Query 032597
Match_columns 137
No_of_seqs 151 out of 366
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 05:04:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032597.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032597hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lju_A Putative oxidoreductase 100.0 3.1E-46 1.1E-50 274.8 11.8 92 40-137 3-95 (108)
2 2jya_A AGR_C_3324P, uncharacte 100.0 2.4E-45 8.4E-50 269.3 8.5 84 51-137 3-87 (106)
3 4b0z_A RPN12, 26S proteasome r 87.4 0.24 8.3E-06 38.7 2.0 22 105-126 199-220 (229)
4 3t5v_A Nuclear mRNA export pro 82.5 0.61 2.1E-05 38.6 2.3 22 105-126 233-254 (316)
5 4b4t_T 26S proteasome regulato 81.6 0.53 1.8E-05 38.1 1.6 21 105-125 208-228 (274)
6 1ng7_A Poliovirus 3A-N, genome 75.2 1.3 4.4E-05 29.2 1.7 14 112-125 32-45 (60)
7 2hpu_A NOSL protein; alpha bet 74.1 3.3 0.00011 31.6 4.0 50 72-123 70-132 (175)
8 3bsu_A Ribonuclease H1, RNAse 50.7 9.4 0.00032 23.8 2.2 16 105-120 35-50 (53)
9 1qhk_A RNAse HI, protein (ribo 49.2 7.3 0.00025 23.7 1.4 14 105-118 33-46 (47)
10 3jtn_A YPBH, adapter protein M 47.8 13 0.00044 25.0 2.7 17 105-121 4-20 (91)
11 3jtp_A Adapter protein MECA 1; 46.2 14 0.00049 25.2 2.7 18 105-123 10-27 (98)
12 2fiu_A Conserved hypothetical 43.5 17 0.00056 24.8 2.7 15 105-119 58-72 (99)
13 2gjf_A Designed protein; proca 43.5 29 0.00099 22.0 3.8 25 105-129 52-76 (78)
14 4dgh_A Sulfate permease family 41.4 13 0.00045 25.3 2.0 15 107-121 111-125 (130)
15 3lo3_A Uncharacterized conserv 41.1 20 0.00068 24.1 2.8 15 105-119 57-71 (94)
16 3syx_A Sprouty-related, EVH1 d 41.0 15 0.00052 27.1 2.3 44 71-120 66-114 (130)
17 1qc6_A EVH1 domain from ENA/VA 40.1 18 0.00061 25.9 2.6 17 105-121 89-105 (130)
18 2hw0_A Replicase; alpha+beta, 38.9 34 0.0012 24.3 3.9 24 109-132 87-111 (115)
19 1xod_A Spred1; sprouty, EVH1, 37.0 21 0.00072 25.4 2.5 17 105-121 92-108 (118)
20 1vjq_A Designed protein; struc 37.0 37 0.0013 21.5 3.5 26 105-130 44-69 (79)
21 4fle_A Esterase; structural ge 36.8 9.9 0.00034 26.5 0.7 35 88-133 8-42 (202)
22 3hh1_A Tetrapyrrole methylase 36.4 26 0.0009 23.9 2.9 32 90-129 83-115 (117)
23 4g2e_A Peroxiredoxin; redox pr 35.0 28 0.00097 24.2 2.9 25 105-129 69-93 (157)
24 1egx_A VAsp, vasodilator-stimu 34.8 28 0.00096 24.5 2.9 17 105-121 90-106 (115)
25 1evh_A WH1 domain, protein (ME 34.7 28 0.00097 24.4 2.8 17 105-121 88-104 (112)
26 2jp2_A Spred-2, sprouty-relate 34.4 28 0.00097 25.1 2.9 17 105-121 101-117 (126)
27 2kln_A Probable sulphate-trans 34.0 16 0.00054 24.9 1.4 16 106-121 109-124 (130)
28 3pxi_a Adapter protein MECA 1; 33.4 21 0.00071 25.1 1.9 18 105-123 23-40 (111)
29 3p3d_A Nucleoporin 53; structu 33.3 20 0.00068 26.6 1.9 21 105-125 66-86 (132)
30 1snn_A DHBP synthase, 3,4-dihy 31.9 26 0.00089 28.1 2.5 18 109-126 194-211 (227)
31 1ddw_A GLGF-domain protein hom 31.4 27 0.00093 24.9 2.3 46 71-120 52-102 (120)
32 3drn_A Peroxiredoxin, bacterio 31.2 36 0.0012 23.3 2.9 26 105-130 68-93 (161)
33 2p6w_A VP54, putative glycosyl 31.0 21 0.00073 28.5 1.8 21 109-129 24-44 (213)
34 3ewt_E Tumor necrosis factor r 30.8 28 0.00097 19.0 1.8 14 110-123 12-25 (25)
35 4dgf_A Sulfate transporter sul 30.8 23 0.00078 24.4 1.8 15 107-121 114-128 (135)
36 2qbu_A Precorrin-2 methyltrans 30.6 42 0.0014 24.9 3.4 33 89-129 97-129 (232)
37 2ebb_A Pterin-4-alpha-carbinol 30.0 32 0.0011 23.7 2.4 31 86-120 13-44 (101)
38 1xvw_A Hypothetical protein RV 29.9 28 0.00096 23.5 2.1 26 105-130 75-100 (160)
39 3e21_A HFAF1, FAS-associated f 29.8 20 0.00067 21.8 1.1 18 109-126 19-36 (45)
40 2a4v_A Peroxiredoxin DOT5; yea 29.5 37 0.0013 23.1 2.7 26 105-130 73-98 (159)
41 2yzh_A Probable thiol peroxida 29.0 41 0.0014 23.2 2.9 26 105-130 84-110 (171)
42 1psq_A Probable thiol peroxida 28.9 38 0.0013 23.3 2.7 26 105-130 79-105 (163)
43 3gkn_A Bacterioferritin comigr 28.8 30 0.001 23.4 2.2 25 105-129 74-98 (163)
44 3llo_A Prestin; STAS domain, c 28.5 15 0.00051 25.3 0.5 16 106-121 126-141 (143)
45 1usm_A DCOH, hepatocyte nuclea 27.6 37 0.0013 22.3 2.3 30 89-120 1-30 (80)
46 2zib_A Type II antifreeze prot 27.1 35 0.0012 23.0 2.2 37 85-124 8-44 (133)
47 4gqc_A Thiol peroxidase, perox 27.1 45 0.0016 23.4 2.9 25 105-129 72-96 (164)
48 2e0n_A Precorrin-2 C20-methylt 27.1 46 0.0016 25.5 3.1 33 89-129 99-131 (259)
49 1gqe_A Release factor 2, RF2; 26.9 28 0.00097 29.6 2.0 16 115-130 153-168 (365)
50 1mwq_A Hypothetical protein HI 26.7 33 0.0011 22.6 2.0 25 105-129 65-96 (101)
51 1mwp_A Amyloid A4 protein; hep 26.6 34 0.0012 24.1 2.1 23 105-127 33-55 (96)
52 2cqy_A Propionyl-COA carboxyla 26.5 57 0.0019 20.6 3.1 25 107-131 30-54 (108)
53 1tp9_A Peroxiredoxin, PRX D (t 26.3 52 0.0018 22.8 3.0 25 105-129 76-102 (162)
54 3ndc_A Precorrin-4 C(11)-methy 25.8 51 0.0018 25.6 3.2 33 89-129 79-111 (264)
55 3tbi_A RNA polymerase-associat 25.6 29 0.00099 25.3 1.6 15 111-125 59-73 (115)
56 2hiq_A Hypothetical protein YD 25.5 30 0.001 25.0 1.7 29 91-121 48-76 (113)
57 3mio_A DHBP synthase, 3,4-dihy 24.7 41 0.0014 26.5 2.4 18 109-126 176-193 (206)
58 2wfc_A Peroxiredoxin 5, PRDX5; 24.6 53 0.0018 23.3 2.9 25 105-129 72-98 (167)
59 1i2h_A PSD-ZIP45(homer-1C/VESL 24.4 44 0.0015 25.5 2.5 46 71-120 57-107 (168)
60 3jst_A Putative pterin-4-alpha 24.4 55 0.0019 22.2 2.8 31 86-120 16-48 (97)
61 3raz_A Thioredoxin-related pro 24.2 49 0.0017 22.0 2.5 24 105-128 62-85 (151)
62 1uas_A Alpha-galactosidase; TI 24.2 16 0.00053 29.8 -0.1 40 85-129 7-51 (362)
63 3d5a_X RF1, peptide chain rele 24.2 32 0.0011 29.2 1.8 16 115-130 132-147 (354)
64 2ek1_A RNA-binding protein 12; 24.1 67 0.0023 19.9 3.0 21 105-125 61-82 (95)
65 2z6r_A Diphthine synthase; met 24.1 48 0.0017 25.4 2.7 33 89-129 80-112 (265)
66 2ihr_1 Peptide chain release f 23.9 31 0.0011 29.4 1.7 16 115-130 141-156 (365)
67 1zbt_A RF-1, peptide chain rel 23.9 33 0.0011 29.4 1.8 16 115-130 150-165 (371)
68 2jpc_A SSRB; DNA binding prote 23.5 26 0.0009 20.4 0.9 19 105-123 40-58 (61)
69 3p7x_A Probable thiol peroxida 23.5 58 0.002 22.4 2.8 25 105-129 82-107 (166)
70 1rq0_A RF-1, peptide chain rel 22.9 35 0.0012 28.9 1.8 16 115-130 113-128 (342)
71 1va0_A Uroporphyrin-III C-meth 22.4 73 0.0025 23.9 3.4 32 90-129 79-110 (239)
72 4a56_A PULS, pullulanase secre 22.2 37 0.0013 23.7 1.6 13 113-125 38-50 (93)
73 4a8x_A RNA-binding protein wit 22.2 78 0.0027 19.1 3.0 20 105-124 51-71 (88)
74 4e16_A Precorrin-4 C(11)-methy 22.0 58 0.002 25.0 2.8 33 89-129 80-112 (253)
75 3dhx_A Methionine import ATP-b 21.8 64 0.0022 21.8 2.7 24 105-128 68-95 (106)
76 3ro8_A Endo-1,4-beta-xylanase; 21.8 53 0.0018 27.1 2.7 22 105-126 58-79 (341)
77 1tks_A 3,4-dihydroxy-2-butanon 21.6 50 0.0017 26.0 2.4 18 109-126 176-193 (204)
78 2nz2_A Argininosuccinate synth 21.6 26 0.00089 29.7 0.8 21 107-127 154-174 (413)
79 2b3t_B RF-1, peptide chain rel 21.6 30 0.001 29.4 1.2 15 115-129 136-150 (360)
80 3sol_A Type II secretion pathw 21.3 43 0.0015 23.4 1.8 13 113-125 38-50 (94)
81 1k4i_A 3,4-dihydroxy-2-butanon 21.2 51 0.0017 26.5 2.4 19 108-126 193-211 (233)
82 1s4d_A Uroporphyrin-III C-meth 21.2 64 0.0022 25.2 2.9 33 89-129 95-127 (280)
83 2v6u_A Pterin-4A-carbinolamine 20.9 59 0.002 22.4 2.4 33 86-120 19-51 (104)
84 3ulh_A THO complex subunit 4; 20.6 84 0.0029 20.0 3.0 21 105-125 74-95 (107)
85 3md1_A Nuclear and cytoplasmic 20.4 93 0.0032 18.6 3.1 20 105-124 47-67 (83)
86 1ve2_A Uroporphyrin-III C-meth 20.4 80 0.0027 23.6 3.2 32 90-129 82-113 (235)
87 3kzf_A Carbamate kinase; argin 20.2 23 0.00079 29.5 0.2 19 107-125 136-155 (317)
No 1
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=100.00 E-value=3.1e-46 Score=274.81 Aligned_cols=92 Identities=32% Similarity=0.566 Sum_probs=84.4
Q ss_pred ccccCCCcccccceEEEecCCCCCCCCCCCCCCCcEEEccCC-CCccCCCcCccCCCCccCccCCceeeeCCHHHHHHHH
Q 032597 40 GMVSGIPEEHLRRRVVIYTPARTATQQGSGKLGRWKINFMST-QKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFA 118 (137)
Q Consensus 40 ~~vSG~P~e~~~R~vrIY~Pak~amQSG~~~~~~W~LeFe~~-~rw~nPLMGWtsS~D~~sqv~~~~L~F~SkE~AIaya 118 (137)
|...|.|+. ++||||+|+|+|||||++++++|+|||++. ++|+|||||||||+||++|| +|+|+|+|+||+||
T Consensus 3 ~~~~~~~~~---~~arIy~Pak~amQSG~~~t~~W~lefe~~~~r~~nPLMGWtsS~D~~~qv---~L~F~skE~AiayA 76 (108)
T 2lju_A 3 GSMQEQVSN---VRARIYKPAKSTMQSGHSKLKAWKLEFEPSCTQYTEPLMNWTGSHDTKQQV---CLSFTTRELAIAYA 76 (108)
T ss_dssp --CCCCCCC---CEEEEECCCCCCSSSSCCSCCCEEEEECCCSSCCCCCCCCCSSSCCCCCCS---CEEESSHHHHHHHH
T ss_pred cccCCCCCC---CEEEEeCCCCCccccCCCCCCceEEEEecCCCCccCCCccccCCCCccccc---eEecCCHHHHHHHH
Confidence 345666665 899999999999999999999999999996 69999999999999999999 99999999999999
Q ss_pred HHcCCcEEEeCCCCCCCCC
Q 032597 119 ERHGWEYVVRKPHRPLLKV 137 (137)
Q Consensus 119 ek~Gw~Y~V~~P~~~~~~~ 137 (137)
|||||+|+|++|+.+++++
T Consensus 77 ek~G~~y~V~ep~~~~~r~ 95 (108)
T 2lju_A 77 VAHKIDYTVLQDNPRTIVP 95 (108)
T ss_dssp HHTTCEEEEECSSCCCCCC
T ss_pred HHcCCEEEEecCCcccCCc
Confidence 9999999999999988764
No 2
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=100.00 E-value=2.4e-45 Score=269.32 Aligned_cols=84 Identities=37% Similarity=0.620 Sum_probs=77.2
Q ss_pred cceEEEecCCCCCCCCCCCCCCCcEEEccCC-CCccCCCcCccCCCCccCccCCceeeeCCHHHHHHHHHHcCCcEEEeC
Q 032597 51 RRRVVIYTPARTATQQGSGKLGRWKINFMST-QKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVRK 129 (137)
Q Consensus 51 ~R~vrIY~Pak~amQSG~~~~~~W~LeFe~~-~rw~nPLMGWtsS~D~~sqv~~~~L~F~SkE~AIayaek~Gw~Y~V~~ 129 (137)
.++||||+|+|+|||||++++++|+||||+. ++|+|||||||||+||++|| +|+|+|+|+||+|||||||+|+|++
T Consensus 3 ~m~arIy~Pak~amQSG~~~t~~W~lefe~~~~rw~nPLMGWtsS~D~~~qv---~L~F~skE~AiayAek~G~~y~V~e 79 (106)
T 2jya_A 3 HMSAKIYRPAKTAMQSGTAKTNVWVLEFDAEVPRKIDPIMGYTSSSDMKQQV---KLTFETQEQAEAYAQRKGIEYRVIL 79 (106)
T ss_dssp -CEEEEECCSSCCCTTTTCCSCCEEEEEEEECCSCCCTTTCSCSCCCSEEEE---EEEESSHHHHHHHHHHHTCEEEECC
T ss_pred CcEEEEeCCCCCccccCCCCCCceEEEEecCCCCccCCCcCcCCCCCccccc---eEecCCHHHHHHHHHHcCCEEEEeC
Confidence 4789999999999999999999999999985 79999999999999999999 9999999999999999999999999
Q ss_pred CCCCCCCC
Q 032597 130 PHRPLLKV 137 (137)
Q Consensus 130 P~~~~~~~ 137 (137)
|+.+++++
T Consensus 80 p~~~~~r~ 87 (106)
T 2jya_A 80 PKEATRKV 87 (106)
T ss_dssp CTTC----
T ss_pred CCcCcCCc
Confidence 99988764
No 3
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=87.43 E-value=0.24 Score=38.74 Aligned_cols=22 Identities=23% Similarity=0.555 Sum_probs=19.9
Q ss_pred eeeeCCHHHHHHHHHHcCCcEE
Q 032597 105 GLSFDSKEAAREFAERHGWEYV 126 (137)
Q Consensus 105 ~L~F~SkE~AIayaek~Gw~Y~ 126 (137)
.|.|+|.|+++.||+++||...
T Consensus 199 ~L~f~s~~e~~~f~~~~gw~i~ 220 (229)
T 4b0z_A 199 LLYLENTKETEKLAEERGWDIR 220 (229)
T ss_dssp HTTCSSHHHHHHHHHHHTCEEE
T ss_pred HhCCCCHHHHHHHHHHcCCEEe
Confidence 5899999999999999999763
No 4
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=82.47 E-value=0.61 Score=38.65 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=20.6
Q ss_pred eeeeCCHHHHHHHHHHcCCcEE
Q 032597 105 GLSFDSKEAAREFAERHGWEYV 126 (137)
Q Consensus 105 ~L~F~SkE~AIayaek~Gw~Y~ 126 (137)
.|.|+|.|++++||+.+||.+.
T Consensus 233 ~L~Fds~ee~~~F~~~~gl~~~ 254 (316)
T 3t5v_A 233 MLLFNNRQEIIEFCNYYSIEII 254 (316)
T ss_dssp HTTCSSHHHHHHHHHHTTCCEE
T ss_pred HhCCCCHHHHHHHHHHCCCeEe
Confidence 4889999999999999999996
No 5
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.63 E-value=0.53 Score=38.06 Aligned_cols=21 Identities=24% Similarity=0.517 Sum_probs=19.3
Q ss_pred eeeeCCHHHHHHHHHHcCCcE
Q 032597 105 GLSFDSKEAAREFAERHGWEY 125 (137)
Q Consensus 105 ~L~F~SkE~AIayaek~Gw~Y 125 (137)
.|.|+|.+++++||+++||..
T Consensus 208 ~L~F~s~~e~~~F~~~~gW~~ 228 (274)
T 4b4t_T 208 LLFFNNEKETEKFALERNWPI 228 (274)
T ss_dssp HHTCCSHHHHHHHHHHTTCCC
T ss_pred HhCCCCHHHHHHHHHHcCCEE
Confidence 488999999999999999974
No 6
>1ng7_A Poliovirus 3A-N, genome polyprotein [core protein P3A]; helical hairpin, unfolded domain, symmetric dimer, viral protein; NMR {Human poliovirus 1} SCOP: a.178.1.1
Probab=75.21 E-value=1.3 Score=29.16 Aligned_cols=14 Identities=29% Similarity=0.921 Sum_probs=12.6
Q ss_pred HHHHHHHHHcCCcE
Q 032597 112 EAAREFAERHGWEY 125 (137)
Q Consensus 112 E~AIayaek~Gw~Y 125 (137)
|+-+.||+++||-.
T Consensus 32 ~eV~~YC~~kGwIi 45 (60)
T 1ng7_A 32 QEVRDYCEKKGWIV 45 (60)
T ss_dssp HHHHHHHHHHTCCC
T ss_pred HHHHHHHHHCCcee
Confidence 67899999999986
No 7
>2hpu_A NOSL protein; alpha beta topology, metal transport; NMR {Achromobacter cycloclastes} SCOP: d.357.1.1 PDB: 2hq3_A
Probab=74.06 E-value=3.3 Score=31.63 Aligned_cols=50 Identities=18% Similarity=0.362 Sum_probs=31.0
Q ss_pred CCcEEEccC-CCCccCCCcC-cc--------CCCC---ccCccCCceeeeCCHHHHHHHHHHcCC
Q 032597 72 GRWKINFMS-TQKWENPLMG-WT--------STGD---PYANVGDAGLSFDSKEAAREFAERHGW 123 (137)
Q Consensus 72 ~~W~LeFe~-~~rw~nPLMG-Wt--------sS~D---~~sqv~~~~L~F~SkE~AIayaek~Gw 123 (137)
.-|+-+|.. ...|+.|--+ |. -.+| ||.. ...+-|.++++|.+|+++||=
T Consensus 70 aiyV~D~~t~~~~w~~p~~~~wIdA~~A~YVvgS~~~gpMG~--~~l~pFa~k~dAe~Fa~~~GG 132 (175)
T 2hpu_A 70 VIYVNDMGAAGATWDQPGDGNWIAADKAFYVVGSARRGGMGA--PEAVPFSSRDEAAAFVLAEGG 132 (175)
T ss_dssp EEEEEESCTTSSCTTCSCCCEEECGGGSEEEEESSSSCSSSC--CCEEEESCHHHHHHHHHHTEE
T ss_pred EEEEEcCcccccccccCCCCceEECCeeEEEeCCCCCCCCCC--CcccCcCCHHHHHHHHHHcCC
Confidence 457888876 2445544221 32 1222 3331 236899999999999999983
No 8
>3bsu_A Ribonuclease H1, RNAse H1; RNAse H, RNA/DNA hybrid; HET: DNA 5IU; 2.10A {Homo sapiens}
Probab=50.72 E-value=9.4 Score=23.77 Aligned_cols=16 Identities=19% Similarity=0.333 Sum_probs=13.8
Q ss_pred eeeeCCHHHHHHHHHH
Q 032597 105 GLSFDSKEAAREFAER 120 (137)
Q Consensus 105 ~L~F~SkE~AIayaek 120 (137)
.-+|.|+|||.+|.+.
T Consensus 35 yK~F~t~~eA~~~l~~ 50 (53)
T 3bsu_A 35 FKKFATEDEAWAFVRK 50 (53)
T ss_dssp EEEESSHHHHHHHHHC
T ss_pred cCCCCCHHHHHHHHHh
Confidence 5579999999999864
No 9
>1qhk_A RNAse HI, protein (ribonuclease HI); ribonuclease HI N-terminal domain, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.100.1.2
Probab=49.23 E-value=7.3 Score=23.70 Aligned_cols=14 Identities=36% Similarity=0.425 Sum_probs=12.2
Q ss_pred eeeeCCHHHHHHHH
Q 032597 105 GLSFDSKEAAREFA 118 (137)
Q Consensus 105 ~L~F~SkE~AIaya 118 (137)
.=+|.|+|||.+|.
T Consensus 33 yK~F~t~~eA~~~l 46 (47)
T 1qhk_A 33 YKKFNSYEQAKSFL 46 (47)
T ss_dssp CEEESCHHHHHHHH
T ss_pred cCCCCCHHHHHHHh
Confidence 45899999999985
No 10
>3jtn_A YPBH, adapter protein MECA 2; adaptor protein, competence, sporulation, protein binding; 2.09A {Bacillus subtilis} PDB: 3jto_A
Probab=47.81 E-value=13 Score=24.97 Aligned_cols=17 Identities=24% Similarity=0.167 Sum_probs=15.6
Q ss_pred eeeeCCHHHHHHHHHHc
Q 032597 105 GLSFDSKEAAREFAERH 121 (137)
Q Consensus 105 ~L~F~SkE~AIayaek~ 121 (137)
.++|++.|+.|++|+..
T Consensus 4 i~~F~~~edvI~~a~~l 20 (91)
T 3jtn_A 4 IYQFHSFEDIIQLSESL 20 (91)
T ss_dssp EEEESSHHHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHc
Confidence 68999999999999974
No 11
>3jtp_A Adapter protein MECA 1; MECA;adaptor protein;degradation TAG, competence, sporulation, protein binding; 2.17A {Bacillus subtilis} PDB: 2y1r_I* 3pxg_a
Probab=46.17 E-value=14 Score=25.16 Aligned_cols=18 Identities=17% Similarity=0.117 Sum_probs=16.0
Q ss_pred eeeeCCHHHHHHHHHHcCC
Q 032597 105 GLSFDSKEAAREFAERHGW 123 (137)
Q Consensus 105 ~L~F~SkE~AIayaek~Gw 123 (137)
.+.|++.|+.|++|+ .+.
T Consensus 10 i~~F~d~edvI~~a~-~~~ 27 (98)
T 3jtp_A 10 VLRFGDFEDVISLSK-LNV 27 (98)
T ss_dssp EEEESSHHHHHHHHH-TTC
T ss_pred EEEcCCHHHHHHHhC-CCC
Confidence 799999999999999 654
No 12
>2fiu_A Conserved hypothetical protein; alpha-beta, dimeric alpha-beta barrels, structural genomics, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.58.4.16
Probab=43.46 E-value=17 Score=24.77 Aligned_cols=15 Identities=20% Similarity=0.180 Sum_probs=13.7
Q ss_pred eeeeCCHHHHHHHHH
Q 032597 105 GLSFDSKEAAREFAE 119 (137)
Q Consensus 105 ~L~F~SkE~AIayae 119 (137)
.+.|+|.|+|.++..
T Consensus 58 iieFpS~~aa~~~~~ 72 (99)
T 2fiu_A 58 VIEFPSVQHAIDCYN 72 (99)
T ss_dssp EEEESSHHHHHHHHH
T ss_pred EEECCCHHHHHHHHc
Confidence 789999999999875
No 13
>2gjf_A Designed protein; procarboxypeptidase, de novo protein; NMR {}
Probab=43.46 E-value=29 Score=21.99 Aligned_cols=25 Identities=20% Similarity=0.104 Sum_probs=22.9
Q ss_pred eeeeCCHHHHHHHHHHcCCcEEEeC
Q 032597 105 GLSFDSKEAAREFAERHGWEYVVRK 129 (137)
Q Consensus 105 ~L~F~SkE~AIayaek~Gw~Y~V~~ 129 (137)
.+.....++-.+|-+++|++|+|.-
T Consensus 52 ~V~p~~~~~f~~~L~~~~I~y~Vli 76 (78)
T 2gjf_A 52 LIPSDMVEWFLEMLKAKGIPFTVYV 76 (78)
T ss_dssp EECTTSHHHHHHHHHHHTCCEEEEE
T ss_pred EECHHHHHHHHHHHHHCCCcEEEEe
Confidence 7889999999999999999999963
No 14
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=41.44 E-value=13 Score=25.30 Aligned_cols=15 Identities=20% Similarity=0.027 Sum_probs=13.4
Q ss_pred eeCCHHHHHHHHHHc
Q 032597 107 SFDSKEAAREFAERH 121 (137)
Q Consensus 107 ~F~SkE~AIayaek~ 121 (137)
.|+|.++|+++|+.+
T Consensus 111 i~~s~~~Al~~~~~~ 125 (130)
T 4dgh_A 111 VYPVFEGALSAALTE 125 (130)
T ss_dssp EESSHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHH
Confidence 699999999999864
No 15
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=41.06 E-value=20 Score=24.12 Aligned_cols=15 Identities=33% Similarity=0.390 Sum_probs=13.7
Q ss_pred eeeeCCHHHHHHHHH
Q 032597 105 GLSFDSKEAAREFAE 119 (137)
Q Consensus 105 ~L~F~SkE~AIayae 119 (137)
.+.|+|.|+|.+|..
T Consensus 57 iieFps~~aa~a~y~ 71 (94)
T 3lo3_A 57 ILEFPSREDAYNWYH 71 (94)
T ss_dssp EEEESSHHHHHHHHH
T ss_pred EEECCCHHHHHHHHC
Confidence 899999999999865
No 16
>3syx_A Sprouty-related, EVH1 domain-containing protein 1; WH1 domain, human sprouty-related, EVH1 domain-containing PR Q7Z699; 2.45A {Homo sapiens}
Probab=41.02 E-value=15 Score=27.08 Aligned_cols=44 Identities=23% Similarity=0.317 Sum_probs=28.4
Q ss_pred CCCcEEEccCCC--Cc---cCCCcCccCCCCccCccCCceeeeCCHHHHHHHHHH
Q 032597 71 LGRWKINFMSTQ--KW---ENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAER 120 (137)
Q Consensus 71 ~~~W~LeFe~~~--rw---~nPLMGWtsS~D~~sqv~~~~L~F~SkE~AIayaek 120 (137)
.+.++|++.-.. ++ ...+--|.-+ | ++- -|.|.|+|||-+|++.
T Consensus 66 d~~vvinc~I~~~l~Ynkatp~FHqWrd~-~---~~y--GL~F~S~~dA~~F~~~ 114 (130)
T 3syx_A 66 DKMVVLECMLKKDLIYNKVTPTFHHWKID-D---KKF--GLTFQSPADARAFDRG 114 (130)
T ss_dssp TCCEEEEEECCTTCEEEEEETTEEEEEET-T---EEE--EEEESSHHHHHHHHHH
T ss_pred CCeEEEeeeecCCceEEeccccccccccc-C---eEe--ecccCCHHHHHHHHHH
Confidence 456888876431 22 1334556543 2 332 7999999999999984
No 17
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=40.13 E-value=18 Score=25.90 Aligned_cols=17 Identities=47% Similarity=0.714 Sum_probs=15.4
Q ss_pred eeeeCCHHHHHHHHHHc
Q 032597 105 GLSFDSKEAAREFAERH 121 (137)
Q Consensus 105 ~L~F~SkE~AIayaek~ 121 (137)
.|.|.|+|||-+|.++.
T Consensus 89 GL~F~se~eA~~F~~~~ 105 (130)
T 1qc6_A 89 GLNFASKEEATTFSNAM 105 (130)
T ss_dssp EEEESCHHHHHHHHHHH
T ss_pred EEecCCHHHHHHHHHHH
Confidence 89999999999998764
No 18
>2hw0_A Replicase; alpha+beta, hydrolase, replication; NMR {Porcine circovirus 2}
Probab=38.86 E-value=34 Score=24.33 Aligned_cols=24 Identities=13% Similarity=0.324 Sum_probs=18.7
Q ss_pred CCHHHHHHHHHHcCCc-EEEeCCCC
Q 032597 109 DSKEAAREFAERHGWE-YVVRKPHR 132 (137)
Q Consensus 109 ~SkE~AIayaek~Gw~-Y~V~~P~~ 132 (137)
.|.|+|++||.|.|=- ++.-+|..
T Consensus 87 gs~~q~~~Yc~Keg~~i~e~G~~~~ 111 (115)
T 2hw0_A 87 GTDQQNKEYCSKEGNLLMECGAPRS 111 (115)
T ss_dssp SCHHHHHHHHHTTSCEEEEEECCCC
T ss_pred CCHHHHHHHhccCCcEEEEeccccc
Confidence 6789999999999944 46666654
No 19
>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A {Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A
Probab=37.05 E-value=21 Score=25.39 Aligned_cols=17 Identities=41% Similarity=0.634 Sum_probs=15.5
Q ss_pred eeeeCCHHHHHHHHHHc
Q 032597 105 GLSFDSKEAAREFAERH 121 (137)
Q Consensus 105 ~L~F~SkE~AIayaek~ 121 (137)
-|.|.|++||-+|+++.
T Consensus 92 GL~F~se~eA~~F~~~v 108 (118)
T 1xod_A 92 GLTFQSPADARAFDRGI 108 (118)
T ss_dssp EEEESSHHHHHHHHHHH
T ss_pred EEecCCHHHHHHHHHHH
Confidence 89999999999999864
No 20
>1vjq_A Designed protein; structural genomics, engineered protein, PSI, protein struct initiative, structural genomics of pathogenic protozoa CONS SGPP; 2.10A {} SCOP: k.43.1.1
Probab=36.96 E-value=37 Score=21.45 Aligned_cols=26 Identities=19% Similarity=0.093 Sum_probs=23.3
Q ss_pred eeeeCCHHHHHHHHHHcCCcEEEeCC
Q 032597 105 GLSFDSKEAAREFAERHGWEYVVRKP 130 (137)
Q Consensus 105 ~L~F~SkE~AIayaek~Gw~Y~V~~P 130 (137)
.+.....++-.++-+++|+.|+|.-.
T Consensus 44 ~V~p~~~~~f~~~L~~~~i~~~v~i~ 69 (79)
T 1vjq_A 44 LIPSDMVEWFLEMLKAKGIPFTVYVE 69 (79)
T ss_dssp EECGGGHHHHHHHHHHTTCCEEEEEE
T ss_pred EECHHHHHHHHHHHHHCCCcEEEEeh
Confidence 78889999999999999999999743
No 21
>4fle_A Esterase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein, rossmann fold, HY; 2.10A {Yersinia enterocolitica subsp}
Probab=36.79 E-value=9.9 Score=26.46 Aligned_cols=35 Identities=14% Similarity=0.301 Sum_probs=23.0
Q ss_pred CcCccCCCCccCccCCceeeeCCHHHHHHHHHHcCCcEEEeCCCCC
Q 032597 88 LMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRP 133 (137)
Q Consensus 88 LMGWtsS~D~~sqv~~~~L~F~SkE~AIayaek~Gw~Y~V~~P~~~ 133 (137)
|-||.||.+... ...-.+||+++|..|.|..|.-+
T Consensus 8 lHGf~ss~~s~k-----------~~~l~~~~~~~~~~~~v~~pdl~ 42 (202)
T 4fle_A 8 IHGFNSSPSSAK-----------ATTFKSWLQQHHPHIEMQIPQLP 42 (202)
T ss_dssp ECCTTCCTTCHH-----------HHHHHHHHHHHCTTSEEECCCCC
T ss_pred eCCCCCCCCccH-----------HHHHHHHHHHcCCCcEEEEeCCC
Confidence 568888765320 01123689999999999887643
No 22
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=36.40 E-value=26 Score=23.86 Aligned_cols=32 Identities=19% Similarity=0.132 Sum_probs=25.4
Q ss_pred CccC-CCCccCccCCceeeeCCHHHHHHHHHHcCCcEEEeC
Q 032597 90 GWTS-TGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVRK 129 (137)
Q Consensus 90 GWts-S~D~~sqv~~~~L~F~SkE~AIayaek~Gw~Y~V~~ 129 (137)
.--+ +|||. -|++-.+-++.|++.|++++|..
T Consensus 83 ~~l~d~GdP~--------i~~~~~~l~~~~~~~gi~v~viP 115 (117)
T 3hh1_A 83 ALVTDAGTPA--------ISDPGYTMASAAHAAGLPVVPVP 115 (117)
T ss_dssp EEEEETTSCG--------GGSTTHHHHHHHHHTTCCEEEEC
T ss_pred EEEecCCcCe--------EeccHHHHHHHHHHCCCcEEEeC
Confidence 3455 68885 37888888999999999999863
No 23
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=34.95 E-value=28 Score=24.17 Aligned_cols=25 Identities=20% Similarity=0.441 Sum_probs=21.7
Q ss_pred eeeeCCHHHHHHHHHHcCCcEEEeC
Q 032597 105 GLSFDSKEAAREFAERHGWEYVVRK 129 (137)
Q Consensus 105 ~L~F~SkE~AIayaek~Gw~Y~V~~ 129 (137)
.+..++.++..+|++++|++|.+..
T Consensus 69 ~vs~d~~~~~~~~~~~~~~~~p~l~ 93 (157)
T 4g2e_A 69 GISVDPPFSNKAFKEHNKLNFTILS 93 (157)
T ss_dssp EEESSCHHHHHHHHHHTTCCSEEEE
T ss_pred eecccchhHHHHHHHHcCCcEEEEE
Confidence 5677999999999999999998753
No 24
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4
Probab=34.84 E-value=28 Score=24.54 Aligned_cols=17 Identities=53% Similarity=0.743 Sum_probs=15.4
Q ss_pred eeeeCCHHHHHHHHHHc
Q 032597 105 GLSFDSKEAAREFAERH 121 (137)
Q Consensus 105 ~L~F~SkE~AIayaek~ 121 (137)
-|.|.|++||-+|.++.
T Consensus 90 GLnF~se~eA~~F~~~v 106 (115)
T 1egx_A 90 GLNFGSKEDAAQFAAGM 106 (115)
T ss_dssp EEEESSHHHHHHHHHHH
T ss_pred EEecCCHHHHHHHHHHH
Confidence 89999999999998863
No 25
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Probab=34.67 E-value=28 Score=24.37 Aligned_cols=17 Identities=53% Similarity=0.702 Sum_probs=15.3
Q ss_pred eeeeCCHHHHHHHHHHc
Q 032597 105 GLSFDSKEAAREFAERH 121 (137)
Q Consensus 105 ~L~F~SkE~AIayaek~ 121 (137)
.|.|.|+|||-+|++..
T Consensus 88 GLnF~se~eA~~F~~~v 104 (112)
T 1evh_A 88 GLNFGSKEDANVFASAM 104 (112)
T ss_dssp EEEESSHHHHHHHHHHH
T ss_pred EEecCCHHHHHHHHHHH
Confidence 89999999999998763
No 26
>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2; solution structure, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=34.42 E-value=28 Score=25.09 Aligned_cols=17 Identities=41% Similarity=0.638 Sum_probs=15.5
Q ss_pred eeeeCCHHHHHHHHHHc
Q 032597 105 GLSFDSKEAAREFAERH 121 (137)
Q Consensus 105 ~L~F~SkE~AIayaek~ 121 (137)
.|.|.|++||-+|+++.
T Consensus 101 GLnF~se~eA~~F~~~v 117 (126)
T 2jp2_A 101 GLTFQSPADARAFDRGV 117 (126)
T ss_dssp EEEESSHHHHHHHHHHH
T ss_pred EEecCCHHHHHHHHHHH
Confidence 89999999999998863
No 27
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=34.02 E-value=16 Score=24.91 Aligned_cols=16 Identities=19% Similarity=0.065 Sum_probs=14.1
Q ss_pred eeeCCHHHHHHHHHHc
Q 032597 106 LSFDSKEAAREFAERH 121 (137)
Q Consensus 106 L~F~SkE~AIayaek~ 121 (137)
--|+|.++|++.|++.
T Consensus 109 ~i~~t~~~Al~~~~~~ 124 (130)
T 2kln_A 109 HIFMTLPTAVQAFRRR 124 (130)
T ss_dssp EEESCHHHHHHHHTTC
T ss_pred eeECCHHHHHHHHHhh
Confidence 3699999999999985
No 28
>3pxi_a Adapter protein MECA 1; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=33.44 E-value=21 Score=25.07 Aligned_cols=18 Identities=17% Similarity=0.117 Sum_probs=16.1
Q ss_pred eeeeCCHHHHHHHHHHcCC
Q 032597 105 GLSFDSKEAAREFAERHGW 123 (137)
Q Consensus 105 ~L~F~SkE~AIayaek~Gw 123 (137)
.+.|++.|+.|++|+ .+.
T Consensus 23 i~~F~dfEdvI~~A~-~~~ 40 (111)
T 3pxi_a 23 VLRFGDFEDVISLSK-LNV 40 (111)
T ss_dssp EEEESSTHHHHHHHT-SCC
T ss_pred EEEcCCHHHHHHHHc-CCC
Confidence 799999999999999 654
No 29
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=33.26 E-value=20 Score=26.57 Aligned_cols=21 Identities=14% Similarity=0.303 Sum_probs=19.0
Q ss_pred eeeeCCHHHHHHHHHHcCCcE
Q 032597 105 GLSFDSKEAAREFAERHGWEY 125 (137)
Q Consensus 105 ~L~F~SkE~AIayaek~Gw~Y 125 (137)
+|+|+|+.+|..-+.+||--+
T Consensus 66 kItYds~~~A~rAL~~NG~ii 86 (132)
T 3p3d_A 66 KITYDNPASAVDALLENGAVF 86 (132)
T ss_dssp EEEBSSHHHHHHHHTTTTCEE
T ss_pred EEEcCCHHHHHHHHHhCCeEe
Confidence 899999999999999999543
No 30
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A
Probab=31.87 E-value=26 Score=28.05 Aligned_cols=18 Identities=33% Similarity=0.619 Sum_probs=15.8
Q ss_pred CCHHHHHHHHHHcCCcEE
Q 032597 109 DSKEAAREFAERHGWEYV 126 (137)
Q Consensus 109 ~SkE~AIayaek~Gw~Y~ 126 (137)
..++++++||++||+.+.
T Consensus 194 ar~~~l~~fA~~h~l~~i 211 (227)
T 1snn_A 194 MSKNETKRYAEKHNLIYL 211 (227)
T ss_dssp CCHHHHHHHHHHHTCCEE
T ss_pred CCHHHHHHHHHHcCCcEE
Confidence 468999999999999875
No 31
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*
Probab=31.43 E-value=27 Score=24.95 Aligned_cols=46 Identities=24% Similarity=0.229 Sum_probs=27.1
Q ss_pred CCCcEEEccCCC-CccCCC----cCccCCCCccCccCCceeeeCCHHHHHHHHHH
Q 032597 71 LGRWKINFMSTQ-KWENPL----MGWTSTGDPYANVGDAGLSFDSKEAAREFAER 120 (137)
Q Consensus 71 ~~~W~LeFe~~~-rw~nPL----MGWtsS~D~~sqv~~~~L~F~SkE~AIayaek 120 (137)
.++.+|+.+-.. -..|+. .=|. .+|..... -|.|.|+|||-+|++.
T Consensus 52 ~~~vv~n~~i~~~l~y~~a~p~FhqW~-d~~~~~~~---GLnF~s~~eA~~F~~~ 102 (120)
T 1ddw_A 52 GSKAIINSTITPNMTFTKTSQKFGQWA-DSRANTVY---GLGFSSEHHLSKFAEK 102 (120)
T ss_dssp TTEEEEEEECCTTCCCEECSSSEEEEE-ETTTTEEE---EEECSSHHHHHHHHHH
T ss_pred CCEEEEeCEecCCcEEeeCCccccEEE-cCCCcEEE---EeccCCHHHHHHHHHH
Confidence 457777776432 112222 2233 12212444 7999999999999875
No 32
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=31.21 E-value=36 Score=23.32 Aligned_cols=26 Identities=19% Similarity=0.399 Sum_probs=22.8
Q ss_pred eeeeCCHHHHHHHHHHcCCcEEEeCC
Q 032597 105 GLSFDSKEAAREFAERHGWEYVVRKP 130 (137)
Q Consensus 105 ~L~F~SkE~AIayaek~Gw~Y~V~~P 130 (137)
.+..++.|+..+|++++|+.|.+...
T Consensus 68 ~vs~d~~~~~~~~~~~~~~~~~~~~d 93 (161)
T 3drn_A 68 GVSSDDINSHKRFKEKYKLPFILVSD 93 (161)
T ss_dssp EEESCCHHHHHHHHHHTTCCSEEEEC
T ss_pred EEeCCCHHHHHHHHHHhCCCceEEEC
Confidence 67789999999999999999987653
No 33
>2p6w_A VP54, putative glycosyltransferase (mannosyltransferase in glycosylating the PBCV-1 major...; HET: FLC; 1.60A {Paramecium bursaria chlorella virus 1} PDB: 2p72_A* 2p73_A*
Probab=30.99 E-value=21 Score=28.55 Aligned_cols=21 Identities=24% Similarity=0.591 Sum_probs=16.6
Q ss_pred CCHHHHHHHHHHcCCcEEEeC
Q 032597 109 DSKEAAREFAERHGWEYVVRK 129 (137)
Q Consensus 109 ~SkE~AIayaek~Gw~Y~V~~ 129 (137)
.+.+-=++||++||++.++..
T Consensus 24 ksiKNK~DYArrHGYelfy~d 44 (213)
T 2p6w_A 24 KTKELVEEYCSIHGYNFYYEE 44 (213)
T ss_dssp HHHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHHHHHHHHcCCeEEEee
Confidence 345556789999999999863
No 34
>3ewt_E Tumor necrosis factor receptor superfamily member 6; calmodulin-peptide complex, FAS, death domain, calcium, calcium binding protein; 2.40A {Homo sapiens}
Probab=30.77 E-value=28 Score=18.96 Aligned_cols=14 Identities=14% Similarity=0.401 Sum_probs=11.5
Q ss_pred CHHHHHHHHHHcCC.
Q 032597 110 SKEAAREFAERHGW. 123 (137)
Q Consensus 110 SkE~AIayaek~Gw. 123 (137)
+..+...|+++||+
T Consensus 12 ~~~~Vk~fvR~~gi. 25 (25)
T 3ewt_E 12 TLSQVKGFVRKNGVx 26 (26)
T ss_pred hHHHHHHHHHHcCC.
Confidence 45688999999985
No 35
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=30.76 E-value=23 Score=24.36 Aligned_cols=15 Identities=27% Similarity=0.346 Sum_probs=13.3
Q ss_pred eeCCHHHHHHHHHHc
Q 032597 107 SFDSKEAAREFAERH 121 (137)
Q Consensus 107 ~F~SkE~AIayaek~ 121 (137)
-|+|.++|++.|+.+
T Consensus 114 i~~t~~~Al~~~~~~ 128 (135)
T 4dgf_A 114 VFDHIDKALAYAKLL 128 (135)
T ss_dssp BCSSHHHHHHHHHHH
T ss_pred eeCCHHHHHHHHHHH
Confidence 699999999999864
No 36
>2qbu_A Precorrin-2 methyltransferase; HET: SAH; 2.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=30.60 E-value=42 Score=24.89 Aligned_cols=33 Identities=15% Similarity=0.293 Sum_probs=26.4
Q ss_pred cCccCCCCccCccCCceeeeCCHHHHHHHHHHcCCcEEEeC
Q 032597 89 MGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVRK 129 (137)
Q Consensus 89 MGWtsS~D~~sqv~~~~L~F~SkE~AIayaek~Gw~Y~V~~ 129 (137)
...-++|||. -|++-..-++.|+++|++++|..
T Consensus 97 V~~l~~GDP~--------i~~~~~~l~~~~~~~gi~v~viP 129 (232)
T 2qbu_A 97 VAFITLGDPS--------IYSTFSYLQQRIEDMGFKTEMVP 129 (232)
T ss_dssp EEEEESBCTT--------BSCSHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEeCCCCc--------cchhHHHHHHHHHHCCCcEEEeC
Confidence 4456679996 47788888999999999999864
No 37
>2ebb_A Pterin-4-alpha-carbinolamine dehydratase; coenzyme biosyntheses, GK1984, structural genomics, NPPSFA; 1.60A {Geobacillus kaustophilus}
Probab=30.05 E-value=32 Score=23.72 Aligned_cols=31 Identities=19% Similarity=0.362 Sum_probs=24.1
Q ss_pred CCCcCccCCCCc-cCccCCceeeeCCHHHHHHHHHH
Q 032597 86 NPLMGWTSTGDP-YANVGDAGLSFDSKEAAREFAER 120 (137)
Q Consensus 86 nPLMGWtsS~D~-~sqv~~~~L~F~SkE~AIayaek 120 (137)
..|-||+-.++. +.. ..+|++-.+|++|..+
T Consensus 13 ~~l~gW~~~~~~~i~r----~f~F~~f~~a~~F~~~ 44 (101)
T 2ebb_A 13 EKADGWKLADERWIVK----KYRFQDYLQGIEFVRR 44 (101)
T ss_dssp HTSTTCEEETTTEEEE----EEECSSHHHHHHHHHH
T ss_pred hcCCCCeECCCCCEEE----EEEeCCHHHHHHHHHH
Confidence 467799988887 432 7899999999998665
No 38
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Probab=29.90 E-value=28 Score=23.48 Aligned_cols=26 Identities=12% Similarity=0.314 Sum_probs=22.4
Q ss_pred eeeeCCHHHHHHHHHHcCCcEEEeCC
Q 032597 105 GLSFDSKEAAREFAERHGWEYVVRKP 130 (137)
Q Consensus 105 ~L~F~SkE~AIayaek~Gw~Y~V~~P 130 (137)
.+..++.|+..+|++++|+.|.+...
T Consensus 75 ~is~d~~~~~~~~~~~~~~~~~~~~d 100 (160)
T 1xvw_A 75 AISVGPPPTHKIWATQSGFTFPLLSD 100 (160)
T ss_dssp EEESCCHHHHHHHHHHHTCCSCEEEC
T ss_pred EEeCCCHHHHHHHHHhcCCCceEEec
Confidence 67789999999999999999887644
No 39
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=29.81 E-value=20 Score=21.83 Aligned_cols=18 Identities=22% Similarity=0.591 Sum_probs=15.5
Q ss_pred CCHHHHHHHHHHcCCcEE
Q 032597 109 DSKEAAREFAERHGWEYV 126 (137)
Q Consensus 109 ~SkE~AIayaek~Gw~Y~ 126 (137)
+..+.|+.|-+.++|+++
T Consensus 19 ~d~~~A~~~Lea~nWDLe 36 (45)
T 3e21_A 19 ENIDEAITLLEQNNWDLV 36 (45)
T ss_dssp CCHHHHHHHHHHTTTCHH
T ss_pred CCHHHHHHHHHHcCCcHH
Confidence 456899999999999975
No 40
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=29.50 E-value=37 Score=23.13 Aligned_cols=26 Identities=27% Similarity=0.454 Sum_probs=22.5
Q ss_pred eeeeCCHHHHHHHHHHcCCcEEEeCC
Q 032597 105 GLSFDSKEAAREFAERHGWEYVVRKP 130 (137)
Q Consensus 105 ~L~F~SkE~AIayaek~Gw~Y~V~~P 130 (137)
.+..++.++..+|++++|+.|.+...
T Consensus 73 ~is~d~~~~~~~~~~~~~~~~~~l~D 98 (159)
T 2a4v_A 73 GLSADSVTSQKKFQSKQNLPYHLLSD 98 (159)
T ss_dssp EEESCCHHHHHHHHHHHTCSSEEEEC
T ss_pred EEeCCCHHHHHHHHHHhCCCceEEEC
Confidence 67889999999999999999987643
No 41
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}
Probab=28.97 E-value=41 Score=23.24 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=22.0
Q ss_pred eeeeCCHHHHHHHHHHcCC-cEEEeCC
Q 032597 105 GLSFDSKEAAREFAERHGW-EYVVRKP 130 (137)
Q Consensus 105 ~L~F~SkE~AIayaek~Gw-~Y~V~~P 130 (137)
.+..++.|+..+|++++|+ .|.+...
T Consensus 84 ~Is~d~~~~~~~~~~~~~~~~~~~l~D 110 (171)
T 2yzh_A 84 VVSMDLPFAQKRFCESFNIQNVTVASD 110 (171)
T ss_dssp EEESSCHHHHHHHHHHTTCCSSEEEEC
T ss_pred EEeCCCHHHHHHHHHHcCCCCeEEeec
Confidence 6778999999999999999 7877543
No 42
>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10
Probab=28.95 E-value=38 Score=23.31 Aligned_cols=26 Identities=15% Similarity=0.226 Sum_probs=21.9
Q ss_pred eeeeCCHHHHHHHHHHcCC-cEEEeCC
Q 032597 105 GLSFDSKEAAREFAERHGW-EYVVRKP 130 (137)
Q Consensus 105 ~L~F~SkE~AIayaek~Gw-~Y~V~~P 130 (137)
.+..++.++..+|++++|+ .|.+...
T Consensus 79 ~is~d~~~~~~~~~~~~~~~~~~~l~D 105 (163)
T 1psq_A 79 TVSMDLPFAQKRWCGAEGLDNAIMLSD 105 (163)
T ss_dssp EEESSCHHHHHHHHHHHTCTTSEEEEC
T ss_pred EEECCCHHHHHHHHHhcCCCCcEEecC
Confidence 6778999999999999999 8876543
No 43
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=28.81 E-value=30 Score=23.43 Aligned_cols=25 Identities=24% Similarity=0.527 Sum_probs=22.0
Q ss_pred eeeeCCHHHHHHHHHHcCCcEEEeC
Q 032597 105 GLSFDSKEAAREFAERHGWEYVVRK 129 (137)
Q Consensus 105 ~L~F~SkE~AIayaek~Gw~Y~V~~ 129 (137)
.+..++.|+..+|++++|+.|.+..
T Consensus 74 ~vs~d~~~~~~~~~~~~~~~~~~~~ 98 (163)
T 3gkn_A 74 GVSRDSVKSHDNFCAKQGFAFPLVS 98 (163)
T ss_dssp EEESSCHHHHHHHHHHHCCSSCEEE
T ss_pred EEeCCCHHHHHHHHHHhCCCceEEE
Confidence 6678999999999999999988764
No 44
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=28.53 E-value=15 Score=25.31 Aligned_cols=16 Identities=25% Similarity=0.071 Sum_probs=13.7
Q ss_pred eeeCCHHHHHHHHHHc
Q 032597 106 LSFDSKEAAREFAERH 121 (137)
Q Consensus 106 L~F~SkE~AIayaek~ 121 (137)
--|+|.++|+++|+.+
T Consensus 126 ~if~s~~~Al~~~~~~ 141 (143)
T 3llo_A 126 LLFHSIHDAVLGSQVR 141 (143)
T ss_dssp GEESSHHHHHHHTSSC
T ss_pred eEECcHHHHHHHHHhc
Confidence 3699999999999764
No 45
>1usm_A DCOH, hepatocyte nuclear factor 1-alpha; transcriptional stimulator, dimerization cofactor, dehydratase, 4A-carbinolamine dehydratase; 1.2A {Thermus thermophilus} SCOP: d.74.1.1 PDB: 1uso_A
Probab=27.61 E-value=37 Score=22.25 Aligned_cols=30 Identities=23% Similarity=0.419 Sum_probs=19.7
Q ss_pred cCccCCCCccCccCCceeeeCCHHHHHHHHHH
Q 032597 89 MGWTSTGDPYANVGDAGLSFDSKEAAREFAER 120 (137)
Q Consensus 89 MGWtsS~D~~sqv~~~~L~F~SkE~AIayaek 120 (137)
+||+-.+|+.. + .-..+|++-.+|++|..+
T Consensus 1 ~gW~~~~~~~~-i-~r~f~F~~f~~a~~F~~~ 30 (80)
T 1usm_A 1 MDWEERENLKR-L-VKTFAFPNFREALDFANR 30 (80)
T ss_dssp CCCEEC---CC-E-EEEEECSSHHHHHHHHHH
T ss_pred CCCeEeCCccE-E-EEEEEeCCHHHHHHHHHH
Confidence 58887777432 2 127899999999998665
No 46
>2zib_A Type II antifreeze protein; thermal hysteresis, lectin; 1.34A {Brachyopsis rostratus}
Probab=27.15 E-value=35 Score=22.97 Aligned_cols=37 Identities=16% Similarity=0.066 Sum_probs=25.2
Q ss_pred cCCCcCccCCCCccCccCCceeeeCCHHHHHHHHHHcCCc
Q 032597 85 ENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWE 124 (137)
Q Consensus 85 ~nPLMGWtsS~D~~sqv~~~~L~F~SkE~AIayaek~Gw~ 124 (137)
..|..||..-++.--.+ .-.-.|-++|..+|+++|=.
T Consensus 8 ~~~~~~~~~~~~~CY~~---~~~~~~w~~A~~~C~~~g~~ 44 (133)
T 2zib_A 8 LVCPAGWTLHGQRCFYS---EATAMTWDLAEANCVNKGGH 44 (133)
T ss_dssp CCCCTTCEEETTEEEEE---EEEEECHHHHHHHHHHTTSE
T ss_pred eeCCCCEEEeCCEEEEE---ECCccCHHHHHHHHHHCCCE
Confidence 36788888877743222 11235789999999998843
No 47
>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A
Probab=27.12 E-value=45 Score=23.44 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=21.8
Q ss_pred eeeeCCHHHHHHHHHHcCCcEEEeC
Q 032597 105 GLSFDSKEAAREFAERHGWEYVVRK 129 (137)
Q Consensus 105 ~L~F~SkE~AIayaek~Gw~Y~V~~ 129 (137)
.+.-++.++.-+|++++|++|.+..
T Consensus 72 ~is~d~~~~~~~~~~~~~~~fp~l~ 96 (164)
T 4gqc_A 72 AISVDSPWCLKKFKDENRLAFNLLS 96 (164)
T ss_dssp EEESSCHHHHHHHHHHTTCCSEEEE
T ss_pred EecCCCHHHHHHHHHhcCcccceee
Confidence 5677999999999999999998753
No 48
>2e0n_A Precorrin-2 C20-methyltransferase; cobalt-factor II, tetrapyrrole, S-adenosylmethi transferase; HET: SAH; 2.00A {Chlorobaculum tepidum} PDB: 2e0k_A*
Probab=27.07 E-value=46 Score=25.45 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=26.4
Q ss_pred cCccCCCCccCccCCceeeeCCHHHHHHHHHHcCCcEEEeC
Q 032597 89 MGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVRK 129 (137)
Q Consensus 89 MGWtsS~D~~sqv~~~~L~F~SkE~AIayaek~Gw~Y~V~~ 129 (137)
...-++|||. -|++-..-++.|+++|++++|..
T Consensus 99 Va~l~~GDP~--------~~~~~~~l~~~l~~~gi~v~viP 131 (259)
T 2e0n_A 99 VAVVSVGDGG--------FYSTASAIIERARRDGLDCSMTP 131 (259)
T ss_dssp EEEEESBCTT--------BSCTHHHHHHHHHTTTCCEEEEC
T ss_pred EEEEeCCCCc--------ccccHHHHHHHHHHCCCCEEEeC
Confidence 3455679996 57888888899999999999864
No 49
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=26.89 E-value=28 Score=29.62 Aligned_cols=16 Identities=19% Similarity=0.360 Sum_probs=13.7
Q ss_pred HHHHHHcCCcEEEeCC
Q 032597 115 REFAERHGWEYVVRKP 130 (137)
Q Consensus 115 Iayaek~Gw~Y~V~~P 130 (137)
..||+++||.++|.+-
T Consensus 153 ~r~Ae~~g~k~evl~~ 168 (365)
T 1gqe_A 153 LRWAESRGFKTEIIEE 168 (365)
T ss_dssp HHHHHHTTCEEEEEEE
T ss_pred HHHHHHCCCeEEEEec
Confidence 5799999999999753
No 50
>1mwq_A Hypothetical protein HI0828; YCII_HAEIN, structural genomic structure 2 function project, S2F, unknown function; HET: MSE 1PE; 0.99A {Haemophilus influenzae} SCOP: d.58.4.7
Probab=26.75 E-value=33 Score=22.59 Aligned_cols=25 Identities=24% Similarity=0.478 Sum_probs=19.4
Q ss_pred eeeeCCHHHHHHHHHH-----cCC--cEEEeC
Q 032597 105 GLSFDSKEAAREFAER-----HGW--EYVVRK 129 (137)
Q Consensus 105 ~L~F~SkE~AIayaek-----~Gw--~Y~V~~ 129 (137)
.+.++|+|+|++++++ +|. .|+|.+
T Consensus 65 i~~a~s~eea~~~~~~dP~~~~G~~~~~eVrp 96 (101)
T 1mwq_A 65 IAQFENLQAAKDWAAQDPYVEAGVYADVIVKP 96 (101)
T ss_dssp EEECSSHHHHHHHHHTCHHHHTTCEEEEEEEE
T ss_pred EEEeCCHHHHHHHHHhCChhhcCCcceEEEEE
Confidence 5789999999999986 365 577754
No 51
>1mwp_A Amyloid A4 protein; heparin binding, sugar binding protein; 1.80A {Homo sapiens} SCOP: d.170.2.1
Probab=26.58 E-value=34 Score=24.12 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=18.6
Q ss_pred eeeeCCHHHHHHHHHHcCCcEEE
Q 032597 105 GLSFDSKEAAREFAERHGWEYVV 127 (137)
Q Consensus 105 ~L~F~SkE~AIayaek~Gw~Y~V 127 (137)
.--|.++++.++||++.--+.+|
T Consensus 33 ~~C~~~k~eIL~YCrkvYP~l~I 55 (96)
T 1mwp_A 33 KTCIDTKEGILQYCQEVYPELQI 55 (96)
T ss_dssp CBCCCSHHHHHHHHHHHSTTSCE
T ss_pred ccccCChHHHHHHHHHHCCCCcc
Confidence 34678999999999998766654
No 52
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.53 E-value=57 Score=20.58 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=20.8
Q ss_pred eeCCHHHHHHHHHHcCCcEEEeCCC
Q 032597 107 SFDSKEAAREFAERHGWEYVVRKPH 131 (137)
Q Consensus 107 ~F~SkE~AIayaek~Gw~Y~V~~P~ 131 (137)
.+.+.+++.+++++.|+++.|....
T Consensus 30 ~~~~~~~~~~~~~~~~~P~vvKp~~ 54 (108)
T 2cqy_A 30 VVKDAEEAVRIAREIGYPVMIKASA 54 (108)
T ss_dssp CBSSHHHHHHHHHHHCSSEEEEETT
T ss_pred ccCCHHHHHHHHHhcCCCEEEEECC
Confidence 5678999999999999998876543
No 53
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10
Probab=26.34 E-value=52 Score=22.77 Aligned_cols=25 Identities=8% Similarity=-0.032 Sum_probs=21.7
Q ss_pred eeeeCCHHHHHHHHHHcCC--cEEEeC
Q 032597 105 GLSFDSKEAAREFAERHGW--EYVVRK 129 (137)
Q Consensus 105 ~L~F~SkE~AIayaek~Gw--~Y~V~~ 129 (137)
.+..++.++.-+|++++|+ .|.+..
T Consensus 76 ~Is~d~~~~~~~~~~~~~~~~~~~~l~ 102 (162)
T 1tp9_A 76 CISVNDPFVMKAWAKSYPENKHVKFLA 102 (162)
T ss_dssp EEESSCHHHHHHHHHTCTTCSSEEEEE
T ss_pred EEECCCHHHHHHHHHhcCCCCCeEEEE
Confidence 6788999999999999999 788754
No 54
>3ndc_A Precorrin-4 C(11)-methyltransferase; SAH; HET: SAH; 2.00A {Rhodobacter capsulatus} PDB: 3nei_A
Probab=25.77 E-value=51 Score=25.64 Aligned_cols=33 Identities=12% Similarity=0.062 Sum_probs=25.9
Q ss_pred cCccCCCCccCccCCceeeeCCHHHHHHHHHHcCCcEEEeC
Q 032597 89 MGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVRK 129 (137)
Q Consensus 89 MGWtsS~D~~sqv~~~~L~F~SkE~AIayaek~Gw~Y~V~~ 129 (137)
-..-++|||. -|+.--+-++.|+++|++++|..
T Consensus 79 Va~L~~GDP~--------iyg~~~~l~~~l~~~gi~veviP 111 (264)
T 3ndc_A 79 VARLHSGDLS--------IWSAMGEQLRRLRALNIPYDVTP 111 (264)
T ss_dssp EEEEESBCTT--------SSCSHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEeCCCCc--------cccHHHHHHHHHHhCCCCEEEeC
Confidence 3456789996 57777778888999999999864
No 55
>3tbi_A RNA polymerase-associated protein GP33; transcription accessory protein, transcription; 3.00A {Enterobacteria phage T4}
Probab=25.63 E-value=29 Score=25.35 Aligned_cols=15 Identities=27% Similarity=0.240 Sum_probs=13.3
Q ss_pred HHHHHHHHHHcCCcE
Q 032597 111 KEAAREFAERHGWEY 125 (137)
Q Consensus 111 kE~AIayaek~Gw~Y 125 (137)
.|+++.|||.+++++
T Consensus 59 LEA~~~w~EEnsIe~ 73 (115)
T 3tbi_A 59 LEATTAFLEENSIPE 73 (115)
T ss_dssp HHHHHHHHHHHTCCG
T ss_pred HHHHHHHHHHcCCCH
Confidence 689999999999975
No 56
>2hiq_A Hypothetical protein YDHR; hypothetical protein JW1657, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: d.58.4.12 PDB: 1wd6_A
Probab=25.52 E-value=30 Score=24.99 Aligned_cols=29 Identities=24% Similarity=0.491 Sum_probs=22.4
Q ss_pred ccCCCCccCccCCceeeeCCHHHHHHHHHHc
Q 032597 91 WTSTGDPYANVGDAGLSFDSKEAAREFAERH 121 (137)
Q Consensus 91 WtsS~D~~sqv~~~~L~F~SkE~AIayaek~ 121 (137)
||-+-|+.. .+| ..-|+|+++|.+|.+.|
T Consensus 48 Wte~e~t~~-aGG-iYLFes~~~AeaY~~~h 76 (113)
T 2hiq_A 48 WTESEKNHE-AGG-IYLFTDEKSALAYLEKH 76 (113)
T ss_dssp EEEETTTTE-EEE-EEEESSHHHHHHHHHHH
T ss_pred EEEcCCCCe-eeE-EEEeCCHHHHHHHHHHH
Confidence 777777743 333 57799999999999876
No 57
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} SCOP: d.115.1.0 PDB: 3mgz_A 3mk5_A
Probab=24.71 E-value=41 Score=26.52 Aligned_cols=18 Identities=28% Similarity=0.582 Sum_probs=15.6
Q ss_pred CCHHHHHHHHHHcCCcEE
Q 032597 109 DSKEAAREFAERHGWEYV 126 (137)
Q Consensus 109 ~SkE~AIayaek~Gw~Y~ 126 (137)
..++++++||++||+.+.
T Consensus 176 ar~~~l~~fA~~h~l~~i 193 (206)
T 3mio_A 176 AHTDELRVFADEHGLALI 193 (206)
T ss_dssp CCHHHHHHHHHHHTCEEE
T ss_pred CCHHHHHHHHHHcCCcEE
Confidence 458999999999999874
No 58
>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}
Probab=24.61 E-value=53 Score=23.27 Aligned_cols=25 Identities=8% Similarity=0.173 Sum_probs=21.6
Q ss_pred eeeeCCHHHHHHHHHHcCCc--EEEeC
Q 032597 105 GLSFDSKEAAREFAERHGWE--YVVRK 129 (137)
Q Consensus 105 ~L~F~SkE~AIayaek~Gw~--Y~V~~ 129 (137)
.+..++.++..+|++++|++ |.+..
T Consensus 72 ~Is~d~~~~~~~~~~~~~~~~~fp~l~ 98 (167)
T 2wfc_A 72 CMAVNDSFVMDAWGKAHGADDKVQMLA 98 (167)
T ss_dssp EEESSCHHHHHHHHHHTTCTTTSEEEE
T ss_pred EEeCCCHHHHHHHHHhcCCCcceEEEE
Confidence 67789999999999999998 87654
No 59
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4
Probab=24.44 E-value=44 Score=25.50 Aligned_cols=46 Identities=24% Similarity=0.256 Sum_probs=27.3
Q ss_pred CCCcEEEccCCC-CccCC----CcCccCCCCccCccCCceeeeCCHHHHHHHHHH
Q 032597 71 LGRWKINFMSTQ-KWENP----LMGWTSTGDPYANVGDAGLSFDSKEAAREFAER 120 (137)
Q Consensus 71 ~~~W~LeFe~~~-rw~nP----LMGWtsS~D~~sqv~~~~L~F~SkE~AIayaek 120 (137)
.++.+|++.-.. -..++ +.=|.. +|..... -|.|.|+|||-+|++.
T Consensus 57 d~kvvinc~I~~~l~Y~kasp~FHqW~d-~~~~~v~---GLnF~Se~eA~~F~~~ 107 (168)
T 1i2h_A 57 GSKAIINSTITPNMTFTKTSQKFGQWAD-SRANTVY---GLGFSSEHHLSKFAEK 107 (168)
T ss_dssp TTEEEEEEECCTTCCEEEEETTEEEEEE-TTTTEEE---EEEESSHHHHHHHHHH
T ss_pred CCEEEEecEecCCcEEeeCCcccceeec-CCCcEEE---EeccCCHHHHHHHHHH
Confidence 457788876432 11122 222332 2323444 7999999999999875
No 60
>3jst_A Putative pterin-4-alpha-carbinolamine dehydratase; lyase, structural genomics, seattle structural genomics CENT infectious disease, ssgcid; 2.10A {Brucella melitensis} SCOP: d.74.1.0
Probab=24.41 E-value=55 Score=22.22 Aligned_cols=31 Identities=19% Similarity=0.403 Sum_probs=23.1
Q ss_pred CCCcCccCCCC--ccCccCCceeeeCCHHHHHHHHHH
Q 032597 86 NPLMGWTSTGD--PYANVGDAGLSFDSKEAAREFAER 120 (137)
Q Consensus 86 nPLMGWtsS~D--~~sqv~~~~L~F~SkE~AIayaek 120 (137)
..|-||+-..| -+.. ..+|++-.+|++|..+
T Consensus 16 ~~l~gW~~~~~~~~l~r----~f~f~~f~~a~~f~~~ 48 (97)
T 3jst_A 16 RALDGWQKVDGREAITR----SFKFKDFSTAFGFMAQ 48 (97)
T ss_dssp HTSTTCEECTTSSCEEE----EEECSSHHHHHHHHHH
T ss_pred hcCCCCeEeCCCCeEEE----EEEeCCHHHHHHHHHH
Confidence 46789988744 3432 6899999999998755
No 61
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=24.24 E-value=49 Score=22.02 Aligned_cols=24 Identities=17% Similarity=0.446 Sum_probs=21.3
Q ss_pred eeeeCCHHHHHHHHHHcCCcEEEe
Q 032597 105 GLSFDSKEAAREFAERHGWEYVVR 128 (137)
Q Consensus 105 ~L~F~SkE~AIayaek~Gw~Y~V~ 128 (137)
.+..++.++..+|++++|+.|.+.
T Consensus 62 ~v~~d~~~~~~~~~~~~~~~~~~~ 85 (151)
T 3raz_A 62 GIALDTSDNIGNFLKQTPVSYPIW 85 (151)
T ss_dssp EEESSCHHHHHHHHHHSCCSSCEE
T ss_pred EEECCChHHHHHHHHHcCCCCceE
Confidence 677899999999999999998765
No 62
>1uas_A Alpha-galactosidase; TIM-barrel, beta-alpha-barrel, greek KEY motif, hydrolase; HET: GLA; 1.50A {Oryza sativa} SCOP: b.71.1.1 c.1.8.1
Probab=24.21 E-value=16 Score=29.85 Aligned_cols=40 Identities=25% Similarity=0.499 Sum_probs=29.0
Q ss_pred cCCCcCccCCCCccCccCCceeeeCCHHHHHHHH-----HHcCCcEEEeC
Q 032597 85 ENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFA-----ERHGWEYVVRK 129 (137)
Q Consensus 85 ~nPLMGWtsS~D~~sqv~~~~L~F~SkE~AIaya-----ek~Gw~Y~V~~ 129 (137)
.-|-|||.|=.-... .+.-+...+.++++ .+.|++|.|.+
T Consensus 7 ~~pp~gwnsW~~~~~-----~~~e~~i~~~ad~~~~~gl~~~G~~~v~iD 51 (362)
T 1uas_A 7 RTPQMGWNSWNHFYC-----GINEQIIRETADALVNTGLAKLGYQYVNID 51 (362)
T ss_dssp SSCCEEEESHHHHTT-----CCCHHHHHHHHHHHHHTSHHHHTCCEEECC
T ss_pred CCCCEEEECHHHHCC-----CCCHHHHHHHHHHHHHcCchhcCCcEEEEC
Confidence 368899998643333 34566667778888 88999999875
No 63
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=24.19 E-value=32 Score=29.22 Aligned_cols=16 Identities=38% Similarity=0.468 Sum_probs=13.7
Q ss_pred HHHHHHcCCcEEEeCC
Q 032597 115 REFAERHGWEYVVRKP 130 (137)
Q Consensus 115 Iayaek~Gw~Y~V~~P 130 (137)
..||+++||+++|.+-
T Consensus 132 ~r~ae~~g~k~ev~~~ 147 (354)
T 3d5a_X 132 LRFAEEMGFETEVLDS 147 (354)
T ss_dssp HHHHHHHTCEEEEEEE
T ss_pred HHHHHHcCCeEEEEeC
Confidence 5799999999999753
No 64
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=24.08 E-value=67 Score=19.92 Aligned_cols=21 Identities=14% Similarity=0.196 Sum_probs=16.8
Q ss_pred eeeeCCHHHHHHHHHH-cCCcE
Q 032597 105 GLSFDSKEAAREFAER-HGWEY 125 (137)
Q Consensus 105 ~L~F~SkE~AIayaek-~Gw~Y 125 (137)
-+.|.+.|+|.+-.+. ||..+
T Consensus 61 fV~f~~~~~a~~Ai~~l~g~~~ 82 (95)
T 2ek1_A 61 MVAFESRDEATAAVIDLNDRPI 82 (95)
T ss_dssp EEEESSHHHHHHHHHHHTTCEE
T ss_pred EEEECCHHHHHHHHHHhCCCeE
Confidence 6899999999988875 66543
No 65
>2z6r_A Diphthine synthase; methyltransferase, S-adenosyl-L-methionine, transferase; HET: SAH MES; 1.50A {Pyrococcus horikoshii} PDB: 2dek_A* 1wng_A* 1vce_A* 2ed3_A* 2e4r_A* 2owg_A* 2ek3_A* 2pcm_A* 2p5c_A* 2hut_A* 2emr_A* 2el3_A* 2el0_A* 2ejk_A* 2eld_A* 2el2_A* 2eka_A* 2eh5_A* 2pcg_A* 2el1_A* ...
Probab=24.05 E-value=48 Score=25.41 Aligned_cols=33 Identities=27% Similarity=0.355 Sum_probs=25.8
Q ss_pred cCccCCCCccCccCCceeeeCCHHHHHHHHHHcCCcEEEeC
Q 032597 89 MGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVRK 129 (137)
Q Consensus 89 MGWtsS~D~~sqv~~~~L~F~SkE~AIayaek~Gw~Y~V~~ 129 (137)
-..-++|||+ -|++--.-+..|+++|++++|..
T Consensus 80 V~~l~~GDP~--------i~~~~~~l~~~l~~~gi~veviP 112 (265)
T 2z6r_A 80 VAFLTPGDPL--------VATTHAELRIRAKRAGVESYVIH 112 (265)
T ss_dssp EEEEESBCTT--------SSSSTHHHHHHHHHTTCCEEEEC
T ss_pred EEEEECCCCc--------CCCCHHHHHHHHHHCCCcEEEEC
Confidence 3455689996 46777778889999999999964
No 66
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Probab=23.94 E-value=31 Score=29.42 Aligned_cols=16 Identities=38% Similarity=0.576 Sum_probs=13.8
Q ss_pred HHHHHHcCCcEEEeCC
Q 032597 115 REFAERHGWEYVVRKP 130 (137)
Q Consensus 115 Iayaek~Gw~Y~V~~P 130 (137)
..||+++||.++|..-
T Consensus 141 ~r~Ae~~g~k~evl~~ 156 (365)
T 2ihr_1 141 TRFAERQGFQVEVVDL 156 (365)
T ss_dssp HHHHHTTTCEEEEEEE
T ss_pred HHHHHHcCCeEEEEec
Confidence 5799999999999763
No 67
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=23.86 E-value=33 Score=29.37 Aligned_cols=16 Identities=31% Similarity=0.910 Sum_probs=13.8
Q ss_pred HHHHHHcCCcEEEeCC
Q 032597 115 REFAERHGWEYVVRKP 130 (137)
Q Consensus 115 Iayaek~Gw~Y~V~~P 130 (137)
..||+++||.++|.+-
T Consensus 150 ~r~Ae~~g~kvevl~~ 165 (371)
T 1zbt_A 150 QKYAENQGWKFEVMEA 165 (371)
T ss_dssp HHHHHHHTCEEEEEEE
T ss_pred HHHHHHcCCeEEEEec
Confidence 5799999999999753
No 68
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=23.50 E-value=26 Score=20.42 Aligned_cols=19 Identities=16% Similarity=0.057 Sum_probs=16.3
Q ss_pred eeeeCCHHHHHHHHHHcCC
Q 032597 105 GLSFDSKEAAREFAERHGW 123 (137)
Q Consensus 105 ~L~F~SkE~AIayaek~Gw 123 (137)
.|...+..+++.+|.++|+
T Consensus 40 kl~~~~~~~l~~~~~~~g~ 58 (61)
T 2jpc_A 40 KLQVHKVTELLNCARRMRL 58 (61)
T ss_dssp HHTCSSHHHHHHHHHCSCC
T ss_pred HHCCCCHHHHHHHHHHcCC
Confidence 4667889999999999987
No 69
>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0
Probab=23.47 E-value=58 Score=22.39 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=21.6
Q ss_pred eeeeCCHHHHHHHHHHcCC-cEEEeC
Q 032597 105 GLSFDSKEAAREFAERHGW-EYVVRK 129 (137)
Q Consensus 105 ~L~F~SkE~AIayaek~Gw-~Y~V~~ 129 (137)
.+..++.++..+|++++|+ .|.+..
T Consensus 82 ~is~d~~~~~~~~~~~~~~~~~~~l~ 107 (166)
T 3p7x_A 82 TISADLPFAQKRWCASAGLDNVITLS 107 (166)
T ss_dssp EEESSCHHHHHHHHHHHTCSSCEEEE
T ss_pred EEECCCHHHHHHHHHHcCCCceEEcc
Confidence 5678999999999999999 787754
No 70
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A
Probab=22.93 E-value=35 Score=28.86 Aligned_cols=16 Identities=38% Similarity=0.787 Sum_probs=13.7
Q ss_pred HHHHHHcCCcEEEeCC
Q 032597 115 REFAERHGWEYVVRKP 130 (137)
Q Consensus 115 Iayaek~Gw~Y~V~~P 130 (137)
..||+++||+++|.+-
T Consensus 113 ~r~ae~~g~kvevl~~ 128 (342)
T 1rq0_A 113 TRYAERKGWNLEVAEI 128 (342)
T ss_dssp HHHHHHHTCEEEEEEE
T ss_pred HHHHHHcCCeEEEEec
Confidence 5799999999999753
No 71
>1va0_A Uroporphyrin-III C-methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.97A {Thermus thermophilus} SCOP: c.90.1.1 PDB: 1v9a_A
Probab=22.41 E-value=73 Score=23.91 Aligned_cols=32 Identities=28% Similarity=0.269 Sum_probs=25.6
Q ss_pred CccCCCCccCccCCceeeeCCHHHHHHHHHHcCCcEEEeC
Q 032597 90 GWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVRK 129 (137)
Q Consensus 90 GWtsS~D~~sqv~~~~L~F~SkE~AIayaek~Gw~Y~V~~ 129 (137)
..-.+|||. -|++--.-+++|+++|++++|..
T Consensus 79 ~~l~~GDP~--------i~~~~~~l~~~l~~~gi~v~viP 110 (239)
T 1va0_A 79 VRLKGGDPM--------VFGRGGEEVLFLLRHGVPVEVVP 110 (239)
T ss_dssp EEEESBCTT--------SSSSHHHHHHHHHHTTCCEEEEC
T ss_pred EEEeCCCCc--------cccCHHHHHHHHHHCCCcEEEEC
Confidence 345678986 47788888889999999999864
No 72
>4a56_A PULS, pullulanase secretion protein PULS; protein transport, T2SS; 1.24A {Klebsiella oxytoca}
Probab=22.20 E-value=37 Score=23.70 Aligned_cols=13 Identities=31% Similarity=0.713 Sum_probs=11.8
Q ss_pred HHHHHHHHcCCcE
Q 032597 113 AAREFAERHGWEY 125 (137)
Q Consensus 113 ~AIayaek~Gw~Y 125 (137)
.|+.||+++||+-
T Consensus 38 ~a~~~A~~~~Wd~ 50 (93)
T 4a56_A 38 AAINVGKKRGWAN 50 (93)
T ss_dssp HHHHHHHHHTCCC
T ss_pred HHHHHHHHcCCCh
Confidence 7999999999984
No 73
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=22.17 E-value=78 Score=19.14 Aligned_cols=20 Identities=15% Similarity=0.297 Sum_probs=16.4
Q ss_pred eeeeCCHHHHHHHHHH-cCCc
Q 032597 105 GLSFDSKEAAREFAER-HGWE 124 (137)
Q Consensus 105 ~L~F~SkE~AIayaek-~Gw~ 124 (137)
-+.|.+.|+|.+-.+. +|..
T Consensus 51 fV~f~~~~~a~~A~~~l~g~~ 71 (88)
T 4a8x_A 51 YVEFENPDEAEKALKHMDGGQ 71 (88)
T ss_dssp EEEESSHHHHHHHHHHHTTCE
T ss_pred EEEEecHHHHHHHHHHcCCCe
Confidence 6899999999988885 6654
No 74
>4e16_A Precorrin-4 C(11)-methyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.49A {Clostridium difficile}
Probab=21.99 E-value=58 Score=25.00 Aligned_cols=33 Identities=18% Similarity=0.107 Sum_probs=26.1
Q ss_pred cCccCCCCccCccCCceeeeCCHHHHHHHHHHcCCcEEEeC
Q 032597 89 MGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVRK 129 (137)
Q Consensus 89 MGWtsS~D~~sqv~~~~L~F~SkE~AIayaek~Gw~Y~V~~ 129 (137)
...-++|||. -|+.--+-+++|++.|++++|..
T Consensus 80 V~~l~~GDP~--------i~~~~~~l~~~l~~~gi~veviP 112 (253)
T 4e16_A 80 VVRLQTGDFS--------IYGSIREQVEDLNKLNIDYDCTP 112 (253)
T ss_dssp EEEEESBCTT--------TTCCHHHHHHHHHHHTCCEEEEC
T ss_pred EEEEeCCCCc--------cccCHHHHHHHHHHCCCCEEEEC
Confidence 4566789996 47777777889999999999864
No 75
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=21.77 E-value=64 Score=21.84 Aligned_cols=24 Identities=17% Similarity=0.101 Sum_probs=18.9
Q ss_pred eeeeC----CHHHHHHHHHHcCCcEEEe
Q 032597 105 GLSFD----SKEAAREFAERHGWEYVVR 128 (137)
Q Consensus 105 ~L~F~----SkE~AIayaek~Gw~Y~V~ 128 (137)
.+.+. ..++|++|.+++|+..+|.
T Consensus 68 ~v~l~G~~~~~~~ai~~L~~~~v~vEvl 95 (106)
T 3dhx_A 68 LTEMHGTQQDTQAAIAWLQEHHVKVEVL 95 (106)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHCCCEEEEe
Confidence 55553 3578999999999998875
No 76
>3ro8_A Endo-1,4-beta-xylanase; glycosyl hydrolase family 10, GH10, (beta/alpha)8 fold, XYLA hydrolase; 1.34A {Paenibacillus SP} PDB: 3rdk_A 4e4p_A
Probab=21.76 E-value=53 Score=27.05 Aligned_cols=22 Identities=14% Similarity=0.225 Sum_probs=19.7
Q ss_pred eeeeCCHHHHHHHHHHcCCcEE
Q 032597 105 GLSFDSKEAAREFAERHGWEYV 126 (137)
Q Consensus 105 ~L~F~SkE~AIayaek~Gw~Y~ 126 (137)
...|...+..++||++||+...
T Consensus 58 ~~~f~~aD~~v~~a~~ngi~vr 79 (341)
T 3ro8_A 58 NFTFTAADAMIDKVLAEGMKMH 79 (341)
T ss_dssp BCCCHHHHHHHHHHHHTTCEEE
T ss_pred ccchHHHHHHHHHHHhCCCEEE
Confidence 5789999999999999999864
No 77
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=21.64 E-value=50 Score=26.00 Aligned_cols=18 Identities=17% Similarity=0.421 Sum_probs=15.5
Q ss_pred CCHHHHHHHHHHcCCcEE
Q 032597 109 DSKEAAREFAERHGWEYV 126 (137)
Q Consensus 109 ~SkE~AIayaek~Gw~Y~ 126 (137)
..++++++||++||+++.
T Consensus 176 ar~~~l~~fA~~h~l~ii 193 (204)
T 1tks_A 176 MRLDDCIQFGKKHGIKII 193 (204)
T ss_dssp CBHHHHHHHHHHHTCCEE
T ss_pred CCHHHHHHHHHHcCCcEE
Confidence 467999999999999864
No 78
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=21.62 E-value=26 Score=29.70 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=17.7
Q ss_pred eeCCHHHHHHHHHHcCCcEEE
Q 032597 107 SFDSKEAAREFAERHGWEYVV 127 (137)
Q Consensus 107 ~F~SkE~AIayaek~Gw~Y~V 127 (137)
.|.+|++-++||+++|++|..
T Consensus 154 ~~~sK~EI~~yA~~~Gip~~~ 174 (413)
T 2nz2_A 154 RFKGRNDLMEYAKQHGIPIPV 174 (413)
T ss_dssp TCC-CHHHHHHHHHTTCCCCS
T ss_pred cCCCHHHHHHHHHHcCCCeec
Confidence 466999999999999999974
No 79
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1
Probab=21.58 E-value=30 Score=29.41 Aligned_cols=15 Identities=20% Similarity=0.521 Sum_probs=13.2
Q ss_pred HHHHHHcCCcEEEeC
Q 032597 115 REFAERHGWEYVVRK 129 (137)
Q Consensus 115 Iayaek~Gw~Y~V~~ 129 (137)
..||+++||+++|.+
T Consensus 136 ~r~ae~~g~k~ev~~ 150 (360)
T 2b3t_B 136 SRYAEARRWRVEIMS 150 (360)
T ss_dssp HHHHHHTTCCCCEEE
T ss_pred HHHHHHcCCeEEEEe
Confidence 479999999999875
No 80
>3sol_A Type II secretion pathway related protein; general secretory pathway, protein transport, pilotin; 1.90A {Escherichia coli}
Probab=21.27 E-value=43 Score=23.42 Aligned_cols=13 Identities=31% Similarity=0.619 Sum_probs=11.8
Q ss_pred HHHHHHHHcCCcE
Q 032597 113 AAREFAERHGWEY 125 (137)
Q Consensus 113 ~AIayaek~Gw~Y 125 (137)
.||.||+++||+-
T Consensus 38 ~a~~~A~~~gWD~ 50 (94)
T 3sol_A 38 VANRIAIGKGWQS 50 (94)
T ss_dssp HHHHHHHHTTCCS
T ss_pred HHHHHHHHcCCCh
Confidence 7999999999974
No 81
>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesi antimicrobial target, structure-based design, isomerase; 0.98A {Magnaporthe grisea} SCOP: d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A
Probab=21.20 E-value=51 Score=26.53 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=16.3
Q ss_pred eCCHHHHHHHHHHcCCcEE
Q 032597 108 FDSKEAAREFAERHGWEYV 126 (137)
Q Consensus 108 F~SkE~AIayaek~Gw~Y~ 126 (137)
-..++++++||++||+++.
T Consensus 193 mar~~~l~~fA~~h~L~ii 211 (233)
T 1k4i_A 193 MLRGDECVAFARRWGLKVC 211 (233)
T ss_dssp ECCHHHHHHHHHHTTCEEE
T ss_pred cCCHHHHHHHHHHcCCcEE
Confidence 4578999999999999864
No 82
>1s4d_A Uroporphyrin-III C-methyltransferase; tetrapyrrole biosynthesis, cobalamin, SAM, SAH, uroporphyrin methyltransferase; HET: SAH; 2.70A {Pseudomonas denitrificans} SCOP: c.90.1.1
Probab=21.16 E-value=64 Score=25.22 Aligned_cols=33 Identities=15% Similarity=0.189 Sum_probs=25.8
Q ss_pred cCccCCCCccCccCCceeeeCCHHHHHHHHHHcCCcEEEeC
Q 032597 89 MGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVRK 129 (137)
Q Consensus 89 MGWtsS~D~~sqv~~~~L~F~SkE~AIayaek~Gw~Y~V~~ 129 (137)
...-++|||+ -|++--+=+.+|+++|++++|..
T Consensus 95 Vv~L~~GDP~--------i~g~g~~l~~~l~~~gi~veviP 127 (280)
T 1s4d_A 95 VLRLKGGDPF--------VFGRGGEEALTLVEHQVPFRIVP 127 (280)
T ss_dssp EEEEESBCTT--------SSSSHHHHHHHHHTTTCCEEEEC
T ss_pred EEEEcCCCCc--------cccCHHHHHHHHHHCCCCEEEEc
Confidence 4455568886 47777777899999999999974
No 83
>2v6u_A Pterin-4A-carbinolamine dehydratase; lyase, enzyme; 1.6A {Toxoplasma gondii} PDB: 2v6s_A 2v6t_A*
Probab=20.94 E-value=59 Score=22.38 Aligned_cols=33 Identities=18% Similarity=0.350 Sum_probs=24.0
Q ss_pred CCCcCccCCCCccCccCCceeeeCCHHHHHHHHHH
Q 032597 86 NPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAER 120 (137)
Q Consensus 86 nPLMGWtsS~D~~sqv~~~~L~F~SkE~AIayaek 120 (137)
..|-||+-.+|+. .+ .-..+|++-.+|++|..+
T Consensus 19 ~~l~gW~~~~~~~-~i-~r~f~F~~f~~a~~F~~~ 51 (104)
T 2v6u_A 19 KTVPQWHLTDGHL-SI-KRKFQFSDFNEAWGFMSR 51 (104)
T ss_dssp TTSTTSEECGGGC-CE-EEEEECSSHHHHHHHHHH
T ss_pred hcCCCCeEeCCcC-eE-EEEEEeCCHHHHHHHHHH
Confidence 4677998877742 12 137899999999998654
No 84
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=20.57 E-value=84 Score=19.96 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=16.9
Q ss_pred eeeeCCHHHHHHHHHH-cCCcE
Q 032597 105 GLSFDSKEAAREFAER-HGWEY 125 (137)
Q Consensus 105 ~L~F~SkE~AIayaek-~Gw~Y 125 (137)
-+.|.+.|+|.+-.+. +|..+
T Consensus 74 fV~f~~~~~a~~A~~~l~g~~~ 95 (107)
T 3ulh_A 74 DVHFERKADALKAMKQYNGVPL 95 (107)
T ss_dssp EEEESSHHHHHHHHHHHTTCEE
T ss_pred EEEECCHHHHHHHHHHhCCCEe
Confidence 6899999999988875 77543
No 85
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=20.43 E-value=93 Score=18.62 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=16.4
Q ss_pred eeeeCCHHHHHHHHHH-cCCc
Q 032597 105 GLSFDSKEAAREFAER-HGWE 124 (137)
Q Consensus 105 ~L~F~SkE~AIayaek-~Gw~ 124 (137)
-+.|.+.|+|.+-.+. +|..
T Consensus 47 fV~f~~~~~a~~a~~~l~g~~ 67 (83)
T 3md1_A 47 FVSFTSQDDAQNAMDSMQGQD 67 (83)
T ss_dssp EEEESCHHHHHHHHHHHTTCE
T ss_pred EEEECCHHHHHHHHHHhcCCe
Confidence 6799999999988875 6654
No 86
>1ve2_A Uroporphyrin-III C-methyltransferase; heme, biosynthesis, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: c.90.1.1
Probab=20.35 E-value=80 Score=23.63 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=25.5
Q ss_pred CccCCCCccCccCCceeeeCCHHHHHHHHHHcCCcEEEeC
Q 032597 90 GWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVRK 129 (137)
Q Consensus 90 GWtsS~D~~sqv~~~~L~F~SkE~AIayaek~Gw~Y~V~~ 129 (137)
..-.+|||. -|++--.-+.+|+++|++++|..
T Consensus 82 ~~l~~GDP~--------i~~~~~~l~~~l~~~gi~v~viP 113 (235)
T 1ve2_A 82 ARLKGGDPM--------VFGRGGEEALALRRAGIPFEVVP 113 (235)
T ss_dssp EEEESBCTT--------SSTTHHHHHHHHHHHTCCEEEEC
T ss_pred EEEcCCCCC--------cccCHHHHHHHHHHCCCCEEEEC
Confidence 445678986 47788888888999999999864
No 87
>3kzf_A Carbamate kinase; arginine dihydrolase pathway, giardia LAMB target, transferase; 3.00A {Giardia lamblia atcc 50803}
Probab=20.22 E-value=23 Score=29.49 Aligned_cols=19 Identities=16% Similarity=0.302 Sum_probs=0.0
Q ss_pred eeCCHHHHHHHH-HHcCCcE
Q 032597 107 SFDSKEAAREFA-ERHGWEY 125 (137)
Q Consensus 107 ~F~SkE~AIaya-ek~Gw~Y 125 (137)
.|-|+|+|.+.+ +++||.|
T Consensus 136 ~~y~~~ea~~~~~~~~~~~~ 155 (317)
T 3kzf_A 136 RFYTEQEAKDLMAANPGKIL 155 (317)
T ss_dssp --------------------
T ss_pred CCCCHHHHHHHHHhccCCeE
Confidence 599999999998 9999987
Done!