BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032597
(137 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FJW4|NDUS4_ARATH NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Arabidopsis thaliana GN=FRO1 PE=2 SV=1
Length = 154
Score = 191 bits (485), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 92/129 (71%), Positives = 109/129 (84%), Gaps = 4/129 (3%)
Query: 13 RTVR--GTVCPFSRAFSADALVE--VKPGEIGMVSGIPEEHLRRRVVIYTPARTATQQGS 68
RT+R T+ +R F+ DA+VE K GEIG VSGIPEEHL R+V+IY+PARTATQ GS
Sbjct: 9 RTIRIAATLRRVARPFATDAVVESDYKRGEIGKVSGIPEEHLSRKVIIYSPARTATQSGS 68
Query: 69 GKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVR 128
GKLG+WKINF+ST KWENPLMGWTSTGDPYANVGD+ L+FDS+EAA+ FAERHGW+Y V+
Sbjct: 69 GKLGKWKINFVSTLKWENPLMGWTSTGDPYANVGDSALAFDSEEAAKSFAERHGWDYKVK 128
Query: 129 KPHRPLLKV 137
KP+ PLLKV
Sbjct: 129 KPNTPLLKV 137
>sp|Q5XIF3|NDUS4_RAT NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Rattus norvegicus GN=Ndufs4 PE=1 SV=1
Length = 175
Score = 95.5 bits (236), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 71/114 (62%), Gaps = 11/114 (9%)
Query: 23 SRAFSADALVEVKPGEIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMST 81
++ + D ++V P ++G+PEEH++ R+V I+ PAR Q G +WK+ F +
Sbjct: 50 TQLITVDEKLDVTP-----LTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTR 104
Query: 82 QKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVV--RKPHRP 133
++WENPLMGW ST DP +N+ L+F +KE A FAE+HGW Y V RK +P
Sbjct: 105 ERWENPLMGWASTADPLSNM---VLTFSAKEDAVAFAEKHGWSYDVEGRKVPKP 155
>sp|O43181|NDUS4_HUMAN NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Homo sapiens GN=NDUFS4 PE=1 SV=1
Length = 175
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 63/97 (64%), Gaps = 4/97 (4%)
Query: 38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
+I ++G+PEEH++ R+V I+ PAR Q G +WK+ F + ++WENPLMGW ST D
Sbjct: 60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119
Query: 97 PYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRP 133
P +N+ L+F +KE A FAE++GW Y + + P
Sbjct: 120 PLSNM---VLTFSTKEDAVSFAEKNGWSYDIEERKVP 153
>sp|Q0MQH0|NDUS4_GORGO NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Gorilla gorilla gorilla GN=NDUFS4 PE=2
SV=1
Length = 175
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 63/97 (64%), Gaps = 4/97 (4%)
Query: 38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
+I ++G+PEEH++ R+V I+ PAR Q G +WK+ F + ++WENPLMGW ST D
Sbjct: 60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119
Query: 97 PYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRP 133
P +N+ L+F +KE A FAE++GW Y + + P
Sbjct: 120 PLSNM---VLTFSTKEDAVSFAEKNGWSYDIEERKVP 153
>sp|P0CB96|NDUS4_PONPY NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Pongo pygmaeus GN=NDUFS4 PE=2 SV=1
Length = 175
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 63/97 (64%), Gaps = 4/97 (4%)
Query: 38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
+I ++G+PEEH++ R+V I+ PAR Q G +WK+ F + ++WENPLMGW ST D
Sbjct: 60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119
Query: 97 PYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRP 133
P +N+ L+F +KE A FAE++GW Y V + P
Sbjct: 120 PLSNM---VLTFRTKEDAVSFAEKNGWSYDVEERKVP 153
>sp|P0CB95|NDUS4_PONAB NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Pongo abelii GN=NDUFS4 PE=2 SV=1
Length = 175
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 63/97 (64%), Gaps = 4/97 (4%)
Query: 38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
+I ++G+PEEH++ R+V I+ PAR Q G +WK+ F + ++WENPLMGW ST D
Sbjct: 60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119
Query: 97 PYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRP 133
P +N+ L+F +KE A FAE++GW Y V + P
Sbjct: 120 PLSNM---VLTFRTKEDAVSFAEKNGWSYDVEERKVP 153
>sp|Q66XS7|NDUS4_GECJA NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Gecko japonicus GN=NDUFS4 PE=2 SV=1
Length = 175
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 64/97 (65%), Gaps = 4/97 (4%)
Query: 38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
+I ++G+PEEH++ R+V I+ PAR Q G +WK+ F + ++WENPLMGW+ST D
Sbjct: 60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWSSTAD 119
Query: 97 PYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRP 133
P +N+ L+F +KE A FAE++GW + V + P
Sbjct: 120 PLSNL---VLTFSTKEDAVAFAEKNGWSFDVEERKVP 153
>sp|Q02375|NDUS4_BOVIN NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Bos taurus GN=NDUFS4 PE=1 SV=1
Length = 175
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 62/97 (63%), Gaps = 4/97 (4%)
Query: 38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
+I ++G+PEEH++ R+ I+ PAR Q G +WK+ F + ++WENPLMGW ST D
Sbjct: 60 DITTITGVPEEHIKTRKARIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119
Query: 97 PYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRP 133
P +N+ L+F +KE A FAE++GW Y V + P
Sbjct: 120 PLSNL---VLTFSTKEDAVAFAEKNGWSYDVEERKVP 153
>sp|Q9CXZ1|NDUS4_MOUSE NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Mus musculus GN=Ndufs4 PE=1 SV=3
Length = 175
Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 61/91 (67%), Gaps = 4/91 (4%)
Query: 38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
+I ++G+PEEH++ R+V I+ PAR Q G +WK+ F + ++WENPLMGW ST D
Sbjct: 60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119
Query: 97 PYANVGDAGLSFDSKEAAREFAERHGWEYVV 127
P +N+ L+F +KE A FAE++GW Y V
Sbjct: 120 PLSNM---VLTFSAKEDAIAFAEKNGWSYDV 147
>sp|Q0MQH1|NDUS4_PANTR NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Pan troglodytes GN=NDUFS4 PE=2 SV=1
Length = 175
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 62/97 (63%), Gaps = 4/97 (4%)
Query: 38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
+I ++G+PEEH++ R+V I+ PAR Q G +WK+ F + ++WENPLMGW ST D
Sbjct: 60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119
Query: 97 PYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRP 133
P +N+ L+ +KE A FAE++GW Y + + P
Sbjct: 120 PLSNM---VLTXSTKEDAVSFAEKNGWSYDIEERKVP 153
>sp|P25711|NDUS4_NEUCR NADH-ubiquinone oxidoreductase 21 kDa subunit, mitochondrial
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=nuo-21 PE=1 SV=2
Length = 218
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 60/96 (62%), Gaps = 7/96 (7%)
Query: 40 GMVSGIPEEHLRRRVVIYTPARTATQQGSGKLGRWKINFMSTQK---WENPLMGWTSTGD 96
+VSG P E R V IY P++ ATQ + ++ W++++ +K WEN LMGW S+GD
Sbjct: 102 AVVSGAPMELQARTVRIYLPSKPATQSSNSRV-LWRMDWDVLEKGHRWENELMGWQSSGD 160
Query: 97 PYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHR 132
V L+F +KE A +FAE+ G+EY V++P++
Sbjct: 161 ---FVQGTHLTFRTKEEAIQFAEKQGYEYFVQEPNQ 193
>sp|P80268|NUO2_SOLTU NADH-ubiquinone oxidoreductase 18 kDa subunit (Fragment)
OS=Solanum tuberosum PE=1 SV=2
Length = 30
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/30 (80%), Positives = 29/30 (96%)
Query: 27 SADALVEVKPGEIGMVSGIPEEHLRRRVVI 56
+++ALVE+KPGEIGMVSGIP+EHLRR VVI
Sbjct: 1 ASEALVEIKPGEIGMVSGIPDEHLRRFVVI 30
>sp|Q8T1V6|NDUS4_DICDI NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Dictyostelium discoideum GN=ndufs4 PE=3
SV=2
Length = 190
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 52 RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSK 111
+ V IY P+R Q G+ + +W I KW + LMGW ++ D + L F+S+
Sbjct: 84 KSVNIYRPSRNTMQTGTLRTKKWVIELPFNPKWNDRLMGWWASKDT---LNQLNLRFNSE 140
Query: 112 EAAREFAERHGWEYVV 127
A + + G Y +
Sbjct: 141 TDAVAYCKEIGLNYNI 156
>sp|Q1B3G6|SERC_MYCSS Putative phosphoserine aminotransferase OS=Mycobacterium sp.
(strain MCS) GN=serC PE=3 SV=1
Length = 370
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 26/108 (24%)
Query: 9 WSHGRTVRGTVCPFSR-AFSADALVEVK--------PGEIGMVSGI---PEEHLRRR--- 53
W+H T G P R A S DAL+ + P +I P+++
Sbjct: 143 WAHNETSTGVAVPVQRPADSGDALIVIDATSGAGGLPVDIAQADAYYFAPQKNFAGDGGL 202
Query: 54 -VVIYTPARTATQQGSGKLGRWKINFMS----------TQKWENPLMG 90
+ + +PA A + G+ GRW +F+S Q + P +G
Sbjct: 203 WLAVVSPAALARIEAIGQSGRWVPDFLSLPIAVENSLKNQTYNTPAIG 250
>sp|A1ULN4|SERC_MYCSK Putative phosphoserine aminotransferase OS=Mycobacterium sp.
(strain KMS) GN=serC PE=3 SV=1
Length = 370
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 26/108 (24%)
Query: 9 WSHGRTVRGTVCPFSR-AFSADALVEVK--------PGEIGMVSGI---PEEHLRRR--- 53
W+H T G P R A S DAL+ + P +I P+++
Sbjct: 143 WAHNETSTGVAVPVQRPADSGDALIVIDATSGAGGLPVDIAQADAYYFAPQKNFAGDGGL 202
Query: 54 -VVIYTPARTATQQGSGKLGRWKINFMS----------TQKWENPLMG 90
+ + +PA A + G+ GRW +F+S Q + P +G
Sbjct: 203 WLAVVSPAALARIEAIGQSGRWVPDFLSLPIAVENSLKNQTYNTPAIG 250
>sp|A3Q635|SERC_MYCSJ Putative phosphoserine aminotransferase OS=Mycobacterium sp.
(strain JLS) GN=serC PE=3 SV=1
Length = 370
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 26/108 (24%)
Query: 9 WSHGRTVRGTVCPFSR-AFSADALVEVK--------PGEIGMVSGI---PEEHLRRR--- 53
W+H T G P R A S DAL+ + P +I P+++
Sbjct: 143 WAHNETSTGVAVPVQRPADSGDALIVIDATSGAGGLPVDIAQADAYYFAPQKNFAGDGGL 202
Query: 54 -VVIYTPARTATQQGSGKLGRWKINFMS----------TQKWENPLMG 90
+ + +PA A + G+ GRW +F+S Q + P +G
Sbjct: 203 WLAVVSPAALARIEAIGQSGRWVPDFLSLPIAVENSLKNQTYNTPAIG 250
>sp|Q3JAW7|HEMH_NITOC Ferrochelatase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB
11848) GN=hemH PE=3 SV=1
Length = 368
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Query: 60 ARTATQQGSGKLGRWKINFMST---QKWENP-----LMGWTSTGDPYANVGDAGLSFDSK 111
AR ++ K G W+I F S ++W P L W G +V G + D
Sbjct: 230 ARLLAERLGLKEGEWQIAFQSRFGREEWLKPYADHLLQAWAEAGIKRVDVVCPGFAVDCL 289
Query: 112 EAAREFAERH 121
E E A+R+
Sbjct: 290 ETLEEMAQRN 299
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,471,512
Number of Sequences: 539616
Number of extensions: 2066445
Number of successful extensions: 4017
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 3984
Number of HSP's gapped (non-prelim): 20
length of query: 137
length of database: 191,569,459
effective HSP length: 102
effective length of query: 35
effective length of database: 136,528,627
effective search space: 4778501945
effective search space used: 4778501945
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)