BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032598
(137 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 212 bits (539), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 94/136 (69%), Positives = 114/136 (83%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
MIPTVGFNMRK+TKGNVTIKLWD+GGQPRFRSMWERYCR VSAIVY+VDAAD + + S+
Sbjct: 51 MIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASK 110
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
+ELH+LL KP L GIP+LVLGNK D P AL +++L+E+M L +I DRE+CCY ISCK
Sbjct: 111 NELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKD 170
Query: 121 NIDTVIDWLVKHSKSK 136
NID + WL++HSKS+
Sbjct: 171 NIDITLQWLIQHSKSR 186
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 211 bits (536), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 93/136 (68%), Positives = 113/136 (83%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
MIPTVGFNMRKVTKGNVTIK+WD+GGQPRFRSMWERYCR V+AIVY++DAAD + + SR
Sbjct: 51 MIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASR 110
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
+ELH+LL KP L GIP+LVLGNK D P AL ++ L+E+M L +I DRE+CCY ISCK
Sbjct: 111 NELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKD 170
Query: 121 NIDTVIDWLVKHSKSK 136
NID + WL++HSKS+
Sbjct: 171 NIDITLQWLIQHSKSR 186
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 208 bits (530), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 93/134 (69%), Positives = 112/134 (83%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
MIPTVGFNMRK+TKGNVTIKLWD+GGQPRFRSMWERYCR VSAIVY+VDAAD + + S+
Sbjct: 60 MIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASK 119
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
+ELH+LL KP L GIP+LVLGNK D P AL +++L+E+M L +I DRE+CCY ISCK
Sbjct: 120 NELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKD 179
Query: 121 NIDTVIDWLVKHSK 134
NID + WL++HSK
Sbjct: 180 NIDITLQWLIQHSK 193
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 104 bits (259), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 78/135 (57%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
IPT+GFN+ VT N+ ++WDLGGQ R W Y A++YVVD+ D D + +S+S
Sbjct: 31 IPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKS 90
Query: 62 ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTN 121
EL +L + L L+V NK D +A++ ++ +GL ++ DR+ + S T
Sbjct: 91 ELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANALGLPALKDRKWQIFKTSATKGTG 150
Query: 122 IDTVIDWLVKHSKSK 136
+D ++WLV+ KS+
Sbjct: 151 LDEAMEWLVETLKSR 165
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 103 bits (256), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 78/133 (58%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
IPT+GFN+ V N++ +WD+GGQ + R +W Y + AI++VVD+ D D + +R
Sbjct: 46 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEARE 105
Query: 62 ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTN 121
EL +L++ + LLV NK D P+A+S ++ E++GL++I +R+ C N
Sbjct: 106 ELMKMLNEDEMRNAILLVFANKHDLPQAMSISEVTEKLGLQTIKNRKWYCQTSCATNGDG 165
Query: 122 IDTVIDWLVKHSK 134
+ +DWL + K
Sbjct: 166 LYEGLDWLADNLK 178
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 101 bits (251), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 76/134 (56%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
IPT+GFN+ VT N+ ++WDLGG R W Y A++YVVD+ D D + +S+S
Sbjct: 33 IPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKS 92
Query: 62 ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTN 121
EL +L + L L+V NK D +A++ ++ +GL ++ DR+ + S T
Sbjct: 93 ELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTG 152
Query: 122 IDTVIDWLVKHSKS 135
+D ++WLV+ KS
Sbjct: 153 LDEAMEWLVETLKS 166
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 98.6 bits (244), Expect = 9e-22, Method: Composition-based stats.
Identities = 48/138 (34%), Positives = 77/138 (55%), Gaps = 6/138 (4%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
IPTVGFN+ VT NV +WD+GGQ + R +W Y +++VVD AD D + +R
Sbjct: 351 IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ 410
Query: 62 ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTN 121
ELH +++ + +L+ NK D P+A+ ++ E++GL I DR + + +T+
Sbjct: 411 ELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRN---WYVQPSCATS 467
Query: 122 IDTV---IDWLVKHSKSK 136
D + + WL + KSK
Sbjct: 468 GDGLYEGLTWLTSNYKSK 485
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 96.7 bits (239), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 75/136 (55%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
IPT+GFN+ V N++ +WD+GGQ + R +W Y + +++VVD+ D D + +R
Sbjct: 49 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD 108
Query: 62 ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTN 121
ELH +L++ L LLV NK D P A++ ++ +++GL S+ R +
Sbjct: 109 ELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 168
Query: 122 IDTVIDWLVKHSKSKS 137
+ +DWL + SK+
Sbjct: 169 LYEGLDWLSNNIASKA 184
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 96.3 bits (238), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 75/136 (55%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
IPT+GFN+ V N++ +WD+GGQ R RS+W Y R +++V+D+ D + +R
Sbjct: 46 IPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEARE 105
Query: 62 ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTN 121
+ +L++ L LV NK D PEA+S ++ E++GL SI +R +
Sbjct: 106 VMQRMLNEDELRNAVWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQSTCATSGEG 165
Query: 122 IDTVIDWLVKHSKSKS 137
+ ++WL + K++S
Sbjct: 166 LYEGLEWLSNNLKNQS 181
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 96.3 bits (238), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 71/134 (52%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
IPTVGFN+ VT NV +WD+GGQ + R +W Y +++VVD AD D + +R
Sbjct: 42 IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ 101
Query: 62 ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTN 121
ELH +++ + +L+ NK D P+A+ ++ E++GL I DR +
Sbjct: 102 ELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDG 161
Query: 122 IDTVIDWLVKHSKS 135
+ + WL + KS
Sbjct: 162 LYEGLTWLTSNYKS 175
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 96.3 bits (238), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 71/134 (52%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
IPTVGFN+ VT NV +WD+GGQ + R +W Y +++VVD AD D + +R
Sbjct: 41 IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ 100
Query: 62 ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTN 121
ELH +++ + +L+ NK D P+A+ ++ E++GL I DR +
Sbjct: 101 ELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDG 160
Query: 122 IDTVIDWLVKHSKS 135
+ + WL + KS
Sbjct: 161 LYEGLTWLTSNYKS 174
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 96.3 bits (238), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 71/134 (52%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
IPTVGFN+ VT NV +WD+GGQ + R +W Y +++VVD AD D + +R
Sbjct: 29 IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ 88
Query: 62 ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTN 121
ELH +++ + +L+ NK D P+A+ ++ E++GL I DR +
Sbjct: 89 ELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDG 148
Query: 122 IDTVIDWLVKHSKS 135
+ + WL + KS
Sbjct: 149 LYEGLTWLTSNYKS 162
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 95.9 bits (237), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 73/136 (53%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
IPT+GFN+ V N++ +WD+GGQ R RS+W Y R +++VVD+ D + +R
Sbjct: 46 IPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEARE 105
Query: 62 ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTN 121
+ +L++ L LV NK D PEA+S ++ E++GL SI +R +
Sbjct: 106 VMQRMLNEDELRNAAWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQATCATSGEG 165
Query: 122 IDTVIDWLVKHSKSKS 137
+ ++WL K+ +
Sbjct: 166 LYEGLEWLSNSLKNST 181
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 95.5 bits (236), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 73/136 (53%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
IPT+GFN+ V N++ +WD+GGQ R RS+W Y R +++VVD+ D + +R
Sbjct: 29 IPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEARE 88
Query: 62 ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTN 121
+ +L++ L LV NK D PEA+S ++ E++GL SI +R +
Sbjct: 89 VMQRMLNEDELRNAAWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQATCATSGEG 148
Query: 122 IDTVIDWLVKHSKSKS 137
+ ++WL K+ +
Sbjct: 149 LYEGLEWLSNSLKNST 164
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 95.1 bits (235), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 63/106 (59%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
IPTVGFN+ VT NV +WD+GGQ + R +W Y +++VVD AD D + +R
Sbjct: 29 IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ 88
Query: 62 ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDR 107
ELH +++ + +L+ NK D P+A+ ++ E++GL I DR
Sbjct: 89 ELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDR 134
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 69/134 (51%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
IPTVGFN+ VT NV +WD+GGQ + R +W Y +++VVD AD D + +R
Sbjct: 29 IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ 88
Query: 62 ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTN 121
ELH +++ +L+ NK D P+A ++ E++GL I DR +
Sbjct: 89 ELHRIINDREXRDAIILIFANKQDLPDAXKPHEIQEKLGLTRIRDRNWYVQPSCATSGDG 148
Query: 122 IDTVIDWLVKHSKS 135
+ + WL + KS
Sbjct: 149 LYEGLTWLTSNYKS 162
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 69/128 (53%)
Query: 3 PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSE 62
PT+GFN+ ++ N+ + +WDLGGQ R W Y +A+++VVD+ D D + + E
Sbjct: 48 PTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKE 107
Query: 63 LHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNI 122
LH +L + L LLV NK D+P ALS ++ +++ L + DR S I
Sbjct: 108 LHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGI 167
Query: 123 DTVIDWLV 130
+DWL+
Sbjct: 168 TEGLDWLI 175
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 93.2 bits (230), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 70/134 (52%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
IPTVGFN+ VT NV +WD+GG + R +W Y +++VVD AD D + +R
Sbjct: 32 IPTVGFNVETVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ 91
Query: 62 ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTN 121
ELH +++ + +L+ NK D P+A+ ++ E++GL I DR +
Sbjct: 92 ELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDG 151
Query: 122 IDTVIDWLVKHSKS 135
+ + WL + KS
Sbjct: 152 LYEGLTWLTSNYKS 165
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 93.2 bits (230), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 70/134 (52%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
IPTVGFN+ VT NV +WD+GG + R +W Y +++VVD AD D + +R
Sbjct: 31 IPTVGFNVETVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ 90
Query: 62 ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTN 121
ELH +++ + +L+ NK D P+A+ ++ E++GL I DR +
Sbjct: 91 ELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDG 150
Query: 122 IDTVIDWLVKHSKS 135
+ + WL + KS
Sbjct: 151 LYEGLTWLTSNYKS 164
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 92.8 bits (229), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 70/134 (52%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
IPTVGFN+ VT NV +WD+GG + R +W Y +++VVD AD D + +R
Sbjct: 42 IPTVGFNVETVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ 101
Query: 62 ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTN 121
ELH +++ + +L+ NK D P+A+ ++ E++GL I DR +
Sbjct: 102 ELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDG 161
Query: 122 IDTVIDWLVKHSKS 135
+ + WL + KS
Sbjct: 162 LYEGLTWLTSNYKS 175
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 91.7 bits (226), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 69/131 (52%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
IPT+GFN+ V N++ +WD+GGQ + R +W Y +++VVD+ D + + +R
Sbjct: 46 IPTIGFNVETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDARE 105
Query: 62 ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTN 121
ELH ++++ L +LV NK D P A+S ++ E++ L +I +R
Sbjct: 106 ELHRMINEEELKDAIILVFANKQDLPNAMSAAEVTEKLHLNTIRERNWFIQSTCATRGDG 165
Query: 122 IDTVIDWLVKH 132
+ DWL H
Sbjct: 166 LYEGFDWLTTH 176
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 89.7 bits (221), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 73/135 (54%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
IPT+GFN+ V N++ +WD+GGQ + R +W Y + +++VVD+ D + + +R
Sbjct: 29 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE 88
Query: 62 ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTN 121
EL +L++ L LLV NK D P A++ ++ +++GL S+ R +
Sbjct: 89 ELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDG 148
Query: 122 IDTVIDWLVKHSKSK 136
+ +DWL +++
Sbjct: 149 LYEGLDWLSNQLRNQ 163
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 89.7 bits (221), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 67/134 (50%)
Query: 3 PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSE 62
PT+GFN++ + + +WD+GGQ RS W Y + +++VVD+AD + + E
Sbjct: 46 PTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRE 105
Query: 63 LHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNI 122
L LL + L G LL+ NK D P ALS + E + L SI C S N+
Sbjct: 106 LQSLLVEERLAGATLLIFANKQDLPGALSSNAIREVLELDSIRSHHWCIQGCSAVTGENL 165
Query: 123 DTVIDWLVKHSKSK 136
IDWL+ S+
Sbjct: 166 LPGIDWLLDDISSR 179
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 89.4 bits (220), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 73/135 (54%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
IPT+GFN+ V N++ +WD+GGQ + R +W Y + +++VVD+ D + + +R
Sbjct: 45 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE 104
Query: 62 ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTN 121
EL +L++ L LLV NK D P A++ ++ +++GL S+ R +
Sbjct: 105 ELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDG 164
Query: 122 IDTVIDWLVKHSKSK 136
+ +DWL +++
Sbjct: 165 LYEGLDWLSNQLRNQ 179
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 89.4 bits (220), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 73/135 (54%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
IPT+GFN+ V N++ +WD+GGQ + R +W Y + +++VVD+ D + + +R
Sbjct: 46 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE 105
Query: 62 ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTN 121
EL +L++ L LLV NK D P A++ ++ +++GL S+ R +
Sbjct: 106 ELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDG 165
Query: 122 IDTVIDWLVKHSKSK 136
+ +DWL +++
Sbjct: 166 LYEGLDWLSNQLRNQ 180
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 89.0 bits (219), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 71/130 (54%)
Query: 8 NMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLL 67
N+ + N++ ++WDLGGQ R W Y A++YVVD+ D D + V++ EL+ LL
Sbjct: 57 NLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALL 116
Query: 68 SKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVID 127
+ L LL+ NK D P+A S+ ++ EQ+G+ SI +R S K + +D
Sbjct: 117 DEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMD 176
Query: 128 WLVKHSKSKS 137
WLV+ + +
Sbjct: 177 WLVERLREQG 186
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 89.0 bits (219), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 73/135 (54%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
IPT+GFN+ V N++ +WD+GGQ + R +W Y + +++VVD+ D + + +R
Sbjct: 194 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE 253
Query: 62 ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTN 121
EL +L++ L LLV NK D P A++ ++ +++GL S+ R +
Sbjct: 254 ELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDG 313
Query: 122 IDTVIDWLVKHSKSK 136
+ +DWL +++
Sbjct: 314 LYEGLDWLSNQLRNQ 328
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 89.0 bits (219), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 69/135 (51%), Gaps = 1/135 (0%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
IPT+GFN+ V N+ +WD+GGQ + R +W Y + +++VVD+ D + + S
Sbjct: 58 IPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESAD 117
Query: 62 ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTN 121
EL +L + L LLV NK D P A+ +L +++GL+ + R T
Sbjct: 118 ELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTG 177
Query: 122 IDTVIDWLVKHSKSK 136
+ +DWL H SK
Sbjct: 178 LYDGLDWL-SHELSK 191
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 89.0 bits (219), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 73/135 (54%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
IPT+GFN+ VT N+ ++WDLGG R W Y A++YVVD+ D D + +S+S
Sbjct: 36 IPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKS 95
Query: 62 ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTN 121
EL L + L L+V NK D +A + + +GL ++ DR+ + S T
Sbjct: 96 ELVAXLEEEELRKAILVVFANKQDXEQAXTSSEXANSLGLPALKDRKWQIFKTSATKGTG 155
Query: 122 IDTVIDWLVKHSKSK 136
+D +WLV+ KS+
Sbjct: 156 LDEAXEWLVETLKSR 170
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 89.0 bits (219), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 63/106 (59%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
IPT+GFN+ V N++ +WD+GGQ R RS+W Y +++VVD+ D + +R
Sbjct: 46 IPTIGFNVECVQYCNISFTVWDVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEARE 105
Query: 62 ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDR 107
+ +L++ L LV NK D PEA+S ++ E++GL SI +R
Sbjct: 106 VMQRMLNEDELCNAAWLVFANKQDLPEAMSAAEITEKLGLHSIRNR 151
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 88.6 bits (218), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 77/143 (53%), Gaps = 12/143 (8%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
+PT+ ++T +T +DLGG + R +W+ Y A++ IV++VD AD++ L S+
Sbjct: 51 VPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKE 110
Query: 62 ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMG------------LKSITDREV 109
EL L++ ++ +P+L+LGNKID+PEA+S+E L E G LK + R +
Sbjct: 111 ELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPL 170
Query: 110 CCYMISCKNSTNIDTVIDWLVKH 132
+M S W+ ++
Sbjct: 171 EVFMCSVLKRQGYGEGFRWMAQY 193
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 88.6 bits (218), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 77/143 (53%), Gaps = 12/143 (8%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
+PT+ ++T +T +DLGG + R +W+ Y A++ IV++VD AD++ L S+
Sbjct: 54 VPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKE 113
Query: 62 ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMG------------LKSITDREV 109
EL L++ ++ +P+L+LGNKID+PEA+S+E L E G LK + R +
Sbjct: 114 ELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPL 173
Query: 110 CCYMISCKNSTNIDTVIDWLVKH 132
+M S W+ ++
Sbjct: 174 EVFMCSVLKRQGYGEGFRWMAQY 196
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 77/143 (53%), Gaps = 12/143 (8%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
+PT+ ++T +T +DLGG + R +W+ Y A++ IV++VD AD++ L S+
Sbjct: 45 VPTLHPTSEELTIAGMTFTTFDLGGGIQARRVWKNYLPAINGIVFLVDCADHERLLESKE 104
Query: 62 ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMG------------LKSITDREV 109
EL L++ ++ +P+L+LGNKID+PEA+S+E L E G LK + R +
Sbjct: 105 ELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPL 164
Query: 110 CCYMISCKNSTNIDTVIDWLVKH 132
+M S W+ ++
Sbjct: 165 EVFMCSVLKRQGYGEGFRWMAQY 187
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 86.7 bits (213), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 68/128 (53%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
IPT+GFN+ V N+ +WD+GGQ R R +W+ Y + +++VVD+ D + +
Sbjct: 46 IPTIGFNVETVEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVAD 105
Query: 62 ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTN 121
EL +L L LL+ NK D P A++ ++ +++GL+S+ +R T
Sbjct: 106 ELQKMLLVDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTG 165
Query: 122 IDTVIDWL 129
+ +DWL
Sbjct: 166 LYEGLDWL 173
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 86.3 bits (212), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 72/135 (53%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
IPT+GFN+ V N++ +WD+GG + R +W Y + +++VVD+ D + + +R
Sbjct: 31 IPTIGFNVETVEYKNISFTVWDVGGLDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE 90
Query: 62 ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTN 121
EL +L++ L LLV NK D P A++ ++ +++GL S+ R +
Sbjct: 91 ELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDG 150
Query: 122 IDTVIDWLVKHSKSK 136
+ +DWL +++
Sbjct: 151 LYEGLDWLSNQLRNQ 165
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 69/136 (50%), Gaps = 4/136 (2%)
Query: 3 PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSE 62
PT+GFN++ + + +WD+GGQ RS W Y + +++VVD+AD + + E
Sbjct: 48 PTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRE 107
Query: 63 LHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNI 122
L LL + L G LL+ NK D P ALS + E + L SI R + C T
Sbjct: 108 LQSLLVEERLAGATLLIFANKQDLPGALSXNAIQEALELDSI--RSHHWRIQGCSAVTGE 165
Query: 123 DTV--IDWLVKHSKSK 136
D + IDWL+ S+
Sbjct: 166 DLLPGIDWLLDDISSR 181
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 68/136 (50%), Gaps = 4/136 (2%)
Query: 3 PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSE 62
PT+GFN++ + + +WD+GGQ RS W Y + +++VVD+AD + E
Sbjct: 48 PTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRXQDCQRE 107
Query: 63 LHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNI 122
L LL + L G LL+ NK D P ALS + E + L SI R + C T
Sbjct: 108 LQSLLVEERLAGATLLIFANKQDLPGALSXNAIQEALELDSI--RSHHWRIQGCSAVTGE 165
Query: 123 DTV--IDWLVKHSKSK 136
D + IDWL+ S+
Sbjct: 166 DLLPGIDWLLDDISSR 181
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 83.2 bits (204), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 69/136 (50%), Gaps = 4/136 (2%)
Query: 3 PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSE 62
PT+GFN++ + + +WD+GGQ RS W Y + +++VVD+AD + + E
Sbjct: 48 PTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRE 107
Query: 63 LHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNI 122
L LL + L G LL+ NK D P ALS + E + L SI R + C T
Sbjct: 108 LQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSI--RSHHWRIQGCSAVTGE 165
Query: 123 DTV--IDWLVKHSKSK 136
D + IDWL+ S+
Sbjct: 166 DLLPGIDWLLDDISSR 181
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 83.2 bits (204), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 77/143 (53%), Gaps = 12/143 (8%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
+PT+ ++T +T +DLGG + R +W+ Y A++ IV++VD AD+ L S+
Sbjct: 64 VPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKV 123
Query: 62 ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMG------------LKSITDREV 109
EL+ L++ +++ +P+L+LGNKID+ +A+S+E L E G LK + R +
Sbjct: 124 ELNALMTDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPM 183
Query: 110 CCYMISCKNSTNIDTVIDWLVKH 132
+M S WL ++
Sbjct: 184 EVFMCSVLKRQGYGEGFRWLSQY 206
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 68/136 (50%), Gaps = 4/136 (2%)
Query: 3 PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSE 62
PT+GFN++ + + +WD+GG RS W Y + +++VVD+AD + + E
Sbjct: 31 PTLGFNIKTLEHRGFKLNIWDVGGLKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRE 90
Query: 63 LHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNI 122
L LL + L G LL+ NK D P ALS + E + L SI R + C T
Sbjct: 91 LQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSI--RSHHWRIQGCSAVTGE 148
Query: 123 DTV--IDWLVKHSKSK 136
D + IDWL+ S+
Sbjct: 149 DLLPGIDWLLDDISSR 164
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 79.3 bits (194), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 75/131 (57%), Gaps = 2/131 (1%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
++PT+GF++ K +++ ++D+ GQ R+R++WE Y + AI++V+D++D + V++
Sbjct: 51 ILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAK 110
Query: 61 SELHDLLSKPSLNG--IPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKN 118
EL LL+ P + IP+L NK+D +A++ + + + L++I D+
Sbjct: 111 EELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIK 170
Query: 119 STNIDTVIDWL 129
+ +DWL
Sbjct: 171 GEGLQEGVDWL 181
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 72/145 (49%), Gaps = 8/145 (5%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
+ TVG+N+ KG V ++D+GG +FR +WE Y + A+++VVD++D+ L V +
Sbjct: 47 ITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVK 106
Query: 61 SELHDLLSK-------PSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSI-TDREVCCY 112
SE+ +L P +P L NK+D A + +L+E + L ++ D +
Sbjct: 107 SEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIF 166
Query: 113 MISCKNSTNIDTVIDWLVKHSKSKS 137
+ T + WL + + +S
Sbjct: 167 ASNGLKGTGVHEGFSWLQETASRQS 191
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 7/137 (5%)
Query: 3 PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSE 62
PT ++ GN+ +DLGG + R +W+ Y V+ IV++VDAAD + +R E
Sbjct: 31 PTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVE 90
Query: 63 LHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSIT-------DREVCCYMIS 115
L L + L +P ++LGNKID P A+S+ +L +GL + T R V +M S
Sbjct: 91 LDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCS 150
Query: 116 CKNSTNIDTVIDWLVKH 132
WL ++
Sbjct: 151 VVMRNGYLEAFQWLSQY 167
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 7/137 (5%)
Query: 3 PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSE 62
PT ++ GN+ +DLGG + R +W+ Y V+ IV++VDAAD + +R E
Sbjct: 53 PTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVE 112
Query: 63 LHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSIT-------DREVCCYMIS 115
L L + L +P ++LGNKID P A+S+ +L +GL + T R V +M S
Sbjct: 113 LDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCS 172
Query: 116 CKNSTNIDTVIDWLVKH 132
WL ++
Sbjct: 173 VVMRNGYLEAFQWLSQY 189
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 4/115 (3%)
Query: 3 PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSE 62
PT+G N+ ++ N +WD+GGQ RS W Y ++ VVD+ D + + V+R E
Sbjct: 46 PTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREE 105
Query: 63 LHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDR----EVCCYM 113
L+ +L+ L LL+ NK D E ++ ++ + + L SI D + CC +
Sbjct: 106 LYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCAL 160
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 4/115 (3%)
Query: 3 PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSE 62
PT+G N+ ++ N +WD+GGQ RS W Y ++ VVD+ D + + V+R E
Sbjct: 46 PTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREE 105
Query: 63 LHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDR----EVCCYM 113
L+ +L+ L LL+ NK D E ++ ++ + + L SI D + CC +
Sbjct: 106 LYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCAL 160
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 4/115 (3%)
Query: 3 PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSE 62
PT+G N+ ++ N +WD+GGQ RS W Y ++ VVD+ D + + V+R E
Sbjct: 52 PTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREE 111
Query: 63 LHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDR----EVCCYM 113
L+ +L+ L LL+ NK D E ++ ++ + + L SI D + CC +
Sbjct: 112 LYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCAL 166
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 4/115 (3%)
Query: 3 PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSE 62
PT+G N+ ++ N +WD+GGQ RS W Y ++ VVD+ D + + V+R E
Sbjct: 51 PTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREE 110
Query: 63 LHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDR----EVCCYM 113
L+ +L+ L LL+ NK D E ++ ++ + + L SI D + CC +
Sbjct: 111 LYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCAL 165
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 4/115 (3%)
Query: 3 PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSE 62
PT+G N+ ++ N +WD+GGQ RS W Y I+ VVD+ D + L +++ E
Sbjct: 46 PTIGSNVEEIVVKNTHFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEE 105
Query: 63 LHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDR----EVCCYM 113
L+ +L+ L +L+ NK D ++ ++ + + L SI D + CC +
Sbjct: 106 LYRMLAHEDLRKAAVLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCCAL 160
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 67/136 (49%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
+ PT GFN++ V + +WD+GGQ + R W Y ++YV+D+AD +
Sbjct: 45 ITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETG 104
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
EL +LL + L+ +P+L+ NK D A ++ E + L +I DR S
Sbjct: 105 QELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGE 164
Query: 121 NIDTVIDWLVKHSKSK 136
+ ++W+ K+ +K
Sbjct: 165 GVQDGMNWVCKNVNAK 180
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 67/136 (49%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
+ PT GFN++ V + +WD+GGQ + R W Y ++YV+D+AD +
Sbjct: 44 ITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETG 103
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
EL +LL + L+ +P+L+ NK D A ++ E + L +I DR S
Sbjct: 104 QELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGE 163
Query: 121 NIDTVIDWLVKHSKSK 136
+ ++W+ K+ +K
Sbjct: 164 GVQDGMNWVCKNVNAK 179
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 65/132 (49%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
+ PT GFN++ V + +WD+GGQ + R W Y ++YV+D+AD +
Sbjct: 32 ITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETG 91
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
EL +LL + L+ +P+L+ NK D A ++ E + L +I DR S
Sbjct: 92 QELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGE 151
Query: 121 NIDTVIDWLVKH 132
+ ++W+ K+
Sbjct: 152 GVQDGMNWVCKN 163
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 64/132 (48%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
+ PT GFN++ V + +WD+GG + R W Y ++YV+D+AD +
Sbjct: 32 ITPTQGFNIKSVQSQGFKLNVWDIGGLRKIRPYWRSYFENTDILIYVIDSADRKRFEETG 91
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
EL +LL + L+ +P+L+ NK D A ++ E + L +I DR S
Sbjct: 92 QELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGE 151
Query: 121 NIDTVIDWLVKH 132
+ ++W+ K+
Sbjct: 152 GVQDGMNWVCKN 163
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 65/124 (52%), Gaps = 12/124 (9%)
Query: 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD---AADYDNLPVSRSEL--HDLLSKPS 71
T+++WD GQ RF+S+ + R V V D A+ ++N+ R E H ++ P
Sbjct: 58 ATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPE 117
Query: 72 LNGIPLLVLGNKIDKPEA--LSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWL 129
P ++LGNKID E+ + E +++ KS+ D + ++ S KN+ N+DT + +
Sbjct: 118 T--FPFVILGNKIDAEESKKIVSEKSAQELA-KSLGD--IPLFLTSAKNAINVDTAFEEI 172
Query: 130 VKHS 133
+ +
Sbjct: 173 ARSA 176
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 24/149 (16%)
Query: 1 MIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDA---ADY 53
I TVG + R V V +++WD GQ RFRS+ Y R A++ + D A +
Sbjct: 40 FISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASF 99
Query: 54 DNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKED---LMEQMGLKSITDRE 108
DN+ +E+H+ + + + L++LGNK+D + +ED L ++ GL +
Sbjct: 100 DNIQAWLTEIHEY----AQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFME--- 152
Query: 109 VCCYMISCKNSTNIDTVIDWLVKHSKSKS 137
S K N+D + K K +S
Sbjct: 153 -----TSAKTGLNVDLAFTAIAKELKRRS 176
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 11/131 (8%)
Query: 3 PTVG--FNMRKVTKGNVTIK--LWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPV 58
PT+G F ++VT T+K +WD GQ RF S+ Y R A + V D +
Sbjct: 34 PTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIK 93
Query: 59 SR---SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMIS 115
+R ELH+ SK I + ++GNKID + + + + G K ++ + + S
Sbjct: 94 ARHWVKELHEQASKD----IIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETS 149
Query: 116 CKNSTNIDTVI 126
K N++ V
Sbjct: 150 AKTGENVNDVF 160
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 67/144 (46%), Gaps = 18/144 (12%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLP 57
I T+G F +R ++ N T+KL WD GQ RFR++ Y R I+ V D D D+
Sbjct: 39 ISTIGVDFKIRTISLENKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFD 98
Query: 58 VSRSELHDLLSKPSLNGIPLLVLGNKID---KPEALSKE--DLMEQMGLKSITDREVCCY 112
+ + + + + ++ + L++GNK D K S E +L + G+K I
Sbjct: 99 NVKQWIQE-IDRYAMENVNKLLVGNKCDLVSKRVVTSDEGRELADSHGIKFIE------- 150
Query: 113 MISCKNSTNIDTVIDWLVKHSKSK 136
S KN+ N++ + K +
Sbjct: 151 -TSAKNAYNVEQAFHTMAGEIKKR 173
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLP 57
I T+G F +R + TIKL WD GQ RFR++ Y R I+ V D D ++
Sbjct: 39 ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYA 98
Query: 58 VSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYM-ISC 116
+ L ++ S N LLV GNK D L+ + +++ K D ++ S
Sbjct: 99 NVKQWLQEIDRYASENVNKLLV-GNKSD----LTTKKVVDNTTAKEFADSLGIPFLETSA 153
Query: 117 KNSTNID 123
KN+TN++
Sbjct: 154 KNATNVE 160
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLP 57
I T+G F +R + TIKL WD GQ RFR++ Y R I+ V D D ++
Sbjct: 39 ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYA 98
Query: 58 VSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYM-ISC 116
+ L ++ S N LLV GNK D L+ + +++ K D ++ S
Sbjct: 99 NVKQWLQEIDRYASENVNKLLV-GNKSD----LTTKKVVDNTTAKEFADSLGIPFLETSA 153
Query: 117 KNSTNID 123
KN+TN++
Sbjct: 154 KNATNVE 160
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLP 57
I T+G F +R + TIKL WD GQ RFR++ Y R I+ V D D ++
Sbjct: 29 ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFN 88
Query: 58 VSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYM-ISC 116
+ L ++ S N LLV GNK D L+ + +++ K D ++ S
Sbjct: 89 NVKQWLQEIDRYASENVNKLLV-GNKCD----LTTKKVVDYTTAKEFADSLGIPFLETSA 143
Query: 117 KNSTNID 123
KN+TN++
Sbjct: 144 KNATNVE 150
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLP 57
I T+G F +R + TIKL WD GQ RFR++ Y R I+ V D D ++
Sbjct: 36 ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFN 95
Query: 58 VSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYM-ISC 116
+ L ++ S N LLV GNK D L+ + +++ K D ++ S
Sbjct: 96 NVKQWLQEIDRYASENVNKLLV-GNKCD----LTTKKVVDYTTAKEFADSLGIPFLETSA 150
Query: 117 KNSTNID 123
KN+TN++
Sbjct: 151 KNATNVE 157
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLP 57
I T+G F +R + TIKL WD GQ RFR++ Y R I+ V D D ++
Sbjct: 36 ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFN 95
Query: 58 VSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYM-ISC 116
+ L ++ S N LLV GNK D L+ + +++ K D ++ S
Sbjct: 96 NVKQWLQEIDRYASENVNKLLV-GNKCD----LTTKKVVDYTTAKEFADSLGIPFLETSA 150
Query: 117 KNSTNID 123
KN+TN++
Sbjct: 151 KNATNVE 157
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 10/127 (7%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLP 57
I T+G F +R + TIKL WD GQ RFR++ Y R I+ V D D ++
Sbjct: 63 ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFN 122
Query: 58 VSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYM-ISC 116
+ L ++ S N + L++GNK D L+ + +++ K D ++ S
Sbjct: 123 NVKQWLQEIDRYASEN-VNKLLVGNKCD----LTTKKVVDYTTAKEFADSLGIPFLETSA 177
Query: 117 KNSTNID 123
KN+TN++
Sbjct: 178 KNATNVE 184
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLP 57
I T+G F +R + TIKL WD GQ RFR++ Y R I+ V D D ++
Sbjct: 55 ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFN 114
Query: 58 VSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYM-ISC 116
+ L ++ S N LLV GNK D L+ + +++ K D ++ S
Sbjct: 115 NVKQWLQEIDRYASENVNKLLV-GNKCD----LTTKKVVDYTTAKEFADSLGIPFLETSA 169
Query: 117 KNSTNID 123
KN+TN++
Sbjct: 170 KNATNVE 176
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 10/127 (7%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLP 57
I T+G F +R + TIKL WD GQ RFR++ Y R I+ V D D ++
Sbjct: 46 ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFN 105
Query: 58 VSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYM-ISC 116
+ L ++ S N + L++GNK D L+ + +++ K D ++ S
Sbjct: 106 NVKQWLQEIDRYASEN-VNKLLVGNKCD----LTTKKVVDYTTAKEFADSLGIPFLETSA 160
Query: 117 KNSTNID 123
KN+TN++
Sbjct: 161 KNATNVE 167
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLP 57
I T+G F +R + TIKL WD GQ RFR++ Y R I+ V D D ++
Sbjct: 46 ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFN 105
Query: 58 VSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYM-ISC 116
+ L ++ S N LLV GNK D L+ + +++ K D ++ S
Sbjct: 106 NVKQWLQEIDRYASENVNKLLV-GNKCD----LTTKKVVDYTTAKEFADSLGIPFLETSA 160
Query: 117 KNSTNID 123
KN+TN++
Sbjct: 161 KNATNVE 167
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 12/106 (11%)
Query: 4 TVGFNMRK----VTKGNVTIKLWDLGGQPRFR-SMWERYCRAVSAIVYVVD---AADYDN 55
T+G + R+ + + I+LWD GQ RFR SM + Y R V A+V+V D A + +
Sbjct: 61 TIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHS 120
Query: 56 LPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-KEDLMEQMG 100
LP E L N IP +++GNK D A+ DL ++
Sbjct: 121 LPAWIEECKQHLLA---NDIPRILVGNKCDLRSAIQVPTDLAQKFA 163
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 60/130 (46%), Gaps = 14/130 (10%)
Query: 4 TVGFNMRK----VTKGNVTIKLWDLGGQPRFR-SMWERYCRAVSAIVYVVD---AADYDN 55
T+G + R+ + + I+LWD GQ RFR SM + Y R V A+V+V D A + +
Sbjct: 52 TIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHS 111
Query: 56 LPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMIS 115
LP E L N IP +++GNK D A+ + Q K + + S
Sbjct: 112 LPAWIEECKQHLLA---NDIPRILVGNKCDLRSAIQVPTDLAQ---KFADTHSMPLFETS 165
Query: 116 CKNSTNIDTV 125
KN + D V
Sbjct: 166 AKNPNDNDHV 175
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 63/135 (46%), Gaps = 19/135 (14%)
Query: 2 IPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLP 57
I T+G + + ++ V +++WD GQ RFR++ Y R ++ V D ++
Sbjct: 39 ITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFV 98
Query: 58 VSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKED---LMEQMGLKSITDREVCCY 112
+ LH++ + + + +++GNK D PE + ED QMG++ +
Sbjct: 99 NVKRWLHEI--NQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQ--------LF 148
Query: 113 MISCKNSTNIDTVID 127
S K + N++ + +
Sbjct: 149 ETSAKENVNVEEMFN 163
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 60/127 (47%), Gaps = 10/127 (7%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLP 57
I T+G F +R + TIKL WD GQ RFR++ Y R I+ V D D ++
Sbjct: 38 ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFN 97
Query: 58 VSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYM-ISC 116
+ L ++ S N LLV G K D L+ + +++ K D ++ S
Sbjct: 98 NVKQWLQEIDRYASENVNKLLV-GIKCD----LTTKKVVDYTTAKEFADSLGIPFLETSA 152
Query: 117 KNSTNID 123
KN+TN++
Sbjct: 153 KNATNVE 159
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLP 57
I T+G F +R + TIKL WD GQ RFR++ Y R I+ V D D ++
Sbjct: 28 ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFN 87
Query: 58 VSRSELHDLLSKPSLNGIPLLVLGNKID 85
+ L ++ S N LLV GNK D
Sbjct: 88 NVKQWLQEIDRYASENVNKLLV-GNKCD 114
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 8/140 (5%)
Query: 1 MIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNL 56
I T+G F +R + IKL WD GQ RFR++ Y R I+ V D + +
Sbjct: 35 FISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSF 94
Query: 57 PVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISC 116
R+ + ++ S + + ++LGNK D + K + ++ G K D + S
Sbjct: 95 DNIRNWIRNIEEHASAD-VEKMILGNKCDVND---KRQVSKERGEKLALDYGIKFMETSA 150
Query: 117 KNSTNIDTVIDWLVKHSKSK 136
K + N++ L + K+K
Sbjct: 151 KANINVENAFFTLARDIKAK 170
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 8/140 (5%)
Query: 1 MIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNL 56
I T+G F +R + IKL WD GQ RFR++ Y R I+ V D + +
Sbjct: 37 FISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSF 96
Query: 57 PVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISC 116
R+ + ++ S + + ++LGNK D + K + ++ G K D + S
Sbjct: 97 DNIRNWIRNIEEHASAD-VEKMILGNKCDVND---KRQVSKERGEKLALDYGIKFMETSA 152
Query: 117 KNSTNIDTVIDWLVKHSKSK 136
K + N++ L + K+K
Sbjct: 153 KANINVENAFFTLARDIKAK 172
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 15/129 (11%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD---AADYDNLP 57
MI TV N KV +++WD GQ RFRS+ + Y R+ +A++ D + LP
Sbjct: 64 MIKTVEINGEKVK-----LQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLP 118
Query: 58 VSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCK 117
E+ S N + +++GNKID E + ++ +Q + +++ S K
Sbjct: 119 EWLREIEQYAS----NKVITVLVGNKIDLAE---RREVSQQRAEEFSEAQDMYYLETSAK 171
Query: 118 NSTNIDTVI 126
S N++ +
Sbjct: 172 ESDNVEKLF 180
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 28/144 (19%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
I TV N +KV ++LWD GQ RFR++ Y R I+ V D D + +
Sbjct: 42 IKTVDINGKKVK-----LQLWDTAGQERFRTITTAYYRGAXGIILVYDVTD-ERTFTNIK 95
Query: 62 ELHDLLSKPSLNGIPLLVLGNK---------IDKPEALSKEDLMEQMGLKSITDREVCCY 112
+ +++ + + LL++GNK D+ EAL+KE +G+ I
Sbjct: 96 QWFKTVNEHANDEAQLLLVGNKSDXETRVVTADQGEALAKE-----LGIPFIES------ 144
Query: 113 MISCKNSTNIDTVIDWLVKHSKSK 136
S KN N++ + L K + K
Sbjct: 145 --SAKNDDNVNEIFFTLAKLIQEK 166
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 15/121 (12%)
Query: 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD---YDNLPVSRSELHDLLSKPSL 72
+ +++WD GQ RF S+ Y R+ I+ V D +D+LP + ++ K +
Sbjct: 74 KIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLP----KWMKMIDKYAS 129
Query: 73 NGIPLLVLGNKIDKPEALSKEDLMEQMGLK---SITDREVCCYMISCKNSTNIDTVIDWL 129
LL++GNK+D + ++ Q G K IT C S K++ N+D + L
Sbjct: 130 EDAELLLVGNKLD---CETDREITRQQGEKFAQQITGMRFC--EASAKDNFNVDEIFLKL 184
Query: 130 V 130
V
Sbjct: 185 V 185
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 28/144 (19%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
I TV N +KV ++LWD GQ RFR++ Y R I+ V D D + +
Sbjct: 59 IKTVDINGKKVK-----LQLWDTAGQERFRTITTAYYRGAMGIILVYDVTD-ERTFTNIK 112
Query: 62 ELHDLLSKPSLNGIPLLVLGNK---------IDKPEALSKEDLMEQMGLKSITDREVCCY 112
+ +++ + + LL++GNK D+ EAL+KE +G+ I
Sbjct: 113 QWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKE-----LGIPFIES------ 161
Query: 113 MISCKNSTNIDTVIDWLVKHSKSK 136
S KN N++ + L K + K
Sbjct: 162 --SAKNDDNVNEIFFTLAKLIQEK 183
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 28/144 (19%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
I TV N +KV ++LWD GQ RFR++ Y R I+ V D D + +
Sbjct: 46 IKTVDINGKKVK-----LQLWDTAGQERFRTITTAYYRGAMGIILVYDVTD-ERTFTNIK 99
Query: 62 ELHDLLSKPSLNGIPLLVLGNK---------IDKPEALSKEDLMEQMGLKSITDREVCCY 112
+ +++ + + LL++GNK D+ EAL+KE +G+ I
Sbjct: 100 QWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKE-----LGIPFIES------ 148
Query: 113 MISCKNSTNIDTVIDWLVKHSKSK 136
S KN N++ + L K + K
Sbjct: 149 --SAKNDDNVNEIFFTLAKLIQEK 170
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 5/121 (4%)
Query: 5 VGFNMR--KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSE 62
V F M+ ++ V +++WD GQ RFR++ + Y R+ + + D +
Sbjct: 64 VDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHW 123
Query: 63 LHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNI 122
+ D+ N + LL+ GNK D E L + L E L D +C S K+S+N+
Sbjct: 124 IEDVRKYAGSNIVQLLI-GNKSDLSE-LREVSLAEAQSLAEHYDI-LCAIETSAKDSSNV 180
Query: 123 D 123
+
Sbjct: 181 E 181
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 1 MIPTVGFNMRKVT---KGN-VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNL 56
+ T+G + + T GN + +WD GQ RFR++ Y R ++ V D D
Sbjct: 44 LAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTF 103
Query: 57 PVSRSELHDLLSKPSLNGIPLLVLGNKIDK 86
+ L++L + + N I ++GNKIDK
Sbjct: 104 VKLDNWLNELETYCTRNDIVNXLVGNKIDK 133
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 14 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLN 73
+G V ++LWD GQ RFRS+ Y R +A + V D + + + + D+L++ +
Sbjct: 47 EGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKD 106
Query: 74 GIPLLVLGNKID 85
I LV GNK D
Sbjct: 107 VIIALV-GNKTD 117
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 28/144 (19%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
I TV N +KV +++WD GQ RFR++ Y R I+ V D D + +
Sbjct: 42 IKTVDINGKKVK-----LQIWDTAGQERFRTITTAYYRGAXGIILVYDITD-ERTFTNIK 95
Query: 62 ELHDLLSKPSLNGIPLLVLGNK---------IDKPEALSKEDLMEQMGLKSITDREVCCY 112
+ +++ + + LL++GNK D+ EAL+KE +G+ I
Sbjct: 96 QWFKTVNEHANDEAQLLLVGNKSDXETRVVTADQGEALAKE-----LGIPFIES------ 144
Query: 113 MISCKNSTNIDTVIDWLVKHSKSK 136
S KN N++ + L K + K
Sbjct: 145 --SAKNDDNVNEIFFTLAKLIQEK 166
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAA---DYDNLPVSRSELHDLLSKPSLN 73
VT+++WD GQ RF+S+ + R V V D + L R E S
Sbjct: 57 VTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPE 116
Query: 74 GIPLLVLGNKID 85
P +VLGNKID
Sbjct: 117 NFPFVVLGNKID 128
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 6/116 (5%)
Query: 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76
V ++WD GQ R+ S+ Y R A + V D + D +++ + +L + S N I
Sbjct: 54 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPN-IV 112
Query: 77 LLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVK 131
+ + GNK D L+ + +E ++ D +M S K + N++ + + K
Sbjct: 113 IALAGNKAD----LASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAK 164
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 28/144 (19%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
I TV N +KV +++WD GQ RFR++ Y R I+ V D D + +
Sbjct: 42 IKTVDINGKKVK-----LQIWDTAGQERFRTITTAYYRGAMGIILVYDITD-ERTFTNIK 95
Query: 62 ELHDLLSKPSLNGIPLLVLGNK---------IDKPEALSKEDLMEQMGLKSITDREVCCY 112
+ +++ + + LL++GNK D+ EAL+KE +G+ I
Sbjct: 96 QWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKE-----LGIPFIES------ 144
Query: 113 MISCKNSTNIDTVIDWLVKHSKSK 136
S KN N++ + L K + K
Sbjct: 145 --SAKNDDNVNEIFFTLAKLIQEK 166
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAA---DYDNLPVSRSELHDLLSKPSLN 73
VT+++WD GQ RF+S+ + R V V D + L R E S
Sbjct: 57 VTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPE 116
Query: 74 GIPLLVLGNKID 85
P +VLGNKID
Sbjct: 117 NFPFVVLGNKID 128
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 7/117 (5%)
Query: 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGI 75
N+ +WD GQ R+ S+ Y R + + V D ++ + L +++ ++ L K S N I
Sbjct: 92 NIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQL--KISSNYI 149
Query: 76 PLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 132
+LV NKIDK + + D++E K D + S K TNI + L +
Sbjct: 150 IILV-ANKIDKNKF--QVDILEVQ--KYAQDNNLLFIQTSAKTGTNIKNIFYMLAEE 201
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 6/116 (5%)
Query: 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76
V ++WD GQ R+ S+ Y R A + V D + D +++ + +L + S N I
Sbjct: 52 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPN-IV 110
Query: 77 LLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVK 131
+ + GNK D L+ + +E ++ D +M S K + N++ + + K
Sbjct: 111 IALAGNKAD----LASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAK 162
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLP 57
I T+G F ++ V T+KL WD GQ RFR++ Y R I+ V D D ++
Sbjct: 38 ISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFN 97
Query: 58 VSRSELHDLLSKPSLNGIPLLVLGNKID 85
+ L ++ + + LLV GNK D
Sbjct: 98 GVKMWLQEIDRYATSTVLKLLV-GNKCD 124
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAA---DYDNLPVSRSELHDLLSKPSLN 73
VT+++WD GQ RF+S+ + R V V D + L R E S
Sbjct: 57 VTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPE 116
Query: 74 GIPLLVLGNKID 85
P +VLGNKID
Sbjct: 117 NFPFVVLGNKID 128
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLP 57
I T+G F ++ V T+KL WD GQ RFR++ Y R I+ V D D ++
Sbjct: 38 ISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFN 97
Query: 58 VSRSELHDLLSKPSLNGIPLLVLGNKID 85
+ L ++ + + LLV GNK D
Sbjct: 98 GVKMWLQEIDRYATSTVLKLLV-GNKCD 124
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 8/119 (6%)
Query: 17 VTIKLWDLGGQPRFRSMWERYCRAVSA---IVYVVDAADYDNLPVSRSELHDLLSKPSLN 73
VT+++WD GQ RFRS+ + R V D+ + NL + E
Sbjct: 60 VTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPE 119
Query: 74 GIPLLVLGNKID-KPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 131
P ++LGNK D K +S E+ Q K D + S K+STN+ + V+
Sbjct: 120 SFPFVILGNKTDIKERQVSTEEA--QAWCKDNGDYPY--FETSAKDSTNVAAAFEEAVR 174
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 6/118 (5%)
Query: 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVY---VVDAADYDNLPVSRSELHDLLSKPSLN 73
VT+++WD GQ RFRS+ + R + V D+ + NL + E
Sbjct: 58 VTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPE 117
Query: 74 GIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 131
P ++LGNKID E ++ E+ + + + S K++TN+ + V+
Sbjct: 118 SFPFVILGNKIDISE---RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVR 172
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 5 VGFNMRK-VTKGNVTI-KLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSE 62
V F M+ + G T+ +LWD GQ RFRS+ + Y R ++ + D + R E
Sbjct: 63 VDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIR-E 121
Query: 63 LHDLLSKPSLNGIPLLVLGNKIDKPEALSKE 93
D++ + +P++++GNK D + + E
Sbjct: 122 WVDMIEDAAHETVPIMLVGNKADIRDTAATE 152
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 6/118 (5%)
Query: 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVY---VVDAADYDNLPVSRSELHDLLSKPSLN 73
VT+++WD GQ RFRS+ + R + V D+ + NL + E
Sbjct: 56 VTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPE 115
Query: 74 GIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 131
P ++LGNKID E ++ E+ + + + S K++TN+ + V+
Sbjct: 116 SFPFVILGNKIDISE---RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVR 170
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLP 57
I T+G F ++ V T+KL WD GQ RFR++ Y R I+ V D D ++
Sbjct: 51 ISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFN 110
Query: 58 VSRSELHDLLSKPSLNGIPLLVLGNKID 85
+ L ++ + + LLV GNK D
Sbjct: 111 GVKMWLQEIDRYATSTVLKLLV-GNKCD 137
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 6/116 (5%)
Query: 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76
V ++WD GQ R+ S+ Y R A + V D + ++ +++ + +L + S N I
Sbjct: 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN-IV 113
Query: 77 LLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVK 131
+ + GNK D L+ + ++ +S D +M S K S N++ + + K
Sbjct: 114 IALSGNKAD----LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 165
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 6/116 (5%)
Query: 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76
V ++WD GQ R+ S+ Y R A + V D + ++ +++ + +L + S N I
Sbjct: 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN-IV 113
Query: 77 LLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVK 131
+ + GNK D L+ + ++ +S D +M S K S N++ + + K
Sbjct: 114 IALSGNKAD----LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 165
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 6/116 (5%)
Query: 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76
V ++WD GQ R+ S+ Y R A + V D + ++ +++ + +L + S N I
Sbjct: 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN-IV 113
Query: 77 LLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVK 131
+ + GNK D L+ + ++ +S D +M S K S N++ + + K
Sbjct: 114 IALSGNKAD----LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 165
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 6/116 (5%)
Query: 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76
V ++WD GQ R+ S+ Y R A + V D + ++ +++ + +L + S N I
Sbjct: 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN-IV 113
Query: 77 LLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVK 131
+ + GNK D L+ + ++ +S D +M S K S N++ + + K
Sbjct: 114 IALSGNKAD----LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 165
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 6/116 (5%)
Query: 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76
V ++WD GQ R+ S+ Y R A + V D + ++ +++ + +L + S N I
Sbjct: 56 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN-IV 114
Query: 77 LLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVK 131
+ + GNK D L+ + ++ +S D +M S K S N++ + + K
Sbjct: 115 IALSGNKAD----LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 166
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 6/116 (5%)
Query: 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76
V ++WD GQ R+ S+ Y R A + V D + ++ +++ + +L + S N I
Sbjct: 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN-IV 113
Query: 77 LLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVK 131
+ + GNK D L+ + ++ +S D +M S K S N++ + + K
Sbjct: 114 IALSGNKAD----LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 165
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 6/116 (5%)
Query: 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76
V ++WD GQ R+ S+ Y R A + V D + ++ +++ + +L + S N I
Sbjct: 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN-IV 113
Query: 77 LLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVK 131
+ + GNK D L+ + ++ +S D +M S K S N++ + + K
Sbjct: 114 IALSGNKAD----LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 165
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 6/119 (5%)
Query: 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVY---VVDAADYDNLPVSRSELHDLLSKPSLN 73
VT+++WD GQ RF+S+ + R + V D ++NL + E
Sbjct: 56 VTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPE 115
Query: 74 GIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 132
P +VLGNK+DK + ++ E+ + + + S K+ TN+ + V+
Sbjct: 116 HFPFVVLGNKVDKED---RQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQ 171
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGI 75
+ ++LWD GQ RFRS+ Y R +A V V D + ++ + + D+ ++ + I
Sbjct: 54 TIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI 113
Query: 76 PLLVLGNKID 85
+LV GNK D
Sbjct: 114 IMLV-GNKTD 122
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 54/116 (46%), Gaps = 6/116 (5%)
Query: 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76
V ++WD GQ R+ S+ Y R A + V D + ++ +++ + +L + S N I
Sbjct: 56 VKFEIWDTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN-IV 114
Query: 77 LLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVK 131
+ + GNK D L+ + ++ +S D + S K S N++ + + K
Sbjct: 115 IALSGNKAD----LANKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAK 166
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 2 IPTVG--FNMRKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLP 57
I T+G F +K+ G V + +WD GQ RF ++ Y R + + V D D D+
Sbjct: 36 ITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQ 95
Query: 58 VSRS---ELHDLLSKPSLNGIPLLVLGNKID 85
++ EL +L N I L ++GNKID
Sbjct: 96 KVKNWVKELRKMLG----NEICLCIVGNKID 122
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 5 VGFNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSE 62
V F R V G T+KL WD GQ RFRS+ Y R + + V D + +
Sbjct: 60 VEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAW 119
Query: 63 LHDLLSKPSLNGIPLLVLGNKID-KPE 88
L D + S N I +++ GNK D PE
Sbjct: 120 LTDARTLASPN-IVVILCGNKKDLDPE 145
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 4/107 (3%)
Query: 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGI 75
V ++LWD GQ RFRS+ Y R + V V D + ++ + + D+ ++ + I
Sbjct: 50 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVI 109
Query: 76 PLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNI 122
+LV GNK D + K + + G + + V S K N+
Sbjct: 110 IMLV-GNKTDLAD---KRQITIEEGEQRAKELSVMFIETSAKTGYNV 152
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 4/122 (3%)
Query: 5 VGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELH 64
G M + + +++WD GQ FRS+ Y R + + V D + S L
Sbjct: 58 FGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLE 117
Query: 65 DLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 124
D S N + +L+ GNK D S+ D+ + G + + S K + N++
Sbjct: 118 DARQHSSSNMVIMLI-GNKSDLE---SRRDVKREEGEAFAREHGLIFMETSAKTACNVEE 173
Query: 125 VI 126
Sbjct: 174 AF 175
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 55/116 (47%), Gaps = 6/116 (5%)
Query: 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76
V ++WD GQ R+ S+ Y R A + V D + + +++ + +L + S + I
Sbjct: 57 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPS-IV 115
Query: 77 LLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVK 131
+ + GNK D L+ + ++E ++ D +M S K + N++ + + K
Sbjct: 116 IALAGNKAD----LANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAK 167
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 6/121 (4%)
Query: 5 VGFNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSE 62
V F R +T IKL WD GQ FRS+ Y R + + V D D +
Sbjct: 45 VEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTW 104
Query: 63 LHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNI 122
L D + N + +L+ GNK D S+ ++ ++ G + + S K ++N+
Sbjct: 105 LEDARQHSNSNMVIMLI-GNKSDLE---SRREVKKEEGEAFAREHGLIFMETSAKTASNV 160
Query: 123 D 123
+
Sbjct: 161 E 161
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGI 75
V ++LWD GQ RFRS+ Y R + V V D + ++ + + D+ ++ + I
Sbjct: 49 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI 108
Query: 76 PLLVLGNKID 85
+LV GNK D
Sbjct: 109 IMLV-GNKTD 117
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76
V ++LWD GQ RFRS+ Y R + V V D + ++ + + D+ ++ + I
Sbjct: 63 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVII 122
Query: 77 LLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNI 122
+LV GNK D + K + + G + + V S K N+
Sbjct: 123 MLV-GNKTDLSD---KRQVSTEEGERKAKELNVMFIETSAKAGYNV 164
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS---ELHDLLSKPSLN 73
V + +WD GQ RF ++ Y R + + V D D D+ ++ EL +L N
Sbjct: 55 VNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG----N 110
Query: 74 GIPLLVLGNKID 85
I L ++GNKID
Sbjct: 111 EICLCIVGNKID 122
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAA---DYDNLPVSRSELHDLLSKPSLN 73
VT+++WD G RF+S+ + R V V D + L R E S
Sbjct: 57 VTMQIWDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPE 116
Query: 74 GIPLLVLGNKID 85
P +VLGNKID
Sbjct: 117 NFPFVVLGNKID 128
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS---ELHDLLSKPSLN 73
V + +WD GQ RF ++ Y R + + V D D D+ ++ EL +L N
Sbjct: 69 VNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG----N 124
Query: 74 GIPLLVLGNKID 85
I L ++GNKID
Sbjct: 125 EICLCIVGNKID 136
>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Alf4 And Gdp
pdb|1SVS|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Gppnhp
Length = 353
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
+PT G T ++ K++D+GGQ R W V+AI++ V +DYD +
Sbjct: 178 VPTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 237
Query: 62 ELH 64
E++
Sbjct: 238 EMN 240
>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
pdb|1SHZ|D Chain D, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
Length = 340
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 3 PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNL 56
PT G + T ++ K++D+GGQ R W V+AI++ V +DYD +
Sbjct: 166 PTKGIHETHFTFKDLHFKMFDVGGQRSERKKWFECFEGVTAIIFCVALSDYDQV 219
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 16/100 (16%)
Query: 4 TVG--FNMRKVT---KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPV 58
T+G F +R++T NVT+++WD+GGQ M ++Y ++ V D +Y +
Sbjct: 38 TIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFE- 96
Query: 59 SRSELHDLLSKPSLNG--IPLLVL-GNKID-------KPE 88
+ + + ++ K S PL+ L GNKID KPE
Sbjct: 97 NLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPE 136
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/114 (20%), Positives = 50/114 (43%), Gaps = 3/114 (2%)
Query: 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76
V ++LWD GQ RFRS+ + R + + D + R+ + L +
Sbjct: 84 VHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD 143
Query: 77 LLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLV 130
++++GNK D P+ + ++ E+ + + + S N++ ++ L+
Sbjct: 144 IVLIGNKADLPD---QREVNERQARELADKYGIPYFETSAATGQNVEKAVETLL 194
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 3 PTVG--FNMRKVTKGNVTIK--LWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPV 58
PT+G F + V GN K +WD GQ RF S+ Y R +A V V D D+
Sbjct: 54 PTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYT 113
Query: 59 SRSELHDLLSKPSLNGIPLLVLGNKID 85
+ + +L N I + + GNK D
Sbjct: 114 LKKWVKELKEHGPEN-IVMAIAGNKCD 139
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 10/118 (8%)
Query: 12 VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPS 71
V V ++WD GQ R+ S+ Y R +A + V D + + ++ + +L ++ +
Sbjct: 56 VNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGN 115
Query: 72 LNGIPLLVLGNKIDKPEA--LSKEDLMEQMGLKSITDREVCCYM-ISCKNSTNIDTVI 126
N + L GNK D +A ++ ED ++ +M S K +TN+ +
Sbjct: 116 PNMVMALA-GNKSDLLDARKVTAED------AQTYAQENGLFFMETSAKTATNVKEIF 166
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGI 75
+ ++LWD G RFRS+ Y R +A V V D + ++ + + D+ ++ + I
Sbjct: 61 TIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI 120
Query: 76 PLLVLGNKID 85
+LV GNK D
Sbjct: 121 IMLV-GNKTD 129
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Query: 5 VGFNMRKVTKGNVTIK--LWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSE 62
V F+ R V G +K +WD G R+R++ Y R + V D + V
Sbjct: 45 VEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERW 104
Query: 63 LHDLLSKPSLNGIPLLVLGNKIDKPEA 89
L +L + +LV GNK D +A
Sbjct: 105 LKELYDHAEATIVVMLV-GNKSDLSQA 130
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 6/134 (4%)
Query: 5 VGFNMRKVTKGNVTIK--LWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSE 62
V F+ R V G +K +WD G R+R++ Y R + V D + V
Sbjct: 60 VEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERW 119
Query: 63 LHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNI 122
L +L I ++++GNK D +A +E E+ + + + + S +STN+
Sbjct: 120 LKELYDHAEAT-IVVMLVGNKSDLSQA--REVPTEEARMFA-ENNGLLFLETSALDSTNV 175
Query: 123 DTVIDWLVKHSKSK 136
+ + ++K +K
Sbjct: 176 ELAFETVLKEIFAK 189
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 6/121 (4%)
Query: 11 KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKP 70
+VT + I D G F +M R + V+ IV +V AAD +P + + ++
Sbjct: 49 QVTVNDKKITFLDTPGHEAFTTMRARGAQ-VTDIVILVVAADDGVMPQTV----EAINHA 103
Query: 71 SLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLV 130
+P++V NK+DKPEA + + +M+++ ++ E I CK S +D L+
Sbjct: 104 KAANVPIIVAINKMDKPEA-NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLL 162
Query: 131 K 131
+
Sbjct: 163 E 163
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 12/136 (8%)
Query: 1 MIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNL 56
+ TVG F ++ V + + IKL WD GQ R+R++ Y R + + D A+ ++
Sbjct: 51 FVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESF 110
Query: 57 PVSRSELHDLLSKPSLNGIPLLVLGNKID--KPEALSKEDLMEQMGLKSITDREVCCYMI 114
+ + + S + ++++GNK D + ED G + D +
Sbjct: 111 AAVQ-DWATQIKTYSWDNAQVILVGNKCDLEDERVVPAED-----GRRLADDLGFEFFEA 164
Query: 115 SCKNSTNIDTVIDWLV 130
S K + N+ V + LV
Sbjct: 165 SAKENINVKQVFERLV 180
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 61/137 (44%), Gaps = 17/137 (12%)
Query: 2 IPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWE-RYCRAVSAIVY--VVDAADYD 54
+PT+G + +G + +WD GQ +F + + Y +A AI+ V Y
Sbjct: 40 VPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYK 99
Query: 55 NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMI 114
N+P H L + N IP+++ GNK+D K+ ++ + + + Y I
Sbjct: 100 NVP----NWHRDLVRVCEN-IPIVLCGNKVD-----IKDRKVKAKSIVFHRKKNLQYYDI 149
Query: 115 SCKNSTNIDTVIDWLVK 131
S K++ N + WL +
Sbjct: 150 SAKSNYNFEKPFLWLAR 166
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76
V +++WD GQ RFRS+ Y R + + V D + + L D S N I
Sbjct: 59 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQN-IV 117
Query: 77 LLVLGNKID 85
+++ GNK D
Sbjct: 118 IILCGNKKD 126
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 8/128 (6%)
Query: 3 PTVG--FNMRKVTKGNVTIK--LWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPV 58
PT+G F + V N K +WD GQ RFR++ Y R +A + V D +
Sbjct: 36 PTIGASFMTKTVQYQNELHKFLIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETF-- 93
Query: 59 SRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKN 118
S L + + + +G P +V+ +K + ++ME+ S KN
Sbjct: 94 --STLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKN 151
Query: 119 STNIDTVI 126
+ NI+ +
Sbjct: 152 AININELF 159
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76
V +++WD GQ RFRS+ Y R + + V D + + L D S N I
Sbjct: 60 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQN-IV 118
Query: 77 LLVLGNKID 85
+++ GNK D
Sbjct: 119 IILCGNKKD 127
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 39/155 (25%)
Query: 1 MIPTVGFNMRK-------------VTKGN-VTIKLWDLGGQPRFRSMWERYCRAVSAIVY 46
I TVG + R+ V +G + ++LWD G RFRS+ + R +
Sbjct: 40 FITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLL 99
Query: 47 VVDAADYDNLP-----VSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGL 101
+ D + + +S+ ++H P +++ GN K DL +Q +
Sbjct: 100 LFDLTNEQSFLNVRNWISQLQMHAYSENPD-----IVLCGN---------KSDLEDQRAV 145
Query: 102 KSITDREVC------CYMISCKNSTNIDTVIDWLV 130
K RE+ + S N TNI I+ L+
Sbjct: 146 KEEEARELAEKYGIPYFETSAANGTNISHAIEMLL 180
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 61/137 (44%), Gaps = 17/137 (12%)
Query: 2 IPTVGFNMRKVT----KGNVTIKLWDLGGQPRFRSMWE-RYCRAVSAIVY--VVDAADYD 54
+PT+G + + +G + +WD GQ +F + + Y +A AI+ V Y
Sbjct: 40 VPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYK 99
Query: 55 NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMI 114
N+P +L + IP+++ GNK+D K+ ++ + + + Y I
Sbjct: 100 NVPNWHRDLVRVCEN-----IPIVLCGNKVD-----IKDRKVKAKSIVFHRKKNLQYYDI 149
Query: 115 SCKNSTNIDTVIDWLVK 131
S K++ N + WL +
Sbjct: 150 SAKSNYNFEKPFLWLAR 166
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76
V ++LWD G RFRS+ Y R + V V D + ++ + + D+ ++ + I
Sbjct: 55 VRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVII 114
Query: 77 LLVLGNKID 85
+LV GNK D
Sbjct: 115 MLV-GNKTD 122
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 20/130 (15%)
Query: 11 KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKP 70
+V +V + LWD GQ F ++ + Y R A V V D ++ S ++++
Sbjct: 48 QVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAE- 106
Query: 71 SLNGIPLLVLGNKID-------KPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNID 123
+ IP ++ NKID K E E L +++ L+ Y S K N+
Sbjct: 107 -VGDIPTALVQNKIDLLDDSCIKNE--EAEGLAKRLKLR--------FYRTSVKEDLNVS 155
Query: 124 TVIDWLV-KH 132
V +L KH
Sbjct: 156 EVFKYLAEKH 165
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 5 VGFNMRKVTKGNVTIK--LWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD---YDNLPVS 59
V F R + TIK +WD GQ R+R++ Y R + V D A Y+N+
Sbjct: 55 VEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERW 114
Query: 60 RSELHDLLSKPSLNGIPLLVLGNKID 85
EL D + + I ++++GNK D
Sbjct: 115 LKELRD----HADSNIVIMLVGNKSD 136
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 5 VGFNMRKVTKGNVTIK--LWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD---YDNLPVS 59
V F R + TIK +WD GQ R+R++ Y R + V D A Y+N+
Sbjct: 64 VEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERW 123
Query: 60 RSELHDLLSKPSLNGIPLLVLGNKID 85
EL D + + I ++++GNK D
Sbjct: 124 LKELRD----HADSNIVIMLVGNKSD 145
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 62/139 (44%), Gaps = 18/139 (12%)
Query: 1 MIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNL 56
+ TVG F ++ + + + IKL WD GQ R+R++ Y R + + D + ++
Sbjct: 34 FVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESF 93
Query: 57 PVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKE---DLMEQMGLKSITDREVCC 111
+ + + S + +L++GNK D + +S E L + +G +
Sbjct: 94 NAVQ-DWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFE--------F 144
Query: 112 YMISCKNSTNIDTVIDWLV 130
+ S K++ N+ + LV
Sbjct: 145 FEASAKDNINVKQTFERLV 163
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGI 75
V ++LWD G RFRS+ Y R + V V D + ++ + + D+ ++ + I
Sbjct: 64 TVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI 123
Query: 76 PLLVLGNKID 85
+LV GNK D
Sbjct: 124 IMLV-GNKTD 132
>pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double
Mutant I56cQ333C
Length = 354
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
+ T G T ++ K++D+GGQ R W V+AI++ V +DYD +
Sbjct: 179 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 238
Query: 62 ELH 64
E++
Sbjct: 239 EMN 241
>pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|B Chain B, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|C Chain C, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|D Chain D, Structure Of Lgn Gl4GALPHAI1 COMPLEX
Length = 330
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
+ T G T ++ K++D+GGQ R W V+AI++ V +DYD +
Sbjct: 155 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 214
Query: 62 ELH 64
E++
Sbjct: 215 EMN 217
>pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
pdb|2IK8|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
Length = 324
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
+ T G T ++ K++D+GGQ R W V+AI++ V +DYD +
Sbjct: 149 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 208
Query: 62 ELH 64
E++
Sbjct: 209 EMN 211
>pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
pdb|2GTP|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
Length = 323
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
+ T G T ++ K++D+GGQ R W V+AI++ V +DYD +
Sbjct: 148 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 207
Query: 62 ELH 64
E++
Sbjct: 208 EMN 210
>pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1
pdb|1AS2|A Chain A, Gdp+pi Bound G42v Gia1
pdb|1AS3|A Chain A, Gdp Bound G42v Gia1
Length = 353
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
+ T G T ++ K++D+GGQ R W V+AI++ V +DYD +
Sbjct: 178 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 237
Query: 62 ELH 64
E++
Sbjct: 238 EMN 240
>pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|B Chain B, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|C Chain C, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|D Chain D, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
Length = 329
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
+ T G T ++ K++D+GGQ R W V+AI++ V +DYD +
Sbjct: 154 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 213
Query: 62 ELH 64
E++
Sbjct: 214 EMN 216
>pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|B Chain B, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|C Chain C, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
Length = 325
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
+ T G T ++ K++D+GGQ R W V+AI++ V +DYD +
Sbjct: 150 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 209
Query: 62 ELH 64
E++
Sbjct: 210 EMN 212
>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
pdb|2XNS|B Chain B, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
Length = 327
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
+ T G T ++ K++D+GGQ R W V+AI++ V +DYD +
Sbjct: 152 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 211
Query: 62 ELH 64
E++
Sbjct: 212 EMN 214
>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|1KJY|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
Length = 325
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
+ T G T ++ K++D+GGQ R W V+AI++ V +DYD +
Sbjct: 150 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 209
Query: 62 ELH 64
E++
Sbjct: 210 EMN 212
>pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
pdb|2G83|B Chain B, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
Length = 313
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
+ T G T ++ K++D+GGQ R W V+AI++ V +DYD +
Sbjct: 147 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 206
Query: 62 ELH 64
E++
Sbjct: 207 EMN 209
>pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1AGR|A Chain A, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1AGR|D Chain D, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1CIP|A Chain A, Gi-Alpha-1 Subunit Of Guanine Nucleotide-Binding Protein
Complexed With A Gtp Analogue
pdb|1BOF|A Chain A, Gi-Alpha-1 Bound To Gdp And Magnesium
pdb|1GDD|A Chain A, Tertiary And Quaternary Structural Changes In Gia1 Induced
By Gtp Hydrolysis
pdb|1GFI|A Chain A, Structures Of Active Conformations Of Gi Alpha 1 And The
Mechanism Of Gtp Hydrolysis
pdb|1GIA|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
+ T G T ++ K++D+GGQ R W V+AI++ V +DYD +
Sbjct: 178 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 237
Query: 62 ELH 64
E++
Sbjct: 238 EMN 240
>pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|B Chain B, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|C Chain C, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|D Chain D, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5S|A Chain A, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|B Chain B, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|C Chain C, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|D Chain D, Structure Of Lgn Gl3GALPHAI3 COMPLEX
Length = 330
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
+ T G T ++ K++D+GGQ R W V+AI++ V +DYD +
Sbjct: 155 VKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 214
Query: 62 ELH 64
E++
Sbjct: 215 EMN 217
>pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|B Chain B, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|C Chain C, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|D Chain D, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
Length = 330
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
+ T G T ++ K++D+GGQ R W V+AI++ V +DYD +
Sbjct: 155 VKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 214
Query: 62 ELH 64
E++
Sbjct: 215 EMN 217
>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif.
pdb|3ONW|B Chain B, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif
Length = 328
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
+ T G T ++ K++D+GGQ R W V+AI++ V +DYD +
Sbjct: 153 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 212
Query: 62 ELH 64
E++
Sbjct: 213 EMN 215
>pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs10 And Activated Gi Alpha 3
Length = 323
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
+ T G T ++ K++D+GGQ R W V+AI++ V +DYD +
Sbjct: 148 VKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 207
Query: 62 ELH 64
E++
Sbjct: 208 EMN 210
>pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Alf4 And Gdp
pdb|2ZJZ|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
pdb|2ZJZ|B Chain B, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
Length = 356
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
+ T G T ++ K++D+GGQ R W V+AI++ V +DYD +
Sbjct: 181 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 240
Query: 62 ELH 64
E++
Sbjct: 241 EMN 243
>pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit
Length = 315
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
+ T G T ++ K++D+GGQ R W V+AI++ V +DYD +
Sbjct: 148 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 207
Query: 62 ELH 64
E++
Sbjct: 208 EMN 210
>pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
pdb|3QI2|B Chain B, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
Length = 328
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
+ T G T ++ K++D+GGQ R W V+AI++ V +DYD +
Sbjct: 153 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 212
Query: 62 ELH 64
E++
Sbjct: 213 EMN 215
>pdb|3FFA|A Chain A, Crystal Structure Of A Fast Activating G Protein Mutant
pdb|3FFB|A Chain A, Gi-Alpha-1 Mutant In Gdp Bound Form
Length = 360
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
+ T G T ++ K++D+GGQ R W V+AI++ V +DYD +
Sbjct: 185 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 244
Query: 62 ELH 64
E++
Sbjct: 245 EMN 247
>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2ODE|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2V4Z|A Chain A, The Crystal Structure Of The Human G-Protein Subunit Alpha
( Gnai3) In Complex With An Engineered Regulator Of G-
Protein Signaling Type 2 Domain (Rgs2)
Length = 350
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
+ T G T ++ K++D+GGQ R W V+AI++ V +DYD +
Sbjct: 178 VKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 237
Query: 62 ELH 64
E++
Sbjct: 238 EMN 240
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Query: 5 VGFNMRKVTKGNVTIK--LWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD---YDNLPVS 59
V F R + TIK +WD GQ R+R + Y R + V D A Y+N+
Sbjct: 40 VEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERW 99
Query: 60 RSELHDLLSKPSLNGIPLLVLGNKID 85
EL D + + I ++++GNK D
Sbjct: 100 LKELRD----HADSNIVIMLVGNKSD 121
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 9/86 (10%)
Query: 5 VGFNMR--KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD---AADYDNLPVS 59
V F R +V+ + +++WD GQ RFR++ Y R + + V D + Y++L
Sbjct: 50 VEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSW 109
Query: 60 RSELHDLLSKPSLNGIPLLVLGNKID 85
++ +L + ++ ++++GNK D
Sbjct: 110 LTDARNLTNPNTV----IILIGNKAD 131
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 49/110 (44%), Gaps = 10/110 (9%)
Query: 1 MIPTVGFNMRKVT----KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNL 56
+ TVG + + T + V +++WD GQ R+R++ Y R + + D + ++
Sbjct: 52 FVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESF 111
Query: 57 PVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE-----ALSKEDLMEQMGL 101
+ + + S + ++++GNK D E + L EQ+G
Sbjct: 112 NAVQ-DWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGF 160
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 9/86 (10%)
Query: 5 VGFNMR--KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD---AADYDNLPVS 59
V F R +V+ + +++WD GQ RFR++ Y R + + V D + Y++L
Sbjct: 65 VEFGTRIIEVSGQKIKLQIWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSW 124
Query: 60 RSELHDLLSKPSLNGIPLLVLGNKID 85
++ +L + ++ ++++GNK D
Sbjct: 125 LTDARNLTNPNTV----IILIGNKAD 146
>pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|D Chain D, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|A Chain A, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|C Chain C, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
Length = 325
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
+ T G + + ++ +++D+GGQ R W V+AI++ V +DYD +
Sbjct: 150 VKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 209
Query: 62 ELH 64
E++
Sbjct: 210 EMN 212
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/144 (20%), Positives = 59/144 (40%), Gaps = 17/144 (11%)
Query: 1 MIPTVGFNMRKV-----TKG---------NVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 46
I TVG + R+ T+G V ++LWD G RFRS+ + R +
Sbjct: 40 FITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLL 99
Query: 47 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITD 106
+ D + R+ + L + ++++GNK D P+ + ++ E+ +
Sbjct: 100 MFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPD---QREVNERQARELAEK 156
Query: 107 REVCCYMISCKNSTNIDTVIDWLV 130
+ + S N++ ++ L+
Sbjct: 157 YGIPYFETSAATGQNVEKSVETLL 180
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/144 (20%), Positives = 59/144 (40%), Gaps = 17/144 (11%)
Query: 1 MIPTVGFNMRKV-----TKG---------NVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 46
I TVG + R+ T+G V ++LWD G RFRS+ + R +
Sbjct: 40 FITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLL 99
Query: 47 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITD 106
+ D + R+ + L + ++++GNK D P+ + ++ E+ +
Sbjct: 100 MFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPD---QREVNERQARELAEK 156
Query: 107 REVCCYMISCKNSTNIDTVIDWLV 130
+ + S N++ ++ L+
Sbjct: 157 YGIPYFETSAATGQNVEKSVETLL 180
>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|B Chain B, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|A Chain A, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation
Length = 356
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
+ T G + + ++ +++D+GGQ R W V+AI++ V +DYD +
Sbjct: 181 VKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 240
Query: 62 ELH 64
E++
Sbjct: 241 EMN 243
>pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
pdb|3C7K|C Chain C, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
Length = 333
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 32/158 (20%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNL---PV 58
+ T G T N+ +L+D+GGQ R W V+AI++ V + YD +
Sbjct: 159 VKTTGIVETHFTFKNLHFRLFDVGGQRSERKKWIHCFEDVTAIIFCVALSGYDQVLHEDE 218
Query: 59 SRSELHDLL--------SKPSLNGIPLLVL------GNKIDK----------PEALSKED 94
+ + +H+ L +K ++ +L L G KI K P + + ED
Sbjct: 219 TTNRMHESLMLFDSICNNKFFIDTSIILFLNKKDLFGEKIKKSPLTICFPEYPGSNTYED 278
Query: 95 ----LMEQMGLKSIT-DREVCCYMISCKNSTNIDTVID 127
+ Q K+ + ++E+ C+M ++ NI V D
Sbjct: 279 AAAYIQTQFESKNRSPNKEIYCHMTCATDTNNIQVVFD 316
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 14 KGNVTIKLWDLGGQPRFRSMWE-RYCRAVSAIVY--VVDAADYDNLPVSRSELHDLLSKP 70
+G + +WD GQ +F + + Y +A AI+ V Y N+P H L +
Sbjct: 56 RGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP----NWHRDLVRV 111
Query: 71 SLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLV 130
N IP+++ GNK+D K+ ++ + + + Y IS K++ N + WL
Sbjct: 112 CEN-IPIVLCGNKVD-----IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 165
Query: 131 K 131
+
Sbjct: 166 R 166
>pdb|1ZCB|A Chain A, Crystal Structure Of G Alpha 13 In Complex With Gdp
pdb|3AB3|A Chain A, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
pdb|3AB3|C Chain C, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
Length = 362
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 64/131 (48%), Gaps = 20/131 (15%)
Query: 3 PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSE 62
PT G + NV K+ D+GGQ R W +V++I+++V ++++D + + +
Sbjct: 187 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQ 246
Query: 63 LHDLLSKPSLNGIPLLVLGNKIDKPEA----LSKEDLMEQ-MGLKSITD----------- 106
+ L SLN I ++ N++ + L+K DL+E+ + + SI D
Sbjct: 247 TNRLTE--SLN-IFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHC 303
Query: 107 -REVCCYMISC 116
R+V +++ C
Sbjct: 304 LRDVQKFLVEC 314
>pdb|3CX7|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp-Alf4
pdb|3CX8|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gtp-Gamma-S
Length = 338
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 64/131 (48%), Gaps = 20/131 (15%)
Query: 3 PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSE 62
PT G + NV K+ D+GGQ R W +V++I+++V ++++D + + +
Sbjct: 163 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQ 222
Query: 63 LHDLLSKPSLNGIPLLVLGNKIDKPEA----LSKEDLMEQ-MGLKSITD----------- 106
+ L SLN I ++ N++ + L+K DL+E+ + + SI D
Sbjct: 223 TNRLTE--SLN-IFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHC 279
Query: 107 -REVCCYMISC 116
R+V +++ C
Sbjct: 280 LRDVQKFLVEC 290
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 14 KGNVTIKLWDLGGQPRFRSMWE-RYCRAVSAIVY--VVDAADYDNLPVSRSELHDLLSKP 70
+G + +WD GQ +F + + Y +A AI+ V Y N+P H L +
Sbjct: 49 RGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP----NWHRDLVRV 104
Query: 71 SLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLV 130
N IP+++ GNK+D K+ ++ + + + Y IS K++ N + WL
Sbjct: 105 CEN-IPIVLCGNKVD-----IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 158
Query: 131 K 131
+
Sbjct: 159 R 159
>pdb|2DW6|A Chain A, Crystal Structure Of The Mutant K184a Of D-Tartrate
Dehydratase From Bradyrhizobium Japonicum Complexed With
Mg++ And D-Tartrate
pdb|2DW6|B Chain B, Crystal Structure Of The Mutant K184a Of D-Tartrate
Dehydratase From Bradyrhizobium Japonicum Complexed With
Mg++ And D-Tartrate
pdb|2DW6|C Chain C, Crystal Structure Of The Mutant K184a Of D-Tartrate
Dehydratase From Bradyrhizobium Japonicum Complexed With
Mg++ And D-Tartrate
pdb|2DW6|D Chain D, Crystal Structure Of The Mutant K184a Of D-Tartrate
Dehydratase From Bradyrhizobium Japonicum Complexed With
Mg++ And D-Tartrate
Length = 389
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Query: 6 GFNMRKVTKGNVTIKLWD----LGGQPRFRSMWERYCRAVSAIVYVVDAADY----DNLP 57
G R V G + + +WD + G+P FR + ER+ + V+V A Y L
Sbjct: 105 GHGERSVAVGTIDMAVWDAVAKIAGKPLFRLLAERHGVKANPRVFVYAAGGYYYPGKGLS 164
Query: 58 VSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMG 100
+ R E+ L + N + + + G I++ + + E ++E++G
Sbjct: 165 MLRGEMRGYLDR-GYNVVKMAIGGAPIEE-DRMRIEAVLEEIG 205
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 14 KGNVTIKLWDLGGQPRFRSMWE-RYCRAVSAIVY--VVDAADYDNLPVSRSELHDLLSKP 70
+G + +WD GQ +F + + Y +A AI+ V Y N+P H L +
Sbjct: 56 RGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVP----NWHRDLVRV 111
Query: 71 SLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLV 130
N IP+++ GNK+D K+ ++ + + + Y IS K++ N + WL
Sbjct: 112 CEN-IPIVLCGNKVD-----IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 165
Query: 131 K 131
+
Sbjct: 166 R 166
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 14 KGNVTIKLWDLGGQPRFRSMWE-RYCRAVSAIVY--VVDAADYDNLPVSRSELHDLLSKP 70
+G + +WD GQ +F + + Y +A AI+ V Y N+P H L +
Sbjct: 61 RGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP----NWHRDLVRV 116
Query: 71 SLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLV 130
N IP+++ GNK+D K+ ++ + + + Y IS K++ N + WL
Sbjct: 117 CEN-IPIVLCGNKVD-----IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 170
Query: 131 K 131
+
Sbjct: 171 R 171
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 14 KGNVTIKLWDLGGQPRFRSMWE-RYCRAVSAIVY--VVDAADYDNLPVSRSELHDLLSKP 70
+G + +WD GQ +F + + Y +A AI+ V Y N+P H L +
Sbjct: 61 RGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP----NWHRDLVRV 116
Query: 71 SLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLV 130
N IP+++ GNK+D K+ ++ + + + Y IS K++ N + WL
Sbjct: 117 CEN-IPIVLCGNKVD-----IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 170
Query: 131 K 131
+
Sbjct: 171 R 171
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/144 (20%), Positives = 57/144 (39%), Gaps = 17/144 (11%)
Query: 1 MIPTVGFNMRKV-----TKG---------NVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 46
I TVG + R+ T+G V ++LWD G RFRS+ + R +
Sbjct: 40 FITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLL 99
Query: 47 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITD 106
D + R+ L + ++++GNK D P+ + ++ E+ +
Sbjct: 100 XFDLTSQQSFLNVRNWXSQLQANAYCENPDIVLIGNKADLPD---QREVNERQARELAEK 156
Query: 107 REVCCYMISCKNSTNIDTVIDWLV 130
+ + S N++ ++ L+
Sbjct: 157 YGIPYFETSAATGQNVEKSVETLL 180
>pdb|2XTZ|A Chain A, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|B Chain B, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|C Chain C, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
Length = 354
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 10/82 (12%)
Query: 14 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD---------NLPVSRSELH 64
K +L+D+GGQ R W V+A+++ ++YD N + EL
Sbjct: 180 KSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELF 239
Query: 65 D-LLSKPSLNGIPLLVLGNKID 85
D +L +P ++ NK D
Sbjct: 240 DWVLKQPCFEKTSFMLFLNKFD 261
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 14 KGNVTIKLWDLGGQPRFRSMWE-RYCRAVSAIVY--VVDAADYDNLPVSRSELHDLLSKP 70
+G + +WD GQ +F + + Y +A AI+ V Y N+P H L +
Sbjct: 56 RGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP----NWHRDLVRV 111
Query: 71 SLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLV 130
N IP+++ GNK+D K+ ++ + + + Y IS K++ N + WL
Sbjct: 112 CEN-IPIVLCGNKVD-----IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 165
Query: 131 K 131
+
Sbjct: 166 R 166
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 14 KGNVTIKLWDLGGQPRFRSMWE-RYCRAVSAIVY--VVDAADYDNLPVSRSELHDLLSKP 70
+G + +WD GQ +F + + Y +A AI+ V Y N+P H L +
Sbjct: 56 RGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP----NWHRDLVRV 111
Query: 71 SLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLV 130
N IP+++ GNK+D K+ ++ + + + Y IS K++ N + WL
Sbjct: 112 CEN-IPIVLCGNKVD-----IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 165
Query: 131 K 131
+
Sbjct: 166 R 166
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 14 KGNVTIKLWDLGGQPRFRSMWE-RYCRAVSAIVY--VVDAADYDNLPVSRSELHDLLSKP 70
+G + +WD GQ +F + + Y +A AI+ V Y N+P H L +
Sbjct: 56 RGPIKFNVWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVP----NWHRDLVRV 111
Query: 71 SLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLV 130
N IP+++ GNK+D K+ ++ + + + Y IS K++ N + WL
Sbjct: 112 CEN-IPIVLCGNKVD-----IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 165
Query: 131 K 131
+
Sbjct: 166 R 166
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 46/115 (40%), Gaps = 7/115 (6%)
Query: 19 IKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78
+ + D GQ F +M E+Y R + V D + +L + P++
Sbjct: 55 LDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMI 114
Query: 79 VLGNK--IDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 131
++GNK +D +++E+ G + +V S K N+D LV+
Sbjct: 115 LIGNKADLDHQRQVTQEE-----GQQLARQLKVTYMEASAKIRMNVDQAFHELVR 164
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/144 (20%), Positives = 57/144 (39%), Gaps = 17/144 (11%)
Query: 1 MIPTVGFNMRKV-----TKG---------NVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 46
I TVG + R+ T+G V ++LWD G RFRS+ + R +
Sbjct: 40 FITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLL 99
Query: 47 VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITD 106
D + R+ L + ++++GNK D P+ + ++ E+ +
Sbjct: 100 XFDLTSQQSFLNVRNWXSQLQANAYCENPDIVLIGNKADLPD---QREVNERQARELAEK 156
Query: 107 REVCCYMISCKNSTNIDTVIDWLV 130
+ + S N++ ++ L+
Sbjct: 157 YGIPYFETSAATGQNVEKSVETLL 180
>pdb|1TZZ|A Chain A, Crystal Structure Of The Protein L1841, Unknown Member Of
Enolase Superfamily From Bradyrhizobium Japonicum
pdb|1TZZ|B Chain B, Crystal Structure Of The Protein L1841, Unknown Member Of
Enolase Superfamily From Bradyrhizobium Japonicum
Length = 392
Score = 34.7 bits (78), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Query: 6 GFNMRKVTKGNVTIKLWD----LGGQPRFRSMWERYCRAVSAIVYVVDAADY----DNLP 57
G R V G + + +WD + G+P FR + ER+ + V+V A Y L
Sbjct: 108 GHGERSVAVGTIDMAVWDAVAKIAGKPLFRLLAERHGVKANPRVFVYAAGGYYYPGKGLS 167
Query: 58 VSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMG 100
+ R E+ L + N + + + G I++ + + E ++E++G
Sbjct: 168 MLRGEMRGYLDR-GYNVVKMKIGGAPIEE-DRMRIEAVLEEIG 208
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 34.7 bits (78), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 14 KGNVTIK--LWDLGGQPRFRSMWERYCRAVSAIVYVVDAA---DYDNLPVSRSELHDLLS 68
K N IK +WD GQ R+R++ Y R + V D ++N+ EL D
Sbjct: 52 KNNKIIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRD--- 108
Query: 69 KPSLNGIPLLVLGNKID 85
+ + I +L++GNK D
Sbjct: 109 -NADSNIVILLVGNKSD 124
>pdb|2DW7|A Chain A, Crystal Structure Of D-Tartrate Dehydratase From
Bradyrhizobium Japonicum Complexed With Mg++ And Meso-
Tartrate
pdb|2DW7|B Chain B, Crystal Structure Of D-Tartrate Dehydratase From
Bradyrhizobium Japonicum Complexed With Mg++ And Meso-
Tartrate
pdb|2DW7|C Chain C, Crystal Structure Of D-Tartrate Dehydratase From
Bradyrhizobium Japonicum Complexed With Mg++ And Meso-
Tartrate
pdb|2DW7|D Chain D, Crystal Structure Of D-Tartrate Dehydratase From
Bradyrhizobium Japonicum Complexed With Mg++ And Meso-
Tartrate
pdb|2DW7|E Chain E, Crystal Structure Of D-Tartrate Dehydratase From
Bradyrhizobium Japonicum Complexed With Mg++ And Meso-
Tartrate
pdb|2DW7|F Chain F, Crystal Structure Of D-Tartrate Dehydratase From
Bradyrhizobium Japonicum Complexed With Mg++ And Meso-
Tartrate
pdb|2DW7|G Chain G, Crystal Structure Of D-Tartrate Dehydratase From
Bradyrhizobium Japonicum Complexed With Mg++ And Meso-
Tartrate
pdb|2DW7|H Chain H, Crystal Structure Of D-Tartrate Dehydratase From
Bradyrhizobium Japonicum Complexed With Mg++ And Meso-
Tartrate
pdb|2DW7|I Chain I, Crystal Structure Of D-Tartrate Dehydratase From
Bradyrhizobium Japonicum Complexed With Mg++ And Meso-
Tartrate
pdb|2DW7|J Chain J, Crystal Structure Of D-Tartrate Dehydratase From
Bradyrhizobium Japonicum Complexed With Mg++ And Meso-
Tartrate
pdb|2DW7|K Chain K, Crystal Structure Of D-Tartrate Dehydratase From
Bradyrhizobium Japonicum Complexed With Mg++ And Meso-
Tartrate
pdb|2DW7|L Chain L, Crystal Structure Of D-Tartrate Dehydratase From
Bradyrhizobium Japonicum Complexed With Mg++ And Meso-
Tartrate
pdb|2DW7|M Chain M, Crystal Structure Of D-Tartrate Dehydratase From
Bradyrhizobium Japonicum Complexed With Mg++ And Meso-
Tartrate
pdb|2DW7|N Chain N, Crystal Structure Of D-Tartrate Dehydratase From
Bradyrhizobium Japonicum Complexed With Mg++ And Meso-
Tartrate
pdb|2DW7|O Chain O, Crystal Structure Of D-Tartrate Dehydratase From
Bradyrhizobium Japonicum Complexed With Mg++ And Meso-
Tartrate
pdb|2DW7|P Chain P, Crystal Structure Of D-Tartrate Dehydratase From
Bradyrhizobium Japonicum Complexed With Mg++ And Meso-
Tartrate
Length = 389
Score = 34.7 bits (78), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Query: 6 GFNMRKVTKGNVTIKLWD----LGGQPRFRSMWERYCRAVSAIVYVVDAADY----DNLP 57
G R V G + + +WD + G+P FR + ER+ + V+V A Y L
Sbjct: 105 GHGERSVAVGTIDMAVWDAVAKIAGKPLFRLLAERHGVKANPRVFVYAAGGYYYPGKGLS 164
Query: 58 VSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMG 100
+ R E+ L + N + + + G I++ + + E ++E++G
Sbjct: 165 MLRGEMRGYLDR-GYNVVKMKIGGAPIEE-DRMRIEAVLEEIG 205
>pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1
Length = 354
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
+ T G T ++ K++D+ GQ R W V+AI++ V +DYD +
Sbjct: 179 VKTTGIVETHFTFKDLHFKMFDVAGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 238
Query: 62 ELH 64
E++
Sbjct: 239 EMN 241
>pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GIT|A Chain A, Structure Of Gtp-Binding Protein
Length = 353
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
+ T G T ++ K++D+G Q R W V+AI++ V +DYD +
Sbjct: 178 VKTTGIVETHFTFKDLHFKMFDVGAQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 237
Query: 62 ELH 64
E++
Sbjct: 238 EMN 240
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 8/128 (6%)
Query: 3 PTVG--FNMRKVTKGNVTIK--LWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPV 58
PT+G F + V N K +WD G RFR++ Y R +A + V D +
Sbjct: 37 PTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETF-- 94
Query: 59 SRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKN 118
S L + + + +G P +V+ +K + ++ME+ S KN
Sbjct: 95 --STLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKN 152
Query: 119 STNIDTVI 126
+ NI+ +
Sbjct: 153 AININELF 160
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 34.3 bits (77), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76
V +++WD G RFRS+ Y R + + V D + + L D S N I
Sbjct: 57 VKLQIWDTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQN-IV 115
Query: 77 LLVLGNKID 85
+++ GNK D
Sbjct: 116 IILCGNKKD 124
>pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
Length = 350
Score = 34.3 bits (77), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD 54
+ T G + + ++ + +D+GGQ R W V+AI++ V +DYD
Sbjct: 175 VKTTGIIETQFSFKDLNFRXFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD 227
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 34.3 bits (77), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Query: 5 VGFNMRKVTKGNVTIK--LWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD---YDNLPVS 59
V F R + TIK +WD G R+R++ Y R + V D A Y+N+
Sbjct: 43 VEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERW 102
Query: 60 RSELHDLLSKPSLNGIPLLVLGNKID 85
EL D + + I ++++GNK D
Sbjct: 103 LKELRD----HADSNIVIMLVGNKSD 124
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 3 PTVGFNMRKVTKGN---VTIKLWDLGGQPRFRSMWERYCRAVSA--IVY-VVDAADYDNL 56
PT+ + RK T+ + + + D GQ F +M E+Y R IVY V D A ++++
Sbjct: 49 PTIEDSYRKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHV 108
Query: 57 PVSRSELHDLLSK-PSLNGIPLLVLGNKID 85
H L+ + P++++ NK+D
Sbjct: 109 ----DRFHQLILRVKDRESFPMILVANKVD 134
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 33.9 bits (76), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 12/113 (10%)
Query: 2 IPTV--GFNMRKVTKGN-VTIKLWDLGGQP---RFRSMWERYCRAVSAIVYVVDAADYDN 55
+PTV F+ V G+ V + LWD GQ R R + R ++ A Y+N
Sbjct: 36 VPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYEN 95
Query: 56 LPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDRE 108
+ + L +L K GIP++++G K+D + K+ L + G SIT +
Sbjct: 96 --IHKKWLPEL--KHYAPGIPIVLVGTKLDLRD--DKQFLKDHPGAASITTAQ 142
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 33.9 bits (76), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 60/139 (43%), Gaps = 18/139 (12%)
Query: 1 MIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNL 56
+ TVG F ++ + + + IKL WD G R+R++ Y R + D + ++
Sbjct: 37 FVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAXGFILXYDITNEESF 96
Query: 57 PVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKE---DLMEQMGLKSITDREVCC 111
+ + + S + +L++GNK D + +S E L + +G +
Sbjct: 97 NAVQ-DWSTQIKTYSWDNAQVLLVGNKCDXEDERVVSSERGRQLADHLGFE--------F 147
Query: 112 YMISCKNSTNIDTVIDWLV 130
+ S K++ N+ + LV
Sbjct: 148 FEASAKDNINVKQTFERLV 166
>pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human G-Alpha-I1
Length = 354
Score = 33.9 bits (76), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
+ T G T ++ K++D+ GQ R W V+AI++ V +DYD +
Sbjct: 179 VKTTGIVETHFTFKDLHFKMFDVDGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 238
Query: 62 ELH 64
E++
Sbjct: 239 EMN 241
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 33.9 bits (76), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 20/130 (15%)
Query: 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLS-KPSLNG 74
V I + D G + ++ + Y R+ + V ++++ + +L K +
Sbjct: 50 EVQIDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDK 109
Query: 75 IPLLVLGNKID--------KPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 126
IPLLV+GNK D EA SK E+ G++ + S K N+D V
Sbjct: 110 IPLLVVGNKSDLEERRQVPVEEARSK---AEEWGVQYVE--------TSAKTRANVDKVF 158
Query: 127 DWLVKHSKSK 136
L++ ++K
Sbjct: 159 FDLMREIRTK 168
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 33.9 bits (76), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Query: 5 VGFNMRKVTKGNVTIK--LWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD---YDNLPVS 59
V F R + TIK +WD G R+R++ Y R + V D A Y+N+
Sbjct: 64 VEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERW 123
Query: 60 RSELHDLLSKPSLNGIPLLVLGNKID 85
EL D + + I ++++GNK D
Sbjct: 124 LKELRD----HADSNIVIMLVGNKSD 145
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 33.9 bits (76), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 20/130 (15%)
Query: 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLS-KPSLNG 74
V I + D G + ++ + Y R+ + V ++++ + +L K +
Sbjct: 54 EVQIDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDK 113
Query: 75 IPLLVLGNKID--------KPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 126
IPLLV+GNK D EA SK E+ G++ + S K N+D V
Sbjct: 114 IPLLVVGNKSDLEERRQVPVEEARSK---AEEWGVQYVE--------TSAKTRANVDKVF 162
Query: 127 DWLVKHSKSK 136
L++ ++K
Sbjct: 163 FDLMREIRTK 172
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 19/123 (15%)
Query: 15 GNVTIKLWDLGGQPRFRSMWE-RYCRAVSAIVY--VVDAADYDNLPVSRSELHDLLSKPS 71
G + +WD G +F + + Y A AI+ V Y N+P H L +
Sbjct: 51 GEIKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVP----NWHRDLVRVC 106
Query: 72 LNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSIT---DREVCCYMISCKNSTNIDTVIDW 128
N IP+++ GNK+D E ++ K+IT + + Y IS K++ N + W
Sbjct: 107 EN-IPIVLCGNKVDVKE--------RKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLW 157
Query: 129 LVK 131
L +
Sbjct: 158 LAR 160
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 33.5 bits (75), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 19/123 (15%)
Query: 15 GNVTIKLWDLGGQPRFRSMWE-RYCRAVSAIVY--VVDAADYDNLPVSRSELHDLLSKPS 71
G + +WD G +F + + Y A AI+ V Y N+P H L +
Sbjct: 52 GEIKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVP----NWHRDLVRVC 107
Query: 72 LNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSIT---DREVCCYMISCKNSTNIDTVIDW 128
N IP+++ GNK+D E ++ K+IT + + Y IS K++ N + W
Sbjct: 108 EN-IPIVLCGNKVDVKE--------RKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLW 158
Query: 129 LVK 131
L +
Sbjct: 159 LAR 161
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 33.5 bits (75), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 14 KGNVTIKLWDLGGQPRFRSMWE-RYCRAVSAIVY--VVDAADYDNLPVSRSELHDLLSKP 70
+G + +WD GQ ++ + + Y +A AI+ V Y N+P H L +
Sbjct: 56 RGPIKFNVWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP----NWHRDLVRV 111
Query: 71 SLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLV 130
N IP+++ GNK+D K+ ++ + + + Y IS K++ N + WL
Sbjct: 112 CEN-IPIVLCGNKVD-----IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 165
Query: 131 K 131
+
Sbjct: 166 R 166
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 33.5 bits (75), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 3/113 (2%)
Query: 19 IKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78
+ + D GQ F +M E+Y RA + V D + +L + P++
Sbjct: 59 LDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVV 118
Query: 79 VLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 131
++GNK D S+ + V + S K N+D + LV+
Sbjct: 119 LVGNKADLE---SQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVR 168
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 33.5 bits (75), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 22/123 (17%)
Query: 17 VTIKLWDLGGQPRFRSMWERYCR-AVSA-IVY-VVDAADYDNLPVSRSELHDLLSKPSLN 73
+ ++WD GQ R+R++ Y R AV A IVY + ++ Y+N SEL + + +
Sbjct: 62 IKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRE----NADD 117
Query: 74 GIPLLVLGNKID------KPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVID 127
+ + ++GNK D P SK E L + T S NS N+D +
Sbjct: 118 NVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTET---------SALNSENVDKAFE 168
Query: 128 WLV 130
L+
Sbjct: 169 ELI 171
>pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 33.5 bits (75), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
+ T G T ++ K++D+GG R W V+AI++ V +DYD +
Sbjct: 178 VKTTGIVETHFTFKDLHFKMFDVGGLRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 237
Query: 62 ELH 64
E++
Sbjct: 238 EMN 240
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 33.1 bits (74), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
Query: 5 VGFNMRKVTKGNVTIK--LWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD---YDNLPVS 59
V F R + TIK +WD G R+R++ Y R + V D A Y+N+
Sbjct: 40 VEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERW 99
Query: 60 RSELHDLLSKPSLNGIPLLVLGNKID 85
EL D + + I + ++GNK D
Sbjct: 100 LKELRD----HADSNIVIXLVGNKSD 121
>pdb|1ZCA|A Chain A, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
pdb|1ZCA|B Chain B, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
Length = 359
Score = 33.1 bits (74), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 9/56 (16%)
Query: 10 RKVTKG---------NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNL 56
RK TKG + K+ D+GGQ R W + +++I+++V +++YD +
Sbjct: 183 RKATKGIVEHDFVIKKIPFKMVDVGGQRSQRQKWFQCFDGITSILFMVSSSEYDQV 238
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 33.1 bits (74), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
Query: 5 VGFNMRKVTKGNVTIK--LWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD---YDNLPVS 59
V F R + TIK +WD G R+R++ Y R + V D A Y+N+
Sbjct: 46 VEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERW 105
Query: 60 RSELHDLLSKPSLNGIPLLVLGNKID 85
EL D + + I + ++GNK D
Sbjct: 106 LKELRD----HADSNIVIXLVGNKSD 127
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 32.7 bits (73), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 19/123 (15%)
Query: 15 GNVTIKLWDLGGQPRFRSMWE-RYCRAVSAIVY--VVDAADYDNLPVSRSELHDLLSKPS 71
G + +WD G +F + + Y A AI+ V Y N+P +L +
Sbjct: 59 GEIKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCEN-- 116
Query: 72 LNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSIT---DREVCCYMISCKNSTNIDTVIDW 128
IP+++ GNK+D E ++ K+IT + + Y IS K++ N + W
Sbjct: 117 ---IPIVLCGNKVDVKE--------RKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLW 165
Query: 129 LVK 131
L +
Sbjct: 166 LAR 168
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 32.7 bits (73), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 12/113 (10%)
Query: 2 IPTV--GFNMRKVTKGN-VTIKLWDLGGQP---RFRSMWERYCRAVSAIVYVVDAADYDN 55
+PTV F+ V GN V + LWD GQ R R + R ++ A Y+N
Sbjct: 36 VPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYEN 95
Query: 56 LPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDRE 108
V++ + +L + G+P++++G K+D + K+ ++ G IT +
Sbjct: 96 --VAKKWIPEL--RHYAPGVPIILVGTKLDLRD--DKQFFIDHPGAVPITTNQ 142
>pdb|3CX6|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp
Length = 338
Score = 32.3 bits (72), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 63/131 (48%), Gaps = 20/131 (15%)
Query: 3 PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSE 62
PT G + NV K+ D+GG R W +V++I+++V ++++D + + +
Sbjct: 163 PTKGIHEYDFEIKNVPFKMVDVGGLRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQ 222
Query: 63 LHDLLSKPSLNGIPLLVLGNKIDKPEA----LSKEDLMEQ-MGLKSITD----------- 106
+ L SLN I ++ N++ + L+K DL+E+ + + SI D
Sbjct: 223 TNRLTE--SLN-IFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHC 279
Query: 107 -REVCCYMISC 116
R+V +++ C
Sbjct: 280 LRDVQKFLVEC 290
>pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|C Chain C, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 353
Score = 32.0 bits (71), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPV--- 58
+PT G +V ++ D+GGQ R W V++I+++V ++YD + V
Sbjct: 178 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 237
Query: 59 -------SRSELHDLLSKPSLNGIPLLVLGNKID 85
S++ +++ P +++ NK D
Sbjct: 238 NENRMEESKALFRTIITYPWFQNSSVILFLNKKD 271
>pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|2RGN|A Chain A, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|D Chain D, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 353
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPV--- 58
+PT G +V ++ D+GGQ R W V++I+++V ++YD + V
Sbjct: 178 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 237
Query: 59 -------SRSELHDLLSKPSLNGIPLLVLGNKID 85
S++ +++ P +++ NK D
Sbjct: 238 NENRMEESKALFRTIITYPWFQNSSVILFLNKKD 271
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 19 IKLWDLGGQPRFRSMWERYCRAVSA--IVY-VVDAADYDNLPVSRSELHDLLSK-PSLNG 74
+ + D GQ F +M E+Y R IVY V D A ++++ H L+ +
Sbjct: 63 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHV----DRFHQLILRVKDRES 118
Query: 75 IPLLVLGNKID 85
P++++ NK+D
Sbjct: 119 FPMILVANKVD 129
>pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 327
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPV--- 58
+PT G +V ++ D+GGQ R W V++I+++V ++YD + V
Sbjct: 152 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 211
Query: 59 -------SRSELHDLLSKPSLNGIPLLVLGNKID 85
S++ +++ P +++ NK D
Sbjct: 212 NENRMEESKALFRTIITYPWFQNSSVILFLNKKD 245
>pdb|1TND|A Chain A, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|B Chain B, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|C Chain C, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TAD|A Chain A, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|B Chain B, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|C Chain C, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAG|A Chain A, Structural Determinants For Activation Of The
Alpha-Subunit Of A Heterotrimeric G Protein
Length = 324
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 31/63 (49%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
+ T G + + ++ +++D+GGQ R W V+ I+++ + YD + V
Sbjct: 149 VKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTCIIFIAALSAYDMVLVEDD 208
Query: 62 ELH 64
E++
Sbjct: 209 EVN 211
>pdb|4EKC|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKC|C Chain C, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKD|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
Length = 347
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPV--- 58
+PT G +V ++ D+GGQ R W V++I+++V ++YD + V
Sbjct: 172 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 231
Query: 59 -------SRSELHDLLSKPSLNGIPLLVLGNKID 85
S++ +++ P +++ NK D
Sbjct: 232 NENRMEESKALFRTIITYPWFQNSSVILFLNKKD 265
>pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
Length = 355
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPV--- 58
+PT G +V ++ D+GGQ R W V++I+++V ++YD + V
Sbjct: 180 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 239
Query: 59 -------SRSELHDLLSKPSLNGIPLLVLGNKID 85
S++ +++ P +++ NK D
Sbjct: 240 NENRMEESKALFRTIITYPWFQNSSVILFLNKKD 273
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 19 IKLWDLGGQPRFRSMWERYCRAVSA--IVY-VVDAADYDNLPVSRSELHDLLSK-PSLNG 74
+ + D GQ F +M E+Y R IVY V D A ++++ H L+ +
Sbjct: 68 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHV----DRFHQLILRVKDRES 123
Query: 75 IPLLVLGNKID 85
P++++ NK+D
Sbjct: 124 FPMILVANKVD 134
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 19 IKLWDLGGQPRFRSMWERYCRAVSA--IVY-VVDAADYDNLPVSRSELHDLLSK-PSLNG 74
+ + D GQ F +M E+Y R IVY V D A ++++ H L+ +
Sbjct: 68 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHV----DRFHQLILRVKDRES 123
Query: 75 IPLLVLGNKID 85
P++++ NK+D
Sbjct: 124 FPMILVANKVD 134
>pdb|4FID|A Chain A, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
pdb|4FID|B Chain B, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
Length = 340
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 10/92 (10%)
Query: 4 TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD--------- 54
T G + ++ L D+GGQ R W + V ++V A+YD
Sbjct: 148 TTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDXKLYEDGNT 207
Query: 55 -NLPVSRSELHDLLSKPSLNGIPLLVLGNKID 85
L S + D+ + L G L+ NK D
Sbjct: 208 SRLTESIAVFKDIXTNEFLKGAVKLIFLNKXD 239
>pdb|3LLU|A Chain A, Crystal Structure Of The Nucleotide-Binding Domain Of Ras-
Related Gtp-Binding Protein C
Length = 196
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 7/41 (17%)
Query: 17 VTIKLWDLGGQ-----PRFRSMWERYCRAVSAIVYVVDAAD 52
V ++WD GQ P F +E R A++YV+DA D
Sbjct: 69 VNFQIWDFPGQMDFFDPTFD--YEMIFRGTGALIYVIDAQD 107
>pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1TL7|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 402
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 4 TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD 54
T G K V ++D+GGQ R W + V+AI++VV ++ Y+
Sbjct: 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYN 254
>pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 380
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 4 TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD 54
T G K V ++D+GGQ R W + V+AI++VV ++ Y+
Sbjct: 190 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYN 240
>pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 380
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 4 TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD 54
T G K V ++D+GGQ R W + V+AI++VV ++ Y+
Sbjct: 190 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYN 240
>pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|C Chain C, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|C Chain C, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3G82|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|C Chain C, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 394
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 4 TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD 54
T G K V ++D+GGQ R W + V+AI++VV ++ Y+
Sbjct: 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYN 254
>pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1AZT|A Chain A, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|1AZT|B Chain B, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|3C14|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
Length = 402
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 4 TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD 54
T G K V ++D+GGQ R W + V+AI++VV ++ Y+
Sbjct: 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYN 254
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 31.2 bits (69), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 11/124 (8%)
Query: 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76
V I + D GQ + ++ + Y R+ + V + ++ + +L +P
Sbjct: 62 VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP 121
Query: 77 LLVLGNKIDKPEALSKEDLMEQMGLKSITDR----EVCCYMISCKNSTNIDTVIDWLVKH 132
L++GNK D + Q+ ++ +R V S K N+D V L++
Sbjct: 122 FLLVGNKSDLEDK-------RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMRE 174
Query: 133 SKSK 136
+++
Sbjct: 175 IRAR 178
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 11/124 (8%)
Query: 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76
V I + D GQ + ++ + Y R+ + V + ++ + +L +P
Sbjct: 66 VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP 125
Query: 77 LLVLGNKIDKPEALSKEDLMEQMGLKSITDR----EVCCYMISCKNSTNIDTVIDWLVKH 132
L++GNK D + Q+ ++ +R V S K N+D V L++
Sbjct: 126 FLLVGNKSDLEDK-------RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMRE 178
Query: 133 SKSK 136
+++
Sbjct: 179 IRAR 182
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 11/124 (8%)
Query: 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76
V I + D GQ + ++ + Y R+ + V + ++ + +L +P
Sbjct: 54 VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP 113
Query: 77 LLVLGNKIDKPEALSKEDLMEQMGLKSITDR----EVCCYMISCKNSTNIDTVIDWLVKH 132
L++GNK D + Q+ ++ +R V S K N+D V L++
Sbjct: 114 FLLVGNKSDLEDK-------RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMRE 166
Query: 133 SKSK 136
+++
Sbjct: 167 IRAR 170
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 11/124 (8%)
Query: 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76
V I + D GQ + ++ + Y R+ + V + ++ + +L +P
Sbjct: 52 VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP 111
Query: 77 LLVLGNKIDKPEALSKEDLMEQMGLKSITDR----EVCCYMISCKNSTNIDTVIDWLVKH 132
L++GNK D + Q+ ++ +R V S K N+D V L++
Sbjct: 112 FLLVGNKSDLEDK-------RQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMRE 164
Query: 133 SKSK 136
+++
Sbjct: 165 IRAR 168
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 30.4 bits (67), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 41 VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 85
V+A+V+VVD + P EL KP + +P+L++GNK+D
Sbjct: 87 VNAVVWVVD---LRHPPTPEDELVARALKPLVGKVPILLVGNKLD 128
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 30.4 bits (67), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 60/137 (43%), Gaps = 24/137 (17%)
Query: 5 VGFNMRKVTKGNVTIK--LWDLGGQPRFRSMWERYCR-AVSA-IVY-VVDAADYDNLPVS 59
V F R + N IK +WD G R+R++ Y R AV A IVY + ++ Y+N
Sbjct: 45 VEFATRTIEVENKKIKAQIWDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHW 104
Query: 60 RSELHDLLSKPSLNGIPLLVLGNKID------KPEALSKEDLMEQMGLKSITDREVCCYM 113
+EL + + + + + ++GNK D P +K ME L + T
Sbjct: 105 LTELRE----NADDNVAVGLIGNKSDLAHLRAVPTDEAKNFAMENQMLFTET-------- 152
Query: 114 ISCKNSTNIDTVIDWLV 130
S NS N+D L+
Sbjct: 153 -SALNSDNVDKAFRELI 168
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 30.0 bits (66), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 53/112 (47%), Gaps = 13/112 (11%)
Query: 3 PTVGFNMRK--VTKGNV-TIKLWDLGGQPRFRSMWERYCRAVSAIVYVV---DAADYDNL 56
PT+ + RK V G + + D GGQ + +M ++Y R + V + ++++
Sbjct: 34 PTIEDSYRKQVVIDGETCLLDILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI 93
Query: 57 PVSRSELHDLLSKPSLNGIPLLVLGNKID----KPEALSKEDLMEQMGLKSI 104
R ++ + K S + +P++++GNK D E+ +DL G+ I
Sbjct: 94 HQYREQIKRV--KDS-DDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYI 142
>pdb|4ARZ|A Chain A, The Crystal Structure Of Gtr1p-Gtr2p Complexed With
Gtp-Gdp
Length = 310
Score = 29.6 bits (65), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 15 GNVTIKLWDLGGQPRFRSMW-----ERYCRAVSAIVYVVDA 50
GN+T+ LWD GGQ F + + + V +++V D
Sbjct: 53 GNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDV 93
>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
Initiation Complex
Length = 501
Score = 29.6 bits (65), Expect = 0.61, Method: Composition-based stats.
Identities = 37/119 (31%), Positives = 51/119 (42%), Gaps = 8/119 (6%)
Query: 12 VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPS 71
V N I D G F SM R +A +V VV AAD +P + + +
Sbjct: 46 VETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVV-AADDGVMP----QTIEAIQHAK 100
Query: 72 LNGIPLLVLGNKIDKPEA---LSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVID 127
+P++V NKIDKPEA K +L + L E +S K T ID ++D
Sbjct: 101 AAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLD 159
>pdb|3R7W|A Chain A, Crystal Structure Of Gtr1p-Gtr2p Complex
pdb|3R7W|C Chain C, Crystal Structure Of Gtr1p-Gtr2p Complex
Length = 307
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 15 GNVTIKLWDLGGQPRFRSMW-----ERYCRAVSAIVYVVDA 50
GN T+ LWD GGQ F + + + V +++V D
Sbjct: 50 GNXTLNLWDCGGQDVFXENYFTKQKDHIFQXVQVLIHVFDV 90
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 35 ERYCRAVSA--IVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 85
ERY A +VY VD+ + S EL L +K + IP L+LGNK+D
Sbjct: 86 ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLD 138
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 56/139 (40%), Gaps = 21/139 (15%)
Query: 3 PTVGFNMRK--VTKGNVTI-KLWDLGGQPRFRSMWERYCRAVSAIVYVV---DAADYDNL 56
PT+ + RK V G + + D GQ + +M ++Y R + V + ++++
Sbjct: 35 PTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI 94
Query: 57 PVSRSELHDLLSKPSLNGIPLLVLGNKIDKP----EALSKEDLMEQMGLKSITDREVCCY 112
R ++ + +P++++GNK D P + +DL G+ I
Sbjct: 95 HHYREQIKRVKDSED---VPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIE------- 144
Query: 113 MISCKNSTNIDTVIDWLVK 131
S K +D LV+
Sbjct: 145 -TSAKTRQGVDDAFYTLVR 162
>pdb|3T1T|A Chain A, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|B Chain B, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|C Chain C, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|D Chain D, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1V|A Chain A, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|B Chain B, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|C Chain C, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|D Chain D, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
Length = 198
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 19 IKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD---YDNLPVSRSELHDLLSKP-SLNG 74
L+ + GQ + + + R V IV+V D+A N R+ +L +L+
Sbjct: 76 FHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESXRNXRENLAEYGLTLDD 135
Query: 75 IPLLVLGNKIDKPEALSKE 93
+P+++ NK D P+AL E
Sbjct: 136 VPIVIQVNKRDLPDALPVE 154
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Query: 3 PTVGFNMRK--VTKGNV-TIKLWDLGGQPRFRSMWERYCRAVSAIVYVV---DAADYDNL 56
PT+ + RK V G + + D GQ + +M ++Y R + V ++ + ++
Sbjct: 52 PTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADI 111
Query: 57 PVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 87
+ R ++ + K S + +P++++GNK D P
Sbjct: 112 NLYREQIKRV--KDS-DDVPMVLVGNKCDLP 139
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/115 (18%), Positives = 50/115 (43%), Gaps = 5/115 (4%)
Query: 19 IKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78
+++ D G +F SM + Y + + V + + + ++ +P++
Sbjct: 53 LEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVI 112
Query: 79 VLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYM-ISCKNSTNIDTVIDWLVKH 132
++GNK+D L E + +++ + C +M S K+ T +D + +V+
Sbjct: 113 LVGNKVD----LESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQ 163
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Query: 2 IPTVGFNMRKVT---KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPV 58
IPT+ R+V K T+++ D G +F +M A + V +L
Sbjct: 38 IPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLE- 96
Query: 59 SRSELHDLLS--KPSLNGIPLLVLGNKIDKPE 88
++ L+ K S+ IP++++GNK D+ +
Sbjct: 97 ELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ 128
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 56/139 (40%), Gaps = 21/139 (15%)
Query: 3 PTVGFNMRK--VTKGNV-TIKLWDLGGQPRFRSMWERYCRAVSAIVYVV---DAADYDNL 56
PT+ + RK V G + + D GQ + +M ++Y R + V + ++++
Sbjct: 35 PTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI 94
Query: 57 PVSRSELHDLLSKPSLNGIPLLVLGNKIDKP----EALSKEDLMEQMGLKSITDREVCCY 112
R ++ + +P++++GNK D P + +DL G+ I
Sbjct: 95 HHYREQIKRVKDSED---VPMVLVGNKSDLPSRTVDTKQAQDLARSYGIPFIE------- 144
Query: 113 MISCKNSTNIDTVIDWLVK 131
S K +D LV+
Sbjct: 145 -TSAKTRQGVDDAFYTLVR 162
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 56/139 (40%), Gaps = 21/139 (15%)
Query: 3 PTVGFNMRK--VTKGNV-TIKLWDLGGQPRFRSMWERYCRAVSAIVYVV---DAADYDNL 56
PT+ + RK V G + + D GQ + +M ++Y R + V + ++++
Sbjct: 35 PTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI 94
Query: 57 PVSRSELHDLLSKPSLNGIPLLVLGNKIDKP----EALSKEDLMEQMGLKSITDREVCCY 112
R ++ + +P++++GNK D P + +DL G+ I
Sbjct: 95 HHYREQIKRVKDSED---VPMVLVGNKSDLPSRTVDTKQAQDLARSYGIPFIE------- 144
Query: 113 MISCKNSTNIDTVIDWLVK 131
S K +D LV+
Sbjct: 145 -TSAKTRQGVDDAFYTLVR 162
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 56/139 (40%), Gaps = 21/139 (15%)
Query: 3 PTVGFNMRK--VTKGNV-TIKLWDLGGQPRFRSMWERYCRAVSAIVYVV---DAADYDNL 56
PT+ + RK V G + + D GQ + +M ++Y R + V + ++++
Sbjct: 35 PTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI 94
Query: 57 PVSRSELHDLLSKPSLNGIPLLVLGNKIDKP----EALSKEDLMEQMGLKSITDREVCCY 112
R ++ + +P++++GNK D P + +DL G+ I
Sbjct: 95 HHYREQIKRVKDSED---VPMVLVGNKSDLPSRTVDTKQAQDLARSYGIPFIE------- 144
Query: 113 MISCKNSTNIDTVIDWLVK 131
S K +D LV+
Sbjct: 145 -TSAKTRQGVDDAFYTLVR 162
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/124 (18%), Positives = 49/124 (39%), Gaps = 11/124 (8%)
Query: 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76
V I + D G + ++ + Y R+ + V + ++ + +L +P
Sbjct: 54 VQIDILDTAGLEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP 113
Query: 77 LLVLGNKIDKPEALSKEDLMEQMGLKSITDR----EVCCYMISCKNSTNIDTVIDWLVKH 132
L++GNK D + Q+ ++ +R V S K N+D V L++
Sbjct: 114 FLLVGNKSDLEDK-------RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMRE 166
Query: 133 SKSK 136
+++
Sbjct: 167 IRAR 170
>pdb|2QTF|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus
pdb|2QTH|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus In
Complex With Gdp
pdb|3KXI|A Chain A, Crystal Structure Of Ssgbp And Gdp Complex
Length = 364
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 43 AIVYVVDAADYDNLPV-SRSELHDLLSKPSLNGIPLLVLGNKIDK--PEALSKEDLMEQM 99
A++ V+D+ +NL + + ++L + ++G P+LV NKIDK + K DL+E++
Sbjct: 260 ALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKL 319
>pdb|3KXL|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235s
pdb|3KXL|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235s
Length = 364
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 43 AIVYVVDAADYDNLPV-SRSELHDLLSKPSLNGIPLLVLGNKIDK--PEALSKEDLMEQM 99
A++ V+D+ +NL + + ++L + ++G P+LV NKIDK + K DL+E++
Sbjct: 260 ALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKL 319
>pdb|3I6X|A Chain A, Crystal Structure Of The Calponin Homology Domain Of
Iqgap1
pdb|3I6X|B Chain B, Crystal Structure Of The Calponin Homology Domain Of
Iqgap1
pdb|3I6X|C Chain C, Crystal Structure Of The Calponin Homology Domain Of
Iqgap1
pdb|3I6X|D Chain D, Crystal Structure Of The Calponin Homology Domain Of
Iqgap1
Length = 193
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 10/57 (17%)
Query: 73 NGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWL 129
NG+ L LGN P+ +S LK I DRE Y + + + D VI WL
Sbjct: 76 NGVYLAKLGNFF-SPKVVS---------LKKIYDREQTRYKATGLHFRHTDNVIQWL 122
>pdb|3KXK|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235p
pdb|3KXK|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235p
Length = 364
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 43 AIVYVVDAADYDNLPV-SRSELHDLLSKPSLNGIPLLVLGNKIDK--PEALSKEDLMEQM 99
A++ V+D+ +NL + + ++L + ++G P+LV NKIDK + K DL+E++
Sbjct: 260 ALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKL 319
>pdb|2RR8|A Chain A, Solution Structure Of Calponin Homology Domain Of Iqgap1
Length = 190
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 10/57 (17%)
Query: 73 NGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWL 129
NG+ L LGN P+ +S LK I DRE Y + + + D VI WL
Sbjct: 54 NGVYLAKLGNFFS-PKVVS---------LKKIYDREQTRYKATGLHFRHTDNVIQWL 100
>pdb|3T12|A Chain A, Mgla In Complex With Mglb In Transition State
pdb|3T1O|A Chain A, Mgla Bound To Gdp
pdb|3T1O|B Chain B, Mgla Bound To Gdp
pdb|3T1Q|A Chain A, Mgla Bound To Gppnhp In Complex With Mglb
Length = 198
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 19 IKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAA------DYDNLPVSRSELHDLLSKPSL 72
L+ + GQ + + + R V IV+V D+A + +++ R L + +L
Sbjct: 76 FHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEY--GLTL 133
Query: 73 NGIPLLVLGNKIDKPEALSKE 93
+ +P+++ NK D P+AL E
Sbjct: 134 DDVPIVIQVNKRDLPDALPVE 154
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Query: 2 IPTVGFNMRKVT---KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPV 58
IPTV R+V K T+++ D G +F +M A + V +L
Sbjct: 33 IPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEE 92
Query: 59 SRSELHDLLS-KPSLNGIPLLVLGNKIDK 86
+ + K + IP++++GNK D+
Sbjct: 93 LKPIYEQICEIKGDVESIPIMLVGNKCDE 121
>pdb|1K68|A Chain A, Crystal Structure Of The Phosphorylated Cyanobacterial
Phytochrome Response Regulator Rcpa
pdb|1K68|B Chain B, Crystal Structure Of The Phosphorylated Cyanobacterial
Phytochrome Response Regulator Rcpa
Length = 140
Score = 25.8 bits (55), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 14/74 (18%)
Query: 55 NLPV--SRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCY 112
NLP R L ++ S P+L IP++VL I++ + DL V CY
Sbjct: 64 NLPKKDGREVLAEIKSDPTLKRIPVVVLSTSINEDDIFHSYDL------------HVNCY 111
Query: 113 MISCKNSTNIDTVI 126
+ N + + ++
Sbjct: 112 ITKSANLSQLFQIV 125
>pdb|4ARZ|B Chain B, The Crystal Structure Of Gtr1p-Gtr2p Complexed With
Gtp-Gdp
Length = 341
Score = 25.8 bits (55), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 7/41 (17%)
Query: 17 VTIKLWDLGGQ-----PRFRSMWERYCRAVSAIVYVVDAAD 52
+ + + +L GQ P + S ER ++V A+VYV+D+ D
Sbjct: 56 IDLAVMELPGQLNYFEPSYDS--ERLFKSVGALVYVIDSQD 94
>pdb|1IQ0|A Chain A, Thermus Thermophilus Arginyl-Trna Synthetase
Length = 592
Score = 25.8 bits (55), Expect = 8.0, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 69 KPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREV 109
KP G+PL L ++ KP ++L +++ L + V
Sbjct: 32 KPGDYGVPLFALAKELRKPPQAIAQELKDRLPLPEFVEEAV 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,003,232
Number of Sequences: 62578
Number of extensions: 146636
Number of successful extensions: 625
Number of sequences better than 100.0: 261
Number of HSP's better than 100.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 398
Number of HSP's gapped (non-prelim): 261
length of query: 137
length of database: 14,973,337
effective HSP length: 89
effective length of query: 48
effective length of database: 9,403,895
effective search space: 451386960
effective search space used: 451386960
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)