5 1vi6_A 30S ribosomal protein S 15.9 43 0.0015 26.4 0.8 24 52-75 134-157 (208)
6 3a5p_A Haemagglutinin I; lecti 14.7 41 0.0014 24.0 0.3 23 26-48 30-52 (104)
7 2xzm_B RPS0E; ribosome, transl 13.8 55 0.0019 26.4 0.9 23 53-75 134-156 (241)
8 2sas_A Sarcoplasmic calcium-bi 12.9 1.1E+02 0.0037 20.2 2.1 30 23-52 151-184 (185)
9 3bch_A 40S ribosomal protein S 12.3 61 0.0021 26.4 0.8 24 52-75 170-193 (253)
10 3j20_B 30S ribosomal protein S 11.7 67 0.0023 25.1 0.8 22 54-75 132-153 (202)
No 1
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=22.46 E-value=21 Score=21.03 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=12.9
Q ss_pred ccccccccchhhhhhhhh
Q 032596 5 GVCSIDCLNLKLQVLQSY 22 (137)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~ 22 (137)
|.+++|-+.-|||.|+.+
T Consensus 2 g~~~i~avKkKiq~lq~q 19 (37)
T 3azd_A 2 GSSSLEAVRRKIRSLQEQ 19 (37)
T ss_dssp ----CHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHH
Confidence 678999999999999876
No 2
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=21.42 E-value=28 Score=27.75 Aligned_cols=33 Identities=15% Similarity=0.228 Sum_probs=26.9
Q ss_pred Cccceeccc---------cccchhhhhcccCCCCCCcccccc
Q 032596 43 PKTTHFWGP---------VANWGFVVAGLVDLKKPPEMISGN 75 (137)
Q Consensus 43 PkT~hFWgP---------v~kWgi~iA~i~D~~kppE~IS~~ 75 (137)
|.-+..=.| +.+=+||+.|+.|.+-||+.|+.+
T Consensus 158 Pdll~v~Dp~~e~~ai~EA~~l~IPvIaivDTn~dp~~Vdy~ 199 (231)
T 3bbn_B 158 PDIVIIVDQQEEYTALRECITLGIPTICLIDTNCNPDLADIS 199 (231)
T ss_dssp CSEEEESCTTTTHHHHHHHHTTTCCEEECCCSSSCCSSCSEE
T ss_pred CCEEEEeCCccccHHHHHHHHhCCCEEEEecCCCCccceeEE
Confidence 555666666 568999999999999999999765
No 3
>3r8n_B 30S ribosomal protein S2; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_B 3fih_B* 3j18_B* 2wwl_B 3oar_B 3oaq_B 3ofb_B 3ofa_B 3ofp_B 3ofx_B 3ofy_B 3ofo_B 3r8o_B 4a2i_B 4gd1_B 4gd2_B 3i1m_B 1vs7_B* 3e1a_B 3e1c_B ...
Probab=18.80 E-value=35 Score=26.90 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=20.5
Q ss_pred ccchhhhhcccCCCCCCcccccch
Q 032596 53 ANWGFVVAGLVDLKKPPEMISGNM 76 (137)
Q Consensus 53 ~kWgi~iA~i~D~~kppE~IS~~m 76 (137)
.+=+||+.|+.|.+-||+.|+.+-
T Consensus 169 ~~l~IP~IalvDTn~~p~~Vdy~I 192 (218)
T 3r8n_B 169 NNLGIPVFAIVDTNSDPDGVDFVI 192 (218)
T ss_dssp HHHTCCCEEECCSSSCCSSCSEEC
T ss_pred HHhCCCEEEEEeCcCCCcccceEe
Confidence 467899999999999999987643
No 4
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=17.39 E-value=37 Score=27.54 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=25.4
Q ss_pred Cccceecccc---------ccchhhhhcccCCCCCCcccccc
Q 032596 43 PKTTHFWGPV---------ANWGFVVAGLVDLKKPPEMISGN 75 (137)
Q Consensus 43 PkT~hFWgPv---------~kWgi~iA~i~D~~kppE~IS~~ 75 (137)
|.-+..=.|. .+=+||+.|+.|.+-||+.|+.+
T Consensus 159 Pdll~V~Dp~~e~~Ai~EA~~l~IPvIaivDTn~dp~~Vdyp 200 (256)
T 2vqe_B 159 PDAIFVVDPTKEAIAVREARKLFIPVIALADTDSDPDLVDYI 200 (256)
T ss_dssp CSEEEESCTTTTHHHHHHHHHTTCCCEECCCTTSCGGGCSEE
T ss_pred CCEEEEeCCccchHHHHHHHHcCCCEEEEecCCCCchhcceE
Confidence 4555555553 47899999999999999998754
No 5
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=15.88 E-value=43 Score=26.41 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=20.6
Q ss_pred cccchhhhhcccCCCCCCcccccc
Q 032596 52 VANWGFVVAGLVDLKKPPEMISGN 75 (137)
Q Consensus 52 v~kWgi~iA~i~D~~kppE~IS~~ 75 (137)
+.+=+||+.|+.|.+-||+.|+.+
T Consensus 134 A~~l~IPvIalvDTn~~p~~Vd~~ 157 (208)
T 1vi6_A 134 ATAVGIPVVALCDSNNSSADVDLV 157 (208)
T ss_dssp HHHTTCCEEEEECTTCCCTTCSEE
T ss_pred HHHhCCCEEEEeCCCCCccccCEE
Confidence 347899999999999999998654
No 6
>3a5p_A Haemagglutinin I; lectin, sugar binding protein; 1.82A {Physarum polycephalum}
Probab=14.66 E-value=41 Score=23.96 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=14.4
Q ss_pred cccchHHHHHHHcCCCCCcccee
Q 032596 26 KYLSMASVRAFWNSPVGPKTTHF 48 (137)
Q Consensus 26 ~~~~~~~~~~~~~~paGPkT~hF 48 (137)
.|+...-..+.--+..||||+|=
T Consensus 30 ryvtvtgyapitfseigpktvhq 52 (104)
T 3a5p_A 30 RYVTVTGYAPITFSEIGPKTVHQ 52 (104)
T ss_dssp EEEEETTBCCEEEECCSCCCSSS
T ss_pred cEEEEeeecceeehhcCCceeee
Confidence 34433334445567899999994
No 7
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=13.81 E-value=55 Score=26.36 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=20.0
Q ss_pred ccchhhhhcccCCCCCCcccccc
Q 032596 53 ANWGFVVAGLVDLKKPPEMISGN 75 (137)
Q Consensus 53 ~kWgi~iA~i~D~~kppE~IS~~ 75 (137)
.+=+||+.|+.|.+-||+.|+.+
T Consensus 134 ~~l~IPvIalvDTn~~p~~VDy~ 156 (241)
T 2xzm_B 134 SYVNIPVIALCDSDSPLAYVDVV 156 (241)
T ss_dssp TTTTCCEEECCCSSSCCTTCCEE
T ss_pred HHhCCCEEEEecCCCCcccccEE
Confidence 47899999999999999988654
No 8
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma lanceolatum} SCOP: a.39.1.5
Probab=12.88 E-value=1.1e+02 Score=20.24 Aligned_cols=30 Identities=10% Similarity=0.163 Sum_probs=20.1
Q ss_pred hhhcccchHH----HHHHHcCCCCCccceecccc
Q 032596 23 QSQKYLSMAS----VRAFWNSPVGPKTTHFWGPV 52 (137)
Q Consensus 23 ~~~~~~~~~~----~~~~~~~paGPkT~hFWgPv 52 (137)
..+..|+..+ ++.++.++......|+|||+
T Consensus 151 d~dG~i~~~ef~~~~~~~~~s~~~~~~~~~~g~~ 184 (185)
T 2sas_A 151 GGKVTFDLNRYKELYYRLLTSPAADAGNTLMGQK 184 (185)
T ss_dssp TTTSCCSHHHHHHHHHHHHHCSSCSGGGGGGTCC
T ss_pred CCCCcCcHHHHHHHHHHHhcCCCCCCcccccccC
Confidence 4566777555 55777776633468899996
No 9
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=12.33 E-value=61 Score=26.38 Aligned_cols=24 Identities=8% Similarity=0.104 Sum_probs=20.6
Q ss_pred cccchhhhhcccCCCCCCcccccc
Q 032596 52 VANWGFVVAGLVDLKKPPEMISGN 75 (137)
Q Consensus 52 v~kWgi~iA~i~D~~kppE~IS~~ 75 (137)
+.+=+||+.||.|.+-||+.|+.+
T Consensus 170 A~~lgIPvIalvDTn~dp~~VDy~ 193 (253)
T 3bch_A 170 ASYVNLPTIALCNTDSPLRYVDIA 193 (253)
T ss_dssp HHHTTCCEEEEECTTCCCTTCSEE
T ss_pred HHHhCCCEEEEEcCCCCcccCceE
Confidence 348899999999999999988643
No 10
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=11.73 E-value=67 Score=25.15 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=18.8
Q ss_pred cchhhhhcccCCCCCCcccccc
Q 032596 54 NWGFVVAGLVDLKKPPEMISGN 75 (137)
Q Consensus 54 kWgi~iA~i~D~~kppE~IS~~ 75 (137)
+=+||+.|+.|.+-||+.|+.+
T Consensus 132 ~l~IP~Ial~DTn~~p~~Vd~~ 153 (202)
T 3j20_B 132 EIGIPIVALVDTENLLSYVDLA 153 (202)
T ss_dssp HHTCCEEEEECTTCCCTTCCEE
T ss_pred HcCCCEEEEEcCCCCccccCEE
Confidence 5578999999999999988754
Done!