Query 032598
Match_columns 137
No_of_seqs 105 out of 1835
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 03:31:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032598.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032598hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 1E-30 2.2E-35 164.0 11.4 128 1-136 38-174 (205)
2 PLN00223 ADP-ribosylation fact 100.0 1.4E-29 3.1E-34 162.5 16.1 136 1-136 45-180 (181)
3 KOG0070 GTP-binding ADP-ribosy 100.0 7.4E-30 1.6E-34 158.9 13.7 137 1-137 45-181 (181)
4 KOG0075 GTP-binding ADP-ribosy 100.0 8.2E-29 1.8E-33 148.8 15.0 135 1-135 49-183 (186)
5 smart00177 ARF ARF-like small 100.0 1.3E-28 2.8E-33 157.3 15.8 134 1-134 41-174 (175)
6 cd04150 Arf1_5_like Arf1-Arf5- 100.0 1.2E-28 2.5E-33 155.3 15.4 131 1-131 28-158 (159)
7 KOG0071 GTP-binding ADP-ribosy 100.0 8.4E-29 1.8E-33 147.8 12.9 135 1-135 45-179 (180)
8 cd04149 Arf6 Arf6 subfamily. 100.0 2.9E-28 6.3E-33 154.8 15.7 131 1-131 37-167 (168)
9 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 8.1E-29 1.8E-33 155.3 11.8 131 1-134 51-185 (221)
10 PTZ00133 ADP-ribosylation fact 100.0 5.9E-28 1.3E-32 155.1 15.9 135 1-135 45-179 (182)
11 KOG0078 GTP-binding protein SE 100.0 1.4E-28 3.1E-33 156.2 12.1 126 1-135 41-175 (207)
12 PF00025 Arf: ADP-ribosylation 100.0 8.6E-28 1.9E-32 153.5 13.0 133 1-133 42-175 (175)
13 KOG0092 GTPase Rab5/YPT51 and 100.0 2E-28 4.4E-33 153.2 9.6 125 2-135 35-168 (200)
14 cd04158 ARD1 ARD1 subfamily. 100.0 5.9E-27 1.3E-31 148.9 16.2 135 1-135 27-162 (169)
15 cd04157 Arl6 Arl6 subfamily. 100.0 1.2E-26 2.7E-31 146.1 15.8 131 1-131 29-161 (162)
16 cd04161 Arl2l1_Arl13_like Arl2 100.0 1.3E-26 2.9E-31 147.0 15.9 131 1-131 27-166 (167)
17 cd04154 Arl2 Arl2 subfamily. 100.0 1.4E-26 2.9E-31 147.7 15.1 131 1-131 42-172 (173)
18 cd04151 Arl1 Arl1 subfamily. 100.0 2.2E-26 4.8E-31 144.7 15.4 130 2-131 28-157 (158)
19 cd04120 Rab12 Rab12 subfamily. 99.9 7.5E-27 1.6E-31 152.0 13.3 131 1-135 29-164 (202)
20 KOG0073 GTP-binding ADP-ribosy 99.9 1.5E-26 3.3E-31 141.3 13.1 136 1-136 44-180 (185)
21 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 5E-26 1.1E-30 145.2 15.4 131 1-131 43-173 (174)
22 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 3.2E-26 7E-31 144.9 14.2 129 1-131 28-163 (164)
23 PTZ00099 rab6; Provisional 99.9 1.6E-26 3.4E-31 147.6 12.6 129 1-135 9-143 (176)
24 cd01875 RhoG RhoG subfamily. 99.9 2.5E-26 5.3E-31 148.7 12.2 133 1-135 32-178 (191)
25 cd04121 Rab40 Rab40 subfamily. 99.9 7.3E-26 1.6E-30 146.1 14.1 128 2-135 36-168 (189)
26 cd04160 Arfrp1 Arfrp1 subfamil 99.9 2.3E-25 5E-30 141.0 15.1 131 1-131 34-166 (167)
27 KOG0072 GTP-binding ADP-ribosy 99.9 3E-26 6.6E-31 137.4 10.0 136 1-136 46-181 (182)
28 cd04133 Rop_like Rop subfamily 99.9 3E-26 6.5E-31 146.4 10.8 129 1-135 30-174 (176)
29 smart00176 RAN Ran (Ras-relate 99.9 8E-26 1.7E-30 147.0 12.7 128 1-135 24-155 (200)
30 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 1.2E-25 2.7E-30 143.2 12.9 131 1-135 31-165 (172)
31 smart00178 SAR Sar1p-like memb 99.9 6.5E-25 1.4E-29 141.3 15.5 131 2-132 46-183 (184)
32 KOG0087 GTPase Rab11/YPT3, sma 99.9 3.3E-26 7.2E-31 145.2 9.2 126 3-133 45-175 (222)
33 KOG0098 GTPase Rab2, small G p 99.9 6.3E-26 1.4E-30 141.4 10.3 123 3-134 37-168 (216)
34 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 6.7E-25 1.5E-29 141.1 15.1 134 2-135 32-171 (183)
35 KOG0080 GTPase Rab18, small G 99.9 3.2E-26 7E-31 139.7 8.1 124 4-135 43-175 (209)
36 cd04156 ARLTS1 ARLTS1 subfamil 99.9 9.2E-25 2E-29 137.4 14.9 130 2-131 28-159 (160)
37 KOG0086 GTPase Rab4, small G p 99.9 1.5E-25 3.3E-30 135.9 10.6 130 2-135 39-172 (214)
38 cd00878 Arf_Arl Arf (ADP-ribos 99.9 1.5E-24 3.2E-29 136.2 15.6 131 1-131 27-157 (158)
39 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 1.5E-25 3.3E-30 143.8 11.3 125 1-134 34-180 (182)
40 cd00879 Sar1 Sar1 subfamily. 99.9 1.8E-24 3.8E-29 139.7 16.1 133 1-133 47-190 (190)
41 KOG0083 GTPase Rab26/Rab37, sm 99.9 3.8E-26 8.3E-31 135.6 6.7 125 2-135 28-161 (192)
42 KOG0093 GTPase Rab3, small G p 99.9 2.8E-25 6.1E-30 133.8 10.0 124 3-135 52-184 (193)
43 cd04131 Rnd Rnd subfamily. Th 99.9 4.2E-25 9E-30 141.4 11.0 125 1-134 30-176 (178)
44 cd04127 Rab27A Rab27a subfamil 99.9 2E-24 4.3E-29 138.3 13.9 112 16-135 62-178 (180)
45 cd04175 Rap1 Rap1 subgroup. T 99.9 9.7E-25 2.1E-29 137.9 12.3 126 1-134 30-163 (164)
46 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 6.4E-25 1.4E-29 145.3 11.8 125 1-135 42-189 (232)
47 cd04126 Rab20 Rab20 subfamily. 99.9 1.6E-24 3.5E-29 142.6 13.4 133 1-134 28-190 (220)
48 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 2.2E-24 4.8E-29 140.5 13.8 131 1-135 29-169 (201)
49 PTZ00369 Ras-like protein; Pro 99.9 1.4E-24 3.1E-29 140.2 12.6 130 1-135 34-168 (189)
50 cd00877 Ran Ran (Ras-related n 99.9 1.7E-24 3.6E-29 137.3 12.3 128 1-135 29-160 (166)
51 cd04159 Arl10_like Arl10-like 99.9 9.9E-24 2.1E-28 131.9 15.7 131 1-131 28-158 (159)
52 cd01874 Cdc42 Cdc42 subfamily. 99.9 2.4E-24 5.3E-29 137.6 13.1 131 1-133 30-174 (175)
53 PLN03071 GTP-binding nuclear p 99.9 1.5E-24 3.3E-29 143.0 12.3 128 1-135 42-173 (219)
54 KOG0394 Ras-related GTPase [Ge 99.9 1.8E-25 3.9E-30 139.1 7.3 131 2-135 39-179 (210)
55 cd04122 Rab14 Rab14 subfamily. 99.9 3E-24 6.4E-29 136.0 12.9 128 2-135 32-165 (166)
56 cd04155 Arl3 Arl3 subfamily. 99.9 9.3E-24 2E-28 134.4 15.2 130 2-131 43-172 (173)
57 cd04144 Ras2 Ras2 subfamily. 99.9 2.2E-24 4.7E-29 139.5 12.1 132 1-136 28-165 (190)
58 cd04136 Rap_like Rap-like subf 99.9 2.7E-24 6E-29 135.5 12.1 128 2-133 31-162 (163)
59 cd04128 Spg1 Spg1p. Spg1p (se 99.9 2.1E-24 4.5E-29 138.7 11.2 129 1-135 29-167 (182)
60 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 4.6E-24 1E-28 135.7 12.3 131 1-135 29-166 (170)
61 KOG0079 GTP-binding protein H- 99.9 2.3E-24 4.9E-29 130.0 10.1 128 1-134 37-169 (198)
62 KOG0091 GTPase Rab39, small G 99.9 1.9E-24 4E-29 132.4 9.2 125 2-134 38-173 (213)
63 cd04117 Rab15 Rab15 subfamily. 99.9 1.8E-23 3.8E-28 131.9 13.9 127 1-132 29-160 (161)
64 cd04176 Rap2 Rap2 subgroup. T 99.9 7.6E-24 1.6E-28 133.6 11.8 128 2-133 31-162 (163)
65 cd04145 M_R_Ras_like M-Ras/R-R 99.9 1.4E-23 3.1E-28 132.3 13.0 127 2-133 32-163 (164)
66 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 7.6E-24 1.7E-28 139.5 12.0 126 1-135 30-177 (222)
67 cd04134 Rho3 Rho3 subfamily. 99.9 6.8E-24 1.5E-28 137.1 11.3 133 1-135 29-175 (189)
68 cd01865 Rab3 Rab3 subfamily. 99.9 1.7E-23 3.7E-28 132.4 12.8 126 1-135 30-164 (165)
69 cd01871 Rac1_like Rac1-like su 99.9 1.2E-23 2.5E-28 134.3 11.9 130 1-132 30-173 (174)
70 cd01867 Rab8_Rab10_Rab13_like 99.9 2.2E-23 4.7E-28 132.2 13.0 129 1-135 32-166 (167)
71 cd04119 RJL RJL (RabJ-Like) su 99.9 1.2E-23 2.7E-28 132.9 11.6 129 1-134 29-167 (168)
72 KOG0095 GTPase Rab30, small G 99.9 3.5E-24 7.5E-29 129.6 8.2 127 3-134 38-169 (213)
73 KOG0081 GTPase Rab27, small G 99.9 9.1E-24 2E-28 128.9 10.0 126 2-135 39-182 (219)
74 cd04138 H_N_K_Ras_like H-Ras/N 99.9 1.8E-23 3.9E-28 131.4 11.7 127 2-133 31-161 (162)
75 cd01873 RhoBTB RhoBTB subfamil 99.9 8.2E-24 1.8E-28 137.2 10.0 113 12-132 61-194 (195)
76 cd04109 Rab28 Rab28 subfamily. 99.9 6.4E-23 1.4E-27 134.9 14.3 131 1-135 29-167 (215)
77 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 5E-23 1.1E-27 130.3 12.8 128 2-135 32-165 (166)
78 cd04112 Rab26 Rab26 subfamily. 99.9 5.1E-23 1.1E-27 133.2 12.8 130 1-136 30-165 (191)
79 smart00173 RAS Ras subfamily o 99.9 5.4E-23 1.2E-27 129.8 12.6 126 2-135 30-163 (164)
80 KOG0076 GTP-binding ADP-ribosy 99.9 4.6E-24 1E-28 131.7 7.1 135 2-136 54-189 (197)
81 cd04111 Rab39 Rab39 subfamily. 99.9 6E-23 1.3E-27 134.7 12.8 130 2-135 32-167 (211)
82 cd04140 ARHI_like ARHI subfami 99.9 7.2E-23 1.6E-27 129.5 12.3 128 1-132 30-163 (165)
83 cd04110 Rab35 Rab35 subfamily. 99.9 9.4E-23 2E-27 132.7 13.0 128 1-135 35-168 (199)
84 cd04124 RabL2 RabL2 subfamily. 99.9 7.4E-23 1.6E-27 129.1 11.8 118 12-137 44-161 (161)
85 cd04116 Rab9 Rab9 subfamily. 99.9 7E-23 1.5E-27 130.1 11.7 127 2-132 35-169 (170)
86 cd01864 Rab19 Rab19 subfamily. 99.9 2.7E-22 5.9E-27 126.8 14.3 123 2-132 33-164 (165)
87 cd04143 Rhes_like Rhes_like su 99.9 2.7E-22 5.9E-27 134.2 14.9 129 1-133 29-170 (247)
88 cd04103 Centaurin_gamma Centau 99.9 3.2E-23 6.9E-28 130.4 9.8 122 3-132 31-157 (158)
89 cd04106 Rab23_lke Rab23-like s 99.9 1.4E-22 3E-27 127.6 12.5 121 2-132 30-161 (162)
90 smart00174 RHO Rho (Ras homolo 99.9 1.1E-22 2.3E-27 129.6 11.6 125 2-135 28-173 (174)
91 cd04115 Rab33B_Rab33A Rab33B/R 99.9 1.8E-22 3.9E-27 128.3 12.5 129 2-134 32-169 (170)
92 PLN03110 Rab GTPase; Provision 99.9 1.7E-22 3.8E-27 133.0 12.5 130 1-135 41-175 (216)
93 KOG0088 GTPase Rab21, small G 99.9 9.2E-24 2E-28 128.8 5.8 114 13-135 58-176 (218)
94 cd04125 RabA_like RabA-like su 99.9 2.4E-22 5.2E-27 129.7 12.7 130 1-135 29-163 (188)
95 cd04177 RSR1 RSR1 subgroup. R 99.9 3.6E-22 7.8E-27 126.7 12.2 130 1-133 30-163 (168)
96 cd01868 Rab11_like Rab11-like. 99.9 9.3E-22 2E-26 124.3 13.8 126 2-133 33-164 (165)
97 cd04101 RabL4 RabL4 (Rab-like4 99.9 7.5E-22 1.6E-26 124.5 13.4 126 2-133 32-163 (164)
98 cd04132 Rho4_like Rho4-like su 99.9 4.4E-22 9.6E-27 128.2 12.2 126 1-135 29-168 (187)
99 cd01866 Rab2 Rab2 subfamily. 99.9 7.8E-22 1.7E-26 125.2 12.9 128 2-135 34-167 (168)
100 cd04113 Rab4 Rab4 subfamily. 99.9 2.7E-22 5.9E-27 126.3 10.4 126 2-133 30-161 (161)
101 KOG0395 Ras-related GTPase [Ge 99.9 8.2E-22 1.8E-26 127.5 12.8 131 1-135 32-166 (196)
102 cd04118 Rab24 Rab24 subfamily. 99.9 1.2E-21 2.5E-26 126.9 13.1 128 1-135 30-167 (193)
103 cd01892 Miro2 Miro2 subfamily. 99.9 2.1E-21 4.5E-26 123.4 13.1 124 1-134 34-166 (169)
104 KOG0074 GTP-binding ADP-ribosy 99.9 2.6E-22 5.5E-27 120.3 8.1 133 2-134 46-179 (185)
105 PLN03108 Rab family protein; P 99.9 1.9E-21 4.2E-26 127.5 13.0 128 2-135 36-169 (210)
106 PLN03118 Rab family protein; P 99.9 2.8E-21 6E-26 126.9 13.5 129 2-135 43-178 (211)
107 cd04147 Ras_dva Ras-dva subfam 99.9 1.8E-21 3.8E-26 126.6 12.3 129 2-134 29-163 (198)
108 cd01863 Rab18 Rab18 subfamily. 99.9 2.6E-21 5.6E-26 121.8 12.3 126 2-132 30-160 (161)
109 PF00071 Ras: Ras family; Int 99.9 1.1E-21 2.4E-26 123.5 10.6 125 1-134 28-161 (162)
110 smart00175 RAB Rab subfamily o 99.9 6.1E-21 1.3E-25 120.2 13.9 128 2-135 30-163 (164)
111 cd04142 RRP22 RRP22 subfamily. 99.9 1.1E-21 2.3E-26 127.6 10.6 132 1-135 29-175 (198)
112 cd01861 Rab6 Rab6 subfamily. 99.9 7.3E-21 1.6E-25 119.6 13.5 126 2-133 30-161 (161)
113 cd01860 Rab5_related Rab5-rela 99.9 3E-21 6.6E-26 121.6 11.6 126 2-133 31-162 (163)
114 cd01862 Rab7 Rab7 subfamily. 99.9 7.3E-21 1.6E-25 120.8 13.2 130 3-136 31-169 (172)
115 KOG0097 GTPase Rab14, small G 99.9 2.2E-21 4.8E-26 116.6 10.0 125 4-133 43-172 (215)
116 cd04139 RalA_RalB RalA/RalB su 99.9 6.6E-21 1.4E-25 120.0 12.4 115 13-135 44-163 (164)
117 cd04146 RERG_RasL11_like RERG/ 99.9 3.1E-21 6.6E-26 122.0 10.9 115 12-134 42-164 (165)
118 cd01870 RhoA_like RhoA-like su 99.9 3.4E-21 7.5E-26 122.8 10.9 131 1-133 30-174 (175)
119 cd04148 RGK RGK subfamily. Th 99.9 2.1E-20 4.5E-25 123.5 13.8 127 2-134 31-163 (221)
120 cd04135 Tc10 TC10 subfamily. 99.9 7.9E-21 1.7E-25 121.0 11.2 130 2-133 30-173 (174)
121 cd04130 Wrch_1 Wrch-1 subfamil 99.9 6.7E-21 1.4E-25 121.4 10.5 113 14-131 45-171 (173)
122 KOG0393 Ras-related small GTPa 99.9 4.4E-21 9.6E-26 122.4 8.7 126 1-135 33-180 (198)
123 cd04123 Rab21 Rab21 subfamily. 99.8 3.4E-20 7.5E-25 116.4 11.7 113 15-133 47-161 (162)
124 cd04114 Rab30 Rab30 subfamily. 99.8 1.4E-19 3.1E-24 114.7 14.3 113 16-133 55-168 (169)
125 cd00154 Rab Rab family. Rab G 99.8 8E-20 1.7E-24 114.0 12.4 124 2-131 30-159 (159)
126 cd01893 Miro1 Miro1 subfamily. 99.8 1.6E-20 3.4E-25 118.9 9.2 116 12-135 42-165 (166)
127 PTZ00132 GTP-binding nuclear p 99.8 9.9E-20 2.1E-24 119.8 13.1 128 1-135 38-169 (215)
128 cd01890 LepA LepA subfamily. 99.8 1.6E-19 3.4E-24 115.5 13.6 111 13-133 63-176 (179)
129 cd04137 RheB Rheb (Ras Homolog 99.8 9.3E-20 2E-24 116.7 12.0 129 2-135 31-164 (180)
130 cd00876 Ras Ras family. The R 99.8 8.3E-19 1.8E-23 109.9 13.1 113 16-133 46-160 (160)
131 cd01897 NOG NOG1 is a nucleola 99.8 1.3E-18 2.8E-23 110.2 14.0 123 4-133 34-167 (168)
132 cd04129 Rho2 Rho2 subfamily. 99.8 2.2E-19 4.7E-24 115.8 10.4 125 2-135 31-174 (187)
133 cd04102 RabL3 RabL3 (Rab-like3 99.8 1.1E-18 2.3E-23 113.7 13.6 90 1-90 29-145 (202)
134 cd00157 Rho Rho (Ras homology) 99.8 2.7E-19 5.9E-24 113.4 10.2 112 14-131 45-170 (171)
135 cd04171 SelB SelB subfamily. 99.8 1.3E-18 2.7E-23 109.6 10.8 122 4-131 37-163 (164)
136 cd01898 Obg Obg subfamily. Th 99.8 2.4E-18 5.3E-23 109.0 12.0 121 9-132 39-169 (170)
137 PRK12299 obgE GTPase CgtA; Rev 99.8 1E-17 2.2E-22 116.4 13.7 129 3-135 191-329 (335)
138 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 3.1E-17 6.6E-22 103.7 12.7 115 16-135 49-167 (168)
139 cd00881 GTP_translation_factor 99.8 1.7E-16 3.8E-21 101.9 15.7 123 7-134 52-187 (189)
140 cd01879 FeoB Ferrous iron tran 99.8 7.8E-17 1.7E-21 100.9 13.6 116 4-134 30-157 (158)
141 TIGR02729 Obg_CgtA Obg family 99.7 5.3E-17 1.2E-21 112.7 13.2 127 3-133 190-328 (329)
142 cd01881 Obg_like The Obg-like 99.7 2.3E-17 5.1E-22 104.9 10.6 127 3-132 29-175 (176)
143 cd01878 HflX HflX subfamily. 99.7 9.3E-17 2E-21 104.8 13.4 121 3-133 74-204 (204)
144 cd01891 TypA_BipA TypA (tyrosi 99.7 8.7E-17 1.9E-21 104.3 13.1 108 11-123 59-171 (194)
145 TIGR01393 lepA GTP-binding pro 99.7 1.2E-16 2.7E-21 118.2 14.8 109 16-134 69-180 (595)
146 cd01894 EngA1 EngA1 subfamily. 99.7 1.8E-16 3.9E-21 99.0 13.5 114 8-133 36-157 (157)
147 TIGR03156 GTP_HflX GTP-binding 99.7 1.2E-16 2.5E-21 111.9 13.9 120 2-132 221-350 (351)
148 cd01889 SelB_euk SelB subfamil 99.7 1.1E-16 2.3E-21 103.7 12.6 113 16-133 67-185 (192)
149 cd01888 eIF2_gamma eIF2-gamma 99.7 4.5E-17 9.8E-22 106.3 10.0 113 17-134 83-199 (203)
150 cd00882 Ras_like_GTPase Ras-li 99.7 7.7E-17 1.7E-21 99.3 10.0 112 16-131 44-157 (157)
151 PF00009 GTP_EFTU: Elongation 99.7 7.4E-16 1.6E-20 99.5 14.6 124 5-133 56-186 (188)
152 PLN00023 GTP-binding protein; 99.7 6.1E-17 1.3E-21 110.9 9.8 89 1-89 50-166 (334)
153 PRK05433 GTP-binding protein L 99.7 5.2E-16 1.1E-20 115.0 15.4 110 15-134 72-184 (600)
154 PRK03003 GTP-binding protein D 99.7 4.5E-16 9.8E-21 112.9 14.5 120 10-134 252-382 (472)
155 TIGR00231 small_GTP small GTP- 99.7 7.4E-16 1.6E-20 95.8 13.4 123 3-130 32-160 (161)
156 COG2229 Predicted GTPase [Gene 99.7 6.1E-16 1.3E-20 96.9 12.5 121 4-132 54-176 (187)
157 TIGR03594 GTPase_EngA ribosome 99.7 4.3E-16 9.4E-21 111.9 13.2 119 11-134 214-344 (429)
158 PRK03003 GTP-binding protein D 99.7 8.1E-16 1.7E-20 111.6 14.5 114 10-135 79-200 (472)
159 PRK15494 era GTPase Era; Provi 99.7 1.3E-15 2.8E-20 106.3 14.4 118 8-135 91-217 (339)
160 PRK04213 GTP-binding protein; 99.7 8.2E-16 1.8E-20 100.1 12.5 114 18-135 53-193 (201)
161 PRK12296 obgE GTPase CgtA; Rev 99.7 5.8E-16 1.3E-20 111.8 12.9 129 2-135 191-341 (500)
162 PRK05291 trmE tRNA modificatio 99.7 6.6E-16 1.4E-20 111.3 13.0 110 7-134 253-370 (449)
163 PRK12297 obgE GTPase CgtA; Rev 99.7 1.6E-15 3.5E-20 108.1 14.6 125 3-135 191-328 (424)
164 cd04105 SR_beta Signal recogni 99.7 1.2E-15 2.5E-20 99.7 12.7 117 15-131 46-202 (203)
165 KOG3883 Ras family small GTPas 99.7 9.7E-16 2.1E-20 93.4 10.8 130 1-134 40-175 (198)
166 cd00066 G-alpha G protein alph 99.7 3.2E-16 6.9E-21 108.5 9.6 135 2-136 146-313 (317)
167 smart00275 G_alpha G protein a 99.7 6.9E-16 1.5E-20 107.7 11.2 134 2-135 169-335 (342)
168 TIGR02528 EutP ethanolamine ut 99.7 4.7E-16 1E-20 96.0 9.2 98 20-130 38-141 (142)
169 cd04164 trmE TrmE (MnmE, ThdF, 99.7 4.6E-15 9.9E-20 92.5 13.4 108 9-133 41-156 (157)
170 TIGR00487 IF-2 translation ini 99.7 3.5E-15 7.5E-20 110.3 13.7 115 11-131 128-247 (587)
171 PRK05306 infB translation init 99.7 4E-15 8.6E-20 112.6 14.1 117 10-132 330-450 (787)
172 KOG4252 GTP-binding protein [S 99.7 1.2E-17 2.6E-22 104.2 0.5 113 12-134 64-181 (246)
173 TIGR00475 selB selenocysteine- 99.7 5.2E-16 1.1E-20 114.8 9.0 123 6-134 39-166 (581)
174 TIGR00436 era GTP-binding prot 99.7 8.1E-15 1.7E-19 99.6 13.8 114 13-135 44-165 (270)
175 CHL00189 infB translation init 99.7 6E-15 1.3E-19 110.8 14.0 113 15-133 293-409 (742)
176 TIGR00450 mnmE_trmE_thdF tRNA 99.7 9.5E-15 2.1E-19 105.0 14.4 110 10-135 244-361 (442)
177 PRK11058 GTPase HflX; Provisio 99.7 1.4E-14 3E-19 103.7 15.2 123 3-134 230-362 (426)
178 cd01883 EF1_alpha Eukaryotic e 99.6 1.8E-15 3.9E-20 99.9 9.8 114 7-123 67-194 (219)
179 TIGR00483 EF-1_alpha translati 99.6 1.3E-15 2.7E-20 109.5 9.3 117 6-124 74-197 (426)
180 TIGR01394 TypA_BipA GTP-bindin 99.6 8.4E-15 1.8E-19 108.4 13.7 121 8-133 55-190 (594)
181 cd00880 Era_like Era (E. coli 99.6 6.3E-15 1.4E-19 91.7 11.1 113 16-133 44-163 (163)
182 PRK12317 elongation factor 1-a 99.6 4E-15 8.7E-20 106.8 11.2 120 4-125 71-196 (425)
183 cd01895 EngA2 EngA2 subfamily. 99.6 4.3E-14 9.4E-19 89.4 14.4 117 11-132 44-173 (174)
184 COG1100 GTPase SAR1 and relate 99.6 7.3E-15 1.6E-19 96.7 11.1 132 2-134 35-185 (219)
185 PRK00093 GTP-binding protein D 99.6 1.9E-14 4.2E-19 103.6 13.6 114 7-132 39-160 (435)
186 TIGR00437 feoB ferrous iron tr 99.6 9.6E-15 2.1E-19 108.3 11.9 110 9-133 33-154 (591)
187 PRK15467 ethanolamine utilizat 99.6 8.2E-15 1.8E-19 92.2 9.8 103 21-134 41-147 (158)
188 TIGR03680 eif2g_arch translati 99.6 1.1E-14 2.5E-19 103.9 11.2 113 16-133 79-195 (406)
189 PRK09518 bifunctional cytidyla 99.6 3.8E-14 8.2E-19 107.4 14.1 120 11-135 492-622 (712)
190 TIGR03594 GTPase_EngA ribosome 99.6 2.8E-14 6.1E-19 102.6 12.8 115 8-134 38-160 (429)
191 PRK00093 GTP-binding protein D 99.6 3.6E-14 7.8E-19 102.2 13.1 118 12-134 216-344 (435)
192 KOG0462 Elongation factor-type 99.6 2.6E-14 5.6E-19 102.5 12.0 110 14-133 122-234 (650)
193 PRK10218 GTP-binding protein; 99.6 5.1E-14 1.1E-18 104.4 13.2 118 11-133 62-194 (607)
194 TIGR00491 aIF-2 translation in 99.6 2.3E-14 5.1E-19 105.8 11.3 110 18-132 70-214 (590)
195 cd04168 TetM_like Tet(M)-like 99.6 4.2E-14 9.1E-19 94.3 11.5 122 7-133 54-234 (237)
196 PRK09518 bifunctional cytidyla 99.6 6.7E-14 1.4E-18 106.0 13.8 111 12-134 318-436 (712)
197 KOG0096 GTPase Ran/TC4/GSP1 (n 99.6 3.4E-15 7.4E-20 93.9 5.7 127 1-134 39-169 (216)
198 PRK10512 selenocysteinyl-tRNA- 99.6 1.5E-14 3.2E-19 107.6 9.4 113 15-134 49-166 (614)
199 PRK12298 obgE GTPase CgtA; Rev 99.6 1.3E-13 2.7E-18 97.8 13.3 131 3-135 192-334 (390)
200 PRK04000 translation initiatio 99.6 5.5E-14 1.2E-18 100.5 11.5 113 17-134 85-201 (411)
201 PRK00454 engB GTP-binding prot 99.6 1E-13 2.3E-18 89.7 11.1 110 16-135 69-195 (196)
202 cd01884 EF_Tu EF-Tu subfamily. 99.6 7.5E-14 1.6E-18 90.6 10.3 107 11-122 59-171 (195)
203 KOG0077 Vesicle coat complex C 99.5 2.2E-14 4.8E-19 88.5 6.8 133 1-133 48-192 (193)
204 cd04166 CysN_ATPS CysN_ATPS su 99.5 2.3E-13 4.9E-18 89.3 11.9 112 9-124 69-184 (208)
205 cd04163 Era Era subfamily. Er 99.5 4.5E-13 9.8E-18 84.0 12.6 114 12-133 46-168 (168)
206 cd04165 GTPBP1_like GTPBP1-lik 99.5 1.2E-13 2.7E-18 91.4 10.2 115 12-131 79-220 (224)
207 cd01896 DRG The developmentall 99.5 3.5E-13 7.7E-18 89.7 12.3 121 4-134 34-226 (233)
208 COG0481 LepA Membrane GTPase L 99.5 8.1E-14 1.8E-18 98.7 9.4 110 14-133 73-185 (603)
209 PRK00089 era GTPase Era; Revie 99.5 4.4E-13 9.4E-18 92.1 12.8 113 14-134 50-171 (292)
210 KOG0082 G-protein alpha subuni 99.5 9.2E-14 2E-18 96.1 9.0 135 2-136 180-346 (354)
211 PF02421 FeoB_N: Ferrous iron 99.5 2.2E-13 4.8E-18 85.0 9.7 111 4-129 34-156 (156)
212 KOG0090 Signal recognition par 99.5 1.6E-12 3.5E-17 83.5 12.8 130 3-133 68-238 (238)
213 COG0532 InfB Translation initi 99.5 4.2E-13 9.1E-18 96.2 11.2 113 15-133 53-169 (509)
214 PRK00741 prfC peptide chain re 99.5 1.3E-12 2.7E-17 95.9 13.6 78 8-90 70-147 (526)
215 KOG1673 Ras GTPases [General f 99.5 4E-13 8.6E-18 82.3 9.1 124 4-133 52-185 (205)
216 PRK04004 translation initiatio 99.5 6.9E-13 1.5E-17 98.3 11.9 108 19-131 73-215 (586)
217 TIGR03598 GTPase_YsxC ribosome 99.5 3.9E-13 8.4E-18 86.2 9.1 98 18-123 65-179 (179)
218 PLN00043 elongation factor 1-a 99.5 8.3E-13 1.8E-17 95.2 11.4 115 5-124 73-203 (447)
219 TIGR00157 ribosome small subun 99.5 2.7E-13 5.8E-18 90.9 7.9 95 28-131 24-120 (245)
220 PRK12736 elongation factor Tu; 99.5 2.6E-12 5.7E-17 91.6 12.6 118 11-133 69-200 (394)
221 KOG1145 Mitochondrial translat 99.5 1.3E-12 2.7E-17 94.1 10.6 116 11-133 196-315 (683)
222 PRK13351 elongation factor G; 99.4 4.9E-12 1.1E-16 95.8 14.0 82 3-89 59-140 (687)
223 PRK14845 translation initiatio 99.4 2E-12 4.4E-17 100.3 11.9 109 19-132 528-671 (1049)
224 TIGR00485 EF-Tu translation el 99.4 3.8E-12 8.3E-17 90.8 12.6 106 10-120 68-179 (394)
225 KOG1489 Predicted GTP-binding 99.4 9.1E-13 2E-17 89.3 8.3 117 9-132 235-365 (366)
226 PRK09554 feoB ferrous iron tra 99.4 4.6E-12 1E-16 96.4 13.0 108 11-133 44-167 (772)
227 PTZ00327 eukaryotic translatio 99.4 1.4E-12 3.1E-17 94.0 9.5 112 17-133 117-232 (460)
228 TIGR02034 CysN sulfate adenyly 99.4 5.4E-12 1.2E-16 90.2 11.8 114 7-124 70-187 (406)
229 PTZ00141 elongation factor 1- 99.4 4.2E-12 9.2E-17 91.6 11.3 114 7-124 75-203 (446)
230 PF08477 Miro: Miro-like prote 99.4 1.2E-13 2.6E-18 82.8 2.8 69 15-85 48-119 (119)
231 PRK12735 elongation factor Tu; 99.4 3.1E-12 6.7E-17 91.2 10.0 118 11-133 69-202 (396)
232 COG1159 Era GTPase [General fu 99.4 8.7E-12 1.9E-16 84.0 11.5 116 12-135 49-173 (298)
233 PRK12740 elongation factor G; 99.4 2.6E-11 5.6E-16 91.7 15.3 81 4-89 47-127 (668)
234 cd04169 RF3 RF3 subfamily. Pe 99.4 7.5E-12 1.6E-16 84.9 11.1 90 7-101 61-153 (267)
235 COG1160 Predicted GTPases [Gen 99.4 1.2E-11 2.7E-16 87.5 12.3 114 8-133 42-164 (444)
236 cd01886 EF-G Elongation factor 99.4 8.1E-12 1.8E-16 84.8 10.6 90 7-101 54-146 (270)
237 COG5256 TEF1 Translation elong 99.4 3.6E-12 7.9E-17 89.1 8.9 118 5-124 73-201 (428)
238 PRK05124 cysN sulfate adenylyl 99.4 2.7E-12 5.8E-17 93.3 8.4 114 7-125 97-216 (474)
239 PRK09866 hypothetical protein; 99.4 8.1E-12 1.8E-16 92.2 10.5 127 2-131 212-350 (741)
240 TIGR00503 prfC peptide chain r 99.4 4.3E-11 9.3E-16 88.0 14.2 74 10-88 73-146 (527)
241 CHL00071 tufA elongation facto 99.4 7.6E-12 1.7E-16 89.6 9.8 106 11-121 69-180 (409)
242 cd01885 EF2 EF2 (for archaea a 99.4 1.5E-11 3.3E-16 81.2 10.3 67 16-87 72-138 (222)
243 cd01876 YihA_EngB The YihA (En 99.4 1.1E-11 2.4E-16 77.9 9.3 111 18-133 46-170 (170)
244 COG1160 Predicted GTPases [Gen 99.4 9.5E-12 2.1E-16 88.1 9.8 119 11-134 220-351 (444)
245 TIGR00484 EF-G translation elo 99.3 9.5E-11 2.1E-15 88.9 15.3 78 7-89 65-142 (689)
246 cd04167 Snu114p Snu114p subfam 99.3 3.9E-11 8.5E-16 78.9 11.7 68 15-87 69-136 (213)
247 KOG4423 GTP-binding protein-li 99.3 4.7E-13 1E-17 84.2 2.5 115 16-134 74-194 (229)
248 PRK00049 elongation factor Tu; 99.3 1.6E-11 3.6E-16 87.5 10.4 118 11-133 69-202 (396)
249 COG2895 CysN GTPases - Sulfate 99.3 9E-12 2E-16 85.7 8.2 116 4-123 73-192 (431)
250 PLN03127 Elongation factor Tu; 99.3 2.5E-11 5.5E-16 87.6 10.7 122 7-133 114-251 (447)
251 PRK13768 GTPase; Provisional 99.3 8.8E-12 1.9E-16 84.0 7.6 117 16-134 96-247 (253)
252 COG2262 HflX GTPases [General 99.3 1.4E-10 3.1E-15 81.2 13.3 122 2-134 224-356 (411)
253 PRK05506 bifunctional sulfate 99.3 2.9E-11 6.2E-16 90.9 10.3 114 7-124 94-211 (632)
254 PLN03126 Elongation factor Tu; 99.3 5.9E-11 1.3E-15 86.3 11.5 107 10-121 137-249 (478)
255 COG1084 Predicted GTPase [Gene 99.3 6.6E-11 1.4E-15 80.8 10.8 126 2-134 200-336 (346)
256 COG0486 ThdF Predicted GTPase 99.3 1.7E-10 3.8E-15 82.0 12.8 111 10-134 258-376 (454)
257 COG0218 Predicted GTPase [Gene 99.3 2E-10 4.4E-15 73.6 11.5 125 2-136 54-199 (200)
258 cd01855 YqeH YqeH. YqeH is an 99.3 4.3E-11 9.3E-16 77.4 8.0 98 29-133 23-124 (190)
259 cd01859 MJ1464 MJ1464. This f 99.3 2.5E-11 5.4E-16 76.1 6.7 94 30-133 2-95 (156)
260 PF10662 PduV-EutP: Ethanolami 99.2 7.6E-11 1.6E-15 72.3 8.3 99 20-130 39-142 (143)
261 cd04170 EF-G_bact Elongation f 99.2 1.6E-10 3.6E-15 78.5 10.8 81 4-89 51-131 (268)
262 PF00503 G-alpha: G-protein al 99.2 5.6E-11 1.2E-15 84.7 8.7 132 2-133 220-389 (389)
263 PF04670 Gtr1_RagA: Gtr1/RagA 99.2 2.6E-10 5.6E-15 75.7 9.0 127 3-134 33-176 (232)
264 PF09439 SRPRB: Signal recogni 99.2 7.2E-11 1.6E-15 75.3 5.2 84 15-98 47-136 (181)
265 COG0370 FeoB Fe2+ transport sy 99.1 1.5E-09 3.3E-14 80.3 12.1 115 5-134 38-164 (653)
266 PRK00007 elongation factor G; 99.1 3.5E-09 7.6E-14 80.5 14.1 77 8-89 66-142 (693)
267 PRK12739 elongation factor G; 99.1 1.6E-09 3.5E-14 82.3 12.1 78 7-89 63-140 (691)
268 PRK12289 GTPase RsgA; Reviewed 99.1 3.7E-10 8.1E-15 79.2 7.9 90 33-131 82-172 (352)
269 COG3276 SelB Selenocysteine-sp 99.1 1.4E-09 3E-14 76.9 9.7 121 7-133 40-161 (447)
270 COG0536 Obg Predicted GTPase [ 99.1 1.8E-09 4E-14 74.2 9.8 126 7-135 196-334 (369)
271 COG1217 TypA Predicted membran 99.1 3.5E-09 7.7E-14 75.5 10.5 117 12-133 63-194 (603)
272 KOG1423 Ras-like GTPase ERA [C 99.0 4.8E-09 1E-13 71.3 10.5 121 10-134 113-271 (379)
273 KOG1490 GTP-binding protein CR 99.0 3.6E-10 7.8E-15 81.0 4.8 127 3-135 201-342 (620)
274 TIGR03597 GTPase_YqeH ribosome 99.0 5.2E-10 1.1E-14 79.0 5.4 98 26-132 49-151 (360)
275 KOG0085 G protein subunit Galp 99.0 1.9E-10 4E-15 75.4 2.9 135 2-136 184-351 (359)
276 cd01854 YjeQ_engC YjeQ/EngC. 99.0 1.9E-09 4.2E-14 74.0 8.0 85 38-131 76-161 (287)
277 KOG1707 Predicted Ras related/ 99.0 9.2E-10 2E-14 80.0 6.6 114 14-133 53-174 (625)
278 COG4108 PrfC Peptide chain rel 99.0 1.1E-08 2.5E-13 72.4 11.4 86 10-100 74-162 (528)
279 cd01899 Ygr210 Ygr210 subfamil 99.0 2.8E-08 6E-13 69.1 13.2 54 74-133 214-268 (318)
280 cd01856 YlqF YlqF. Proteins o 99.0 3.5E-09 7.6E-14 67.4 8.1 97 25-133 3-100 (171)
281 cd01858 NGP_1 NGP-1. Autoanti 99.0 4.5E-09 9.8E-14 66.0 8.3 90 37-133 5-94 (157)
282 KOG0099 G protein subunit Galp 99.0 2E-09 4.4E-14 71.8 6.8 132 4-135 189-370 (379)
283 COG1163 DRG Predicted GTPase [ 99.0 6.6E-09 1.4E-13 71.1 9.4 118 7-134 100-289 (365)
284 PRK12288 GTPase RsgA; Reviewed 98.9 7.3E-09 1.6E-13 72.7 8.7 85 39-132 119-206 (347)
285 COG5257 GCD11 Translation init 98.9 3.9E-09 8.5E-14 72.2 6.8 113 17-134 86-202 (415)
286 KOG1144 Translation initiation 98.9 7.6E-09 1.6E-13 77.4 8.7 113 17-134 540-687 (1064)
287 PRK00098 GTPase RsgA; Reviewed 98.9 5E-09 1.1E-13 72.3 7.1 84 38-130 78-163 (298)
288 KOG0458 Elongation factor 1 al 98.9 9.5E-09 2.1E-13 74.8 8.6 111 11-123 249-371 (603)
289 TIGR03596 GTPase_YlqF ribosome 98.9 1.1E-08 2.3E-13 70.0 8.4 98 25-134 5-103 (276)
290 cd01849 YlqF_related_GTPase Yl 98.9 1.3E-08 2.9E-13 63.7 8.0 82 42-132 1-83 (155)
291 TIGR00490 aEF-2 translation el 98.9 2.7E-08 5.8E-13 76.0 10.4 72 12-88 81-152 (720)
292 COG0480 FusA Translation elong 98.8 4.8E-08 1E-12 73.9 9.9 87 10-101 68-158 (697)
293 cd04104 p47_IIGP_like p47 (47- 98.8 2.4E-08 5.2E-13 65.0 6.8 111 17-135 52-185 (197)
294 cd01857 HSR1_MMR1 HSR1/MMR1. 98.8 3.2E-08 6.9E-13 61.1 7.0 79 35-121 6-84 (141)
295 PRK09563 rbgA GTPase YlqF; Rev 98.8 3.8E-08 8.3E-13 67.6 7.8 99 24-134 7-106 (287)
296 PF03029 ATP_bind_1: Conserved 98.7 2.4E-08 5.2E-13 66.8 5.5 115 18-133 92-236 (238)
297 COG4917 EutP Ethanolamine util 98.7 5.1E-08 1.1E-12 58.1 6.1 99 21-131 41-143 (148)
298 COG0050 TufB GTPases - transla 98.7 1.6E-07 3.4E-12 63.9 8.9 118 11-133 69-200 (394)
299 PRK09435 membrane ATPase/prote 98.7 1E-07 2.2E-12 66.5 8.4 108 14-133 146-259 (332)
300 TIGR00101 ureG urease accessor 98.7 9.9E-08 2.1E-12 62.2 7.4 102 16-134 91-196 (199)
301 PLN00116 translation elongatio 98.7 1.4E-07 3.1E-12 73.2 9.4 68 15-87 96-163 (843)
302 TIGR00750 lao LAO/AO transport 98.7 4E-07 8.6E-12 63.0 10.3 107 15-133 125-237 (300)
303 PRK13796 GTPase YqeH; Provisio 98.7 7.4E-08 1.6E-12 68.3 6.5 97 29-133 58-158 (365)
304 PTZ00416 elongation factor 2; 98.6 2.3E-07 5E-12 72.0 9.1 67 16-87 91-157 (836)
305 PRK07560 elongation factor EF- 98.6 3.3E-07 7.2E-12 70.3 9.3 69 15-88 85-153 (731)
306 PRK09602 translation-associate 98.6 1.4E-06 3E-11 62.4 10.8 51 74-132 217-269 (396)
307 KOG1532 GTPase XAB1, interacts 98.6 7.1E-07 1.5E-11 60.2 8.6 120 15-135 114-265 (366)
308 KOG1191 Mitochondrial GTPase [ 98.5 2.5E-06 5.4E-11 61.6 10.4 123 11-134 310-450 (531)
309 PRK01889 GTPase RsgA; Reviewed 98.5 2.3E-06 4.9E-11 60.6 9.3 84 38-130 110-193 (356)
310 TIGR00073 hypB hydrogenase acc 98.4 1E-06 2.2E-11 57.8 6.8 103 16-133 102-206 (207)
311 cd01882 BMS1 Bms1. Bms1 is an 98.4 1.1E-06 2.4E-11 58.4 6.9 99 14-120 80-182 (225)
312 KOG0461 Selenocysteine-specifi 98.4 9.2E-07 2E-11 61.5 6.4 114 14-133 67-192 (522)
313 PF01926 MMR_HSR1: 50S ribosom 98.4 6.9E-06 1.5E-10 48.8 9.5 71 7-83 37-116 (116)
314 COG5258 GTPBP1 GTPase [General 98.4 5.7E-06 1.2E-10 58.4 10.2 112 16-132 200-337 (527)
315 KOG0464 Elongation factor G [T 98.4 1.2E-07 2.6E-12 67.3 1.8 86 11-101 96-184 (753)
316 cd01852 AIG1 AIG1 (avrRpt2-ind 98.4 1.2E-05 2.7E-10 52.2 10.3 124 6-135 38-185 (196)
317 COG3596 Predicted GTPase [Gene 98.3 8E-06 1.7E-10 55.2 9.1 118 14-134 84-222 (296)
318 PF06858 NOG1: Nucleolar GTP-b 98.3 2.4E-06 5.3E-11 44.0 4.9 43 41-85 14-58 (58)
319 KOG0468 U5 snRNP-specific prot 98.3 2.3E-06 5E-11 63.9 6.5 68 14-86 194-261 (971)
320 cd01850 CDC_Septin CDC/Septin. 98.2 1.2E-05 2.5E-10 55.2 8.3 43 40-88 114-157 (276)
321 KOG0460 Mitochondrial translat 98.1 2.5E-05 5.4E-10 54.4 8.1 107 7-117 105-218 (449)
322 KOG1707 Predicted Ras related/ 98.1 6E-05 1.3E-09 55.7 9.3 111 11-134 468-583 (625)
323 KOG3887 Predicted small GTPase 98.0 0.00012 2.5E-09 49.0 8.5 118 15-134 73-202 (347)
324 KOG0465 Mitochondrial elongati 97.9 7.2E-05 1.6E-09 55.6 8.1 84 12-100 99-185 (721)
325 KOG0459 Polypeptide release fa 97.9 1.7E-05 3.7E-10 56.3 4.6 122 6-127 146-279 (501)
326 KOG3886 GTP-binding protein [S 97.9 3.6E-05 7.7E-10 51.0 5.6 75 15-91 51-133 (295)
327 PF00350 Dynamin_N: Dynamin fa 97.9 6.4E-05 1.4E-09 47.4 6.4 65 16-84 100-168 (168)
328 smart00053 DYNc Dynamin, GTPas 97.9 0.00019 4.2E-09 48.2 8.5 70 16-89 124-207 (240)
329 KOG0466 Translation initiation 97.8 1.6E-05 3.4E-10 54.7 3.2 110 17-133 125-240 (466)
330 PF03308 ArgK: ArgK protein; 97.8 7.3E-05 1.6E-09 50.4 6.0 107 15-133 120-229 (266)
331 COG1162 Predicted GTPases [Gen 97.8 0.00042 9.1E-09 47.7 9.2 86 38-132 77-165 (301)
332 KOG0467 Translation elongation 97.8 4.5E-05 9.7E-10 57.9 4.6 67 14-85 69-135 (887)
333 PRK10463 hydrogenase nickel in 97.7 6.8E-05 1.5E-09 51.5 4.0 57 74-133 230-288 (290)
334 cd04178 Nucleostemin_like Nucl 97.7 0.00011 2.4E-09 46.9 4.7 55 42-99 1-55 (172)
335 COG1703 ArgK Putative periplas 97.6 0.0007 1.5E-08 46.6 8.6 109 14-134 141-254 (323)
336 KOG1486 GTP-binding protein DR 97.5 0.0012 2.6E-08 44.6 7.8 47 11-57 103-156 (364)
337 COG0378 HypB Ni2+-binding GTPa 97.4 0.00017 3.7E-09 46.5 3.2 80 42-133 119-200 (202)
338 KOG0705 GTPase-activating prot 97.4 0.0006 1.3E-08 50.5 6.1 116 14-134 74-189 (749)
339 KOG1954 Endocytosis/signaling 97.4 0.00083 1.8E-08 47.7 6.6 70 18-91 148-228 (532)
340 smart00010 small_GTPase Small 97.4 0.00015 3.2E-09 43.2 2.6 78 32-123 38-115 (124)
341 KOG1143 Predicted translation 97.3 0.0032 6.9E-08 44.9 8.9 103 17-126 249-380 (591)
342 PF04548 AIG1: AIG1 family; I 97.3 0.0039 8.5E-08 41.1 9.0 122 7-136 39-188 (212)
343 PTZ00258 GTP-binding protein; 97.3 0.0058 1.3E-07 44.0 10.2 35 17-51 85-126 (390)
344 COG1161 Predicted GTPases [Gen 97.3 0.0011 2.4E-08 46.5 6.5 94 23-127 16-110 (322)
345 cd01853 Toc34_like Toc34-like 97.2 0.008 1.7E-07 40.7 9.8 76 12-89 74-164 (249)
346 TIGR00991 3a0901s02IAP34 GTP-b 97.2 0.0084 1.8E-07 41.8 9.6 73 14-88 83-167 (313)
347 KOG0410 Predicted GTP binding 97.0 0.0021 4.6E-08 44.9 5.6 104 16-134 225-341 (410)
348 KOG0469 Elongation factor 2 [T 97.0 0.0012 2.6E-08 48.6 4.4 68 14-86 95-162 (842)
349 TIGR02836 spore_IV_A stage IV 97.0 0.019 4.2E-07 41.8 10.2 82 38-131 141-234 (492)
350 KOG1424 Predicted GTP-binding 97.0 0.0029 6.2E-08 46.6 6.1 71 38-118 172-244 (562)
351 KOG2484 GTPase [General functi 97.0 0.0026 5.6E-08 45.4 5.6 71 28-101 134-204 (435)
352 KOG0463 GTP-binding protein GP 96.9 0.0047 1E-07 44.2 6.4 107 17-128 219-352 (641)
353 cd03110 Fer4_NifH_child This p 96.8 0.015 3.3E-07 37.0 8.1 67 15-88 91-157 (179)
354 KOG3905 Dynein light intermedi 96.6 0.03 6.6E-07 39.4 8.7 117 16-133 99-289 (473)
355 KOG0448 Mitofusin 1 GTPase, in 96.6 0.014 3E-07 44.5 7.1 68 18-90 207-277 (749)
356 TIGR00064 ftsY signal recognit 96.3 0.095 2.1E-06 36.1 9.5 95 15-126 153-260 (272)
357 PF05049 IIGP: Interferon-indu 96.2 0.038 8.2E-07 39.7 7.4 109 17-134 86-218 (376)
358 PRK10416 signal recognition pa 96.0 0.11 2.3E-06 36.6 8.9 95 15-126 195-302 (318)
359 PRK14974 cell division protein 95.9 0.15 3.3E-06 36.2 9.1 96 15-127 221-323 (336)
360 KOG2486 Predicted GTPase [Gene 95.8 0.012 2.6E-07 40.4 3.3 111 16-131 182-313 (320)
361 TIGR03348 VI_IcmF type VI secr 95.8 0.054 1.2E-06 44.5 7.4 70 18-88 162-257 (1169)
362 COG3640 CooC CO dehydrogenase 95.5 0.04 8.6E-07 37.0 4.7 64 16-87 133-198 (255)
363 cd03112 CobW_like The function 95.1 0.076 1.6E-06 33.4 5.1 64 16-86 86-158 (158)
364 cd02038 FleN-like FleN is a me 95.0 0.17 3.6E-06 31.0 6.3 66 17-87 45-110 (139)
365 cd01900 YchF YchF subfamily. 94.9 0.12 2.7E-06 35.5 6.0 34 18-51 63-103 (274)
366 TIGR00993 3a0901s04IAP86 chlor 94.7 0.65 1.4E-05 36.2 9.7 73 14-88 163-250 (763)
367 KOG2485 Conserved ATP/GTP bind 94.6 0.12 2.6E-06 36.1 5.2 72 23-101 28-100 (335)
368 TIGR01425 SRP54_euk signal rec 94.2 0.29 6.3E-06 35.9 6.8 67 15-88 181-253 (429)
369 cd03114 ArgK-like The function 94.2 0.21 4.6E-06 31.0 5.4 59 15-85 90-148 (148)
370 COG0523 Putative GTPases (G3E 94.1 0.55 1.2E-05 33.3 7.9 92 16-116 84-184 (323)
371 PRK09601 GTP-binding protein Y 93.8 0.65 1.4E-05 33.4 7.8 34 18-51 67-107 (364)
372 KOG2423 Nucleolar GTPase [Gene 93.8 0.98 2.1E-05 33.0 8.6 59 38-99 211-269 (572)
373 KOG0447 Dynamin-like GTP bindi 93.8 2.4 5.1E-05 32.5 12.1 97 17-116 412-523 (980)
374 COG1149 MinD superfamily P-loo 93.8 1 2.2E-05 31.1 8.2 76 17-101 164-240 (284)
375 cd03111 CpaE_like This protein 93.8 0.61 1.3E-05 27.1 6.5 62 18-83 44-106 (106)
376 TIGR00959 ffh signal recogniti 93.6 0.83 1.8E-05 33.7 8.3 80 15-101 181-267 (428)
377 COG4963 CpaE Flp pilus assembl 93.5 0.81 1.8E-05 32.9 7.7 83 16-102 217-299 (366)
378 cd03115 SRP The signal recogni 93.3 0.87 1.9E-05 28.8 7.2 68 15-89 81-154 (173)
379 PF14331 ImcF-related_N: ImcF- 93.1 0.52 1.1E-05 32.4 6.3 48 41-89 26-84 (266)
380 cd02036 MinD Bacterial cell di 92.4 1.8 3.9E-05 27.2 8.8 66 18-89 64-129 (179)
381 PRK10867 signal recognition pa 92.2 1.3 2.8E-05 32.7 7.6 80 15-101 182-268 (433)
382 KOG0780 Signal recognition par 92.0 1.1 2.3E-05 32.7 6.6 51 14-64 181-237 (483)
383 cd02032 Bchl_like This family 91.4 0.95 2.1E-05 30.8 6.0 69 16-86 115-184 (267)
384 COG1908 FrhD Coenzyme F420-red 91.3 0.53 1.1E-05 28.2 3.9 59 77-135 57-123 (132)
385 TIGR01007 eps_fam capsular exo 91.2 2.9 6.2E-05 27.2 7.9 68 15-88 126-194 (204)
386 TIGR03371 cellulose_yhjQ cellu 91.0 1.4 3.1E-05 29.4 6.5 68 17-88 115-182 (246)
387 PRK13185 chlL protochlorophyll 91.0 0.92 2E-05 30.9 5.6 70 15-86 116-186 (270)
388 PF00735 Septin: Septin; Inte 90.9 0.7 1.5E-05 32.0 4.9 46 41-92 114-160 (281)
389 cd02037 MRP-like MRP (Multiple 90.8 2.8 6E-05 26.4 7.3 65 15-86 66-133 (169)
390 COG5019 CDC3 Septin family pro 90.7 3.3 7.1E-05 29.9 8.0 46 41-92 134-180 (373)
391 PF05783 DLIC: Dynein light in 90.6 0.55 1.2E-05 35.0 4.4 118 16-134 72-264 (472)
392 PHA02518 ParA-like protein; Pr 90.3 3.3 7.2E-05 26.8 7.6 69 15-87 75-146 (211)
393 COG0541 Ffh Signal recognition 89.4 2.1 4.5E-05 31.6 6.3 66 15-87 181-252 (451)
394 cd02117 NifH_like This family 89.3 1.2 2.5E-05 29.3 4.9 72 15-87 115-188 (212)
395 PF00448 SRP54: SRP54-type pro 89.3 1.4 3E-05 28.9 5.1 68 15-89 82-155 (196)
396 KOG1534 Putative transcription 89.2 0.71 1.5E-05 30.8 3.6 80 18-100 99-190 (273)
397 KOG1487 GTP-binding protein DR 89.0 0.33 7.2E-06 33.4 2.1 51 74-134 231-281 (358)
398 PRK13849 putative crown gall t 88.7 4.1 8.9E-05 27.4 7.1 68 15-85 82-151 (231)
399 TIGR02475 CobW cobalamin biosy 88.4 1 2.2E-05 32.1 4.3 37 16-52 92-135 (341)
400 TIGR01969 minD_arch cell divis 88.3 3.8 8.3E-05 27.4 6.9 66 15-87 107-173 (251)
401 PRK11537 putative GTP-binding 88.1 2.3 5.1E-05 30.0 5.9 66 17-89 91-165 (318)
402 PRK00771 signal recognition pa 88.0 2.7 6E-05 31.1 6.3 65 17-88 176-246 (437)
403 TIGR01968 minD_bact septum sit 87.1 3.4 7.4E-05 27.8 6.1 65 16-86 111-175 (261)
404 COG3523 IcmF Type VI protein s 87.0 2 4.3E-05 35.8 5.5 70 18-88 175-270 (1188)
405 cd04170 EF-G_bact Elongation f 86.2 1.1 2.3E-05 30.7 3.3 26 108-133 240-265 (268)
406 cd02042 ParA ParA and ParB of 85.8 4.6 0.0001 23.0 5.5 45 17-64 40-84 (104)
407 TIGR01281 DPOR_bchL light-inde 85.8 2.4 5.2E-05 28.9 4.9 71 15-87 114-185 (268)
408 CHL00175 minD septum-site dete 85.6 4.8 0.0001 27.7 6.3 65 16-86 126-190 (281)
409 PRK10818 cell division inhibit 84.1 6.3 0.00014 26.8 6.3 69 16-87 113-186 (270)
410 PRK06731 flhF flagellar biosyn 83.7 8.3 0.00018 26.7 6.7 67 16-89 154-226 (270)
411 PF01656 CbiA: CobQ/CobB/MinD/ 83.5 1.8 3.8E-05 27.6 3.3 70 17-90 95-164 (195)
412 PRK12727 flagellar biosynthesi 83.5 7.9 0.00017 29.7 6.9 66 16-88 428-498 (559)
413 PF08438 MMR_HSR1_C: GTPase of 83.1 0.61 1.3E-05 27.5 0.9 31 80-117 1-32 (109)
414 COG0552 FtsY Signal recognitio 81.8 7.9 0.00017 27.7 6.0 81 15-102 220-313 (340)
415 PF02492 cobW: CobW/HypB/UreG, 81.8 3.2 6.9E-05 26.5 3.9 69 16-90 84-157 (178)
416 TIGR00092 GTP-binding protein 81.4 9.8 0.00021 27.6 6.5 36 17-52 67-109 (368)
417 CHL00072 chlL photochlorophyll 81.1 7.1 0.00015 27.2 5.7 69 16-86 115-184 (290)
418 KOG0052 Translation elongation 80.5 1.6 3.4E-05 31.7 2.3 76 12-89 77-157 (391)
419 PRK14722 flhF flagellar biosyn 80.4 11 0.00023 27.5 6.5 75 15-89 214-296 (374)
420 cd01886 EF-G Elongation factor 79.5 2.7 5.9E-05 29.0 3.2 27 107-133 241-267 (270)
421 PF10087 DUF2325: Uncharacteri 79.3 8.6 0.00019 21.9 4.8 46 28-80 36-81 (97)
422 KOG2655 Septin family protein 79.1 11 0.00024 27.3 6.2 48 40-92 129-176 (366)
423 COG0012 Predicted GTPase, prob 78.8 5.5 0.00012 28.8 4.6 36 17-52 67-109 (372)
424 TIGR03815 CpaE_hom_Actino heli 78.0 21 0.00046 25.1 7.9 79 15-101 203-281 (322)
425 PRK11889 flhF flagellar biosyn 77.3 15 0.00032 27.3 6.4 79 16-101 320-405 (436)
426 COG0012 Predicted GTPase, prob 76.1 2.3 5.1E-05 30.7 2.2 40 73-117 205-247 (372)
427 KOG1249 Predicted GTPases [Gen 75.2 7 0.00015 29.8 4.4 89 38-133 108-210 (572)
428 cd02035 ArsA ArsA ATPase funct 74.6 22 0.00047 23.5 6.4 68 16-87 113-183 (217)
429 KOG2743 Cobalamin synthesis pr 74.5 21 0.00046 25.5 6.3 74 15-94 144-231 (391)
430 PRK12726 flagellar biosynthesi 73.5 24 0.00052 26.0 6.7 80 15-101 284-370 (407)
431 PRK11670 antiporter inner memb 73.1 30 0.00065 25.2 7.2 68 15-87 214-282 (369)
432 PRK13235 nifH nitrogenase redu 73.0 14 0.0003 25.3 5.3 70 15-85 116-187 (274)
433 PRK13505 formate--tetrahydrofo 72.7 29 0.00063 26.8 7.1 57 73-134 371-429 (557)
434 cd02040 NifH NifH gene encodes 72.3 11 0.00025 25.5 4.8 69 15-84 115-185 (270)
435 KOG3022 Predicted ATPase, nucl 71.8 8.5 0.00019 26.9 3.9 63 11-78 151-214 (300)
436 PRK05703 flhF flagellar biosyn 71.5 38 0.00083 25.2 7.5 67 16-89 299-372 (424)
437 TIGR01005 eps_transp_fam exopo 71.4 25 0.00053 28.1 6.9 69 15-88 654-722 (754)
438 KOG0781 Signal recognition par 71.4 22 0.00048 27.0 6.1 73 15-88 465-544 (587)
439 PF07015 VirC1: VirC1 protein; 71.1 20 0.00044 24.3 5.5 69 16-87 83-153 (231)
440 cd04169 RF3 RF3 subfamily. Pe 69.9 6.3 0.00014 27.1 3.1 27 107-133 238-264 (267)
441 PRK12723 flagellar biosynthesi 69.4 33 0.00072 25.2 6.7 68 15-89 253-327 (388)
442 PRK12724 flagellar biosynthesi 67.9 40 0.00087 25.2 6.9 68 15-89 298-374 (432)
443 TIGR03029 EpsG chain length de 67.1 38 0.00081 23.2 7.3 50 16-67 212-261 (274)
444 KOG4273 Uncharacterized conser 63.8 10 0.00022 26.2 3.0 46 41-89 79-124 (418)
445 PRK13233 nifH nitrogenase redu 62.8 16 0.00034 25.0 3.9 69 15-85 117-188 (275)
446 PF05783 DLIC: Dynein light in 62.5 26 0.00055 26.5 5.1 15 75-89 99-113 (472)
447 PRK14723 flhF flagellar biosyn 60.0 35 0.00076 27.5 5.7 70 16-89 263-338 (767)
448 PF11111 CENP-M: Centromere pr 58.8 47 0.001 21.5 7.3 86 40-134 64-153 (176)
449 PRK13236 nitrogenase reductase 58.1 35 0.00077 23.8 5.1 85 15-100 120-207 (296)
450 COG1419 FlhF Flagellar GTP-bin 57.6 70 0.0015 23.8 6.5 67 15-88 280-352 (407)
451 KOG1533 Predicted GTPase [Gene 57.1 9.8 0.00021 26.1 2.0 73 16-89 96-178 (290)
452 TIGR01287 nifH nitrogenase iro 57.1 19 0.00042 24.6 3.6 68 16-84 115-184 (275)
453 COG5192 BMS1 GTP-binding prote 56.9 97 0.0021 24.5 7.9 98 12-117 108-209 (1077)
454 KOG1547 Septin CDC10 and relat 56.1 47 0.001 23.1 5.1 46 41-91 156-201 (336)
455 PRK11519 tyrosine kinase; Prov 56.0 36 0.00079 27.1 5.3 67 15-87 634-701 (719)
456 PRK13705 plasmid-partitioning 54.5 45 0.00098 24.4 5.2 71 15-88 233-308 (388)
457 KOG4530 Predicted flavoprotein 53.9 57 0.0012 20.9 6.5 76 7-84 44-128 (199)
458 PRK13232 nifH nitrogenase redu 53.4 31 0.00068 23.6 4.2 70 15-86 115-186 (273)
459 KOG1487 GTP-binding protein DR 53.2 22 0.00047 24.9 3.2 48 12-59 101-155 (358)
460 TIGR03884 sel_bind_Methan sele 53.0 37 0.00081 18.6 3.6 29 108-136 13-41 (74)
461 PRK14721 flhF flagellar biosyn 51.1 1E+02 0.0022 23.0 6.6 68 15-89 268-341 (420)
462 cd01983 Fer4_NifH The Fer4_Nif 50.6 40 0.00086 18.2 6.5 36 18-53 35-71 (99)
463 PHA02519 plasmid partition pro 50.1 55 0.0012 24.0 5.1 70 15-87 233-307 (387)
464 TIGR03018 pepcterm_TyrKin exop 50.1 70 0.0015 20.9 6.4 47 18-66 150-196 (207)
465 cd01851 GBP Guanylate-binding 49.3 77 0.0017 21.1 5.6 39 15-53 58-104 (224)
466 PRK10037 cell division protein 49.2 32 0.00069 23.2 3.6 35 15-51 116-150 (250)
467 PRK13869 plasmid-partitioning 49.1 93 0.002 23.0 6.2 71 15-88 250-328 (405)
468 COG1010 CobJ Precorrin-3B meth 48.1 88 0.0019 21.5 6.0 48 36-84 150-197 (249)
469 PRK06995 flhF flagellar biosyn 46.8 1.1E+02 0.0024 23.4 6.3 79 16-101 334-419 (484)
470 PF14606 Lipase_GDSL_3: GDSL-l 46.4 54 0.0012 21.3 4.1 65 17-81 34-100 (178)
471 PRK13660 hypothetical protein; 46.2 82 0.0018 20.5 6.1 48 30-80 119-166 (182)
472 PRK13230 nitrogenase reductase 45.5 32 0.0007 23.6 3.3 50 16-66 116-166 (279)
473 PRK13695 putative NTPase; Prov 45.4 76 0.0016 19.9 6.0 77 38-134 94-173 (174)
474 PF02662 FlpD: Methyl-viologen 45.1 68 0.0015 19.3 8.3 39 97-135 84-122 (124)
475 KOG1491 Predicted GTP-binding 44.1 16 0.00035 26.4 1.6 36 17-52 84-126 (391)
476 PF07680 DoxA: TQO small subun 42.2 43 0.00093 20.7 3.0 31 2-32 16-46 (133)
477 PF00532 Peripla_BP_1: Peripla 41.7 1.1E+02 0.0025 20.9 7.1 62 15-87 30-92 (279)
478 TIGR03566 FMN_reduc_MsuE FMN r 41.1 93 0.002 19.7 4.7 50 33-83 61-110 (174)
479 PRK13231 nitrogenase reductase 39.7 1E+02 0.0022 20.9 4.9 52 15-67 112-164 (264)
480 PRK12739 elongation factor G; 37.9 38 0.00082 26.9 2.9 26 108-133 252-277 (691)
481 cd07393 MPP_DR1119 Deinococcus 37.0 1.2E+02 0.0026 20.2 4.9 44 38-84 39-82 (232)
482 PF15162 DUF4580: Domain of un 36.3 1.2E+02 0.0025 19.4 5.8 50 2-51 34-84 (162)
483 PF07764 Omega_Repress: Omega 34.3 38 0.00082 17.7 1.7 19 115-133 44-62 (71)
484 PF09885 DUF2112: Uncharacteri 34.3 84 0.0018 19.4 3.3 37 15-51 54-91 (143)
485 PF10381 Autophagy_Cterm: Auto 33.9 9.5 0.00021 16.1 -0.5 9 1-9 15-23 (25)
486 TIGR02016 BchX chlorophyllide 33.8 1.7E+02 0.0036 20.6 6.5 83 15-101 121-207 (296)
487 COG4502 5'(3')-deoxyribonucleo 33.8 1.3E+02 0.0027 19.1 5.3 44 39-84 82-125 (180)
488 PF11524 SeleniumBinding: Sele 33.8 77 0.0017 17.5 2.8 26 110-136 21-47 (81)
489 TIGR03453 partition_RepA plasm 31.4 1.1E+02 0.0023 22.4 4.2 36 15-52 233-268 (387)
490 PF05014 Nuc_deoxyrib_tr: Nucl 31.2 1.1E+02 0.0024 17.7 5.1 45 36-86 57-101 (113)
491 cd02033 BchX Chlorophyllide re 31.1 1.8E+02 0.0039 20.9 5.2 80 16-101 147-232 (329)
492 COG0420 SbcD DNA repair exonuc 30.4 1.2E+02 0.0026 22.1 4.3 47 39-86 39-88 (390)
493 COG0431 Predicted flavoprotein 30.2 1.4E+02 0.0031 19.2 4.2 56 32-88 59-114 (184)
494 PRK13556 azoreductase; Provisi 29.1 1.7E+02 0.0037 19.1 5.9 48 36-83 85-144 (208)
495 COG4474 Uncharacterized protei 28.7 1.7E+02 0.0037 19.0 4.6 23 37-59 126-148 (180)
496 PF14784 ECIST_Cterm: C-termin 28.3 1.5E+02 0.0032 18.1 4.5 40 40-79 83-123 (126)
497 PRK09841 cryptic autophosphory 28.0 3.2E+02 0.007 22.0 7.6 66 16-87 640-706 (726)
498 TIGR01295 PedC_BrcD bacterioci 26.7 1.5E+02 0.0032 17.7 5.6 28 25-52 36-63 (122)
499 PF13614 AAA_31: AAA domain; P 26.1 1.2E+02 0.0026 18.4 3.3 33 17-50 118-150 (157)
500 KOG4378 Nuclear protein COP1 [ 25.8 1.1E+02 0.0023 23.7 3.3 17 15-31 185-201 (673)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1e-30 Score=164.02 Aligned_cols=128 Identities=25% Similarity=0.494 Sum_probs=108.4
Q ss_pred CCCcccceee--E--EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMR--K--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~--~--~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
|+.|||..++ + ++++.+++++|||+||++|++...+|+++|+|+|+|||+++.+||+.+..|+.++.+... .+.|
T Consensus 38 ~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~-~~v~ 116 (205)
T KOG0084|consen 38 YISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYAS-ENVP 116 (205)
T ss_pred hcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhcc-CCCC
Confidence 5789995554 3 557789999999999999999999999999999999999999999999999999988754 6689
Q ss_pred EEEEeeCCCCCCCCCH-----HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 77 LLVLGNKIDKPEALSK-----EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
.++|+||+|+.+...+ .++...++.+ .++++||+++.||++.|..|+..++++
T Consensus 117 ~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~-------~f~ETSAK~~~NVe~~F~~la~~lk~~ 174 (205)
T KOG0084|consen 117 KLLVGNKCDLTEKRVVSTEEAQEFADELGIP-------IFLETSAKDSTNVEDAFLTLAKELKQR 174 (205)
T ss_pred eEEEeeccccHhheecCHHHHHHHHHhcCCc-------ceeecccCCccCHHHHHHHHHHHHHHh
Confidence 9999999999877554 2334444432 299999999999999999999988753
No 2
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=1.4e-29 Score=162.48 Aligned_cols=136 Identities=32% Similarity=0.656 Sum_probs=117.8
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
+.||+|+++..++.+++.+++||+||+++++.+|..+++++|++|+|+|+++.+++.....++..+.......++|++++
T Consensus 45 ~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv 124 (181)
T PLN00223 45 TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF 124 (181)
T ss_pred ccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEE
Confidence 35999999888888999999999999999999999999999999999999999999888888777765544467999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
+||+|+.......++...++......+.+.++++||++|+|++++|+||++.+.++
T Consensus 125 ~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~~~ 180 (181)
T PLN00223 125 ANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180 (181)
T ss_pred EECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHHHHHhhc
Confidence 99999987777777788777654445566788999999999999999999988754
No 3
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=7.4e-30 Score=158.95 Aligned_cols=137 Identities=32% Similarity=0.691 Sum_probs=129.6
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
++||+|+|+..+.++++++++||.+|++++++.|++|++..+++|||+|++|.+.+.+....+..++........|++++
T Consensus 45 tvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~ 124 (181)
T KOG0070|consen 45 TVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVF 124 (181)
T ss_pred CCCccccceeEEEEcceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEE
Confidence 47999999999999999999999999999999999999999999999999999999999999999998877788999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhcC
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSKS 137 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~ 137 (137)
+||.|+++..+..++.+.++......+.|++..|+|.+|+|+.+.++|+.+.+.+++
T Consensus 125 aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl~wl~~~~~~~~ 181 (181)
T KOG0070|consen 125 ANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEGLDWLSNNLKKRR 181 (181)
T ss_pred echhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccHHHHHHHHHHHHhccC
Confidence 999999999999999999998888889999999999999999999999999988653
No 4
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.97 E-value=8.2e-29 Score=148.85 Aligned_cols=135 Identities=82% Similarity=1.314 Sum_probs=128.5
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
++||+|+|.+++..+.+.+.+||.|||.+++++|+.|+++++++++|+|+.+++..+..+..+..++......++|+++.
T Consensus 49 miptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVL 128 (186)
T KOG0075|consen 49 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVL 128 (186)
T ss_pred hcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEe
Confidence 68999999999999999999999999999999999999999999999999999999999999999998888889999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+||.|+.+......+...++....+.+.+.++.+|++...|++...+|+.+.-..
T Consensus 129 GnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~hsk~ 183 (186)
T KOG0075|consen 129 GNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEHSKS 183 (186)
T ss_pred cccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHHHHHHHHhhh
Confidence 9999999998889999999999999999999999999999999999999987654
No 5
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.97 E-value=1.3e-28 Score=157.32 Aligned_cols=134 Identities=34% Similarity=0.673 Sum_probs=115.6
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
+.||+|.++..+..+++.+.+|||||+++++..+..+++.++++++|+|++++.+++....++..+.+.....++|++++
T Consensus 41 ~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv 120 (175)
T smart00177 41 TIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVF 120 (175)
T ss_pred cCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEE
Confidence 46999988888888899999999999999999999999999999999999999899988888888766543467999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+||+|+.+.....++...++......+.+.++++||++|+|++++|+||.+.+.
T Consensus 121 ~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~ 174 (175)
T smart00177 121 ANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNLK 174 (175)
T ss_pred EeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHHHhc
Confidence 999999776666777777776555556777889999999999999999988754
No 6
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.97 E-value=1.2e-28 Score=155.33 Aligned_cols=131 Identities=31% Similarity=0.665 Sum_probs=110.7
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
+.||+|+++..+..+++++.+|||||++++...+..+++++|++++|+|+++..+++....++..+.......++|++++
T Consensus 28 ~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv 107 (159)
T cd04150 28 TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVF 107 (159)
T ss_pred cCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEE
Confidence 46899998888888899999999999999999999999999999999999999889988888877765434457899999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHH
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
+||+|+.+.....++...+.......+.+.++++||++|+|++++|+||.+
T Consensus 108 ~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 108 ANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred EECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 999999765555566666654444456777899999999999999999964
No 7
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=8.4e-29 Score=147.77 Aligned_cols=135 Identities=32% Similarity=0.654 Sum_probs=127.6
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
++||+|+|++.+.++++.|++||.+|+.+.+++|++|+.+..++|||+|+.+.+.+++.+..++.+++.....+.|+++.
T Consensus 45 ~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~Lvl 124 (180)
T KOG0071|consen 45 TIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILIL 124 (180)
T ss_pred cccccceeEEEEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999998877788999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+||.|++....++++.+.+.......+.|.+.++||.+|+|+.+.|.|++..++.
T Consensus 125 ANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eglswlsnn~~~ 179 (180)
T KOG0071|consen 125 ANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEGLSWLSNNLKE 179 (180)
T ss_pred ecCcccccccCHHHHHHHhccccccCCccEeeccccccchhHHHHHHHHHhhccC
Confidence 9999999999999999999988878889999999999999999999999987653
No 8
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.96 E-value=2.9e-28 Score=154.78 Aligned_cols=131 Identities=34% Similarity=0.674 Sum_probs=111.1
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
+.||+|.++..+..+++.+++|||||+++++.+++.+++.+|++++|+|++++.+++....++..+.......++|++++
T Consensus 37 ~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv 116 (168)
T cd04149 37 TIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVF 116 (168)
T ss_pred ccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEE
Confidence 35899988888888899999999999999999999999999999999999999899988888877766533467899999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHH
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
+||+|+.+.....++.+.++......+.++++++||++|+|++++|+||++
T Consensus 117 ~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 117 ANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred EECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence 999999765566667776655444445677999999999999999999975
No 9
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=8.1e-29 Score=155.31 Aligned_cols=131 Identities=21% Similarity=0.316 Sum_probs=107.2
Q ss_pred CCCcccceeeE----EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~~----~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
|.||||+.+.. +.+..+.+++|||+|||+|+++.+.|++.+.++|.|||+++..||+...+|++.........+.-
T Consensus 51 YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~vi 130 (221)
T KOG0094|consen 51 YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVI 130 (221)
T ss_pred ccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceE
Confidence 67999977654 44567999999999999999999999999999999999999999999999999998876555688
Q ss_pred EEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 77 LLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+++|+||.||.+.+......-..+. ..-+..|+++||+.|+||+++|..|...+-
T Consensus 131 I~LVGnKtDL~dkrqvs~eEg~~kA---kel~a~f~etsak~g~NVk~lFrrIaa~l~ 185 (221)
T KOG0094|consen 131 IFLVGNKTDLSDKRQVSIEEGERKA---KELNAEFIETSAKAGENVKQLFRRIAAALP 185 (221)
T ss_pred EEEEcccccccchhhhhHHHHHHHH---HHhCcEEEEecccCCCCHHHHHHHHHHhcc
Confidence 8999999999887654322111111 111335999999999999999999887764
No 10
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.96 E-value=5.9e-28 Score=155.14 Aligned_cols=135 Identities=33% Similarity=0.642 Sum_probs=115.0
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
+.||+|.++..++.+++.+.+|||||+++++..+..+++.+|++|+|+|+++..+++....++..+.......++|++++
T Consensus 45 ~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv 124 (182)
T PTZ00133 45 TIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVF 124 (182)
T ss_pred cCCccccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEE
Confidence 36899988888888999999999999999999999999999999999999998889888877777765433457899999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+||.|+.+.....++...++......+.+.++++||++|+|++++|++|.+.+.+
T Consensus 125 ~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~~ 179 (182)
T PTZ00133 125 ANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANIKK 179 (182)
T ss_pred EeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHHHHHH
Confidence 9999997666666777777765455556778899999999999999999987754
No 11
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.4e-28 Score=156.21 Aligned_cols=126 Identities=24% Similarity=0.432 Sum_probs=109.0
Q ss_pred CCCcccceee--E--EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMR--K--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~--~--~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
++.|+|+.++ . +++..+.+++|||+||++++.+...|+++|.++++|||+++..|++.+..|+..+.+... .+.|
T Consensus 41 ~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~-~~v~ 119 (207)
T KOG0078|consen 41 FISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHAS-DDVV 119 (207)
T ss_pred ccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCC-CCCc
Confidence 4678885554 3 456679999999999999999999999999999999999999999999999999987654 5899
Q ss_pred EEEEeeCCCCCCCCCH-----HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALSK-----EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
.++|+||+|+...+.+ +.++..++. .|+|+||++|.||+++|-.|++.+.+
T Consensus 120 ~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~--------~F~EtSAk~~~NI~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 120 KILVGNKCDLEEKRQVSKERGEALAREYGI--------KFFETSAKTNFNIEEAFLSLARDILQ 175 (207)
T ss_pred EEEeeccccccccccccHHHHHHHHHHhCC--------eEEEccccCCCCHHHHHHHHHHHHHh
Confidence 9999999999886543 456666655 59999999999999999999999874
No 12
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.96 E-value=8.6e-28 Score=153.50 Aligned_cols=133 Identities=36% Similarity=0.789 Sum_probs=121.3
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
+.||+|++...+..++..+.+||.+|+..+++.|+.+++.++++|||+|+++.+.+.+....+..++......++|++++
T Consensus 42 ~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl 121 (175)
T PF00025_consen 42 TIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILIL 121 (175)
T ss_dssp EEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEE
T ss_pred cCcccccccceeeeCcEEEEEEeccccccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEE
Confidence 36999999999999999999999999999999999999999999999999999889999999999888766678999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCCC-CCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSIT-DREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
+||+|+.+.....++...+...... .+.+.++.|||.+|+|+.+.++||.+.+
T Consensus 122 ~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 122 ANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp EESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred eccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHHHhcC
Confidence 9999999888888888888766554 6788899999999999999999999864
No 13
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2e-28 Score=153.21 Aligned_cols=125 Identities=22% Similarity=0.395 Sum_probs=104.4
Q ss_pred CCcccceeeE--E--EeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMRK--V--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~~--~--~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||||-.+.+ + +...++|.+|||+|+++|.++.+.|+++|++.|+|||+++.+||.....|+.++..... +++-+
T Consensus 35 e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~-~~~vi 113 (200)
T KOG0092|consen 35 EPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQAS-PNIVI 113 (200)
T ss_pred ccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCC-CCeEE
Confidence 4899955543 3 34459999999999999999999999999999999999999999999999999987755 77888
Q ss_pred EEEeeCCCCCCCCCH-----HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALSK-----EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
.++|||+|+.+.+.+ ....+.- +..|+++||++|.|++++|..|.+.+-.
T Consensus 114 alvGNK~DL~~~R~V~~~ea~~yAe~~--------gll~~ETSAKTg~Nv~~if~~Ia~~lp~ 168 (200)
T KOG0092|consen 114 ALVGNKADLLERREVEFEEAQAYAESQ--------GLLFFETSAKTGENVNEIFQAIAEKLPC 168 (200)
T ss_pred EEecchhhhhhcccccHHHHHHHHHhc--------CCEEEEEecccccCHHHHHHHHHHhccC
Confidence 889999999885443 2233332 3459999999999999999999988753
No 14
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.96 E-value=5.9e-27 Score=148.86 Aligned_cols=135 Identities=31% Similarity=0.586 Sum_probs=112.2
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
+.||+|.++..++.+++.+.+|||||++.++..+..+++.+|++++|+|++++.+++....|+..+.......++|++++
T Consensus 27 ~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv 106 (169)
T cd04158 27 PIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIF 106 (169)
T ss_pred cCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEE
Confidence 46899988888888999999999999999999999999999999999999999999999999888876544466899999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCC-CCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSI-TDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+||+|+.......++...+..... ..+.+.++++||++|.|++++|+||++.+.+
T Consensus 107 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~ 162 (169)
T cd04158 107 ANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVA 162 (169)
T ss_pred EeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhh
Confidence 999999765555555555443222 1234578899999999999999999987654
No 15
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.95 E-value=1.2e-26 Score=146.07 Aligned_cols=131 Identities=32% Similarity=0.697 Sum_probs=107.9
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCC--CCCCcEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPS--LNGIPLL 78 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~p~i 78 (137)
+.||+|+....+..+++.+++|||||++++..++..+++.+|++++|+|+++..++.....|+..+.+... ..++|++
T Consensus 29 ~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 108 (162)
T cd04157 29 IVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPIL 108 (162)
T ss_pred ecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEE
Confidence 46899988877888899999999999999999999999999999999999998888887778877765422 2579999
Q ss_pred EEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHH
Q 032598 79 VLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 79 vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
+++||+|+.+.....++...++........+.++++||++|+|++++|++|.+
T Consensus 109 iv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 109 FFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred EEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHhc
Confidence 99999999765555555555554332334567899999999999999999975
No 16
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.95 E-value=1.3e-26 Score=147.02 Aligned_cols=131 Identities=32% Similarity=0.573 Sum_probs=113.4
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
+.||+|++...+..++..+++||+||++.++.++..+++.++++++|+|+++..+++....|+..+.+.....++|++++
T Consensus 27 ~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv 106 (167)
T cd04161 27 VAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVL 106 (167)
T ss_pred ccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEE
Confidence 46999988888888999999999999999999999999999999999999999899999999998877655568999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCCC---CCceeEEEeecccC------CChHHHHHHHHH
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSIT---DREVCCYMISCKNS------TNIDTVIDWLVK 131 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~------~~v~~~~~~i~~ 131 (137)
+||+|+....+..++.+.+...... ...+.+++|||++| .|+++.|+||++
T Consensus 107 ~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 107 ANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred EeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence 9999998887777777777654332 23577888999998 899999999975
No 17
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.95 E-value=1.4e-26 Score=147.66 Aligned_cols=131 Identities=34% Similarity=0.618 Sum_probs=110.9
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
+.||+|+....+..++..+.+|||||++.++..+..+++.+|++++|+|+++..++.....|+..+.......++|++++
T Consensus 42 ~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv 121 (173)
T cd04154 42 ISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLIL 121 (173)
T ss_pred cCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEE
Confidence 46899988888888899999999999999999999999999999999999999888888888888766444468999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHH
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
+||+|+.+.....++...++........++++++||++|+|++++|++++.
T Consensus 122 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 122 ANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred EECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence 999999776666666666654333445778999999999999999999864
No 18
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.95 E-value=2.2e-26 Score=144.66 Aligned_cols=130 Identities=42% Similarity=0.764 Sum_probs=106.4
Q ss_pred CCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
.||+++++..+++++..+++|||||++.++.++..+++.++++++|+|++++.++.....++..+.+.....++|+++++
T Consensus 28 ~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~ 107 (158)
T cd04151 28 IPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFA 107 (158)
T ss_pred CCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEE
Confidence 58999888888888999999999999999999999999999999999999877776666666655554334579999999
Q ss_pred eCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHH
Q 032598 82 NKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 82 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
||+|+.+.....++...++.......+++++++||++|.|++++|++|++
T Consensus 108 nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 108 NKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred eCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 99999765555556565554333334567999999999999999999976
No 19
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.95 E-value=7.5e-27 Score=151.97 Aligned_cols=131 Identities=21% Similarity=0.302 Sum_probs=101.4
Q ss_pred CCCccccee--eEEEeC--CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNM--RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~--~~~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
+.||+|..+ ..+..+ .+++++|||+|+++++.++..+++++|++++|||+++.++++.+..|+..+.+. ...++|
T Consensus 29 ~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~-~~~~~p 107 (202)
T cd04120 29 CKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKY-ASEDAE 107 (202)
T ss_pred CCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCc
Confidence 357887444 345544 489999999999999999999999999999999999999999999998876544 236799
Q ss_pred EEEEeeCCCCCCCCCHH-HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALSKE-DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++|+||+|+...+... .....+... ..++.+++|||++|+|++++|+++++.+.+
T Consensus 108 iilVgNK~DL~~~~~v~~~~~~~~a~~---~~~~~~~etSAktg~gV~e~F~~l~~~~~~ 164 (202)
T cd04120 108 LLLVGNKLDCETDREISRQQGEKFAQQ---ITGMRFCEASAKDNFNVDEIFLKLVDDILK 164 (202)
T ss_pred EEEEEECcccccccccCHHHHHHHHHh---cCCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 99999999996543321 112222110 113569999999999999999999987753
No 20
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.95 E-value=1.5e-26 Score=141.32 Aligned_cols=136 Identities=32% Similarity=0.608 Sum_probs=122.7
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
+.||.|++..++..+++++++||.+||...++.|+.|+.++||+|+|+|++++..+++....+..++...+..+.|++++
T Consensus 44 i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvl 123 (185)
T KOG0073|consen 44 ISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVL 123 (185)
T ss_pred cCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEE
Confidence 47999999999999999999999999999999999999999999999999999999999999999988777788999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCC-CCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSI-TDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
+||.|+........+...+..... ....|..+.|||.+|+++.+.+.|++..+.++
T Consensus 124 ank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l~~r 180 (185)
T KOG0073|consen 124 ANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDLMSR 180 (185)
T ss_pred EecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHHHHHHHHHH
Confidence 999999988777777766665444 45678899999999999999999999887653
No 21
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.95 E-value=5e-26 Score=145.24 Aligned_cols=131 Identities=31% Similarity=0.584 Sum_probs=110.8
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
+.||+|.++..+..+++++.+|||||++++...+..+++.+|++++|+|+++.+++.....++..+.+.....++|++++
T Consensus 43 ~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv 122 (174)
T cd04153 43 TSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVL 122 (174)
T ss_pred cCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEE
Confidence 36889988888888899999999999999999999999999999999999998888887777777766544467999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHH
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
+||+|+.+.....++...++.......++.++++||++|+|++++|++|+.
T Consensus 123 ~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 123 ANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred EECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHHhc
Confidence 999999765556666677765444455678999999999999999999974
No 22
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.95 E-value=3.2e-26 Score=144.86 Aligned_cols=129 Identities=32% Similarity=0.628 Sum_probs=109.6
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
+.||+|++...++.+++++.+|||||+++++.++..+++++|++++|+|+++..++.....|+..+.... .++|++++
T Consensus 28 ~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~--~~~piilv 105 (164)
T cd04162 28 VVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHP--PDLPLVVL 105 (164)
T ss_pred ccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCC--CCCcEEEE
Confidence 4699998888888899999999999999999999999999999999999999888888888888776542 68999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCC-CCCceeEEEeeccc------CCChHHHHHHHHH
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSI-TDREVCCYMISCKN------STNIDTVIDWLVK 131 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~------~~~v~~~~~~i~~ 131 (137)
+||+|+.......++...++.... ...++.++++||++ ++||+++|+.+..
T Consensus 106 ~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 106 ANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred EeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHHHhc
Confidence 999999877777766666654433 34578889998888 9999999998864
No 23
>PTZ00099 rab6; Provisional
Probab=99.95 E-value=1.6e-26 Score=147.63 Aligned_cols=129 Identities=23% Similarity=0.383 Sum_probs=102.4
Q ss_pred CCCcccceeeE----EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~~----~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
|.||+|..+.. ++.+.+++.+|||+|++++..++..++++||++++|+|+++..+++.+..|+..+.... ..++|
T Consensus 9 ~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~-~~~~p 87 (176)
T PTZ00099 9 YQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER-GKDVI 87 (176)
T ss_pred CCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCe
Confidence 57999966642 33456899999999999999999999999999999999999999999999999887653 25789
Q ss_pred EEEEeeCCCCCCCCC--HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++|+||+|+..... ..+...... ..++.++++||++|+|++++|++|++.+-+
T Consensus 88 iilVgNK~DL~~~~~v~~~e~~~~~~-----~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 88 IALVGNKTDLGDLRKVTYEEGMQKAQ-----EYNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred EEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 999999999965332 222222111 123458999999999999999999988754
No 24
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.94 E-value=2.5e-26 Score=148.67 Aligned_cols=133 Identities=20% Similarity=0.250 Sum_probs=100.5
Q ss_pred CCCcccceee---EEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~---~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p 76 (137)
+.||+|.++. .++.+.+.+++|||+|+++++.+++.+++++|++++|||++++.+++.+. .|...+... ..++|
T Consensus 32 ~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~--~~~~p 109 (191)
T cd01875 32 YIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHH--CPNVP 109 (191)
T ss_pred CCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCC
Confidence 4689986654 24455689999999999999999999999999999999999999999986 577766543 25799
Q ss_pred EEEEeeCCCCCCCCCHHHHHHHhCCCCC---------CCC-ceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALSKEDLMEQMGLKSI---------TDR-EVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~~~~~~~~~~~~~---------~~~-~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++|+||.|+.+.....+.......... ... .+.++++||++|+|++++|.++++.+..
T Consensus 110 iilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 110 ILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred EEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence 9999999999654321111111110000 011 2579999999999999999999987754
No 25
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.94 E-value=7.3e-26 Score=146.05 Aligned_cols=128 Identities=17% Similarity=0.292 Sum_probs=100.8
Q ss_pred CCccccee--eEEEe--CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNM--RKVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~--~~~~~--~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+ ..+.. ..+.+++|||+|++++..++..+++.+|++++|||++++.+++.+..|++.+.... +++|+
T Consensus 36 ~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~--~~~pi 113 (189)
T cd04121 36 GYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA--PGVPK 113 (189)
T ss_pred CCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCE
Confidence 46666444 33443 44889999999999999999999999999999999999999999999999996643 57999
Q ss_pred EEEeeCCCCCCCCCH-HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALSK-EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|+...+.+ .+....+. ...++.+++|||++|.||+++|+++++.+..
T Consensus 114 ilVGNK~DL~~~~~v~~~~~~~~a----~~~~~~~~e~SAk~g~~V~~~F~~l~~~i~~ 168 (189)
T cd04121 114 ILVGNRLHLAFKRQVATEQAQAYA----ERNGMTFFEVSPLCNFNITESFTELARIVLM 168 (189)
T ss_pred EEEEECccchhccCCCHHHHHHHH----HHcCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 999999999764332 11112221 1124569999999999999999999987753
No 26
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.94 E-value=2.3e-25 Score=141.01 Aligned_cols=131 Identities=40% Similarity=0.753 Sum_probs=109.3
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
+.||++.+...+..++..+.+|||||++.+..++..+++.++++++|+|+++.+++.....++..+.+.....++|++++
T Consensus 34 ~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv 113 (167)
T cd04160 34 ITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLIL 113 (167)
T ss_pred cCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEE
Confidence 36888888888888899999999999999999999999999999999999998888888888888776554568999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCC--CCCCceeEEEeecccCCChHHHHHHHHH
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKS--ITDREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
+||+|+.......++...+.... .....++++++||++|+|++++++||++
T Consensus 114 ~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 114 ANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred EEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence 99999977655555555554321 2234578999999999999999999975
No 27
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3e-26 Score=137.41 Aligned_cols=136 Identities=34% Similarity=0.637 Sum_probs=126.7
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
.+||+|+|...+.+++.++++||.+|+-..++.|+.|+...+++|+|+|.+|.+........+..+++..+..+...+++
T Consensus 46 tkPtigfnve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~ 125 (182)
T KOG0072|consen 46 TKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVF 125 (182)
T ss_pred cCCCCCcCccccccccccceeeEccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEE
Confidence 47999999999999999999999999999999999999999999999999999888888888888988888888889999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
+||.|........+....++......+.+.++++||.+|+|++..++|+.+.++++
T Consensus 126 anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 126 ANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred eccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHHHHHHHHHhcc
Confidence 99999998888889999999888888889999999999999999999999998865
No 28
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.94 E-value=3e-26 Score=146.36 Aligned_cols=129 Identities=20% Similarity=0.271 Sum_probs=99.9
Q ss_pred CCCcccceeeE---EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHH-HHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVS-RSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~~---~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p 76 (137)
+.||++..+.. +++..+++++|||+|+++++.++..++++++++++|||+++..+++.+ ..|+..+.+.. .++|
T Consensus 30 ~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~--~~~p 107 (176)
T cd04133 30 YIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYA--PNVP 107 (176)
T ss_pred CCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC--CCCC
Confidence 57999855542 334568999999999999999999999999999999999999999998 67998886542 4799
Q ss_pred EEEEeeCCCCCCCCC----------H-HHHHHHhCCCCCCCCce-eEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALS----------K-EDLMEQMGLKSITDREV-CCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~----------~-~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++|+||+|+.+... + .+....+.. ..+. .+++|||++|+||+++|+.+++.+.+
T Consensus 108 iilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~----~~~~~~~~E~SAk~~~nV~~~F~~~~~~~~~ 174 (176)
T cd04133 108 IVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRK----QIGAAAYIECSSKTQQNVKAVFDAAIKVVLQ 174 (176)
T ss_pred EEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHH----HcCCCEEEECCCCcccCHHHHHHHHHHHHhc
Confidence 999999999965321 1 111111110 1122 48999999999999999999987653
No 29
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.94 E-value=8e-26 Score=146.96 Aligned_cols=128 Identities=20% Similarity=0.401 Sum_probs=102.5
Q ss_pred CCCcccceeeEE----EeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMRKV----TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~~~----~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
+.||+|.++... +.+.+++.+|||+|+++++.++..++++++++++|||+++..+++.+..|+..+.+.. .++|
T Consensus 24 ~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~--~~~p 101 (200)
T smart00176 24 YVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVC--ENIP 101 (200)
T ss_pred CCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhC--CCCC
Confidence 468998666533 2356899999999999999999999999999999999999999999999999887642 5799
Q ss_pred EEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++|+||+|+.......+.. .+. ...++.+++|||++|+||+++|++|++.+.+
T Consensus 102 iilvgNK~Dl~~~~v~~~~~-~~~----~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~ 155 (200)
T smart00176 102 IVLCGNKVDVKDRKVKAKSI-TFH----RKKNLQYYDISAKSNYNFEKPFLWLARKLIG 155 (200)
T ss_pred EEEEEECcccccccCCHHHH-HHH----HHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 99999999985432211111 111 1235679999999999999999999987754
No 30
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.94 E-value=1.2e-25 Score=143.19 Aligned_cols=131 Identities=17% Similarity=0.241 Sum_probs=101.7
Q ss_pred CCCcccceee-EE--EeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 1 MIPTVGFNMR-KV--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 1 ~~pt~~~~~~-~~--~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
+.||++..+. .+ ++..+.+++|||||+++++.++..+++.+|++++|||+++..+++.+..|...+.......++|+
T Consensus 31 ~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~pi 110 (172)
T cd04141 31 HDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPL 110 (172)
T ss_pred cCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCE
Confidence 3688886554 23 34458899999999999999999999999999999999999999999888766655433467999
Q ss_pred EEEeeCCCCCCCCCHH-HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALSKE-DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|+....... +....+. ...++++++|||++|.|++++|+++++.+.+
T Consensus 111 ilvgNK~Dl~~~~~v~~~~~~~~a----~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 165 (172)
T cd04141 111 VLVGNKVDLESQRQVTTEEGRNLA----REFNCPFFETSAALRHYIDDAFHGLVREIRR 165 (172)
T ss_pred EEEEEChhhhhcCccCHHHHHHHH----HHhCCEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 9999999986543321 1111221 1124579999999999999999999987764
No 31
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.94 E-value=6.5e-25 Score=141.27 Aligned_cols=131 Identities=34% Similarity=0.578 Sum_probs=112.1
Q ss_pred CCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
.||.+.+...+..+++++.+||+||+..++..+..+++.++++++|+|+++++++.....++..+.+.....++|+++++
T Consensus 46 ~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~ 125 (184)
T smart00178 46 QPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILG 125 (184)
T ss_pred CCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEE
Confidence 57888887888888999999999999999999999999999999999999988888888788877765444679999999
Q ss_pred eCCCCCCCCCHHHHHHHhCCCCC-------CCCceeEEEeecccCCChHHHHHHHHHh
Q 032598 82 NKIDKPEALSKEDLMEQMGLKSI-------TDREVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 82 nK~D~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
||+|+....+..++...++.... ..+.+.+++|||++|+|++++++||.+.
T Consensus 126 NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 126 NKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred eCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence 99999876677788888865432 2356789999999999999999999865
No 32
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3.3e-26 Score=145.18 Aligned_cols=126 Identities=19% Similarity=0.332 Sum_probs=103.4
Q ss_pred CcccceeeE----EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 3 PTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 3 pt~~~~~~~----~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
+|||..+.+ ++++.++.++|||+||++|++....|+++|.|.++|||++...+|+.+.+|+.++..... ++++++
T Consensus 45 sTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad-~nivim 123 (222)
T KOG0087|consen 45 STIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHAD-SNIVIM 123 (222)
T ss_pred cceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCC-CCeEEE
Confidence 688855543 667779999999999999999999999999999999999999999999999999987644 799999
Q ss_pred EEeeCCCCCCCCCHH-HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 79 VLGNKIDKPEALSKE-DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 79 vv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
+|+||+|+.+.+.+. +-...+.. .....++++||..+.|++++|..+...+
T Consensus 124 LvGNK~DL~~lraV~te~~k~~Ae----~~~l~f~EtSAl~~tNVe~aF~~~l~~I 175 (222)
T KOG0087|consen 124 LVGNKSDLNHLRAVPTEDGKAFAE----KEGLFFLETSALDATNVEKAFERVLTEI 175 (222)
T ss_pred EeecchhhhhccccchhhhHhHHH----hcCceEEEecccccccHHHHHHHHHHHH
Confidence 999999998754432 11122211 1234699999999999999998888765
No 33
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=6.3e-26 Score=141.40 Aligned_cols=123 Identities=22% Similarity=0.342 Sum_probs=105.1
Q ss_pred Cccccee----eEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 3 PTVGFNM----RKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 3 pt~~~~~----~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.|+|..+ .+++.+++++++|||+|++.+++....|++.|.|.++|||++..++|..+..|+..+.+.. .+++-++
T Consensus 37 ~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~-~~NmvIm 115 (216)
T KOG0098|consen 37 LTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHS-NENMVIM 115 (216)
T ss_pred ceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhc-CCCcEEE
Confidence 4677444 3577888999999999999999999999999999999999999999999999999998764 4789999
Q ss_pred EEeeCCCCCCCCCH-----HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 79 VLGNKIDKPEALSK-----EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 79 vv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+++||+|+...+.+ ..++++.+. .++++||++++|+++.|...+..+-
T Consensus 116 LiGNKsDL~~rR~Vs~EEGeaFA~ehgL--------ifmETSakt~~~VEEaF~nta~~Iy 168 (216)
T KOG0098|consen 116 LIGNKSDLEARREVSKEEGEAFAREHGL--------IFMETSAKTAENVEEAFINTAKEIY 168 (216)
T ss_pred EEcchhhhhccccccHHHHHHHHHHcCc--------eeehhhhhhhhhHHHHHHHHHHHHH
Confidence 99999999877654 344555544 3889999999999999999887764
No 34
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.94 E-value=6.7e-25 Score=141.09 Aligned_cols=134 Identities=29% Similarity=0.564 Sum_probs=105.5
Q ss_pred CCcccceeeEEE-----eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 2 IPTVGFNMRKVT-----KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 2 ~pt~~~~~~~~~-----~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
.||+|++...+. .+++.+.+|||||++++...+..+++.+|++++|+|+++..+++....|+..+.......++|
T Consensus 32 ~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p 111 (183)
T cd04152 32 VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVP 111 (183)
T ss_pred CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCc
Confidence 488886665433 256899999999999999999999999999999999999888888877887777654446799
Q ss_pred EEEEeeCCCCCCCCCHHHHHHHhCCCCCC-CCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALSKEDLMEQMGLKSIT-DREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++++||+|+.+.....++...+...... ...++++++||++|+|+++++++|.+.+.+
T Consensus 112 ~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~~ 171 (183)
T cd04152 112 VLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMILK 171 (183)
T ss_pred EEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHHHHH
Confidence 99999999997654555554444322221 224668999999999999999999988854
No 35
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.93 E-value=3.2e-26 Score=139.70 Aligned_cols=124 Identities=24% Similarity=0.368 Sum_probs=105.7
Q ss_pred cccceee----EEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEE
Q 032598 4 TVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLV 79 (137)
Q Consensus 4 t~~~~~~----~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 79 (137)
|||..++ .+++..+++.+|||+||++|+.+.+.|+++|.|+|+|||.+..++|..+..|+.++..+...+++-.++
T Consensus 43 tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikml 122 (209)
T KOG0080|consen 43 TIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKML 122 (209)
T ss_pred eeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhh
Confidence 4885554 366778999999999999999999999999999999999999999999999999998877778888899
Q ss_pred EeeCCCCCCCCCHH-----HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 80 LGNKIDKPEALSKE-----DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 80 v~nK~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
|+||+|..+++.+. .+.+.++. -|+++||++.+|++.+|+.+++.+.+
T Consensus 123 VgNKiDkes~R~V~reEG~kfAr~h~~--------LFiE~SAkt~~~V~~~FeelveKIi~ 175 (209)
T KOG0080|consen 123 VGNKIDKESERVVDREEGLKFARKHRC--------LFIECSAKTRENVQCCFEELVEKIIE 175 (209)
T ss_pred hcccccchhcccccHHHHHHHHHhhCc--------EEEEcchhhhccHHHHHHHHHHHHhc
Confidence 99999987655432 24444443 49999999999999999999998864
No 36
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.93 E-value=9.2e-25 Score=137.36 Aligned_cols=130 Identities=32% Similarity=0.622 Sum_probs=106.6
Q ss_pred CCcccceeeEEEe-CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 2 IPTVGFNMRKVTK-GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 2 ~pt~~~~~~~~~~-~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
.||++++...+.. ++..+.+|||||++.+...+..+++.+|++++|+|++++.++.....++..+++.....++|++++
T Consensus 28 ~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv 107 (160)
T cd04156 28 IPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLL 107 (160)
T ss_pred cCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEE
Confidence 5888887776654 468999999999999999999999999999999999998888888888888876544468999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCCC-CCceeEEEeecccCCChHHHHHHHHH
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSIT-DREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
+||+|+.......++...++..... ..+++++++||++|+|++++|++|.+
T Consensus 108 ~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 108 ANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred EECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 9999997655556666555433222 34677999999999999999999875
No 37
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.5e-25 Score=135.87 Aligned_cols=130 Identities=22% Similarity=0.270 Sum_probs=105.7
Q ss_pred CCcccceee--EEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMR--KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~--~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
+.|+|+.+. .++ ++.+++++|||+||++|++..+.|+++|.|.++|||+++.++++.+..|+..+.... .+++-+
T Consensus 39 sHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lA-s~nIvv 117 (214)
T KOG0086|consen 39 SHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLA-SPNIVV 117 (214)
T ss_pred cceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhC-CCcEEE
Confidence 467775554 344 556999999999999999999999999999999999999999999999999886543 378889
Q ss_pred EEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||.|+.+.+.+.-+...- ..+.+.+.++++||++|+|+++.|-..++.+..
T Consensus 118 iL~GnKkDL~~~R~VtflEAs~---FaqEnel~flETSa~TGeNVEEaFl~c~~tIl~ 172 (214)
T KOG0086|consen 118 ILCGNKKDLDPEREVTFLEASR---FAQENELMFLETSALTGENVEEAFLKCARTILN 172 (214)
T ss_pred EEeCChhhcChhhhhhHHHHHh---hhcccceeeeeecccccccHHHHHHHHHHHHHH
Confidence 9999999998877654332221 122345579999999999999999998887753
No 38
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.93 E-value=1.5e-24 Score=136.24 Aligned_cols=131 Identities=38% Similarity=0.762 Sum_probs=113.3
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
+.||++++...+..++..+.+||+||++.+...+..+++.+|++++|+|+++++++.....++..+.......+.|++++
T Consensus 27 ~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv 106 (158)
T cd00878 27 TIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIF 106 (158)
T ss_pred CCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEE
Confidence 35888988888888899999999999999999999999999999999999999889888888888777554578999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHH
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
+||+|+.......++...++........++++++||++|.|++++|++|.+
T Consensus 107 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 107 ANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred eeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 999999877666677777665444456788999999999999999999875
No 39
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.93 E-value=1.5e-25 Score=143.84 Aligned_cols=125 Identities=18% Similarity=0.255 Sum_probs=99.1
Q ss_pred CCCcccceee---EEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHH-HHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVS-RSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~---~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p 76 (137)
+.||++..+. .++.+.+.+.+|||+|++++..+++.+++++|++++|||++++.+++.+ ..|...+.... ++.|
T Consensus 34 ~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~--~~~p 111 (182)
T cd04172 34 YVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC--PNTK 111 (182)
T ss_pred cCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC--CCCC
Confidence 4689885553 2345568899999999999999999999999999999999999999997 78988886642 5799
Q ss_pred EEEEeeCCCCCCC--------------CCH---HHHHHHhCCCCCCCCceeEEEeecccCCC-hHHHHHHHHHhhh
Q 032598 77 LLVLGNKIDKPEA--------------LSK---EDLMEQMGLKSITDREVCCYMISCKNSTN-IDTVIDWLVKHSK 134 (137)
Q Consensus 77 ~ivv~nK~D~~~~--------------~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~-v~~~~~~i~~~~~ 134 (137)
+++|+||+|+.+. ... .++.+.++. +.|++|||++|+| |+++|..+++.+.
T Consensus 112 iilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~-------~~~~E~SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 112 MLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGA-------ATYIECSALQSENSVRDIFHVATLACV 180 (182)
T ss_pred EEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCC-------CEEEECCcCCCCCCHHHHHHHHHHHHh
Confidence 9999999998642 111 122222221 2699999999998 9999999998654
No 40
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.93 E-value=1.8e-24 Score=139.72 Aligned_cols=133 Identities=36% Similarity=0.625 Sum_probs=111.0
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
+.||++.+...+..++..+.+||+||++.++..+..++++++++++|+|+++..+++....++..+.+.....+.|++++
T Consensus 47 ~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv 126 (190)
T cd00879 47 HVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLIL 126 (190)
T ss_pred cCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEE
Confidence 46888888888888899999999999999999999999999999999999998888888888888877655567999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCC-----------CCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSI-----------TDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
+||+|+.......++...++.... ....+.+++|||++|+|++++|+|+++.+
T Consensus 127 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 127 GNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred EeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence 999999766566666666654221 12346799999999999999999998753
No 41
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.93 E-value=3.8e-26 Score=135.64 Aligned_cols=125 Identities=28% Similarity=0.464 Sum_probs=106.9
Q ss_pred CCcccceeeE----EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~~----~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
|.|+|+.++. +++.++++++|||+||+++++....|++.+|+++++||+.+..||+..+.|+.++-.... ....+
T Consensus 28 istvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k-~~v~l 106 (192)
T KOG0083|consen 28 ISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAK-EAVAL 106 (192)
T ss_pred eeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHH-hhHhH
Confidence 6788877763 345679999999999999999999999999999999999999999999999998876532 45778
Q ss_pred EEEeeCCCCCCCCCH-----HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALSK-----EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|+...+.+ +.+.+.++.+ |.++||++|-|++-.|-.|++.+++
T Consensus 107 ~llgnk~d~a~er~v~~ddg~kla~~y~ip--------fmetsaktg~nvd~af~~ia~~l~k 161 (192)
T KOG0083|consen 107 MLLGNKCDLAHERAVKRDDGEKLAEAYGIP--------FMETSAKTGFNVDLAFLAIAEELKK 161 (192)
T ss_pred hhhccccccchhhccccchHHHHHHHHCCC--------ceeccccccccHhHHHHHHHHHHHH
Confidence 999999999765432 5677777664 9999999999999999999998875
No 42
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.8e-25 Score=133.78 Aligned_cols=124 Identities=22% Similarity=0.432 Sum_probs=104.1
Q ss_pred Ccccceee--EEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 3 PTVGFNMR--KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 3 pt~~~~~~--~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.|+|+.++ ++- .+.+++++|||+|+++++.+.-.++++++|+|++||+++.+|+..+..|.-++.-. ...+.|+|
T Consensus 52 sTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIkty-sw~naqvi 130 (193)
T KOG0093|consen 52 STVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTY-SWDNAQVI 130 (193)
T ss_pred eeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheee-eccCceEE
Confidence 45664443 332 34589999999999999999999999999999999999999999999998877544 45789999
Q ss_pred EEeeCCCCCCCCCH-----HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 79 VLGNKIDKPEALSK-----EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 79 vv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++||||+.+++.. ..+.++|+. .|+++||+.+.|++++|+.++..+.+
T Consensus 131 lvgnKCDmd~eRvis~e~g~~l~~~LGf--------efFEtSaK~NinVk~~Fe~lv~~Ic~ 184 (193)
T KOG0093|consen 131 LVGNKCDMDSERVISHERGRQLADQLGF--------EFFETSAKENINVKQVFERLVDIICD 184 (193)
T ss_pred EEecccCCccceeeeHHHHHHHHHHhCh--------HHhhhcccccccHHHHHHHHHHHHHH
Confidence 99999999887653 356777765 49999999999999999999988864
No 43
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.93 E-value=4.2e-25 Score=141.45 Aligned_cols=125 Identities=17% Similarity=0.232 Sum_probs=97.9
Q ss_pred CCCcccceee---EEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHH-HHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVS-RSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~---~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p 76 (137)
+.||++..+. .++.+.+++++|||+|++++..+.+.++++++++++|||++++.+++.+ ..|...+.+.. +++|
T Consensus 30 ~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~--~~~~ 107 (178)
T cd04131 30 YVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFC--PNTK 107 (178)
T ss_pred cCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHC--CCCC
Confidence 4688885553 2345568899999999999999999999999999999999999999995 78988886642 5799
Q ss_pred EEEEeeCCCCCCC--------------CCH---HHHHHHhCCCCCCCCceeEEEeecccCCC-hHHHHHHHHHhhh
Q 032598 77 LLVLGNKIDKPEA--------------LSK---EDLMEQMGLKSITDREVCCYMISCKNSTN-IDTVIDWLVKHSK 134 (137)
Q Consensus 77 ~ivv~nK~D~~~~--------------~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~-v~~~~~~i~~~~~ 134 (137)
+++|+||+|+.+. ... .++...++. ..|++|||++|+| |+++|..+++...
T Consensus 108 iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~-------~~~~E~SA~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 108 VLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGA-------EIYLECSAFTSEKSVRDIFHVATMACL 176 (178)
T ss_pred EEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCC-------CEEEECccCcCCcCHHHHHHHHHHHHh
Confidence 9999999998542 111 122222221 2599999999995 9999999998654
No 44
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.93 E-value=2e-24 Score=138.32 Aligned_cols=112 Identities=21% Similarity=0.381 Sum_probs=94.0
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH--H
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK--E 93 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~ 93 (137)
.+.+.+|||||++++...+..+++++|++++|+|+++++++..+..|+..+.......+.|+++|+||+|+.+.... .
T Consensus 62 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~ 141 (180)
T cd04127 62 RIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEE 141 (180)
T ss_pred EEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHH
Confidence 48899999999999999999999999999999999999999999999988876544467899999999999754322 1
Q ss_pred ---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 94 ---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 94 ---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++...+ +++++++||++|.|++++|++|++.+.+
T Consensus 142 ~~~~~~~~~--------~~~~~e~Sak~~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 142 QAKALADKY--------GIPYFETSAATGTNVEKAVERLLDLVMK 178 (180)
T ss_pred HHHHHHHHc--------CCeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 222222 2359999999999999999999987764
No 45
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.93 E-value=9.7e-25 Score=137.86 Aligned_cols=126 Identities=20% Similarity=0.300 Sum_probs=101.1
Q ss_pred CCCcccceee-EEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 1 MIPTVGFNMR-KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 1 ~~pt~~~~~~-~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
+.||++..+. .+. +..+.+++|||||++++..++..+++++|++++|+|.++..+++.+..|+..+.......++|+
T Consensus 30 ~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi 109 (164)
T cd04175 30 YDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPM 109 (164)
T ss_pred cCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 3578875443 333 3467889999999999999999999999999999999999999999999988876555578999
Q ss_pred EEEeeCCCCCCCCCH--H---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 78 LVLGNKIDKPEALSK--E---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 78 ivv~nK~D~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
++++||+|+.+.... . .+.+.+ +++++++||++|.|++++|.++++.+.
T Consensus 110 ilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 163 (164)
T cd04175 110 ILVGNKCDLEDERVVGKEQGQNLARQW--------GCAFLETSAKAKINVNEIFYDLVRQIN 163 (164)
T ss_pred EEEEECCcchhccEEcHHHHHHHHHHh--------CCEEEEeeCCCCCCHHHHHHHHHHHhh
Confidence 999999999754322 1 222222 246999999999999999999998764
No 46
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.93 E-value=6.4e-25 Score=145.29 Aligned_cols=125 Identities=18% Similarity=0.232 Sum_probs=98.8
Q ss_pred CCCcccceeeE---EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHH-HHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVS-RSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~~---~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p 76 (137)
|.||++..+.. ++++.+.+.+|||+|++++..+.+.++++++++++|||+++..+++.+ ..|+..+.... ++.|
T Consensus 42 y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~--~~~p 119 (232)
T cd04174 42 YVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYC--PSTR 119 (232)
T ss_pred cCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhC--CCCC
Confidence 46898865542 345568999999999999999999999999999999999999999984 78988887542 5789
Q ss_pred EEEEeeCCCCCCC------------C--CH---HHHHHHhCCCCCCCCce-eEEEeecccCC-ChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEA------------L--SK---EDLMEQMGLKSITDREV-CCYMISCKNST-NIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~------------~--~~---~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~-~v~~~~~~i~~~~~~ 135 (137)
+++|+||+|+... . .. .++...+ ++ .|++|||++|+ ||+++|..++..+.+
T Consensus 120 iilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~--------~~~~~~EtSAktg~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 120 ILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQL--------GAEVYLECSAFTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred EEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHc--------CCCEEEEccCCcCCcCHHHHHHHHHHHHHH
Confidence 9999999998642 1 11 1222222 23 48999999998 899999999987654
No 47
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.93 E-value=1.6e-24 Score=142.57 Aligned_cols=133 Identities=22% Similarity=0.387 Sum_probs=102.8
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
+.||+|..+.....+.+++.+|||+|++.+..++..+++.++++|+|||+++.++++.+..|+..+... ...++|+++|
T Consensus 28 ~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~-~~~~~piIlV 106 (220)
T cd04126 28 TVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDT-ANEDCLFAVV 106 (220)
T ss_pred CCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCcEEEE
Confidence 368888777666667889999999999999999999999999999999999999999998887777653 2357999999
Q ss_pred eeCCCCCC-------------------CCCH-----HHHHHHhCCC------CCCCCceeEEEeecccCCChHHHHHHHH
Q 032598 81 GNKIDKPE-------------------ALSK-----EDLMEQMGLK------SITDREVCCYMISCKNSTNIDTVIDWLV 130 (137)
Q Consensus 81 ~nK~D~~~-------------------~~~~-----~~~~~~~~~~------~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 130 (137)
+||+|+.+ .+.+ ..+...++.. ......+.|++|||++|+||+++|..++
T Consensus 107 gNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~ 186 (220)
T cd04126 107 GNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLF 186 (220)
T ss_pred EECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHH
Confidence 99999865 1111 1222222210 0001125699999999999999999999
Q ss_pred Hhhh
Q 032598 131 KHSK 134 (137)
Q Consensus 131 ~~~~ 134 (137)
+.+.
T Consensus 187 ~~~~ 190 (220)
T cd04126 187 NLVL 190 (220)
T ss_pred HHHH
Confidence 8765
No 48
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.93 E-value=2.2e-24 Score=140.54 Aligned_cols=131 Identities=26% Similarity=0.356 Sum_probs=101.1
Q ss_pred CCCccccee--eEEE---eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCC---CC
Q 032598 1 MIPTVGFNM--RKVT---KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKP---SL 72 (137)
Q Consensus 1 ~~pt~~~~~--~~~~---~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~---~~ 72 (137)
+.||+|..+ ..+. +..+.+.+|||||++++..++..++++++++++|||++++.+++.+..|+..+.... ..
T Consensus 29 ~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~ 108 (201)
T cd04107 29 YKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNG 108 (201)
T ss_pred CCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCC
Confidence 468888544 3343 446889999999999999999999999999999999999999999998988776432 23
Q ss_pred CCCcEEEEeeCCCCCCC--CCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 73 NGIPLLVLGNKIDKPEA--LSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 73 ~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
.++|+++|+||+|+... ....+.....+.. ..+.++++||++|+|++++|++|++.+.+
T Consensus 109 ~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~e~Sak~~~~v~e~f~~l~~~l~~ 169 (201)
T cd04107 109 EPIPCLLLANKCDLKKRLAKDGEQMDQFCKEN----GFIGWFETSAKEGINIEEAMRFLVKNILA 169 (201)
T ss_pred CCCcEEEEEECCCcccccccCHHHHHHHHHHc----CCceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 67899999999999632 2333332222211 11359999999999999999999988754
No 49
>PTZ00369 Ras-like protein; Provisional
Probab=99.93 E-value=1.4e-24 Score=140.20 Aligned_cols=130 Identities=19% Similarity=0.270 Sum_probs=102.5
Q ss_pred CCCcccceeeE---EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 1 MIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 1 ~~pt~~~~~~~---~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
+.||++..+.. ++.+.+.+++|||||++++..++..+++.++++++|+|+++.++++.+..|...+.......++|+
T Consensus 34 ~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~pi 113 (189)
T PTZ00369 34 YDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPM 113 (189)
T ss_pred cCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 35888866652 445567899999999999999999999999999999999999999999999888876544468999
Q ss_pred EEEeeCCCCCCCCCHH--HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALSKE--DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|+.+..... +...... ..+++++++||++|.|++++|.+|++.+.+
T Consensus 114 iiv~nK~Dl~~~~~i~~~~~~~~~~-----~~~~~~~e~Sak~~~gi~~~~~~l~~~l~~ 168 (189)
T PTZ00369 114 ILVGNKCDLDSERQVSTGEGQELAK-----SFGIPFLETSAKQRVNVDEAFYELVREIRK 168 (189)
T ss_pred EEEEECcccccccccCHHHHHHHHH-----HhCCEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999986543221 1111111 112469999999999999999999987753
No 50
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.92 E-value=1.7e-24 Score=137.26 Aligned_cols=128 Identities=20% Similarity=0.409 Sum_probs=101.6
Q ss_pred CCCcccceeeEEE----eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMRKVT----KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~~~~----~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
+.||++..+.... .+.+.+.+|||+|++.+..++..+++.+|++++|+|+++..+++.+..|+..+.... .++|
T Consensus 29 ~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~p 106 (166)
T cd00877 29 YVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--GNIP 106 (166)
T ss_pred CCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCc
Confidence 3678886655432 346899999999999999999999999999999999999999999988998887653 3799
Q ss_pred EEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++++||+|+.......+... +. ....+.++++||++|+|++++|++|++.+.+
T Consensus 107 iiiv~nK~Dl~~~~~~~~~~~-~~----~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 107 IVLCGNKVDIKDRKVKAKQIT-FH----RKKNLQYYEISAKSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred EEEEEEchhcccccCCHHHHH-HH----HHcCCEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence 999999999974332222211 11 1234579999999999999999999988865
No 51
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.92 E-value=9.9e-24 Score=131.89 Aligned_cols=131 Identities=77% Similarity=1.258 Sum_probs=109.8
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
+.||++.++..+..+++.+.+||+||++.++..+..+++.+|++++|+|+++..++.....++..+.......++|++++
T Consensus 28 ~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv 107 (159)
T cd04159 28 TIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVL 107 (159)
T ss_pred ccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEE
Confidence 46899998888888889999999999999999999999999999999999998888877777777766544468999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHH
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
+||+|+.+......+...++......+.++++++||++|.|+++++++|.+
T Consensus 108 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 108 GNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred EeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 999999776555556666554444445678999999999999999999975
No 52
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.92 E-value=2.4e-24 Score=137.60 Aligned_cols=131 Identities=17% Similarity=0.194 Sum_probs=97.3
Q ss_pred CCCcccceee-EEEeC--CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMR-KVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~-~~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p 76 (137)
+.||++..+. .+..+ .+++++|||+|++++..++..+++.+|++++|||++++++++.+. .|+..+... .+++|
T Consensus 30 ~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~--~~~~p 107 (175)
T cd01874 30 YVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH--CPKTP 107 (175)
T ss_pred CCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCC
Confidence 5689986664 34433 488999999999999999999999999999999999999999986 587777553 25799
Q ss_pred EEEEeeCCCCCCCCCHHHHHHHhCCC---------CC-CCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 77 LLVLGNKIDKPEALSKEDLMEQMGLK---------SI-TDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~~~~~~~~~~~---------~~-~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
+++++||+|+.......+........ .. ....+.++++||++|+|++++|+.++.++
T Consensus 108 iilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 108 FLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 174 (175)
T ss_pred EEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 99999999986532211100000000 00 01135799999999999999999998864
No 53
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.92 E-value=1.5e-24 Score=142.96 Aligned_cols=128 Identities=20% Similarity=0.350 Sum_probs=101.9
Q ss_pred CCCcccceeeEEE----eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMRKVT----KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~~~~----~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
+.||+|..+.... .+.+.+.+|||+|++++..++..+++.++++|+|||+++..+++.+..|+..+... ..++|
T Consensus 42 ~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~--~~~~p 119 (219)
T PLN03071 42 YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIP 119 (219)
T ss_pred cCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHh--CCCCc
Confidence 4689987665432 34589999999999999999999999999999999999999999999999988764 25799
Q ss_pred EEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++|+||+|+.......+.. .+. ....+.++++||++|+|++++|++|++.+.+
T Consensus 120 iilvgNK~Dl~~~~v~~~~~-~~~----~~~~~~~~e~SAk~~~~i~~~f~~l~~~~~~ 173 (219)
T PLN03071 120 IVLCGNKVDVKNRQVKAKQV-TFH----RKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (219)
T ss_pred EEEEEEchhhhhccCCHHHH-HHH----HhcCCEEEEcCCCCCCCHHHHHHHHHHHHHc
Confidence 99999999986432211111 111 1124569999999999999999999988753
No 54
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.92 E-value=1.8e-25 Score=139.12 Aligned_cols=131 Identities=24% Similarity=0.391 Sum_probs=103.9
Q ss_pred CCcccceee----EEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCC---CC
Q 032598 2 IPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSL---NG 74 (137)
Q Consensus 2 ~pt~~~~~~----~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~ 74 (137)
-.|||..+. .++..-+.+++|||+||++|.++.-.++++||.+++|||..++++++.+..|..+++..... ..
T Consensus 39 kaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~ 118 (210)
T KOG0394|consen 39 KATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPET 118 (210)
T ss_pred ccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCc
Confidence 467884433 35555688999999999999999999999999999999999999999999999999987542 35
Q ss_pred CcEEEEeeCCCCCCCC--CH-HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 75 IPLLVLGNKIDKPEAL--SK-EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 75 ~p~ivv~nK~D~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
.|++++|||+|+.+.. .+ .......-. ...+++|+++|||.+.||.++|..+.+.+..
T Consensus 119 FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~---s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~ 179 (210)
T KOG0394|consen 119 FPFVILGNKIDVDGGKSRQVSEKKAQTWCK---SKGNIPYFETSAKEATNVDEAFEEIARRALA 179 (210)
T ss_pred ccEEEEcccccCCCCccceeeHHHHHHHHH---hcCCceeEEecccccccHHHHHHHHHHHHHh
Confidence 8999999999997632 21 112222211 1236689999999999999999999988764
No 55
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.92 E-value=3e-24 Score=135.97 Aligned_cols=128 Identities=20% Similarity=0.273 Sum_probs=100.3
Q ss_pred CCcccceee--EE--EeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMR--KV--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~--~~--~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||+|..+. .+ +.+.+++.+|||||++++...+..++++++++++|+|++++++++.+..|+..+.... .++.|+
T Consensus 32 ~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~i 110 (166)
T cd04122 32 PHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVI 110 (166)
T ss_pred CcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeE
Confidence 467775543 23 3345789999999999999999999999999999999999999999999988875542 357899
Q ss_pred EEEeeCCCCCCCCCH--HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALSK--EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|+.+.... .+...... ..+++++++||++|+|++++|.++++.+.+
T Consensus 111 iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~~i~e~f~~l~~~~~~ 165 (166)
T cd04122 111 FLIGNKADLEAQRDVTYEEAKQFAD-----ENGLLFLECSAKTGENVEDAFLETAKKIYQ 165 (166)
T ss_pred EEEEECcccccccCcCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 999999999765432 22222111 124579999999999999999999988754
No 56
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.92 E-value=9.3e-24 Score=134.38 Aligned_cols=130 Identities=32% Similarity=0.651 Sum_probs=111.3
Q ss_pred CCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
.||.|++...+...+..+.+||+||+..+...+..+++.++++++|+|+++..++.....++..+.+.....++|+++++
T Consensus 43 ~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 122 (173)
T cd04155 43 TPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFA 122 (173)
T ss_pred CCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEE
Confidence 58889888888888999999999999999999999999999999999999988888777777777665444679999999
Q ss_pred eCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHH
Q 032598 82 NKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 82 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
||+|+.......++.+.++......+.++++++||++|+|++++|+||++
T Consensus 123 nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 123 NKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred ECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 99999776667777777776555556677899999999999999999975
No 57
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.92 E-value=2.2e-24 Score=139.47 Aligned_cols=132 Identities=15% Similarity=0.226 Sum_probs=99.7
Q ss_pred CCCcccceee-E--EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCC--CCCC
Q 032598 1 MIPTVGFNMR-K--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPS--LNGI 75 (137)
Q Consensus 1 ~~pt~~~~~~-~--~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~ 75 (137)
+.||++..+. . +++..+.+++|||||++++..++..+++.+|++++|||+++..+++.+..|+..+..... ..++
T Consensus 28 ~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~ 107 (190)
T cd04144 28 YDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADV 107 (190)
T ss_pred CCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCC
Confidence 3577775443 2 333446799999999999999999999999999999999999999999889888765432 3578
Q ss_pred cEEEEeeCCCCCCCCCHH-HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 76 PLLVLGNKIDKPEALSKE-DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 76 p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
|+++++||+|+....... .....+. ...++.++++||++|+|++++|+++++.+.++
T Consensus 108 piilvgNK~Dl~~~~~v~~~~~~~~~----~~~~~~~~e~SAk~~~~v~~l~~~l~~~l~~~ 165 (190)
T cd04144 108 PIMIVGNKCDKVYEREVSTEEGAALA----RRLGCEFIEASAKTNVNVERAFYTLVRALRQQ 165 (190)
T ss_pred CEEEEEEChhccccCccCHHHHHHHH----HHhCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999996543321 1111111 01124699999999999999999999887643
No 58
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.92 E-value=2.7e-24 Score=135.46 Aligned_cols=128 Identities=18% Similarity=0.283 Sum_probs=98.3
Q ss_pred CCccccee-eEEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 2 IPTVGFNM-RKVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 2 ~pt~~~~~-~~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.||++..+ ..+. +..+.+++|||||++++..++..+++.++++++|+|+++..+++.+..|+..+.......++|++
T Consensus 31 ~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii 110 (163)
T cd04136 31 DPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMV 110 (163)
T ss_pred CCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 57776333 2333 34578899999999999999999999999999999999999999999998888765444679999
Q ss_pred EEeeCCCCCCCCCHH-HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 79 VLGNKIDKPEALSKE-DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 79 vv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
+++||+|+.+..... +....+.. ..+.+++++||++|+|++++|+++++.+
T Consensus 111 lv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 111 LVGNKCDLEDERVVSREEGQALAR----QWGCPFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred EEEECccccccceecHHHHHHHHH----HcCCeEEEecCCCCCCHHHHHHHHHHhc
Confidence 999999986543221 11111111 0124699999999999999999998765
No 59
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.92 E-value=2.1e-24 Score=138.67 Aligned_cols=129 Identities=21% Similarity=0.356 Sum_probs=98.6
Q ss_pred CCCcccceee--EEEeC--CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMR--KVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~--~~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
|.||+|.++. .+..+ .+.+.+|||+|++++..++..+++.++++++|+|++++.+++.+..|+..+.+... ...|
T Consensus 29 ~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~-~~~p 107 (182)
T cd04128 29 YIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNK-TAIP 107 (182)
T ss_pred CCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCE
Confidence 5789997663 44433 48899999999999999999999999999999999999999999999998876432 4567
Q ss_pred EEEEeeCCCCCCCCC------HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALS------KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++|+||+|+..... ..+....+. ...++.++++||++|+|++++|+++++.+.+
T Consensus 108 -ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a----~~~~~~~~e~SAk~g~~v~~lf~~l~~~l~~ 167 (182)
T cd04128 108 -ILVGTKYDLFADLPPEEQEEITKQARKYA----KAMKAPLIFCSTSHSINVQKIFKIVLAKAFD 167 (182)
T ss_pred -EEEEEchhccccccchhhhhhHHHHHHHH----HHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 67899999853211 111111111 1123569999999999999999999987754
No 60
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.92 E-value=4.6e-24 Score=135.72 Aligned_cols=131 Identities=21% Similarity=0.350 Sum_probs=100.0
Q ss_pred CCCcccceee--EEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMR--KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~--~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
|.||++..+. .+. +..+++++|||||++++..++..+++.+|++++|+|+++.++++.+..|+..+.+.......|
T Consensus 29 ~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ 108 (170)
T cd04108 29 YKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVL 108 (170)
T ss_pred CCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCe
Confidence 4688885553 333 345789999999999999999999999999999999999989999999999886653334578
Q ss_pred EEEEeeCCCCCCCCCH---HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALSK---EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++|+||+|+.+.... .+....+.. ..+..++++||++|.|++++|+.|++.+.+
T Consensus 109 iilVgnK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~e~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 109 LFLVGTKKDLSSPAQYALMEQDAIKLAA----EMQAEYWSVSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred EEEEEEChhcCccccccccHHHHHHHHH----HcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 9999999998654321 111111110 012358999999999999999999988754
No 61
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.92 E-value=2.3e-24 Score=130.03 Aligned_cols=128 Identities=23% Similarity=0.479 Sum_probs=104.1
Q ss_pred CCCcccce--eeEE--EeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFN--MRKV--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~--~~~~--~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
|+.|+|.. ++++ +++.+++++|||+|+++|+.+...|+++.++++.|||.++.+||....+|++++... ....|
T Consensus 37 YitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~n--cdsv~ 114 (198)
T KOG0079|consen 37 YITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNN--CDSVP 114 (198)
T ss_pred eEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhc--Ccccc
Confidence 67888844 4454 467799999999999999999999999999999999999999999999999999765 34788
Q ss_pred EEEEeeCCCCCCCCCHH-HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 77 LLVLGNKIDKPEALSKE-DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
-++|+||.|.++.+.+. +-...+.. .-++.+|++||+..+|++..|.-|.+.+.
T Consensus 115 ~vLVGNK~d~~~RrvV~t~dAr~~A~----~mgie~FETSaKe~~NvE~mF~cit~qvl 169 (198)
T KOG0079|consen 115 KVLVGNKNDDPERRVVDTEDARAFAL----QMGIELFETSAKENENVEAMFHCITKQVL 169 (198)
T ss_pred ceecccCCCCccceeeehHHHHHHHH----hcCchheehhhhhcccchHHHHHHHHHHH
Confidence 99999999998765432 11222211 11346999999999999999999988765
No 62
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.92 E-value=1.9e-24 Score=132.38 Aligned_cols=125 Identities=24% Similarity=0.379 Sum_probs=102.4
Q ss_pred CCcccceee--EE---EeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCC-C
Q 032598 2 IPTVGFNMR--KV---TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNG-I 75 (137)
Q Consensus 2 ~pt~~~~~~--~~---~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~ 75 (137)
-||+|..+. -+ ++..+++++|||+||+++++....|++++-|+++|||+++.+||+.+..|..+.......+. +
T Consensus 38 dptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~ 117 (213)
T KOG0091|consen 38 DPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKV 117 (213)
T ss_pred CCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCee
Confidence 388885553 23 25579999999999999999999999999999999999999999999999998877655444 4
Q ss_pred cEEEEeeCCCCCCCCCH-----HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 76 PLLVLGNKIDKPEALSK-----EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 76 p~ivv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
-+.+|++|+|+...+.+ +++....+ ..|+++||++|.||++.|.-+.+.+-
T Consensus 118 VFlLVGhKsDL~SqRqVt~EEaEklAa~hg--------M~FVETSak~g~NVeEAF~mlaqeIf 173 (213)
T KOG0091|consen 118 VFLLVGHKSDLQSQRQVTAEEAEKLAASHG--------MAFVETSAKNGCNVEEAFDMLAQEIF 173 (213)
T ss_pred EEEEeccccchhhhccccHHHHHHHHHhcC--------ceEEEecccCCCcHHHHHHHHHHHHH
Confidence 45788999999987664 23444444 45999999999999999999887764
No 63
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.92 E-value=1.8e-23 Score=131.94 Aligned_cols=127 Identities=20% Similarity=0.363 Sum_probs=99.4
Q ss_pred CCCcccceee--EEEeC--CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMR--KVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~--~~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
+.||+|.++. .+... .+++.+|||+|++++..++..+++.+|++++|||+++.++++.+..|+..+.... ..++|
T Consensus 29 ~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~-~~~~~ 107 (161)
T cd04117 29 HISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYA-PEGVQ 107 (161)
T ss_pred CCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCe
Confidence 3688886543 34443 4788999999999999999999999999999999999999999999998886543 25799
Q ss_pred EEEEeeCCCCCCCCCH-HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHh
Q 032598 77 LLVLGNKIDKPEALSK-EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
+++++||+|+.+.+.+ .+....+.. ..+++++++||++|.|++++|.+|++.
T Consensus 108 iilvgnK~Dl~~~~~v~~~~~~~~~~----~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 108 KILIGNKADEEQKRQVGDEQGNKLAK----EYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred EEEEEECcccccccCCCHHHHHHHHH----HcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 9999999999765432 122222211 112469999999999999999999875
No 64
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.92 E-value=7.6e-24 Score=133.61 Aligned_cols=128 Identities=14% Similarity=0.235 Sum_probs=97.6
Q ss_pred CCcccce-eeEE--EeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 2 IPTVGFN-MRKV--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 2 ~pt~~~~-~~~~--~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.||++.. ...+ ++....+++|||||++++..++..+++++|++++|+|+++.++++++..|+..+.......++|++
T Consensus 31 ~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piv 110 (163)
T cd04176 31 DPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPII 110 (163)
T ss_pred CCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 5666522 2233 334567899999999999999999999999999999999999999999998888775444689999
Q ss_pred EEeeCCCCCCCCCHH-HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 79 VLGNKIDKPEALSKE-DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 79 vv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
+++||+|+....... .....+.. ..+++++++||++|.|++++|.++++.+
T Consensus 111 iv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 111 LVGNKVDLESEREVSSAEGRALAE----EWGCPFMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred EEEECccchhcCccCHHHHHHHHH----HhCCEEEEecCCCCCCHHHHHHHHHHhc
Confidence 999999986533221 11122211 1124689999999999999999998765
No 65
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.91 E-value=1.4e-23 Score=132.28 Aligned_cols=127 Identities=20% Similarity=0.270 Sum_probs=98.6
Q ss_pred CCcccceee-E--EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 2 IPTVGFNMR-K--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 2 ~pt~~~~~~-~--~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.||++..+. . +++..+.+++|||||++++..++..+++.+|++++|+|+++..+++.+..|+..+.+.....++|++
T Consensus 32 ~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii 111 (164)
T cd04145 32 DPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMI 111 (164)
T ss_pred CCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEE
Confidence 466664333 2 3344578999999999999999999999999999999999999999999998888765445689999
Q ss_pred EEeeCCCCCCCCCH--HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 79 VLGNKIDKPEALSK--EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 79 vv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
+++||+|+...... .+.....+ ..++.++++||++|+|++++|+++++.+
T Consensus 112 iv~NK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 112 LVGNKADLEHQRKVSREEGQELAR-----KLKIPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred EEeeCccccccceecHHHHHHHHH-----HcCCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 99999999654322 22211111 1134589999999999999999998765
No 66
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.91 E-value=7.6e-24 Score=139.48 Aligned_cols=126 Identities=18% Similarity=0.245 Sum_probs=97.2
Q ss_pred CCCcccceee---EEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~---~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p 76 (137)
|.||++.++. .+++..+.+.+|||+|++.+..+++.+++.+|++++|||++++++++.+. .|...+... .++.|
T Consensus 30 y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~--~~~~p 107 (222)
T cd04173 30 YVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEF--CPNAK 107 (222)
T ss_pred cCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCC
Confidence 5799987664 24445688999999999999999999999999999999999999999985 566555332 36799
Q ss_pred EEEEeeCCCCCCCCCH-----------------HHHHHHhCCCCCCCCceeEEEeecccCCC-hHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALSK-----------------EDLMEQMGLKSITDREVCCYMISCKNSTN-IDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~-v~~~~~~i~~~~~~ 135 (137)
+++|+||+|+...... ..+...++ .+.|++|||++++| |+++|..+..+...
T Consensus 108 iiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~-------~~~y~E~SAk~~~~~V~~~F~~~~~~~~~ 177 (222)
T cd04173 108 VVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVG-------AVSYVECSSRSSERSVRDVFHVATVASLG 177 (222)
T ss_pred EEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcC-------CCEEEEcCCCcCCcCHHHHHHHHHHHHHh
Confidence 9999999999653210 11111221 13699999999985 99999999987654
No 67
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.91 E-value=6.8e-24 Score=137.05 Aligned_cols=133 Identities=19% Similarity=0.219 Sum_probs=99.7
Q ss_pred CCCcccceeeE---EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~~---~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p 76 (137)
+.||++.++.. +++..+.+++|||+|++.+..++..+++.++++++|||+++..+++.+. .|+..+... ..+.|
T Consensus 29 ~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~--~~~~p 106 (189)
T cd04134 29 YEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREH--CPGVK 106 (189)
T ss_pred cCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCC
Confidence 45888765542 3334588999999999999999999999999999999999999998876 588777653 25799
Q ss_pred EEEEeeCCCCCCCCCHHHHHHHhCCC---------CC-CCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALSKEDLMEQMGLK---------SI-TDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~~~~~~~~~~~---------~~-~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++|+||+|+.......+........ .. ....+.++++||++|+|++++|.++++.+..
T Consensus 107 iilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 107 LVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAARVALN 175 (189)
T ss_pred EEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHHhc
Confidence 99999999997654322211111000 00 1123579999999999999999999988764
No 68
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.91 E-value=1.7e-23 Score=132.43 Aligned_cols=126 Identities=21% Similarity=0.415 Sum_probs=99.6
Q ss_pred CCCcccceee--EEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMR--KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~--~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
+.||+|..+. .+. .+.+.+.+|||+|++++...+..+++.++++++|+|+++.++++.+..|+..+.... ....|
T Consensus 30 ~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p 108 (165)
T cd01865 30 FVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQ 108 (165)
T ss_pred CCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCC
Confidence 3577775443 333 345889999999999999999999999999999999999999999999998886542 24689
Q ss_pred EEEEeeCCCCCCCCCH--H---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALSK--E---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++++||+|+.+.... . ++...+ +++++++||++|.|++++|++|++.+.+
T Consensus 109 iivv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 164 (165)
T cd01865 109 VILVGNKCDMEDERVVSSERGRQLADQL--------GFEFFEASAKENINVKQVFERLVDIICD 164 (165)
T ss_pred EEEEEECcccCcccccCHHHHHHHHHHc--------CCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 9999999999755332 2 222222 2359999999999999999999987754
No 69
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.91 E-value=1.2e-23 Score=134.33 Aligned_cols=130 Identities=19% Similarity=0.221 Sum_probs=94.3
Q ss_pred CCCcccceee---EEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~---~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p 76 (137)
+.||++..+. .+++..+++.+|||+|++.+..++..+++++|++++|||++++++++.+. .|+..+... ..+.|
T Consensus 30 ~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~--~~~~p 107 (174)
T cd01871 30 YIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH--CPNTP 107 (174)
T ss_pred CCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCC
Confidence 4677774433 23344588999999999999999999999999999999999999999986 577766543 25799
Q ss_pred EEEEeeCCCCCCCCC-HHHHHHHhCCC---------CCCCCceeEEEeecccCCChHHHHHHHHHh
Q 032598 77 LLVLGNKIDKPEALS-KEDLMEQMGLK---------SITDREVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~-~~~~~~~~~~~---------~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
+++++||+|+.+... ...+....... ......+.+++|||++|+|++++|+.+++.
T Consensus 108 iilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 108 IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred EEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence 999999999964321 11111100000 000112468999999999999999999864
No 70
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.91 E-value=2.2e-23 Score=132.15 Aligned_cols=129 Identities=24% Similarity=0.396 Sum_probs=101.1
Q ss_pred CCCccccee--eEEEe--CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNM--RKVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~--~~~~~--~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
+.||++..+ ..+.. ..+.+++|||||++++...+..+++.+|++++|+|+++.++++.+..|+..+.... ..+.|
T Consensus 32 ~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p 110 (167)
T cd01867 32 FISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHA-SEDVE 110 (167)
T ss_pred cccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhC-CCCCc
Confidence 467888544 33443 34789999999999999999999999999999999999999999999998887642 35789
Q ss_pred EEEEeeCCCCCCCCC--HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++++||+|+.+... ..+...... ..+++++++||++|+|++++|.++++.+.+
T Consensus 111 ~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 166 (167)
T cd01867 111 RMLVGNKCDMEEKRVVSKEEGEALAD-----EYGIKFLETSAKANINVEEAFFTLAKDIKK 166 (167)
T ss_pred EEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 999999999975432 222222111 113469999999999999999999998865
No 71
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.91 E-value=1.2e-23 Score=132.87 Aligned_cols=129 Identities=19% Similarity=0.334 Sum_probs=100.6
Q ss_pred CCCcccceee--EEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCC----
Q 032598 1 MIPTVGFNMR--KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSL---- 72 (137)
Q Consensus 1 ~~pt~~~~~~--~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~---- 72 (137)
+.||++..+. .+. +..+.+++|||||++.+..++..+++.++++++|+|++++.+++.+..|+..+.+....
T Consensus 29 ~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~ 108 (168)
T cd04119 29 YLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNM 108 (168)
T ss_pred CCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccC
Confidence 4688885543 333 45689999999999999999999999999999999999999999999999988765432
Q ss_pred CCCcEEEEeeCCCCCCCC--CHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 73 NGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 73 ~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
.++|+++++||+|+.+.. ...+...... ..++.++++||++|+|++++|++|.+.+.
T Consensus 109 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~ 167 (168)
T cd04119 109 ENIVVVVCANKIDLTKHRAVSEDEGRLWAE-----SKGFKYFETSACTGEGVNEMFQTLFSSIV 167 (168)
T ss_pred CCceEEEEEEchhcccccccCHHHHHHHHH-----HcCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 579999999999996432 2222211111 11246999999999999999999998875
No 72
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=3.5e-24 Score=129.56 Aligned_cols=127 Identities=22% Similarity=0.388 Sum_probs=102.6
Q ss_pred Ccccce--eeE--EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 3 PTVGFN--MRK--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 3 pt~~~~--~~~--~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.|||.. .++ +.++++++++|||+|++++++....|++.|+++|+|||++...+|+-+..|+.++.+..+ ...-.+
T Consensus 38 atigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan-~kvlki 116 (213)
T KOG0095|consen 38 ATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYAN-NKVLKI 116 (213)
T ss_pred ceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhh-cceEEE
Confidence 466633 333 557789999999999999999999999999999999999999999999999999988755 456679
Q ss_pred EEeeCCCCCCCCCH-HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 79 VLGNKIDKPEALSK-EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 79 vv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+|+||.|+.+.+.+ +++-+.+... ....|+++||+..+|++.+|..++-.+.
T Consensus 117 lvgnk~d~~drrevp~qigeefs~~----qdmyfletsakea~nve~lf~~~a~rli 169 (213)
T KOG0095|consen 117 LVGNKIDLADRREVPQQIGEEFSEA----QDMYFLETSAKEADNVEKLFLDLACRLI 169 (213)
T ss_pred eeccccchhhhhhhhHHHHHHHHHh----hhhhhhhhcccchhhHHHHHHHHHHHHH
Confidence 99999999876543 3444444422 2345899999999999999999886553
No 73
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=9.1e-24 Score=128.91 Aligned_cols=126 Identities=24% Similarity=0.412 Sum_probs=104.9
Q ss_pred CCcccceeeE----EEe---------CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhc
Q 032598 2 IPTVGFNMRK----VTK---------GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLS 68 (137)
Q Consensus 2 ~pt~~~~~~~----~~~---------~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~ 68 (137)
|.|+|+.++. ++. ..+.+++|||+||++++++.-.+++.|=|++++||+++.+||-.++.|+.++..
T Consensus 39 IsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~ 118 (219)
T KOG0081|consen 39 ISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQT 118 (219)
T ss_pred EEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHH
Confidence 5778866653 221 248899999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCcEEEEeeCCCCCCCCCH-----HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 69 KPSLNGIPLLVLGNKIDKPEALSK-----EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 69 ~~~~~~~p~ivv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
..-..++.+++++||+|+.+.+.+ ..+.+.++. +|+++||.+|.||++..+-+...+.+
T Consensus 119 hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kygl--------PYfETSA~tg~Nv~kave~LldlvM~ 182 (219)
T KOG0081|consen 119 HAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGL--------PYFETSACTGTNVEKAVELLLDLVMK 182 (219)
T ss_pred hhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCC--------CeeeeccccCcCHHHHHHHHHHHHHH
Confidence 666667889999999999877654 345666665 49999999999999988888776653
No 74
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.91 E-value=1.8e-23 Score=131.41 Aligned_cols=127 Identities=15% Similarity=0.225 Sum_probs=97.9
Q ss_pred CCcccceee-E--EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 2 IPTVGFNMR-K--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 2 ~pt~~~~~~-~--~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.||++..+. . ++...+.+.+|||+|++++..++..+++.++++++|+|+++..+++.+..|...+.+.....++|++
T Consensus 31 ~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~pii 110 (162)
T cd04138 31 DPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMV 110 (162)
T ss_pred CCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 577774443 2 3334467899999999999999999999999999999999988999888888888765545689999
Q ss_pred EEeeCCCCCCCCC-HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 79 VLGNKIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 79 vv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
+++||+|+.+... ..+.....+. .++.++++||++|.|++++|+++++.+
T Consensus 111 vv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 111 LVGNKCDLAARTVSSRQGQDLAKS-----YGIPYIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred EEEECcccccceecHHHHHHHHHH-----hCCeEEEecCCCCCCHHHHHHHHHHHh
Confidence 9999999965322 2222221111 133599999999999999999998764
No 75
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.91 E-value=8.2e-24 Score=137.17 Aligned_cols=113 Identities=15% Similarity=0.175 Sum_probs=85.1
Q ss_pred EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCCCCC-
Q 032598 12 VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPLLVLGNKIDKPEA- 89 (137)
Q Consensus 12 ~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~- 89 (137)
+++..+.+++|||+|++. .....+++++|++++|||+++..+++.+. .|...+.... +++|+++|+||+|+...
T Consensus 61 ~~~~~v~l~iwDTaG~~~--~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~ 136 (195)
T cd01873 61 VDGVSVSLRLWDTFGDHD--KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC--PRVPVILVGCKLDLRYAD 136 (195)
T ss_pred eCCEEEEEEEEeCCCChh--hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhccccc
Confidence 455679999999999975 24556899999999999999999999986 5888775542 47899999999998641
Q ss_pred ------------------CCH-HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHh
Q 032598 90 ------------------LSK-EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 90 ------------------~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
+.+ .+....+. ...++.|++|||++|+||+++|+.+++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a----~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 137 LDEVNRARRPLARPIKNADILPPETGRAVA----KELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred cchhhhcccccccccccCCccCHHHHHHHH----HHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 111 11111111 1123469999999999999999999875
No 76
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.91 E-value=6.4e-23 Score=134.94 Aligned_cols=131 Identities=19% Similarity=0.276 Sum_probs=99.9
Q ss_pred CCCcccceee--EEEe---CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCC--CC
Q 032598 1 MIPTVGFNMR--KVTK---GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPS--LN 73 (137)
Q Consensus 1 ~~pt~~~~~~--~~~~---~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~ 73 (137)
+.||++..+. .+.. ..+.+.+|||+|++.+..++..+++.+|++++|+|++++++++.+..|+..+.+... ..
T Consensus 29 ~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~ 108 (215)
T cd04109 29 YKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSET 108 (215)
T ss_pred CCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCC
Confidence 4588885543 3432 358999999999999999999999999999999999999999999999888876532 24
Q ss_pred CCcEEEEeeCCCCCCCCCHH-HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 74 GIPLLVLGNKIDKPEALSKE-DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 74 ~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++|+++|+||+|+.+.+... +....+.. ..++.++++||++|+|++++|+++++.+..
T Consensus 109 ~~piilVgNK~DL~~~~~v~~~~~~~~~~----~~~~~~~~iSAktg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 109 QPLVVLVGNKTDLEHNRTVKDDKHARFAQ----ANGMESCLVSAKTGDRVNLLFQQLAAELLG 167 (215)
T ss_pred CceEEEEEECcccccccccCHHHHHHHHH----HcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 57899999999997543321 11111111 012458999999999999999999988753
No 77
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.91 E-value=5e-23 Score=130.26 Aligned_cols=128 Identities=23% Similarity=0.409 Sum_probs=99.7
Q ss_pred CCccccee--eEEEe--CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNM--RKVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~--~~~~~--~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+ ..+.. ..+.+++|||||++++...+..+++.+|++++|+|+++.+++..+..|+..+.... ..+.|+
T Consensus 32 ~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~-~~~~~~ 110 (166)
T cd01869 32 ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYA-SENVNK 110 (166)
T ss_pred CCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhC-CCCCcE
Confidence 57777443 33443 34789999999999999999999999999999999999999999999998886543 256899
Q ss_pred EEEeeCCCCCCCCCH--HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALSK--EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|+...... .+...... ..+++++++||++|+|++++|.++++.+.+
T Consensus 111 iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 165 (166)
T cd01869 111 LLVGNKCDLTDKRVVDYSEAQEFAD-----ELGIPFLETSAKNATNVEQAFMTMAREIKK 165 (166)
T ss_pred EEEEEChhcccccCCCHHHHHHHHH-----HcCCeEEEEECCCCcCHHHHHHHHHHHHHh
Confidence 999999998654332 22222111 113469999999999999999999998764
No 78
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.91 E-value=5.1e-23 Score=133.18 Aligned_cols=130 Identities=27% Similarity=0.427 Sum_probs=99.7
Q ss_pred CCCcccceeeE--E--EeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMRK--V--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~~--~--~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
+.||++..+.. + ++..+.+++|||||++++...+..+++.+|++++|+|+++..+++.+..|+..+.... ..++|
T Consensus 30 ~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~p 108 (191)
T cd04112 30 FIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYA-QEDVV 108 (191)
T ss_pred cCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCc
Confidence 35777755432 3 3345889999999999999999999999999999999999999999999988887642 24789
Q ss_pred EEEEeeCCCCCCCCC--HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 77 LLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
+++++||+|+...+. ..+. ..+.. ..+++++++||++|+|++++|.+|++.+.++
T Consensus 109 iiiv~NK~Dl~~~~~~~~~~~-~~l~~----~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~ 165 (191)
T cd04112 109 IMLLGNKADMSGERVVKREDG-ERLAK----EYGVPFMETSAKTGLNVELAFTAVAKELKHR 165 (191)
T ss_pred EEEEEEcccchhccccCHHHH-HHHHH----HcCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999964332 1211 11110 0124699999999999999999999887653
No 79
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.91 E-value=5.4e-23 Score=129.78 Aligned_cols=126 Identities=21% Similarity=0.314 Sum_probs=98.9
Q ss_pred CCcccceee-E--EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 2 IPTVGFNMR-K--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 2 ~pt~~~~~~-~--~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.||++..+. . ++...+.+.+|||||++++..++..+++.++++++|+|+++.++++.+..|...+.......++|++
T Consensus 30 ~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii 109 (164)
T smart00173 30 DPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIV 109 (164)
T ss_pred CCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 356653332 2 3334578999999999999999999999999999999999999999998888887765555679999
Q ss_pred EEeeCCCCCCCCCH--HH---HHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 79 VLGNKIDKPEALSK--ED---LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 79 vv~nK~D~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++||+|+...... .. ....+ +..++++||++|+|++++|++|++.+.+
T Consensus 110 ~v~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 163 (164)
T smart00173 110 LVGNKCDLESERVVSTEEGKELARQW--------GCPFLETSAKERVNVDEAFYDLVREIRK 163 (164)
T ss_pred EEEECccccccceEcHHHHHHHHHHc--------CCEEEEeecCCCCCHHHHHHHHHHHHhh
Confidence 99999999754321 11 22222 2469999999999999999999988753
No 80
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=4.6e-24 Score=131.66 Aligned_cols=135 Identities=32% Similarity=0.622 Sum_probs=120.4
Q ss_pred CCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
.||+|.|..+++..+..+.+||.+||+..+++|..|+..++++++++|+++++.++.....++.........+.|+++.+
T Consensus 54 ~~tvgLnig~i~v~~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~la 133 (197)
T KOG0076|consen 54 TPTVGLNIGTIEVCNAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLA 133 (197)
T ss_pred ecccceeecceeeccceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhc
Confidence 48999999999988999999999999999999999999999999999999999999988888888887777899999999
Q ss_pred eCCCCCCCCCHHHHHHHhCCCCC-CCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 82 NKIDKPEALSKEDLMEQMGLKSI-TDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 82 nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
||.|+.+.....++...++.... ..+.+.+.++||..|+||++...|++..+.++
T Consensus 134 nkqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 134 NKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred chhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 99999988777777777764222 34567899999999999999999999988654
No 81
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.90 E-value=6e-23 Score=134.70 Aligned_cols=130 Identities=21% Similarity=0.336 Sum_probs=100.4
Q ss_pred CCcccceee--EEE---eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 2 IPTVGFNMR--KVT---KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 2 ~pt~~~~~~--~~~---~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
.||+|.++. .+. +..+.+++|||+|++++..++..+++.+|++++|||++++.+++.+..|+..+........+|
T Consensus 32 ~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~ 111 (211)
T cd04111 32 DPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPV 111 (211)
T ss_pred CceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCe
Confidence 477775543 333 235789999999999999999999999999999999999999999999999887654445688
Q ss_pred EEEEeeCCCCCCCCCH-HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALSK-EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++++||+|+.+.... .+....+.. ..++.++++||++|+|++++|++|++.+.+
T Consensus 112 iilvgNK~Dl~~~~~v~~~~~~~~~~----~~~~~~~e~Sak~g~~v~e~f~~l~~~~~~ 167 (211)
T cd04111 112 FILVGHKCDLESQRQVTREEAEKLAK----DLGMKYIETSARTGDNVEEAFELLTQEIYE 167 (211)
T ss_pred EEEEEEccccccccccCHHHHHHHHH----HhCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999764332 111122211 112469999999999999999999987753
No 82
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.90 E-value=7.2e-23 Score=129.52 Aligned_cols=128 Identities=18% Similarity=0.243 Sum_probs=96.4
Q ss_pred CCCcccceeeE---EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCC--CCCCC
Q 032598 1 MIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKP--SLNGI 75 (137)
Q Consensus 1 ~~pt~~~~~~~---~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~ 75 (137)
+.||++..+.. .+.+.+.+.+|||||++++..++..+++.++++++|+|+++.++++.+..|+..+.... ...++
T Consensus 30 ~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~ 109 (165)
T cd04140 30 YIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKI 109 (165)
T ss_pred cCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 35777754443 23455889999999999999999999999999999999999999998888877665432 23679
Q ss_pred cEEEEeeCCCCCCCCCHH-HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHh
Q 032598 76 PLLVLGNKIDKPEALSKE-DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 76 p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
|+++++||+|+...+... +....+.. ..++.++++||++|+|++++|++|++.
T Consensus 110 piilv~nK~Dl~~~~~v~~~~~~~~~~----~~~~~~~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 110 PIMLVGNKCDESHKREVSSNEGAACAT----EWNCAFMETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred CEEEEEECccccccCeecHHHHHHHHH----HhCCcEEEeecCCCCCHHHHHHHHHhc
Confidence 999999999997643321 11111110 123469999999999999999999864
No 83
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.90 E-value=9.4e-23 Score=132.71 Aligned_cols=128 Identities=23% Similarity=0.441 Sum_probs=100.4
Q ss_pred CCCccccee--eEEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNM--RKVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~--~~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
+.||++..+ ..+. +..+.+.+|||||++.++.++..+++.++++++|+|++++++++.+..|+..+... ....|
T Consensus 35 ~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~--~~~~p 112 (199)
T cd04110 35 YITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQN--CDDVC 112 (199)
T ss_pred cCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCCC
Confidence 468888554 3444 33478999999999999999999999999999999999999999999999887654 25689
Q ss_pred EEEEeeCCCCCCCCCH--HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALSK--EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++++||+|+.+.... .+....... .++.++++||++|.|++++|++|.+.+..
T Consensus 113 iivVgNK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~e~Sa~~~~gi~~lf~~l~~~~~~ 168 (199)
T cd04110 113 KVLVGNKNDDPERKVVETEDAYKFAGQ-----MGISLFETSAKENINVEEMFNCITELVLR 168 (199)
T ss_pred EEEEEECcccccccccCHHHHHHHHHH-----cCCEEEEEECCCCcCHHHHHHHHHHHHHH
Confidence 9999999999754332 222221111 12469999999999999999999988764
No 84
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.90 E-value=7.4e-23 Score=129.05 Aligned_cols=118 Identities=21% Similarity=0.331 Sum_probs=93.9
Q ss_pred EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC
Q 032598 12 VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS 91 (137)
Q Consensus 12 ~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 91 (137)
++.+.+.+++|||+|++++..++..+++.+|++++|+|++++.+++.+..|+..+.+. .+++|+++++||+|+....
T Consensus 44 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~~~~- 120 (161)
T cd04124 44 FEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREY--RPEIPCIVVANKIDLDPSV- 120 (161)
T ss_pred ECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCchhH-
Confidence 3345678999999999999999999999999999999999998998888898888653 2579999999999985321
Q ss_pred HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhcC
Q 032598 92 KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSKS 137 (137)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~ 137 (137)
..+.. .+. ...+++++++||++|.|++++|+.+++.+.+++
T Consensus 121 ~~~~~-~~~----~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~ 161 (161)
T cd04124 121 TQKKF-NFA----EKHNLPLYYVSAADGTNVVKLFQDAIKLAVSYK 161 (161)
T ss_pred HHHHH-HHH----HHcCCeEEEEeCCCCCCHHHHHHHHHHHHHhcC
Confidence 11111 111 011356899999999999999999999887764
No 85
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.90 E-value=7e-23 Score=130.07 Aligned_cols=127 Identities=24% Similarity=0.395 Sum_probs=97.2
Q ss_pred CCcccceee--E--EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCC---CCC
Q 032598 2 IPTVGFNMR--K--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPS---LNG 74 (137)
Q Consensus 2 ~pt~~~~~~--~--~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~ 74 (137)
.||+|..+. . ++.+.+.+++|||||+++++.++..+++.+|++++|+|+++.++++.+..|...+..... ..+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 114 (170)
T cd04116 35 FHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPES 114 (170)
T ss_pred CCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCC
Confidence 567775543 2 334568899999999999999999999999999999999999999999888887765432 256
Q ss_pred CcEEEEeeCCCCCCC-CCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHh
Q 032598 75 IPLLVLGNKIDKPEA-LSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 75 ~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
+|+++++||+|+... ....+....... ...+.++++||++|+|++++|.++++.
T Consensus 115 ~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 115 FPFVVLGNKNDIPERQVSTEEAQAWCRE----NGDYPYFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred CcEEEEEECccccccccCHHHHHHHHHH----CCCCeEEEEECCCCCCHHHHHHHHHhh
Confidence 899999999998632 222222222211 112368999999999999999999875
No 86
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.90 E-value=2.7e-22 Score=126.83 Aligned_cols=123 Identities=24% Similarity=0.398 Sum_probs=96.5
Q ss_pred CCcccce--eeEEEeCC--EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFN--MRKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~--~~~~~~~~--~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||.+.. ...+..++ +.+.+|||||++.+...+..+++.+|++++|+|++++.+++.+..|+..+.... ..++|+
T Consensus 33 ~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ 111 (165)
T cd01864 33 GNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYG-ASNVVL 111 (165)
T ss_pred CCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhC-CCCCcE
Confidence 3566633 34455444 789999999999999999999999999999999999999999999999886542 367999
Q ss_pred EEEeeCCCCCCCCCH--H---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHh
Q 032598 78 LVLGNKIDKPEALSK--E---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 78 ivv~nK~D~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
++|+||+|+.+.... . .+.+.++ ...++++||++|.|++++|+++++.
T Consensus 112 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-------~~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 112 LLIGNKCDLEEQREVLFEEACTLAEKNG-------MLAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred EEEEECcccccccccCHHHHHHHHHHcC-------CcEEEEEECCCCCCHHHHHHHHHHh
Confidence 999999999754321 1 2222222 2358999999999999999999875
No 87
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.90 E-value=2.7e-22 Score=134.21 Aligned_cols=129 Identities=16% Similarity=0.247 Sum_probs=100.3
Q ss_pred CCCcccc-eeeEEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCC-------
Q 032598 1 MIPTVGF-NMRKVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKP------- 70 (137)
Q Consensus 1 ~~pt~~~-~~~~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~------- 70 (137)
+.||++. ....+. ++.+.+++|||+|++.+..++..++..+|++++|||+++.++++.+..|++.+....
T Consensus 29 y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~ 108 (247)
T cd04143 29 YTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKT 108 (247)
T ss_pred CCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhccccccc
Confidence 4688873 223333 345889999999999999998889999999999999999999999998888886531
Q ss_pred -CCCCCcEEEEeeCCCCCCCC--CHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 71 -SLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 71 -~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
...++|+++++||+|+.... ...++...++.. ..+.++++||++|+|++++|++|+..+
T Consensus 109 ~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~----~~~~~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 109 KENVKIPMVICGNKADRDFPREVQRDEVEQLVGGD----ENCAYFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred ccCCCCcEEEEEECccchhccccCHHHHHHHHHhc----CCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 23579999999999997532 334444443321 245699999999999999999999865
No 88
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.90 E-value=3.2e-23 Score=130.42 Aligned_cols=122 Identities=18% Similarity=0.280 Sum_probs=89.5
Q ss_pred CcccceeeEEEeCC--EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 3 PTVGFNMRKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 3 pt~~~~~~~~~~~~--~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
|+.+.....+..++ +.+.+|||+|++. ..+++.+|++++|||+++.++++.+..|+..+.......++|++++
T Consensus 31 ~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilv 105 (158)
T cd04103 31 PEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILV 105 (158)
T ss_pred CCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 44443334444444 7799999999975 3467889999999999999999999999998877655567999999
Q ss_pred eeCCCCCC--CCCHH-HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHh
Q 032598 81 GNKIDKPE--ALSKE-DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 81 ~nK~D~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
+||.|+.. .+... +....+.. ....+.|++|||++|+||+++|..+++.
T Consensus 106 gnK~Dl~~~~~~~v~~~~~~~~~~---~~~~~~~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 106 GTQDAISESNPRVIDDARARQLCA---DMKRCSYYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred eeHHHhhhcCCcccCHHHHHHHHH---HhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence 99999853 22221 11122211 1123579999999999999999999865
No 89
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.90 E-value=1.4e-22 Score=127.62 Aligned_cols=121 Identities=21% Similarity=0.428 Sum_probs=96.5
Q ss_pred CCcccceee--EEE----eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCC
Q 032598 2 IPTVGFNMR--KVT----KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGI 75 (137)
Q Consensus 2 ~pt~~~~~~--~~~----~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (137)
.||++.++. .+. ...+++++|||||++++...+..+++.++++++|+|++++++++.+..|+..+... ..++
T Consensus 30 ~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~--~~~~ 107 (162)
T cd04106 30 KKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAE--CGDI 107 (162)
T ss_pred CCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCC
Confidence 577775553 222 34688999999999999999999999999999999999999999998998887543 3579
Q ss_pred cEEEEeeCCCCCCCCCH--HH---HHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHh
Q 032598 76 PLLVLGNKIDKPEALSK--ED---LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 76 p~ivv~nK~D~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
|+++++||+|+...... ++ +...+ +++++++||++|.|++++|++|...
T Consensus 108 p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~--------~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 108 PMVLVQTKIDLLDQAVITNEEAEALAKRL--------QLPLFRTSVKDDFNVTELFEYLAEK 161 (162)
T ss_pred CEEEEEEChhcccccCCCHHHHHHHHHHc--------CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 99999999998654332 22 23322 2369999999999999999999764
No 90
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.90 E-value=1.1e-22 Score=129.60 Aligned_cols=125 Identities=18% Similarity=0.272 Sum_probs=96.0
Q ss_pred CCcccceee-EE--EeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMR-KV--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~-~~--~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ 77 (137)
.||++.++. .+ +++.+.+.+|||||++.+..++..+++.+|++++|+|+++.++++.+. .|+..+... .+++|+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~--~~~~pi 105 (174)
T smart00174 28 VPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHF--CPNTPI 105 (174)
T ss_pred CCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCE
Confidence 466664443 23 334578999999999999999999999999999999999999999886 588777653 257999
Q ss_pred EEEeeCCCCCCCCCH-----------------HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALSK-----------------EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|+...... ..+...++ ...++++||++|+|++++|+.+++.+.+
T Consensus 106 ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------~~~~~e~Sa~~~~~v~~lf~~l~~~~~~ 173 (174)
T smart00174 106 ILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIG-------AVKYLECSALTQEGVREVFEEAIRAALN 173 (174)
T ss_pred EEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcC-------CcEEEEecCCCCCCHHHHHHHHHHHhcC
Confidence 999999998653211 01222222 1268999999999999999999988753
No 91
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.90 E-value=1.8e-22 Score=128.32 Aligned_cols=129 Identities=27% Similarity=0.467 Sum_probs=99.6
Q ss_pred CCcccceee--EEE--eCCEEEEEEecCCccccH-HhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 2 IPTVGFNMR--KVT--KGNVTIKLWDLGGQPRFR-SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 2 ~pt~~~~~~--~~~--~~~~~~~~~Dt~g~~~~~-~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
.||++..+. .+. ...+.+.+|||+|+++++ .++..+++++|++++|+|++++.+++.+..|+..+.......++|
T Consensus 32 ~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p 111 (170)
T cd04115 32 EATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVP 111 (170)
T ss_pred ccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCC
Confidence 467764443 333 344889999999999887 578889999999999999999999999999998887665456899
Q ss_pred EEEEeeCCCCCCCCCH-HHHHHHhCCCCCCCCceeEEEeeccc---CCChHHHHHHHHHhhh
Q 032598 77 LLVLGNKIDKPEALSK-EDLMEQMGLKSITDREVCCYMISCKN---STNIDTVIDWLVKHSK 134 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~v~~~~~~i~~~~~ 134 (137)
+++++||+|+...... ......+.. ..+++++++||++ ++|++++|.++++.++
T Consensus 112 ~iiv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~~ 169 (170)
T cd04115 112 RILVGNKCDLREQIQVPTDLAQRFAD----AHSMPLFETSAKDPSENDHVEAIFMTLAHKLK 169 (170)
T ss_pred EEEEEECccchhhcCCCHHHHHHHHH----HcCCcEEEEeccCCcCCCCHHHHHHHHHHHhh
Confidence 9999999998755432 222222221 1135699999999 8999999999998764
No 92
>PLN03110 Rab GTPase; Provisional
Probab=99.90 E-value=1.7e-22 Score=132.97 Aligned_cols=130 Identities=19% Similarity=0.291 Sum_probs=101.8
Q ss_pred CCCcccceee--EEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMR--KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~--~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
+.||+|.++. .+. ...+.+.+|||+|++++..++..+++.++++++|+|+++..+++.+..|+..+.... ..++|
T Consensus 41 ~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~p 119 (216)
T PLN03110 41 SKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHA-DSNIV 119 (216)
T ss_pred CCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhC-CCCCe
Confidence 3578886553 344 345799999999999999999999999999999999999999999999988876542 25799
Q ss_pred EEEEeeCCCCCCCCCH-HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALSK-EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++++||+|+...... .+....+.. ...++++++||++|+|++++|+++++.+.+
T Consensus 120 iiiv~nK~Dl~~~~~~~~~~~~~l~~----~~~~~~~e~SA~~g~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 120 IMMAGNKSDLNHLRSVAEEDGQALAE----KEGLSFLETSALEATNVEKAFQTILLEIYH 175 (216)
T ss_pred EEEEEEChhcccccCCCHHHHHHHHH----HcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999998654432 222222221 124579999999999999999999987743
No 93
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.89 E-value=9.2e-24 Score=128.81 Aligned_cols=114 Identities=25% Similarity=0.374 Sum_probs=95.5
Q ss_pred EeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH
Q 032598 13 TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK 92 (137)
Q Consensus 13 ~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 92 (137)
.+...++.+|||+||++|-++-+.|+++++|.++|||++|.+||+.+..|..++.+- ....+.+++|+||+|+.+.+.+
T Consensus 58 ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~m-lGnei~l~IVGNKiDLEeeR~V 136 (218)
T KOG0088|consen 58 EDCRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTM-LGNEIELLIVGNKIDLEEERQV 136 (218)
T ss_pred ccceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHH-hCCeeEEEEecCcccHHHhhhh
Confidence 345688999999999999999999999999999999999999999999999888653 2356889999999999876554
Q ss_pred H-----HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 93 E-----DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 93 ~-----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
. ...+..+. .++++||+.+.||+++|+.+...+.+
T Consensus 137 t~qeAe~YAesvGA--------~y~eTSAk~N~Gi~elFe~Lt~~MiE 176 (218)
T KOG0088|consen 137 TRQEAEAYAESVGA--------LYMETSAKDNVGISELFESLTAKMIE 176 (218)
T ss_pred hHHHHHHHHHhhch--------hheecccccccCHHHHHHHHHHHHHH
Confidence 2 22333333 49999999999999999999877654
No 94
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.89 E-value=2.4e-22 Score=129.66 Aligned_cols=130 Identities=20% Similarity=0.325 Sum_probs=99.8
Q ss_pred CCCccccee--eEEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNM--RKVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~--~~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
+.||+|..+ ..+. .+.+.+.+|||+|++.+...+..+++++|++++|||++++.+++.+..|+..+..... ..+|
T Consensus 29 ~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~-~~~~ 107 (188)
T cd04125 29 TKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYAR-ENVI 107 (188)
T ss_pred CCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCe
Confidence 357887443 2333 3457889999999999999999999999999999999999999999999888875432 4589
Q ss_pred EEEEeeCCCCCCCCCH-HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALSK-EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++++||+|+.+.... ......+.. ..++.++++||++|.|++++|.++++.+.+
T Consensus 108 ~ivv~nK~Dl~~~~~v~~~~~~~~~~----~~~~~~~evSa~~~~~i~~~f~~l~~~~~~ 163 (188)
T cd04125 108 KVIVANKSDLVNNKVVDSNIAKSFCD----SLNIPFFETSAKQSINVEEAFILLVKLIIK 163 (188)
T ss_pred EEEEEECCCCcccccCCHHHHHHHHH----HcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999998754322 111112211 113369999999999999999999988764
No 95
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.89 E-value=3.6e-22 Score=126.67 Aligned_cols=130 Identities=22% Similarity=0.277 Sum_probs=99.2
Q ss_pred CCCcccceeeE-E--EeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 1 MIPTVGFNMRK-V--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 1 ~~pt~~~~~~~-~--~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
+.||++..+.. + +...+.+++|||||++++..+++.+++.++++++|+|.+++++++....|...+.......+.|+
T Consensus 30 ~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~pi 109 (168)
T cd04177 30 YDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPM 109 (168)
T ss_pred cCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCE
Confidence 35777754432 3 33457899999999999999999999999999999999999999999888888876544468999
Q ss_pred EEEeeCCCCCCCCCHH-HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 78 LVLGNKIDKPEALSKE-DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 78 ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
++++||+|+....... +....+.. ......++++||++|+|++++|++++..+
T Consensus 110 iiv~nK~D~~~~~~~~~~~~~~~~~---~~~~~~~~~~SA~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 110 VLVGNKADLEDDRQVSREDGVSLSQ---QWGNVPFYETSARKRTNVDEVFIDLVRQI 163 (168)
T ss_pred EEEEEChhccccCccCHHHHHHHHH---HcCCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 9999999986544321 11111110 01124699999999999999999999765
No 96
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.89 E-value=9.3e-22 Score=124.29 Aligned_cols=126 Identities=19% Similarity=0.320 Sum_probs=98.0
Q ss_pred CCcccceee--EEEeC--CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMR--KVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~--~~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++.++. .+..+ .+.+++||+||++++..++..+++.++++++|+|+++..+++.+..|+..+.... ..++|+
T Consensus 33 ~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi 111 (165)
T cd01868 33 KSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHA-DSNIVI 111 (165)
T ss_pred CCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCeE
Confidence 577875443 34433 3789999999999999999999999999999999999999999999988886653 246899
Q ss_pred EEEeeCCCCCCCCC--HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 78 LVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 78 ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
++++||+|+..... ..+....... .++.++++||++|+|++++|+++++.+
T Consensus 112 ~vv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 112 MLVGNKSDLRHLRAVPTEEAKAFAEK-----NGLSFIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred EEEEECccccccccCCHHHHHHHHHH-----cCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 99999999875432 2222222211 235699999999999999999998764
No 97
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.89 E-value=7.5e-22 Score=124.54 Aligned_cols=126 Identities=16% Similarity=0.274 Sum_probs=97.3
Q ss_pred CCcccceeeE--EE---eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 2 IPTVGFNMRK--VT---KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 2 ~pt~~~~~~~--~~---~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
.||+|..+.. +. +..+++.+|||||++.+..++..+++.+|++++|+|+++..++..+..|+..+.... .++|
T Consensus 32 ~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p 109 (164)
T cd04101 32 LMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS--KHMP 109 (164)
T ss_pred CCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCC
Confidence 5677755432 22 345899999999999999999999999999999999999999988888988876542 5699
Q ss_pred EEEEeeCCCCCCCCCHHH-HHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 77 LLVLGNKIDKPEALSKED-LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
+++++||+|+.+...... ....+.. ..++.++++||++|.|++++|+.+++.+
T Consensus 110 ~ilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 110 GVLVGNKMDLADKAEVTDAQAQAFAQ----ANQLKFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred EEEEEECcccccccCCCHHHHHHHHH----HcCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence 999999999965533221 1112211 1134689999999999999999999875
No 98
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.89 E-value=4.4e-22 Score=128.22 Aligned_cols=126 Identities=17% Similarity=0.271 Sum_probs=96.6
Q ss_pred CCCcccceee-EEE---eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCC
Q 032598 1 MIPTVGFNMR-KVT---KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGI 75 (137)
Q Consensus 1 ~~pt~~~~~~-~~~---~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~ 75 (137)
+.||++.++. .+. .+.+.+.+|||||++++..++..+++++|++++|+|+++..+++.+. .|+..+... .+++
T Consensus 29 ~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~ 106 (187)
T cd04132 29 YVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHF--CPGT 106 (187)
T ss_pred CCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCC
Confidence 3577775543 233 33578999999999999999999999999999999999999999886 477666543 2579
Q ss_pred cEEEEeeCCCCCCCC------CHH---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 76 PLLVLGNKIDKPEAL------SKE---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 76 p~ivv~nK~D~~~~~------~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
|+++++||.|+.... ... ++...++. ..++++||++|+|++++|..+++.+.+
T Consensus 107 piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~-------~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 168 (187)
T cd04132 107 PIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGA-------FAYLECSAKTMENVEEVFDTAIEEALK 168 (187)
T ss_pred CEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCC-------cEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence 999999999986532 111 22222221 158999999999999999999988764
No 99
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.89 E-value=7.8e-22 Score=125.16 Aligned_cols=128 Identities=20% Similarity=0.274 Sum_probs=99.2
Q ss_pred CCcccceee--EE--EeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMR--KV--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~--~~--~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||+|.... .+ ..+...+.+|||||++++......+++.+|++++|+|++++.+++.+..|+..+.... .+++|+
T Consensus 34 ~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pv 112 (168)
T cd01866 34 DLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS-NSNMTI 112 (168)
T ss_pred CCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCcE
Confidence 356664432 23 3345789999999999999999999999999999999999999999999998886643 367999
Q ss_pred EEEeeCCCCCCCCC--HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||.|+.+... ..+....... .++.++++||++++|++++|.++++.+.+
T Consensus 113 ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~e~Sa~~~~~i~~~~~~~~~~~~~ 167 (168)
T cd01866 113 MLIGNKCDLESRREVSYEEGEAFAKE-----HGLIFMETSAKTASNVEEAFINTAKEIYE 167 (168)
T ss_pred EEEEECcccccccCCCHHHHHHHHHH-----cCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 99999999974332 2222222211 23469999999999999999999988754
No 100
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.89 E-value=2.7e-22 Score=126.25 Aligned_cols=126 Identities=19% Similarity=0.261 Sum_probs=96.4
Q ss_pred CCcccceee--EEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMR--KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~--~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+. .+. +....+++|||||++.+...+..+++.+|++++|+|+++.+++..+..|+..+.... .+++|+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~i 108 (161)
T cd04113 30 QHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALA-SPNIVV 108 (161)
T ss_pred CCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeE
Confidence 355553332 233 344789999999999999999999999999999999999999999999988775432 367999
Q ss_pred EEEeeCCCCCCCCC--HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 78 LVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 78 ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
++++||+|+..... ..+.....+. ..+.++++||+++.|++++|+++++.+
T Consensus 109 ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~~~~~~~~~~ 161 (161)
T cd04113 109 ILVGNKSDLADQREVTFLEASRFAQE-----NGLLFLETSALTGENVEEAFLKCARSI 161 (161)
T ss_pred EEEEEchhcchhccCCHHHHHHHHHH-----cCCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 99999999965432 2222222221 125699999999999999999998753
No 101
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.89 E-value=8.2e-22 Score=127.52 Aligned_cols=131 Identities=21% Similarity=0.281 Sum_probs=107.4
Q ss_pred CCCcccceeeE---EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 1 MIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 1 ~~pt~~~~~~~---~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
|.||++..+.+ ++++...+.++||+|++.+..+...+++.++|+++||++++..||+.+..+.+.+........+|+
T Consensus 32 y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~Pi 111 (196)
T KOG0395|consen 32 YDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPI 111 (196)
T ss_pred cCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCE
Confidence 57999865543 666779999999999999999999999999999999999999999999999999966656567999
Q ss_pred EEEeeCCCCCCCCCHHHH-HHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALSKEDL-MEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++|+||+|+...+.+..- ...+ .....+.|+++||+.+.+++++|..+++.+..
T Consensus 112 vlVGNK~Dl~~~R~V~~eeg~~l----a~~~~~~f~E~Sak~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 112 ILVGNKCDLERERQVSEEEGKAL----ARSWGCAFIETSAKLNYNVDEVFYELVREIRL 166 (196)
T ss_pred EEEEEcccchhccccCHHHHHHH----HHhcCCcEEEeeccCCcCHHHHHHHHHHHHHh
Confidence 999999999875443211 1122 11224459999999999999999999998764
No 102
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.88 E-value=1.2e-21 Score=126.90 Aligned_cols=128 Identities=20% Similarity=0.307 Sum_probs=97.3
Q ss_pred CCCccccee--eEEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNM--RKVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~--~~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
+.||+|..+ ..+. +..+.+.+|||+|++++..++..+++.+|++++|+|+++..+++.+..|+..+... ..++|
T Consensus 30 ~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~--~~~~p 107 (193)
T cd04118 30 YQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNL--EEHCK 107 (193)
T ss_pred cccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhc--CCCCC
Confidence 457777444 2343 34477889999999999999999999999999999999999999888888887654 24799
Q ss_pred EEEEeeCCCCCCCCC------HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALS------KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++|+||+|+..... ..+... +. ...++.++++||++|+|++++|+++++.+.+
T Consensus 108 iilv~nK~Dl~~~~~~~~~v~~~~~~~-~~----~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~ 167 (193)
T cd04118 108 IYLCGTKSDLIEQDRSLRQVDFHDVQD-FA----DEIKAQHFETSSKTGQNVDELFQKVAEDFVS 167 (193)
T ss_pred EEEEEEcccccccccccCccCHHHHHH-HH----HHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 999999999854321 111111 11 0113468999999999999999999988754
No 103
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.88 E-value=2.1e-21 Score=123.41 Aligned_cols=124 Identities=16% Similarity=0.176 Sum_probs=96.5
Q ss_pred CCCcccceee--EEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMR--KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~--~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
+.||++..+. .+. ++.+.+.+||++|++.+..++..+++.+|++++|+|++++.+++.+..|+..+... .++|
T Consensus 34 ~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~---~~~p 110 (169)
T cd01892 34 YSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFML---GEIP 110 (169)
T ss_pred CCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccC---CCCe
Confidence 4688885443 343 44478999999999999999999999999999999999988888887777655322 4799
Q ss_pred EEEEeeCCCCCCCCC-----HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 77 LLVLGNKIDKPEALS-----KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+++++||+|+.+... ..++...++.. .++++||++|+|++++|+.+++.+.
T Consensus 111 ~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-------~~~~~Sa~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 111 CLFVAAKADLDEQQQRYEVQPDEFCRKLGLP-------PPLHFSSKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred EEEEEEcccccccccccccCHHHHHHHcCCC-------CCEEEEeccCccHHHHHHHHHHHhh
Confidence 999999999964432 23444444321 2689999999999999999998775
No 104
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.88 E-value=2.6e-22 Score=120.33 Aligned_cols=133 Identities=29% Similarity=0.530 Sum_probs=120.5
Q ss_pred CCcccceeeEEEeCC-EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 2 IPTVGFNMRKVTKGN-VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~-~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
.||-|||..++.+++ +++++||.+|+...+..|..|+...|++|+|+|++|...++++...+-+++........|+.++
T Consensus 46 tpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIf 125 (185)
T KOG0074|consen 46 TPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIF 125 (185)
T ss_pred cccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeeh
Confidence 589999999998766 9999999999999999999999999999999999998889988888888888777789999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+||.|+...-..+++...++......+.|++.+|||.+++|+.+..+|+.....
T Consensus 126 ankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg~~wv~sn~~ 179 (185)
T KOG0074|consen 126 ANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDGSDWVQSNPE 179 (185)
T ss_pred hhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccCcchhhhcCCC
Confidence 999999887778888888887777788999999999999999999999886554
No 105
>PLN03108 Rab family protein; Provisional
Probab=99.88 E-value=1.9e-21 Score=127.51 Aligned_cols=128 Identities=19% Similarity=0.286 Sum_probs=98.8
Q ss_pred CCcccceee--E--EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMR--K--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~--~--~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++.++. . +....+.+++|||+|++.+..++..+++.+|++++|+|+++..+++.+..|+..+.... ..++|+
T Consensus 36 ~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~-~~~~pi 114 (210)
T PLN03108 36 DLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA-NANMTI 114 (210)
T ss_pred CCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhc-CCCCcE
Confidence 467775543 2 33445789999999999999999999999999999999999999999888888775442 257999
Q ss_pred EEEeeCCCCCCCCC--HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|+.+... ..+.....+ ..++.++++||++++|++++|.++++.+.+
T Consensus 115 iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~~v~e~f~~l~~~~~~ 169 (210)
T PLN03108 115 MLIGNKCDLAHRRAVSTEEGEQFAK-----EHGLIFMEASAKTAQNVEEAFIKTAAKIYK 169 (210)
T ss_pred EEEEECccCccccCCCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999976432 222222221 113469999999999999999999987753
No 106
>PLN03118 Rab family protein; Provisional
Probab=99.88 E-value=2.8e-21 Score=126.85 Aligned_cols=129 Identities=20% Similarity=0.346 Sum_probs=95.7
Q ss_pred CCcccceee--EEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHH-HHHHHhcCCCCCCCc
Q 032598 2 IPTVGFNMR--KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS-ELHDLLSKPSLNGIP 76 (137)
Q Consensus 2 ~pt~~~~~~--~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p 76 (137)
.||+|..+. .+. .+.+.+.+|||||++++..++..+++.+|++++|+|+++.++++.+.. |...+.......+.|
T Consensus 43 ~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~ 122 (211)
T PLN03118 43 APTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCV 122 (211)
T ss_pred CCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 577775443 333 345789999999999999999999999999999999999999988875 444443332335689
Q ss_pred EEEEeeCCCCCCCCCH--HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALSK--EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++++||+|+...... ........ ..++.++++||++|+|++++|++|.+.+.+
T Consensus 123 ~ilv~NK~Dl~~~~~i~~~~~~~~~~-----~~~~~~~e~SAk~~~~v~~l~~~l~~~~~~ 178 (211)
T PLN03118 123 KMLVGNKVDRESERDVSREEGMALAK-----EHGCLFLECSAKTRENVEQCFEELALKIME 178 (211)
T ss_pred EEEEEECccccccCccCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 9999999998654332 21111111 123469999999999999999999987753
No 107
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.88 E-value=1.8e-21 Score=126.62 Aligned_cols=129 Identities=21% Similarity=0.281 Sum_probs=97.7
Q ss_pred CCccc-ceeeEEEeCC--EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 2 IPTVG-FNMRKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 2 ~pt~~-~~~~~~~~~~--~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.||++ .....+..++ +.+++||+||+..+..++..+++.+|++++|+|+++..+++.+..|+..+.......++|++
T Consensus 29 ~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii 108 (198)
T cd04147 29 RRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIV 108 (198)
T ss_pred CCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 35554 3333344444 78999999999999999999999999999999999999999998888888776555679999
Q ss_pred EEeeCCCCCCC-CCH--HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 79 VLGNKIDKPEA-LSK--EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 79 vv~nK~D~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+++||+|+... ... ......... ..+..++++||++|.|++++|+++++.+.
T Consensus 109 lv~NK~Dl~~~~~~v~~~~~~~~~~~----~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 109 VVGNKADSLEEERQVPAKDALSTVEL----DWNCGFVETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred EEEEccccccccccccHHHHHHHHHh----hcCCcEEEecCCCCCCHHHHHHHHHHHhh
Confidence 99999998653 211 112211110 11235899999999999999999998764
No 108
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.88 E-value=2.6e-21 Score=121.77 Aligned_cols=126 Identities=25% Similarity=0.421 Sum_probs=98.4
Q ss_pred CCcccceeeE--EE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMRK--VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~~--~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++.++.. +. ...+.+.+|||||++.+...+..+++.+|++++|+|+++..+++....|+..+.......+.|+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~ 109 (161)
T cd01863 30 AATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVK 109 (161)
T ss_pred CCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcE
Confidence 4677754432 33 3458899999999999999999999999999999999999999998889888877655678999
Q ss_pred EEEeeCCCCCCCC-CHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHh
Q 032598 78 LVLGNKIDKPEAL-SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 78 ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
++++||+|+.... ...+....... .+++++++||++|+|++++++++.+.
T Consensus 110 ~iv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 110 MLVGNKIDKENREVTREEGLKFARK-----HNMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred EEEEECCcccccccCHHHHHHHHHH-----cCCEEEEEecCCCCCHHHHHHHHHHh
Confidence 9999999997332 22222221111 24569999999999999999999875
No 109
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.87 E-value=1.1e-21 Score=123.52 Aligned_cols=125 Identities=28% Similarity=0.532 Sum_probs=101.9
Q ss_pred CCCcccceeeE--EE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMRK--VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~~--~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
+.||+|..... +. ...+.+.+||++|++++..+...+++++|++++|||.++..+++.+..|+..+..... .++|
T Consensus 28 ~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~-~~~~ 106 (162)
T PF00071_consen 28 YIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKP-EDIP 106 (162)
T ss_dssp SETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHST-TTSE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 45788755543 33 3458899999999999999999999999999999999999999999999999877643 4689
Q ss_pred EEEEeeCCCCCCCCC--HH---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 77 LLVLGNKIDKPEALS--KE---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+++++||.|+..... .. ++...++ ..++++||+++.|+.++|..+++.+.
T Consensus 107 iivvg~K~D~~~~~~v~~~~~~~~~~~~~--------~~~~e~Sa~~~~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 107 IIVVGNKSDLSDEREVSVEEAQEFAKELG--------VPYFEVSAKNGENVKEIFQELIRKIL 161 (162)
T ss_dssp EEEEEETTTGGGGSSSCHHHHHHHHHHTT--------SEEEEEBTTTTTTHHHHHHHHHHHHH
T ss_pred ceeeeccccccccccchhhHHHHHHHHhC--------CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 999999999976332 22 2333333 46999999999999999999998875
No 110
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.87 E-value=6.1e-21 Score=120.20 Aligned_cols=128 Identities=22% Similarity=0.406 Sum_probs=99.2
Q ss_pred CCcccceee--EEEeC--CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMR--KVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~--~~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+. .+..+ .+.+.+||+||++.+...+..+++.+|++++|+|++++.+++.+..|+..+..... .++|+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~-~~~pi 108 (164)
T smart00175 30 KSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYAD-PNVVI 108 (164)
T ss_pred CCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCeE
Confidence 356664433 34443 37899999999999999999999999999999999999999998889888876543 58999
Q ss_pred EEEeeCCCCCCCC--CHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|+.... .......... ..++.++++||++|.|++++++++.+.+.+
T Consensus 109 vvv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~~i~~l~~~i~~~~~~ 163 (164)
T smart00175 109 MLVGNKSDLEDQRQVSREEAEAFAE-----EHGLPFFETSAKTNTNVEEAFEELAREILK 163 (164)
T ss_pred EEEEEchhcccccCCCHHHHHHHHH-----HcCCeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 9999999987633 2222222111 113469999999999999999999998764
No 111
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.87 E-value=1.1e-21 Score=127.62 Aligned_cols=132 Identities=17% Similarity=0.167 Sum_probs=93.3
Q ss_pred CCCcccceee--EEE--eCCEEEEEEecCCccccH--------HhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhc
Q 032598 1 MIPTVGFNMR--KVT--KGNVTIKLWDLGGQPRFR--------SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLS 68 (137)
Q Consensus 1 ~~pt~~~~~~--~~~--~~~~~~~~~Dt~g~~~~~--------~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~ 68 (137)
+.||++.++. .+. +..+.+.+|||||...+. ......++.+|++++|||++++++++.+..|...+..
T Consensus 29 ~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~ 108 (198)
T cd04142 29 YIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILE 108 (198)
T ss_pred cCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 3577774432 333 334789999999975432 1133457899999999999999999999888888776
Q ss_pred CC--CCCCCcEEEEeeCCCCCCCCCH-HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 69 KP--SLNGIPLLVLGNKIDKPEALSK-EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 69 ~~--~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
.. ...++|+++++||+|+...+.. .+....+.. ...++.++++||++|.|++++|+.+++.+..
T Consensus 109 ~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~e~Sak~g~~v~~lf~~i~~~~~~ 175 (198)
T cd04142 109 TRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVR---KSWKCGYLECSAKYNWHILLLFKELLISATT 175 (198)
T ss_pred hcccCCCCCCEEEEEECccccccccccHHHHHHHHH---HhcCCcEEEecCCCCCCHHHHHHHHHHHhhc
Confidence 43 2467999999999999654322 111221110 0124569999999999999999999987653
No 112
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.87 E-value=7.3e-21 Score=119.63 Aligned_cols=126 Identities=22% Similarity=0.354 Sum_probs=96.1
Q ss_pred CCccccee--eEEEeC--CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNM--RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~--~~~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||.+..+ ..+..+ .+++++|||||++++..++..+++.++++++|+|++++++++.+..|+..+..... .+.|+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~i 108 (161)
T cd01861 30 QATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERG-NDVII 108 (161)
T ss_pred CCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEE
Confidence 45666433 234333 36799999999999999999999999999999999999999999999988866432 36999
Q ss_pred EEEeeCCCCCCCCC--HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 78 LVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 78 ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
++++||+|+..... ..+.....+. .++.++++||++++|++++++++++.+
T Consensus 109 ilv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~~l~~~i~~~l 161 (161)
T cd01861 109 VLVGNKTDLSDKRQVSTEEGEKKAKE-----LNAMFIETSAKAGHNVKELFRKIASAL 161 (161)
T ss_pred EEEEEChhccccCccCHHHHHHHHHH-----hCCEEEEEeCCCCCCHHHHHHHHHHhC
Confidence 99999999954322 2222222111 135699999999999999999998753
No 113
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.87 E-value=3e-21 Score=121.62 Aligned_cols=126 Identities=25% Similarity=0.386 Sum_probs=98.1
Q ss_pred CCccccee--eEEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNM--RKVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~--~~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||.|..+ ..+. .....+.+||+||++++...+..+++.+|++++|+|++++++++....|+..+..... .+.|+
T Consensus 31 ~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~i 109 (163)
T cd01860 31 ESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNAS-PNIII 109 (163)
T ss_pred CCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCeE
Confidence 46777433 2333 3457899999999999999999999999999999999999999999999888876543 67999
Q ss_pred EEEeeCCCCCCCC--CHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 78 LVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 78 ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
++++||+|+.... ............ .+.++++||++|.|++++|+++++.+
T Consensus 110 ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 110 ALVGNKADLESKRQVSTEEAQEYADEN-----GLLFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred EEEEECccccccCcCCHHHHHHHHHHc-----CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 9999999987432 222222222211 24699999999999999999998865
No 114
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.87 E-value=7.3e-21 Score=120.77 Aligned_cols=130 Identities=25% Similarity=0.406 Sum_probs=97.5
Q ss_pred Ccccceee--EEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCC---CCCC
Q 032598 3 PTVGFNMR--KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPS---LNGI 75 (137)
Q Consensus 3 pt~~~~~~--~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~ 75 (137)
||++..+. .+. ...+.+++||+||++.+..++..+++.+|++++|+|++++.+++....|...+..... ..++
T Consensus 31 ~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (172)
T cd01862 31 ATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENF 110 (172)
T ss_pred CccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCc
Confidence 56664432 233 3457788999999999999999999999999999999998888888788776655432 3479
Q ss_pred cEEEEeeCCCCCCCC--CHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 76 PLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 76 p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
|+++++||+|+.... ........... .....++++||++|.|++++|+++.+.+.++
T Consensus 111 p~ilv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~ 169 (172)
T cd01862 111 PFVVLGNKIDLEEKRQVSTKKAQQWCQS----NGNIPYFETSAKEAINVEQAFETIARKALEQ 169 (172)
T ss_pred eEEEEEECcccccccccCHHHHHHHHHH----cCCceEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 999999999997422 23332222221 1124699999999999999999999887653
No 115
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=2.2e-21 Score=116.57 Aligned_cols=125 Identities=20% Similarity=0.307 Sum_probs=100.1
Q ss_pred cccceee----EEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEE
Q 032598 4 TVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLV 79 (137)
Q Consensus 4 t~~~~~~----~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 79 (137)
|+|..+. .+.+.++++++|||+|++++++..+.|++++.+.++|+|++...++..+..|+....... .++..+++
T Consensus 43 tigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar~lt-npnt~i~l 121 (215)
T KOG0097|consen 43 TIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIFL 121 (215)
T ss_pred ccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccC-CCceEEEE
Confidence 5664443 356778999999999999999999999999999999999999888998999998886553 37788899
Q ss_pred EeeCCCCCCCCCHH-HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 80 LGNKIDKPEALSKE-DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 80 v~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
++||.|+...+.+. +-...+.. ..+..|+++||++|+|+++.|-..+..+
T Consensus 122 ignkadle~qrdv~yeeak~fae----engl~fle~saktg~nvedafle~akki 172 (215)
T KOG0097|consen 122 IGNKADLESQRDVTYEEAKEFAE----ENGLMFLEASAKTGQNVEDAFLETAKKI 172 (215)
T ss_pred ecchhhhhhcccCcHHHHHHHHh----hcCeEEEEecccccCcHHHHHHHHHHHH
Confidence 99999998776542 22222221 2345699999999999999998777655
No 116
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.87 E-value=6.6e-21 Score=119.98 Aligned_cols=115 Identities=23% Similarity=0.382 Sum_probs=94.3
Q ss_pred EeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--
Q 032598 13 TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL-- 90 (137)
Q Consensus 13 ~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-- 90 (137)
+.+.+.+.+|||||+..+...+..+++.++++++|+|.+++.++.....|...+.......++|+++++||+|+.+..
T Consensus 44 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~ 123 (164)
T cd04139 44 DGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQV 123 (164)
T ss_pred CCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccccccc
Confidence 345688999999999999999999999999999999999998998888888888776445679999999999997622
Q ss_pred CHH---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 91 SKE---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 91 ~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
... .....++ .+++++||++|+|++++|+++.+.+.+
T Consensus 124 ~~~~~~~~~~~~~--------~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 163 (164)
T cd04139 124 SSEEAANLARQWG--------VPYVETSAKTRQNVEKAFYDLVREIRQ 163 (164)
T ss_pred CHHHHHHHHHHhC--------CeEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 222 2222222 359999999999999999999988754
No 117
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.87 E-value=3.1e-21 Score=122.00 Aligned_cols=115 Identities=18% Similarity=0.241 Sum_probs=88.6
Q ss_pred EEeCCEEEEEEecCCccc-cHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCC-CCCCcEEEEeeCCCCCCC
Q 032598 12 VTKGNVTIKLWDLGGQPR-FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPS-LNGIPLLVLGNKIDKPEA 89 (137)
Q Consensus 12 ~~~~~~~~~~~Dt~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~ 89 (137)
++++.+.+++|||||++. .......+++.+|++++|+|+++..+++.+..|...+..... ..++|+++++||+|+...
T Consensus 42 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 121 (165)
T cd04146 42 IDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHY 121 (165)
T ss_pred ECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHh
Confidence 344557899999999985 345567789999999999999999999998888877765432 357999999999998644
Q ss_pred CCH--H---HHHHHhCCCCCCCCceeEEEeecccCC-ChHHHHHHHHHhhh
Q 032598 90 LSK--E---DLMEQMGLKSITDREVCCYMISCKNST-NIDTVIDWLVKHSK 134 (137)
Q Consensus 90 ~~~--~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~v~~~~~~i~~~~~ 134 (137)
... . .+...+ ++.++++||++|. |++++|.++++.+.
T Consensus 122 ~~v~~~~~~~~~~~~--------~~~~~e~Sa~~~~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 122 RQVSTEEGEKLASEL--------GCLFFEVSAAEDYDGVHSVFHELCREVR 164 (165)
T ss_pred CccCHHHHHHHHHHc--------CCEEEEeCCCCCchhHHHHHHHHHHHHh
Confidence 322 1 222222 2369999999994 99999999998764
No 118
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.87 E-value=3.4e-21 Score=122.75 Aligned_cols=131 Identities=17% Similarity=0.231 Sum_probs=93.7
Q ss_pred CCCcccceee-EEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMR-KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~-~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p 76 (137)
+.||++..+. .+. .+.+++.+|||+|++.+...+..+++++|++++|+|+++.++++.+. .|...+.+. ..++|
T Consensus 30 ~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~--~~~~p 107 (175)
T cd01870 30 YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVP 107 (175)
T ss_pred CCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCC
Confidence 4677775543 333 34578999999999999988888899999999999999998888875 466666543 25789
Q ss_pred EEEEeeCCCCCCCCCHHHHHHHhCCCCC----------CCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 77 LLVLGNKIDKPEALSKEDLMEQMGLKSI----------TDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
+++++||+|+.......+.......... ......+++|||++|.|++++|+++++.+
T Consensus 108 iilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 108 IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred EEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence 9999999998643221111110000000 01134699999999999999999999765
No 119
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.86 E-value=2.1e-20 Score=123.48 Aligned_cols=127 Identities=16% Similarity=0.109 Sum_probs=93.1
Q ss_pred CCccc--ceeeEE--EeCCEEEEEEecCCccccHHhHHHHhc-cCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 2 IPTVG--FNMRKV--TKGNVTIKLWDLGGQPRFRSMWERYCR-AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 2 ~pt~~--~~~~~~--~~~~~~~~~~Dt~g~~~~~~~~~~~~~-~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
.||++ +....+ +.+...+.+|||+|++ ......+++ .+|++++|||+++..+++....|+..+.......++|
T Consensus 31 ~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~p 108 (221)
T cd04148 31 DASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRP 108 (221)
T ss_pred CCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 45554 333333 3456889999999998 333455667 8999999999999999998888888887654446799
Q ss_pred EEEEeeCCCCCCCCCHH-HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 77 LLVLGNKIDKPEALSKE-DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+++|+||+|+....... +....+.. ..++.++++||++|.|++++|+++++.+.
T Consensus 109 iilV~NK~Dl~~~~~v~~~~~~~~a~----~~~~~~~e~SA~~~~gv~~l~~~l~~~~~ 163 (221)
T cd04148 109 IILVGNKSDLARSREVSVQEGRACAV----VFDCKFIETSAGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred EEEEEEChhccccceecHHHHHHHHH----HcCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 99999999996544321 11112211 12346999999999999999999998885
No 120
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.86 E-value=7.9e-21 Score=120.98 Aligned_cols=130 Identities=17% Similarity=0.211 Sum_probs=92.3
Q ss_pred CCcccceee-EEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMR-KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~-~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+. .+. ...+.+.+|||||++.+...+..+++.+|++++|+|.++..+++.+. .|...+... ..++|+
T Consensus 30 ~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~--~~~~pi 107 (174)
T cd04135 30 VPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY--APNVPY 107 (174)
T ss_pred CCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCE
Confidence 566653332 233 33467899999999999999999999999999999999999998876 466666543 468999
Q ss_pred EEEeeCCCCCCCCCHHHHHHHhCCCCC----------CCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 78 LVLGNKIDKPEALSKEDLMEQMGLKSI----------TDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 78 ivv~nK~D~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
++++||+|+.+..........+..... ......++++||++|.|++++|+.+++.+
T Consensus 108 ivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 108 LLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred EEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence 999999998643221111111100000 01123589999999999999999999875
No 121
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.86 E-value=6.7e-21 Score=121.41 Aligned_cols=113 Identities=12% Similarity=0.152 Sum_probs=85.2
Q ss_pred eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-
Q 032598 14 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPLLVLGNKIDKPEALS- 91 (137)
Q Consensus 14 ~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~- 91 (137)
...+++++|||||++++...+..+++++|++++|+|++++.+++.+. .|+..+... .+++|+++++||+|+.....
T Consensus 45 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~ 122 (173)
T cd04130 45 GKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNV 122 (173)
T ss_pred CEEEEEEEEECCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhH
Confidence 33578899999999999999999999999999999999999998875 577766543 25699999999999864321
Q ss_pred -----------H-HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHH
Q 032598 92 -----------K-EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 92 -----------~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
+ .+....+.. ....+.++++||++|.|++++|+.+.-
T Consensus 123 ~~~~~~~~~~~v~~~~~~~~a~---~~~~~~~~e~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 123 LIQLARYGEKPVSQSRAKALAE---KIGACEYIECSALTQKNLKEVFDTAIL 171 (173)
T ss_pred HHHHhhcCCCCcCHHHHHHHHH---HhCCCeEEEEeCCCCCCHHHHHHHHHh
Confidence 0 001111110 011236999999999999999998864
No 122
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.85 E-value=4.4e-21 Score=122.39 Aligned_cols=126 Identities=17% Similarity=0.287 Sum_probs=102.3
Q ss_pred CCCcccceeeE---EE-eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCC
Q 032598 1 MIPTVGFNMRK---VT-KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGI 75 (137)
Q Consensus 1 ~~pt~~~~~~~---~~-~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~ 75 (137)
|+||+..|+.. ++ +..+++.+|||+||+.|..+++..+.++|.++++|++.++.|++.+. +|+.++... .++.
T Consensus 33 yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~--cp~v 110 (198)
T KOG0393|consen 33 YVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHH--CPNV 110 (198)
T ss_pred ccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhh--CCCC
Confidence 68999977753 53 66799999999999999998888899999999999999999999855 799988765 3789
Q ss_pred cEEEEeeCCCCCCCCCH-----------------HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 76 PLLVLGNKIDKPEALSK-----------------EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 76 p~ivv~nK~D~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
|+++||+|.|+...... ..+...++. ..|++|||++..|++++|+..++.+..
T Consensus 111 piiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga-------~~y~EcSa~tq~~v~~vF~~a~~~~l~ 180 (198)
T KOG0393|consen 111 PIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGA-------VKYLECSALTQKGVKEVFDEAIRAALR 180 (198)
T ss_pred CEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCc-------ceeeeehhhhhCCcHHHHHHHHHHHhc
Confidence 99999999999843211 122333332 469999999999999999999987753
No 123
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.85 E-value=3.4e-20 Score=116.43 Aligned_cols=113 Identities=24% Similarity=0.368 Sum_probs=90.8
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--H
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--K 92 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~ 92 (137)
..+.+.+||+||++.+..++..+++.+|++++|+|+++.++++....|+..+..... .++|+++++||+|+..... .
T Consensus 47 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~ 125 (162)
T cd04123 47 KRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSK 125 (162)
T ss_pred EEEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCH
Confidence 446899999999999999999999999999999999999999988888888866543 3799999999999875432 2
Q ss_pred HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 93 EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
..+...... .++.++++||++|+|++++++++.+.+
T Consensus 126 ~~~~~~~~~-----~~~~~~~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 126 SEAEEYAKS-----VGAKHFETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred HHHHHHHHH-----cCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 222222211 134589999999999999999998765
No 124
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.85 E-value=1.4e-19 Score=114.66 Aligned_cols=113 Identities=23% Similarity=0.362 Sum_probs=89.2
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH-HH
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK-ED 94 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~ 94 (137)
.+.+.+||+||++.+...+..+++.+|++++|+|+++..+++.+..|+..+.... ..+.|+++++||+|+...... ..
T Consensus 55 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~~~i~v~NK~D~~~~~~i~~~ 133 (169)
T cd04114 55 KIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA-NNKVITILVGNKIDLAERREVSQQ 133 (169)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHH
Confidence 4779999999999999999999999999999999999888888888887765432 256999999999998754432 22
Q ss_pred HHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 95 LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
....+... ..+.++++||++|+|++++|+++++.+
T Consensus 134 ~~~~~~~~----~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 134 RAEEFSDA----QDMYYLETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred HHHHHHHH----cCCeEEEeeCCCCCCHHHHHHHHHHHh
Confidence 22222211 124689999999999999999998764
No 125
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.84 E-value=8e-20 Score=114.05 Aligned_cols=124 Identities=24% Similarity=0.449 Sum_probs=96.6
Q ss_pred CCcccceeeE--EEe--CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMRK--VTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~~--~~~--~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||.+.++.. +.. ....+.+||+||++.+...+..+++++|++++|+|++++++++.+..|+..+..... .++|+
T Consensus 30 ~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ 108 (159)
T cd00154 30 KSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAP-ENIPI 108 (159)
T ss_pred CCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcE
Confidence 4677755543 332 458899999999999999999999999999999999998889998899888876532 57999
Q ss_pred EEEeeCCCCC--CCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHH
Q 032598 78 LVLGNKIDKP--EALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 78 ivv~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
++++||+|+. ......+....... ...+++++||+++.|+++++++|.+
T Consensus 109 ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~~~i~~~~~~i~~ 159 (159)
T cd00154 109 ILVGNKIDLEDQRQVSTEEAQQFAKE-----NGLLFFETSAKTGENVEELFQSLAE 159 (159)
T ss_pred EEEEEcccccccccccHHHHHHHHHH-----cCCeEEEEecCCCCCHHHHHHHHhC
Confidence 9999999995 22233333332221 2456999999999999999999863
No 126
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.84 E-value=1.6e-20 Score=118.95 Aligned_cols=116 Identities=22% Similarity=0.239 Sum_probs=89.7
Q ss_pred EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCCCCCC
Q 032598 12 VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPLLVLGNKIDKPEAL 90 (137)
Q Consensus 12 ~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 90 (137)
+...++++.+|||||++.+...+..+++.+|++++|+|++++.+++.+. .|...+.... .++|+++++||+|+.+..
T Consensus 42 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~--~~~pviiv~nK~Dl~~~~ 119 (166)
T cd01893 42 VTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLG--VKVPIILVGNKSDLRDGS 119 (166)
T ss_pred ecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhccccc
Confidence 3346789999999999988888888899999999999999999998875 5666564432 479999999999997654
Q ss_pred CHH---H----HHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 91 SKE---D----LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 91 ~~~---~----~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
... + +...+.. -..++++||++|.|++++|+.+.+.+..
T Consensus 120 ~~~~~~~~~~~~~~~~~~------~~~~~e~Sa~~~~~v~~lf~~~~~~~~~ 165 (166)
T cd01893 120 SQAGLEEEMLPIMNEFRE------IETCVECSAKTLINVSEVFYYAQKAVLH 165 (166)
T ss_pred chhHHHHHHHHHHHHHhc------ccEEEEeccccccCHHHHHHHHHHHhcC
Confidence 421 1 1112211 1258999999999999999999988763
No 127
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.84 E-value=9.9e-20 Score=119.79 Aligned_cols=128 Identities=21% Similarity=0.410 Sum_probs=101.0
Q ss_pred CCCcccceeeEE----EeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMRKV----TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~~~----~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
+.||++.++... +.+++.+.+|||+|++++...+..++++++++++|+|+++..++..+..|+..+... ..++|
T Consensus 38 ~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~ 115 (215)
T PTZ00132 38 YIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRV--CENIP 115 (215)
T ss_pred CCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHh--CCCCC
Confidence 468888766553 345699999999999999999999999999999999999999999988888887654 25689
Q ss_pred EEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++++||+|+.......+...... ...+.++++||++|.|+++.|.++++.+..
T Consensus 116 i~lv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~~v~~~f~~ia~~l~~ 169 (215)
T PTZ00132 116 IVLVGNKVDVKDRQVKARQITFHR-----KKNLQYYDISAKSNYNFEKPFLWLARRLTN 169 (215)
T ss_pred EEEEEECccCccccCCHHHHHHHH-----HcCCEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 999999999864322222222111 123468999999999999999999988764
No 128
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.84 E-value=1.6e-19 Score=115.45 Aligned_cols=111 Identities=21% Similarity=0.263 Sum_probs=84.7
Q ss_pred EeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-
Q 032598 13 TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS- 91 (137)
Q Consensus 13 ~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~- 91 (137)
+.+++.+++|||||++++...+..+++.+|++++|+|+++..+.+....|.... ..++|+++++||+|+.+...
T Consensus 63 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-----~~~~~iiiv~NK~Dl~~~~~~ 137 (179)
T cd01890 63 DGQEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-----ENNLEIIPVINKIDLPSADPE 137 (179)
T ss_pred CCCcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-----HcCCCEEEEEECCCCCcCCHH
Confidence 345788999999999999999999999999999999999876655554443322 14689999999999865322
Q ss_pred --HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 92 --KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 92 --~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
..++.+.++.. ...++++||++|+|++++|+++.+.+
T Consensus 138 ~~~~~~~~~~~~~-----~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 138 RVKQQIEDVLGLD-----PSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred HHHHHHHHHhCCC-----cccEEEeeccCCCCHHHHHHHHHhhC
Confidence 12344444321 13489999999999999999998765
No 129
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.84 E-value=9.3e-20 Score=116.71 Aligned_cols=129 Identities=15% Similarity=0.277 Sum_probs=98.3
Q ss_pred CCcccce-eeEEEeC--CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 2 IPTVGFN-MRKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 2 ~pt~~~~-~~~~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.||++.. ...+... ++.+.+|||||++++...+..++..++++++|+|+++..+++.+..++..+.......+.|++
T Consensus 31 ~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 110 (180)
T cd04137 31 YPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIV 110 (180)
T ss_pred CcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 3555532 3334333 467899999999999999999999999999999999999999998888888776545678999
Q ss_pred EEeeCCCCCCCCC--HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 79 VLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 79 vv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++||+|+..... ......... ..++.++++||++++|+.+++.++.+.+.+
T Consensus 111 lv~NK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 164 (180)
T cd04137 111 LVGNKSDLHTQRQVSTEEGKELAE-----SWGAAFLESSARENENVEEAFELLIEEIEK 164 (180)
T ss_pred EEEEchhhhhcCccCHHHHHHHHH-----HcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999864322 112111111 112468999999999999999999988764
No 130
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.82 E-value=8.3e-19 Score=109.92 Aligned_cols=113 Identities=24% Similarity=0.313 Sum_probs=91.0
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HH
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KE 93 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~ 93 (137)
.+.+++||+||++.+...+..+++.+|++++|+|+++++++.....+...+........+|+++++||+|+..... ..
T Consensus 46 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 125 (160)
T cd00876 46 TYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKE 125 (160)
T ss_pred EEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHH
Confidence 5789999999999999999999999999999999999999988888888887664446899999999999876322 22
Q ss_pred HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 94 DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
......... ..+++++||+++.|+++++++|.+.+
T Consensus 126 ~~~~~~~~~-----~~~~~~~S~~~~~~i~~l~~~l~~~i 160 (160)
T cd00876 126 EGKALAKEW-----GCPFIETSAKDNINIDEVFKLLVREI 160 (160)
T ss_pred HHHHHHHHc-----CCcEEEeccCCCCCHHHHHHHHHhhC
Confidence 222222211 14599999999999999999998753
No 131
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.82 E-value=1.3e-18 Score=110.15 Aligned_cols=123 Identities=14% Similarity=0.100 Sum_probs=82.8
Q ss_pred cccceeeEEEeCCEEEEEEecCCccccH---------HhHHHHhccCCEEEEEEeCCCCCCh--HHHHHHHHHHhcCCCC
Q 032598 4 TVGFNMRKVTKGNVTIKLWDLGGQPRFR---------SMWERYCRAVSAIVYVVDAADYDNL--PVSRSELHDLLSKPSL 72 (137)
Q Consensus 4 t~~~~~~~~~~~~~~~~~~Dt~g~~~~~---------~~~~~~~~~~~~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~ 72 (137)
|.+.+...+..++..+++|||||+.... .........+|++++|+|+++..++ +....|+..+... .
T Consensus 34 t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~--~ 111 (168)
T cd01897 34 TKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPL--F 111 (168)
T ss_pred ccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhh--c
Confidence 4445555556667899999999984210 1111112236899999999986543 5455566666432 2
Q ss_pred CCCcEEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 73 NGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 73 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
.++|+++++||+|+......... ..+. ....++++++||++|+|++++++++.+.+
T Consensus 112 ~~~pvilv~NK~Dl~~~~~~~~~-~~~~----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 112 KNKPVIVVLNKIDLLTFEDLSEI-EEEE----ELEGEEVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred CcCCeEEEEEccccCchhhHHHH-HHhh----hhccCceEEEEecccCCHHHHHHHHHHHh
Confidence 47999999999999765443331 1211 12345699999999999999999999876
No 132
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.82 E-value=2.2e-19 Score=115.84 Aligned_cols=125 Identities=18% Similarity=0.225 Sum_probs=92.1
Q ss_pred CCcccceee-EE--EeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMR-KV--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~-~~--~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ 77 (137)
.||++.++. .+ +.....+.+|||+|++.+......+++.++++++++|+++.++++.+. .|+..+.+. ..++|+
T Consensus 31 ~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~--~~~~pi 108 (187)
T cd04129 31 HPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRY--CPNVPV 108 (187)
T ss_pred CCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCE
Confidence 355554433 22 233467899999999988877777889999999999999999998886 588777653 246999
Q ss_pred EEEeeCCCCCCCCC------------H---HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALS------------K---EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~------------~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|+..... . ..+...++ .+.+++|||++|+|++++|+++++.+..
T Consensus 109 ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 174 (187)
T cd04129 109 ILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIG-------AKKYMECSALTGEGVDDVFEAATRAALL 174 (187)
T ss_pred EEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhC-------CcEEEEccCCCCCCHHHHHHHHHHHHhc
Confidence 99999999854211 0 11222222 2359999999999999999999987653
No 133
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.82 E-value=1.1e-18 Score=113.69 Aligned_cols=90 Identities=28% Similarity=0.377 Sum_probs=74.4
Q ss_pred CCCcccceee--EEEe-------CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCC-
Q 032598 1 MIPTVGFNMR--KVTK-------GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKP- 70 (137)
Q Consensus 1 ~~pt~~~~~~--~~~~-------~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~- 70 (137)
+.||+|.++. .+.. +.+.+++|||+|++++..++..++++++++++|||+++..+++.+..|+..+....
T Consensus 29 ~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~ 108 (202)
T cd04102 29 PSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDT 108 (202)
T ss_pred CCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhc
Confidence 4688885443 3332 45889999999999999999999999999999999999999999999999886531
Q ss_pred -----------------CCCCCcEEEEeeCCCCCCCC
Q 032598 71 -----------------SLNGIPLLVLGNKIDKPEAL 90 (137)
Q Consensus 71 -----------------~~~~~p~ivv~nK~D~~~~~ 90 (137)
...++|+++|+||+|+.+.+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r 145 (202)
T cd04102 109 FPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEK 145 (202)
T ss_pred cccccccccccccccccCCCCceEEEEEECccchhhc
Confidence 12468999999999997653
No 134
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.81 E-value=2.7e-19 Score=113.43 Aligned_cols=112 Identities=12% Similarity=0.198 Sum_probs=84.9
Q ss_pred eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH
Q 032598 14 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS-ELHDLLSKPSLNGIPLLVLGNKIDKPEALSK 92 (137)
Q Consensus 14 ~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 92 (137)
+..+.+++|||||++.+......+++.+|++++|+|+++..++..... |+..+... ..++|+++++||+|+......
T Consensus 45 ~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~ 122 (171)
T cd00157 45 GKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHY--CPNVPIILVGTKIDLRDDENT 122 (171)
T ss_pred CEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEccHHhhhchhh
Confidence 456789999999999888888888999999999999999888877554 55555443 247999999999998765432
Q ss_pred H-------------HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHH
Q 032598 93 E-------------DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 93 ~-------------~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
. ...+.... .....++++||++|+|+++++.++.+
T Consensus 123 ~~~~~~~~~~v~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 123 LKKLEKGKEPITPEEGEKLAKE----IGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred hhhcccCCCccCHHHHHHHHHH----hCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 1 11111111 11226999999999999999999876
No 135
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.80 E-value=1.3e-18 Score=109.57 Aligned_cols=122 Identities=16% Similarity=0.122 Sum_probs=80.9
Q ss_pred cccceeeEEEeC-CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEee
Q 032598 4 TVGFNMRKVTKG-NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGN 82 (137)
Q Consensus 4 t~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 82 (137)
|++..+..+... +..+++|||||++++......+++.+|++++|+|+++.... +....+..+ ... ...|+++++|
T Consensus 37 t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~-~~~~~~~~~-~~~--~~~~~ilv~N 112 (164)
T cd04171 37 TIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMP-QTREHLEIL-ELL--GIKRGLVVLT 112 (164)
T ss_pred eEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccH-hHHHHHHHH-HHh--CCCcEEEEEE
Confidence 334444444444 77999999999999987777788999999999999873211 111222211 111 2248999999
Q ss_pred CCCCCCCCC----HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHH
Q 032598 83 KIDKPEALS----KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 83 K~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
|+|+.+... ..++.+.++.. .....+++++||++|+|++++++.+.+
T Consensus 113 K~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 113 KADLVDEDWLELVEEEIRELLAGT--FLADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred CccccCHHHHHHHHHHHHHHHHhc--CcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 999975421 12333333321 012456999999999999999998864
No 136
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.80 E-value=2.4e-18 Score=109.02 Aligned_cols=121 Identities=17% Similarity=0.152 Sum_probs=84.2
Q ss_pred eeEEEeCCE-EEEEEecCCcc----ccHHhHHHH---hccCCEEEEEEeCCCC-CChHHHHHHHHHHhcCC-CCCCCcEE
Q 032598 9 MRKVTKGNV-TIKLWDLGGQP----RFRSMWERY---CRAVSAIVYVVDAADY-DNLPVSRSELHDLLSKP-SLNGIPLL 78 (137)
Q Consensus 9 ~~~~~~~~~-~~~~~Dt~g~~----~~~~~~~~~---~~~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~-~~~~~p~i 78 (137)
...+..++. .+.+|||||.. ..+.+...+ ++.+|++++|+|+++. .+++....|.+.+.... ...++|++
T Consensus 39 ~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~i 118 (170)
T cd01898 39 LGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRI 118 (170)
T ss_pred ceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccE
Confidence 334444554 99999999963 222233333 4569999999999998 78888777777765432 12478999
Q ss_pred EEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHh
Q 032598 79 VLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 79 vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
+++||+|+.+..........+... ....+++++||+++.|++++|+++.+.
T Consensus 119 vv~NK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 119 VVLNKIDLLDEEELFELLKELLKE---LWGKPVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred EEEEchhcCCchhhHHHHHHHHhh---CCCCCEEEEecCCCCCHHHHHHHHHhh
Confidence 999999997654443332222111 023468999999999999999999865
No 137
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.78 E-value=1e-17 Score=116.40 Aligned_cols=129 Identities=15% Similarity=0.122 Sum_probs=91.9
Q ss_pred CcccceeeEEEe-CCEEEEEEecCCccc-------cHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCC-CCC
Q 032598 3 PTVGFNMRKVTK-GNVTIKLWDLGGQPR-------FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKP-SLN 73 (137)
Q Consensus 3 pt~~~~~~~~~~-~~~~~~~~Dt~g~~~-------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~ 73 (137)
+|+..+...+.. +..++.+||+||... ....+..+++.++++++|+|+++.++++....|..++.... ...
T Consensus 191 TT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~ 270 (335)
T PRK12299 191 TTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELA 270 (335)
T ss_pred ceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcc
Confidence 455566666665 567899999999742 22233334667999999999998878888888888776542 235
Q ss_pred CCcEEEEeeCCCCCCCCCHH-HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 74 GIPLLVLGNKIDKPEALSKE-DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 74 ~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++|+++++||+|+.+..... .....+. ....++++++||++++|+++++++|.+.+.+
T Consensus 271 ~kp~IIV~NKiDL~~~~~~~~~~~~~~~----~~~~~~i~~iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 271 DKPRILVLNKIDLLDEEEEREKRAALEL----AALGGPVFLISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred cCCeEEEEECcccCCchhHHHHHHHHHH----HhcCCCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 78999999999997544322 1122111 0112468999999999999999999988764
No 138
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.76 E-value=3.1e-17 Score=103.72 Aligned_cols=115 Identities=23% Similarity=0.263 Sum_probs=81.6
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH--H
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK--E 93 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~ 93 (137)
+..+.+|||||++.+...+..+++.+|++++|+|+++....+. ...+..+. ..++|+++++||+|+...... .
T Consensus 49 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~~~~~~----~~~~p~ivv~NK~Dl~~~~~~~~~ 123 (168)
T cd01887 49 IPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQT-IEAIKLAK----AANVPFIVALNKIDKPNANPERVK 123 (168)
T ss_pred cceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHHH-HHHHHHHH----HcCCCEEEEEEceecccccHHHHH
Confidence 6899999999999999999989999999999999988543222 12222222 156899999999998754221 1
Q ss_pred HHHHHhCCCC--CCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 94 DLMEQMGLKS--ITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 94 ~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
.....+.... .....++++++||++|+|+++++++|.+..++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 167 (168)
T cd01887 124 NELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLAEK 167 (168)
T ss_pred HHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHHhhhc
Confidence 1122221111 11234679999999999999999999987653
No 139
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.76 E-value=1.7e-16 Score=101.91 Aligned_cols=123 Identities=20% Similarity=0.204 Sum_probs=90.1
Q ss_pred ceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 86 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 86 (137)
.....+...+..+.+|||||+..+...+..+++.+|++++|+|+++..+.... .++..+.. .++|+++++||+|+
T Consensus 52 ~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~~i~iv~nK~D~ 126 (189)
T cd00881 52 SGVATFEWPDRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTR-EHLRIARE----GGLPIIVAINKIDR 126 (189)
T ss_pred cceEEEeeCCEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHHH-HHHHHHHH----CCCCeEEEEECCCC
Confidence 34445666788999999999999999999999999999999999876543322 23333322 57999999999999
Q ss_pred CCCCCH----HHHHHHhCCCCC---------CCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 87 PEALSK----EDLMEQMGLKSI---------TDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 87 ~~~~~~----~~~~~~~~~~~~---------~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
...... ..+...++.... .....+++++||++|.|+++++.++.+.+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 127 VGEEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred cchhcHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 764332 233333432211 124567999999999999999999998764
No 140
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.76 E-value=7.8e-17 Score=100.85 Aligned_cols=116 Identities=25% Similarity=0.277 Sum_probs=82.4
Q ss_pred cccceeeEEEeCCEEEEEEecCCccccHH------hHHHHhc--cCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCC
Q 032598 4 TVGFNMRKVTKGNVTIKLWDLGGQPRFRS------MWERYCR--AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGI 75 (137)
Q Consensus 4 t~~~~~~~~~~~~~~~~~~Dt~g~~~~~~------~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (137)
|+......+..++..+.+|||||+..+.. ++..++. .+|++++|+|+++..... .+...+.. .++
T Consensus 30 t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~---~~~~~~~~----~~~ 102 (158)
T cd01879 30 TVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLERNL---YLTLQLLE----LGL 102 (158)
T ss_pred ccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchhHH---HHHHHHHH----cCC
Confidence 33455556667778999999999876553 3566665 899999999998754322 33333332 368
Q ss_pred cEEEEeeCCCCCCCCCH----HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 76 PLLVLGNKIDKPEALSK----EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 76 p~ivv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
|+++++||+|+...... ..+...+ +.+++++||.+|+|++++++++.+.+.
T Consensus 103 ~~iiv~NK~Dl~~~~~~~~~~~~~~~~~--------~~~~~~iSa~~~~~~~~l~~~l~~~~~ 157 (158)
T cd01879 103 PVVVALNMIDEAEKRGIKIDLDKLSELL--------GVPVVPTSARKGEGIDELKDAIAELAE 157 (158)
T ss_pred CEEEEEehhhhcccccchhhHHHHHHhh--------CCCeEEEEccCCCCHHHHHHHHHHHhc
Confidence 99999999999754322 2222222 235999999999999999999988653
No 141
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.75 E-value=5.3e-17 Score=112.65 Aligned_cols=127 Identities=16% Similarity=0.144 Sum_probs=88.5
Q ss_pred CcccceeeEEEeCC-EEEEEEecCCcccc----HHhHH---HHhccCCEEEEEEeCCCC---CChHHHHHHHHHHhcCC-
Q 032598 3 PTVGFNMRKVTKGN-VTIKLWDLGGQPRF----RSMWE---RYCRAVSAIVYVVDAADY---DNLPVSRSELHDLLSKP- 70 (137)
Q Consensus 3 pt~~~~~~~~~~~~-~~~~~~Dt~g~~~~----~~~~~---~~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~- 70 (137)
+|...+...+...+ .++++|||||.... ..+.. ..++.++++++|+|+++. ++++....|..++....
T Consensus 190 TT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~ 269 (329)
T TIGR02729 190 TTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSP 269 (329)
T ss_pred CccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhh
Confidence 34445555566555 89999999997422 12233 335679999999999976 56677766766665432
Q ss_pred CCCCCcEEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 71 SLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 71 ~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
...++|+++++||+|+.+.....++.+.+... ...+++++||++++|+++++++|.+.+
T Consensus 270 ~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~----~~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 270 ELAEKPRIVVLNKIDLLDEEELAELLKELKKA----LGKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred hhccCCEEEEEeCccCCChHHHHHHHHHHHHH----cCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 23578999999999997654444444433211 124689999999999999999998765
No 142
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.75 E-value=2.3e-17 Score=104.94 Aligned_cols=127 Identities=24% Similarity=0.189 Sum_probs=86.5
Q ss_pred CcccceeeEEEeC-CEEEEEEecCCccc----cHH---hHHHHhccCCEEEEEEeCCCC------CChHHHHHHHHHHhc
Q 032598 3 PTVGFNMRKVTKG-NVTIKLWDLGGQPR----FRS---MWERYCRAVSAIVYVVDAADY------DNLPVSRSELHDLLS 68 (137)
Q Consensus 3 pt~~~~~~~~~~~-~~~~~~~Dt~g~~~----~~~---~~~~~~~~~~~~i~v~d~~~~------~~~~~~~~~~~~~~~ 68 (137)
+|.+.+...+..+ +..+.+|||||... .+. .....++.+|++++|+|+++. .+++....+...+..
T Consensus 29 ~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (176)
T cd01881 29 TTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKL 108 (176)
T ss_pred eeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHH
Confidence 3455555566666 88999999999732 112 223457789999999999987 456666666666654
Q ss_pred CCC------CCCCcEEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHh
Q 032598 69 KPS------LNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 69 ~~~------~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
... ..++|+++++||+|+............. ........++++||++++|++++++++.+.
T Consensus 109 ~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~---~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 109 YDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRE---LALEEGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHH---HhcCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 322 2479999999999997654433321001 111224469999999999999999999764
No 143
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.75 E-value=9.3e-17 Score=104.82 Aligned_cols=121 Identities=23% Similarity=0.237 Sum_probs=82.1
Q ss_pred CcccceeeEEEeCC-EEEEEEecCCccc---------cHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCC
Q 032598 3 PTVGFNMRKVTKGN-VTIKLWDLGGQPR---------FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSL 72 (137)
Q Consensus 3 pt~~~~~~~~~~~~-~~~~~~Dt~g~~~---------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 72 (137)
||+......+...+ ..+.+|||||... +...+ ..+..+|++++|+|++++.+......+.+.+... ..
T Consensus 74 ~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~-~~ 151 (204)
T cd01878 74 ATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKEL-GA 151 (204)
T ss_pred eeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHH-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHc-Cc
Confidence 44444444454434 4899999999732 22221 2366899999999999987777665555544332 33
Q ss_pred CCCcEEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 73 NGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 73 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
.++|+++|+||+|+.+..... .... ....+++++||++|.|+++++++|...+
T Consensus 152 ~~~~viiV~NK~Dl~~~~~~~---~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 152 EDIPMILVLNKIDLLDDEELE---ERLE-----AGRPDAVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred CCCCEEEEEEccccCChHHHH---HHhh-----cCCCceEEEEcCCCCCHHHHHHHHHhhC
Confidence 568999999999996543322 1111 1234589999999999999999998753
No 144
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.75 E-value=8.7e-17 Score=104.28 Aligned_cols=108 Identities=25% Similarity=0.310 Sum_probs=75.7
Q ss_pred EEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC
Q 032598 11 KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL 90 (137)
Q Consensus 11 ~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 90 (137)
.+..++.++++|||||++++...+..+++.+|++++|+|+++.. ......++..+.. .++|+++++||+|+....
T Consensus 59 ~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~ 133 (194)
T cd01891 59 AVTYKDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPDAR 133 (194)
T ss_pred EEEECCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCCCCCC
Confidence 46778899999999999999999999999999999999998742 2222333333322 468999999999996543
Q ss_pred CH---HHHHHHhCCCC--CCCCceeEEEeecccCCChH
Q 032598 91 SK---EDLMEQMGLKS--ITDREVCCYMISCKNSTNID 123 (137)
Q Consensus 91 ~~---~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~v~ 123 (137)
.. .++...+.... .....++++++||++|.|+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~ 171 (194)
T cd01891 134 PEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASL 171 (194)
T ss_pred HHHHHHHHHHHHHHhCCccccCccCEEEeehhcccccc
Confidence 21 22223221111 11225679999999998763
No 145
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.74 E-value=1.2e-16 Score=118.22 Aligned_cols=109 Identities=24% Similarity=0.289 Sum_probs=83.9
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH---
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK--- 92 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--- 92 (137)
.+++++|||||+.++...+..+++.+|++++|+|+++..+.+....|..... .++|+++++||+|+......
T Consensus 69 ~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~-----~~ipiIiViNKiDl~~~~~~~~~ 143 (595)
T TIGR01393 69 TYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE-----NDLEIIPVINKIDLPSADPERVK 143 (595)
T ss_pred EEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH-----cCCCEEEEEECcCCCccCHHHHH
Confidence 4899999999999999999999999999999999998766655544443331 46899999999998653221
Q ss_pred HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 93 EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
.++.+.++.. ...++++||++|.|++++|++|.+.+-
T Consensus 144 ~el~~~lg~~-----~~~vi~vSAktG~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 144 KEIEEVIGLD-----ASEAILASAKTGIGIEEILEAIVKRVP 180 (595)
T ss_pred HHHHHHhCCC-----cceEEEeeccCCCCHHHHHHHHHHhCC
Confidence 2344444321 124899999999999999999988653
No 146
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.74 E-value=1.8e-16 Score=98.99 Aligned_cols=114 Identities=19% Similarity=0.202 Sum_probs=79.2
Q ss_pred eeeEEEeCCEEEEEEecCCccccHH--------hHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEE
Q 032598 8 NMRKVTKGNVTIKLWDLGGQPRFRS--------MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLV 79 (137)
Q Consensus 8 ~~~~~~~~~~~~~~~Dt~g~~~~~~--------~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 79 (137)
.......++..+.+|||||...+.. .....++.+|++++|+|+.+..+.... ++....+. .+.|+++
T Consensus 36 ~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~--~~~~~~~~---~~~piii 110 (157)
T cd01894 36 IYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADE--EIAKYLRK---SKKPVIL 110 (157)
T ss_pred eeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHH--HHHHHHHh---cCCCEEE
Confidence 3445566778999999999977543 344567889999999999875443322 22222222 3599999
Q ss_pred EeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 80 LGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 80 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
++||+|+.+..........++. .+++++||++|+|++++++++++.+
T Consensus 111 v~nK~D~~~~~~~~~~~~~~~~-------~~~~~~Sa~~~~gv~~l~~~l~~~~ 157 (157)
T cd01894 111 VVNKVDNIKEEDEAAEFYSLGF-------GEPIPISAEHGRGIGDLLDAILELL 157 (157)
T ss_pred EEECcccCChHHHHHHHHhcCC-------CCeEEEecccCCCHHHHHHHHHhhC
Confidence 9999999765433222222221 1479999999999999999998753
No 147
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.74 E-value=1.2e-16 Score=111.85 Aligned_cols=120 Identities=22% Similarity=0.204 Sum_probs=83.5
Q ss_pred CCcccceeeEEEe-CCEEEEEEecCCcc---------ccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCC
Q 032598 2 IPTVGFNMRKVTK-GNVTIKLWDLGGQP---------RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPS 71 (137)
Q Consensus 2 ~pt~~~~~~~~~~-~~~~~~~~Dt~g~~---------~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~ 71 (137)
.+|.....+.+.. ++..+.+|||+|.. .+++.+ ..++.||++++|+|++++.+.+....|...+ ....
T Consensus 221 ~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L-~~l~ 298 (351)
T TIGR03156 221 FATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATL-EEVREADLLLHVVDASDPDREEQIEAVEKVL-EELG 298 (351)
T ss_pred ccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHH-HHHHhCCEEEEEEECCCCchHHHHHHHHHHH-HHhc
Confidence 3566666666665 56899999999972 233332 2478899999999999987776654443333 2222
Q ss_pred CCCCcEEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHh
Q 032598 72 LNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 72 ~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
..++|+++|+||+|+........ .... ..+++++||++|+|+++++++|.+.
T Consensus 299 ~~~~piIlV~NK~Dl~~~~~v~~---~~~~------~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 299 AEDIPQLLVYNKIDLLDEPRIER---LEEG------YPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred cCCCCEEEEEEeecCCChHhHHH---HHhC------CCCEEEEEccCCCCHHHHHHHHHhh
Confidence 35789999999999965322211 1110 1247999999999999999999865
No 148
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.74 E-value=1.1e-16 Score=103.71 Aligned_cols=113 Identities=17% Similarity=0.079 Sum_probs=75.3
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH---
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK--- 92 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--- 92 (137)
+..+.+|||||+..+........+.+|++++|+|+++.........+. +... .++|+++++||+|+......
T Consensus 67 ~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~~~~~ 141 (192)
T cd01889 67 NLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEERERK 141 (192)
T ss_pred CceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHHHHHH
Confidence 789999999999765444444456789999999998754433322221 1111 35799999999998643322
Q ss_pred -HHHHHHhCCC--CCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 93 -EDLMEQMGLK--SITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 93 -~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
.++.+.++.. ......++++++||++|+|++++++++.+.+
T Consensus 142 ~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~ 185 (192)
T cd01889 142 IEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLI 185 (192)
T ss_pred HHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcc
Confidence 2222221100 0112346799999999999999999998875
No 149
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.73 E-value=4.5e-17 Score=106.34 Aligned_cols=113 Identities=15% Similarity=0.140 Sum_probs=77.0
Q ss_pred EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHH---
Q 032598 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE--- 93 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--- 93 (137)
.++.+|||||++++...+...+..+|++++|+|++++....+....+..+... ...|+++++||+|+.......
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~---~~~~iiivvNK~Dl~~~~~~~~~~ 159 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM---GLKHIIIVQNKIDLVKEEQALENY 159 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc---CCCcEEEEEEchhccCHHHHHHHH
Confidence 78999999999998888888888999999999998742111112222222111 225789999999997532221
Q ss_pred -HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 94 -DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 94 -~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
.+...+.. .....++++++||++|+|++++++++.+.+.
T Consensus 160 ~~i~~~~~~--~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 160 EQIKKFVKG--TIAENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred HHHHHHHhc--cccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 22222221 1112456999999999999999999988664
No 150
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.72 E-value=7.7e-17 Score=99.34 Aligned_cols=112 Identities=29% Similarity=0.502 Sum_probs=85.8
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHH
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDL 95 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 95 (137)
+..+.+||+||+..+...+..+++.+|++++|+|++++.+......+...........++|+++++||+|+.........
T Consensus 44 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~ 123 (157)
T cd00882 44 KVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEE 123 (157)
T ss_pred EEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHH
Confidence 78899999999998888888899999999999999998777776666333333334578999999999999765443322
Q ss_pred H--HHhCCCCCCCCceeEEEeecccCCChHHHHHHHHH
Q 032598 96 M--EQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 96 ~--~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
. .... ....++++++|++.+.|+++++++|.+
T Consensus 124 ~~~~~~~----~~~~~~~~~~s~~~~~~i~~~~~~l~~ 157 (157)
T cd00882 124 ELAEQLA----KELGVPYFETSAKTGENVEELFEELAE 157 (157)
T ss_pred HHHHHHH----hhcCCcEEEEecCCCCChHHHHHHHhC
Confidence 1 1111 122457999999999999999999863
No 151
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.72 E-value=7.4e-16 Score=99.50 Aligned_cols=124 Identities=26% Similarity=0.259 Sum_probs=88.2
Q ss_pred ccceeeEEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEee
Q 032598 5 VGFNMRKVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGN 82 (137)
Q Consensus 5 ~~~~~~~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 82 (137)
+......+. ..+..++++||||+..+.......++.+|++++|+|+.+.-... ....+..+.. .++|+++++|
T Consensus 56 i~~~~~~~~~~~~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~----~~~p~ivvlN 130 (188)
T PF00009_consen 56 IDLSFISFEKNENNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILRE----LGIPIIVVLN 130 (188)
T ss_dssp SSSEEEEEEBTESSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHH----TT-SEEEEEE
T ss_pred cccccccccccccccceeecccccccceeecccceecccccceeeeecccccccc-cccccccccc----cccceEEeee
Confidence 344555666 78899999999999999998889999999999999998764332 2233333322 5788999999
Q ss_pred CCCCCCCCC---HHHHHHHh-CCCCCCC-CceeEEEeecccCCChHHHHHHHHHhh
Q 032598 83 KIDKPEALS---KEDLMEQM-GLKSITD-REVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 83 K~D~~~~~~---~~~~~~~~-~~~~~~~-~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
|+|+....- ..++...+ +...... ..++++++||++|.|+++|++.|.+.+
T Consensus 131 K~D~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 131 KMDLIEKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp TCTSSHHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred eccchhhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 999973211 12222222 1111222 357899999999999999999998765
No 152
>PLN00023 GTP-binding protein; Provisional
Probab=99.72 E-value=6.1e-17 Score=110.94 Aligned_cols=89 Identities=18% Similarity=0.396 Sum_probs=74.0
Q ss_pred CCCccccee--eEEEe---------------CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHH
Q 032598 1 MIPTVGFNM--RKVTK---------------GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSEL 63 (137)
Q Consensus 1 ~~pt~~~~~--~~~~~---------------~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~ 63 (137)
+.||+|..+ ..+.. ..+.+++|||+|+++++.++..++++++++|+|||+++..+++.+..|+
T Consensus 50 ~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl 129 (334)
T PLN00023 50 PPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWA 129 (334)
T ss_pred cCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHH
Confidence 468998655 33332 3478999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCC-----------CCCCcEEEEeeCCCCCCC
Q 032598 64 HDLLSKPS-----------LNGIPLLVLGNKIDKPEA 89 (137)
Q Consensus 64 ~~~~~~~~-----------~~~~p~ivv~nK~D~~~~ 89 (137)
..+..... ..++|+++|+||+|+...
T Consensus 130 ~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 130 SEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred HHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 98876421 135899999999999654
No 153
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.72 E-value=5.2e-16 Score=115.04 Aligned_cols=110 Identities=22% Similarity=0.283 Sum_probs=83.5
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH--
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK-- 92 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-- 92 (137)
+++.+++|||||+.++...+..+++.+|++++|+|+++....+....|.... ..++|+++++||+|+......
T Consensus 72 ~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~-----~~~lpiIvViNKiDl~~a~~~~v 146 (600)
T PRK05433 72 ETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-----ENDLEIIPVLNKIDLPAADPERV 146 (600)
T ss_pred CcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-----HCCCCEEEEEECCCCCcccHHHH
Confidence 4689999999999999999999999999999999999865554444443322 146899999999998654321
Q ss_pred -HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 93 -EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 93 -~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
.++.+.++.. ...++++||++|.|+++++++|.+.+-
T Consensus 147 ~~ei~~~lg~~-----~~~vi~iSAktG~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 147 KQEIEDVIGID-----ASDAVLVSAKTGIGIEEVLEAIVERIP 184 (600)
T ss_pred HHHHHHHhCCC-----cceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 2333333322 124899999999999999999987653
No 154
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.72 E-value=4.5e-16 Score=112.94 Aligned_cols=120 Identities=18% Similarity=0.133 Sum_probs=81.1
Q ss_pred eEEEeCCEEEEEEecCCcc----------ccHHhH-HHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 10 RKVTKGNVTIKLWDLGGQP----------RFRSMW-ERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 10 ~~~~~~~~~~~~~Dt~g~~----------~~~~~~-~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
..+..++..+.+|||||.. .+.... ..+++.+|++++|+|+++..+.+... ++..+.. .++|++
T Consensus 252 ~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piI 326 (472)
T PRK03003 252 SLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALV 326 (472)
T ss_pred EEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEE
Confidence 3455677889999999963 222222 23578999999999999987776653 3333322 578999
Q ss_pred EEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 79 VLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 79 vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+|+||+|+.+.....................+++++||++|.|++++|+.+.+.+.
T Consensus 327 iV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 327 LAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALE 382 (472)
T ss_pred EEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 99999999753322222222111011112346899999999999999999998764
No 155
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.71 E-value=7.4e-16 Score=95.79 Aligned_cols=123 Identities=20% Similarity=0.292 Sum_probs=89.6
Q ss_pred CcccceeeE--EEeCC--EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCC-CChHHHH-HHHHHHhcCCCCCCCc
Q 032598 3 PTVGFNMRK--VTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADY-DNLPVSR-SELHDLLSKPSLNGIP 76 (137)
Q Consensus 3 pt~~~~~~~--~~~~~--~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~p 76 (137)
||++.++.. +..++ +.+.+||+||+..+...+..+.+++++++.++|.... .++.... .+...+...... +.|
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p 110 (161)
T TIGR00231 32 PGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVP 110 (161)
T ss_pred CCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCc
Confidence 455544433 55556 8899999999999999999999999999999998876 5665544 555555554332 789
Q ss_pred EEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHH
Q 032598 77 LLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLV 130 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 130 (137)
+++++||+|+............+... ....++++||+.|.|+++++++|.
T Consensus 111 ~ivv~nK~D~~~~~~~~~~~~~~~~~----~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 111 IILVGNKIDLRDAKLKTHVAFLFAKL----NGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred EEEEEEcccCCcchhhHHHHHHHhhc----cCCceEEeecCCCCCHHHHHHHhh
Confidence 99999999997644333333333321 123599999999999999999874
No 156
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.71 E-value=6.1e-16 Score=96.90 Aligned_cols=121 Identities=26% Similarity=0.386 Sum_probs=97.5
Q ss_pred cccceeeEEEeC-CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCC-CcEEEEe
Q 032598 4 TVGFNMRKVTKG-NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNG-IPLLVLG 81 (137)
Q Consensus 4 t~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~p~ivv~ 81 (137)
|+...+..+... +..+.+++||||++++-+|..+.+++.+.++++|.+.+..+.. ..+..++.. .+ +|+++++
T Consensus 54 Tva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~~a--~~ii~f~~~---~~~ip~vVa~ 128 (187)
T COG2229 54 TVAMDFGSIELDEDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHA--EEIIDFLTS---RNPIPVVVAI 128 (187)
T ss_pred eEeecccceEEcCcceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcchHH--HHHHHHHhh---ccCCCEEEEe
Confidence 455666666544 4999999999999999999999999999999999999877622 222333333 33 9999999
Q ss_pred eCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHh
Q 032598 82 NKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 82 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
||.|+....+.+.+.+.+.... ...+.++++|..+++..+.+..+...
T Consensus 129 NK~DL~~a~ppe~i~e~l~~~~---~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 129 NKQDLFDALPPEKIREALKLEL---LSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eccccCCCCCHHHHHHHHHhcc---CCCceeeeecccchhHHHHHHHHHhh
Confidence 9999999999988888887542 34569999999999999998888765
No 157
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.71 E-value=4.3e-16 Score=111.92 Aligned_cols=119 Identities=17% Similarity=0.127 Sum_probs=80.8
Q ss_pred EEEeCCEEEEEEecCCccccHHh-----------HHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEE
Q 032598 11 KVTKGNVTIKLWDLGGQPRFRSM-----------WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLV 79 (137)
Q Consensus 11 ~~~~~~~~~~~~Dt~g~~~~~~~-----------~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 79 (137)
.+..++..+.+|||||..+.... ...+++.+|++++|+|+++..+.++.. ++..+.. .++|+++
T Consensus 214 ~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~----~~~~iii 288 (429)
T TIGR03594 214 PFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLR-IAGLILE----AGKALVI 288 (429)
T ss_pred EEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH----cCCcEEE
Confidence 34556778999999997554321 124578999999999999876655442 2222322 4689999
Q ss_pred EeeCCCCCC-CCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 80 LGNKIDKPE-ALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 80 v~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
++||+|+.+ .....++...+.........++++++||++|.|++++|+++.+...
T Consensus 289 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 289 VVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred EEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999999972 2222333333321111123457999999999999999999988664
No 158
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.70 E-value=8.1e-16 Score=111.64 Aligned_cols=114 Identities=17% Similarity=0.170 Sum_probs=78.8
Q ss_pred eEEEeCCEEEEEEecCCccc--------cHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 10 RKVTKGNVTIKLWDLGGQPR--------FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 10 ~~~~~~~~~~~~~Dt~g~~~--------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
..+...+..+.+|||||.+. +...+..+++.+|++++|+|+++..+... ..+...+ . ..++|+++|+
T Consensus 79 ~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~-~~i~~~l-~---~~~~piilV~ 153 (472)
T PRK03003 79 YDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATD-EAVARVL-R---RSGKPVILAA 153 (472)
T ss_pred EEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHH-H---HcCCCEEEEE
Confidence 34556678899999999762 34455667899999999999998765543 1232222 2 2579999999
Q ss_pred eCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 82 NKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 82 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
||+|+...... ........ .. ..+++||++|.|++++|+++++.+.+
T Consensus 154 NK~Dl~~~~~~--~~~~~~~g-~~----~~~~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 154 NKVDDERGEAD--AAALWSLG-LG----EPHPVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred ECccCCccchh--hHHHHhcC-CC----CeEEEEcCCCCCcHHHHHHHHhhccc
Confidence 99998643221 11211111 11 25799999999999999999987643
No 159
>PRK15494 era GTPase Era; Provisional
Probab=99.70 E-value=1.3e-15 Score=106.34 Aligned_cols=118 Identities=19% Similarity=0.194 Sum_probs=78.8
Q ss_pred eeeEEEeCCEEEEEEecCCccc-cHHhH-------HHHhccCCEEEEEEeCCCCCChHHHHH-HHHHHhcCCCCCCCcEE
Q 032598 8 NMRKVTKGNVTIKLWDLGGQPR-FRSMW-------ERYCRAVSAIVYVVDAADYDNLPVSRS-ELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 8 ~~~~~~~~~~~~~~~Dt~g~~~-~~~~~-------~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p~i 78 (137)
....+..++.++.+|||||... +..+. ...++.+|++++|+|..+ ++..... ++..+.. .+.|.+
T Consensus 91 ~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~----~~~p~I 164 (339)
T PRK15494 91 ITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLK--SFDDITHNILDKLRS----LNIVPI 164 (339)
T ss_pred EEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHh----cCCCEE
Confidence 3345667788999999999843 22211 124678999999999766 3444333 3333322 346778
Q ss_pred EEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 79 VLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 79 vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++||+|+... ...++...+... .....++++||++|.|++++++++.+.+.+
T Consensus 165 lViNKiDl~~~-~~~~~~~~l~~~---~~~~~i~~iSAktg~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 165 FLLNKIDIESK-YLNDIKAFLTEN---HPDSLLFPISALSGKNIDGLLEYITSKAKI 217 (339)
T ss_pred EEEEhhcCccc-cHHHHHHHHHhc---CCCcEEEEEeccCccCHHHHHHHHHHhCCC
Confidence 99999998653 333444443221 112468999999999999999999987653
No 160
>PRK04213 GTP-binding protein; Provisional
Probab=99.70 E-value=8.2e-16 Score=100.14 Aligned_cols=114 Identities=27% Similarity=0.341 Sum_probs=74.3
Q ss_pred EEEEEecCC-----------ccccHHhHHHHhc----cCCEEEEEEeCCCCCChH---------HHHHHHHHHhcCCCCC
Q 032598 18 TIKLWDLGG-----------QPRFRSMWERYCR----AVSAIVYVVDAADYDNLP---------VSRSELHDLLSKPSLN 73 (137)
Q Consensus 18 ~~~~~Dt~g-----------~~~~~~~~~~~~~----~~~~~i~v~d~~~~~~~~---------~~~~~~~~~~~~~~~~ 73 (137)
.+.+||||| +++++..+..+++ .++++++|+|+++...+. .....+..... ..
T Consensus 53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~ 129 (201)
T PRK04213 53 DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---EL 129 (201)
T ss_pred ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---Hc
Confidence 689999999 5677777777764 357888999886532210 00111112222 24
Q ss_pred CCcEEEEeeCCCCCCCC--CHHHHHHHhCCCC-CCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 74 GIPLLVLGNKIDKPEAL--SKEDLMEQMGLKS-ITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 74 ~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++|+++++||+|+.+.. ...++.+.++... .......++++||++| |+++++++|.+.+.+
T Consensus 130 ~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 130 GIPPIVAVNKMDKIKNRDEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred CCCeEEEEECccccCcHHHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 79999999999996543 2344555555311 1001125899999999 999999999988764
No 161
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.70 E-value=5.8e-16 Score=111.78 Aligned_cols=129 Identities=22% Similarity=0.231 Sum_probs=88.1
Q ss_pred CCcccceeeEEEeCCEEEEEEecCCccc----cHHh---HHHHhccCCEEEEEEeCCCC----CChHHHHHHHHHHhcCC
Q 032598 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPR----FRSM---WERYCRAVSAIVYVVDAADY----DNLPVSRSELHDLLSKP 70 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~~~~~~~Dt~g~~~----~~~~---~~~~~~~~~~~i~v~d~~~~----~~~~~~~~~~~~~~~~~ 70 (137)
.+|+..+...++.++.++.+|||||... ...+ ...+++.++++++|+|+++. +++++...+..++....
T Consensus 191 fTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~ 270 (500)
T PRK12296 191 FTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYA 270 (500)
T ss_pred cccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhh
Confidence 3566677778888889999999999632 1122 22246779999999999863 34444444444443322
Q ss_pred ----------CCCCCcEEEEeeCCCCCCCCCHHH-HHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 71 ----------SLNGIPLLVLGNKIDKPEALSKED-LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 71 ----------~~~~~p~ivv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
...+.|+++++||+|+.+.....+ +...+.. ..+.++++||++++|+++++.+|.+.+..
T Consensus 271 ~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~-----~g~~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 271 PALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEA-----RGWPVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred hcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHH-----cCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 235789999999999975433222 2222221 23569999999999999999999988764
No 162
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.70 E-value=6.6e-16 Score=111.31 Aligned_cols=110 Identities=16% Similarity=0.150 Sum_probs=81.1
Q ss_pred ceeeEEEeCCEEEEEEecCCccccHHh--------HHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFRSM--------WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~~~--------~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
+....+..++..+.+|||||.+..... ...+++.+|++++|+|++++.+.+....|.. ..++|++
T Consensus 253 ~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~-------~~~~pii 325 (449)
T PRK05291 253 VIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE-------LKDKPVI 325 (449)
T ss_pred cEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh-------cCCCCcE
Confidence 344556677889999999998654332 2235788999999999998877664433322 3578999
Q ss_pred EEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 79 VLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 79 vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+|+||+|+....... . .....++++||++|+|+++++++|.+.+.
T Consensus 326 iV~NK~DL~~~~~~~------~-----~~~~~~i~iSAktg~GI~~L~~~L~~~l~ 370 (449)
T PRK05291 326 VVLNKADLTGEIDLE------E-----ENGKPVIRISAKTGEGIDELREAIKELAF 370 (449)
T ss_pred EEEEhhhccccchhh------h-----ccCCceEEEEeeCCCCHHHHHHHHHHHHh
Confidence 999999997543322 1 11335899999999999999999998764
No 163
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.69 E-value=1.6e-15 Score=108.05 Aligned_cols=125 Identities=21% Similarity=0.229 Sum_probs=86.4
Q ss_pred CcccceeeEEEeC-CEEEEEEecCCccc----cHHhHHHH---hccCCEEEEEEeCCCC---CChHHHHHHHHHHhcCC-
Q 032598 3 PTVGFNMRKVTKG-NVTIKLWDLGGQPR----FRSMWERY---CRAVSAIVYVVDAADY---DNLPVSRSELHDLLSKP- 70 (137)
Q Consensus 3 pt~~~~~~~~~~~-~~~~~~~Dt~g~~~----~~~~~~~~---~~~~~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~- 70 (137)
+|...+...+... +.++.+||+||... ...+...+ ++.++++++|+|+++. +++++...|...+....
T Consensus 191 TTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~ 270 (424)
T PRK12297 191 TTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNP 270 (424)
T ss_pred ceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhch
Confidence 3444555556555 68899999999742 22233444 4569999999999865 56666666666665432
Q ss_pred CCCCCcEEEEeeCCCCCCCCC-HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 71 SLNGIPLLVLGNKIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 71 ~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
...++|.++++||+|+..... ...+...+. ++++++||++++|+++++++|.+.+.+
T Consensus 271 ~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~--------~~i~~iSA~tgeGI~eL~~~L~~~l~~ 328 (424)
T PRK12297 271 RLLERPQIVVANKMDLPEAEENLEEFKEKLG--------PKVFPISALTGQGLDELLYAVAELLEE 328 (424)
T ss_pred hccCCcEEEEEeCCCCcCCHHHHHHHHHHhC--------CcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 235799999999999843211 122333332 358999999999999999999987754
No 164
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.69 E-value=1.2e-15 Score=99.71 Aligned_cols=117 Identities=27% Similarity=0.338 Sum_probs=86.4
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccC-CEEEEEEeCCCC-CChHHHHHHHHHHhcCC--CCCCCcEEEEeeCCCCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAV-SAIVYVVDAADY-DNLPVSRSELHDLLSKP--SLNGIPLLVLGNKIDKPEAL 90 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~-~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~~~ 90 (137)
.+..+.+|||||+.+++..+..+++.+ +++|+|+|+++. .++.....++..++... ...++|+++++||+|+....
T Consensus 46 ~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~ 125 (203)
T cd04105 46 KGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAK 125 (203)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccC
Confidence 468899999999999999999999998 999999999997 67777777766654432 22579999999999987665
Q ss_pred CHHHHHHHhC-----------C---------C---------------CCCCCceeEEEeecccCC-ChHHHHHHHHH
Q 032598 91 SKEDLMEQMG-----------L---------K---------------SITDREVCCYMISCKNST-NIDTVIDWLVK 131 (137)
Q Consensus 91 ~~~~~~~~~~-----------~---------~---------------~~~~~~~~~~~~Sa~~~~-~v~~~~~~i~~ 131 (137)
+...+...+. . . .....++.+.++|++.+. |++...+||.+
T Consensus 126 ~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 126 PAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKESLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 5322211110 0 0 001236778999998876 69999999875
No 165
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.69 E-value=9.7e-16 Score=93.37 Aligned_cols=130 Identities=16% Similarity=0.269 Sum_probs=102.7
Q ss_pred CCCccc-ceeeEEEeC---CEEEEEEecCCcccc-HHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCC
Q 032598 1 MIPTVG-FNMRKVTKG---NVTIKLWDLGGQPRF-RSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGI 75 (137)
Q Consensus 1 ~~pt~~-~~~~~~~~~---~~~~~~~Dt~g~~~~-~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (137)
+.||++ +....++.+ .-.+.++||.|...+ ..+-.+|++-+|++++||+..+++||+.+..+...|.+......+
T Consensus 40 ~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEv 119 (198)
T KOG3883|consen 40 LHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEV 119 (198)
T ss_pred cccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccc
Confidence 468888 444556533 367999999998877 677888999999999999999999999988777777777777889
Q ss_pred cEEEEeeCCCCCCCCCHH-HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 76 PLLVLGNKIDKPEALSKE-DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 76 p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
|+++++||+|+.++..+. ...... ....++..++++|.+..++-+.|..++..+-
T Consensus 120 piVVLaN~rdr~~p~~vd~d~A~~W----a~rEkvkl~eVta~dR~sL~epf~~l~~rl~ 175 (198)
T KOG3883|consen 120 PIVVLANKRDRAEPREVDMDVAQIW----AKREKVKLWEVTAMDRPSLYEPFTYLASRLH 175 (198)
T ss_pred cEEEEechhhcccchhcCHHHHHHH----HhhhheeEEEEEeccchhhhhHHHHHHHhcc
Confidence 999999999998765542 233322 2344667999999999999999998887653
No 166
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.68 E-value=3.2e-16 Score=108.49 Aligned_cols=135 Identities=21% Similarity=0.291 Sum_probs=105.7
Q ss_pred CCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCC----------CChHHHHHHHHHHhcCCC
Q 032598 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADY----------DNLPVSRSELHDLLSKPS 71 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~ 71 (137)
.||.|++...+..++..+.+||++|+...+..|.+++.++++++||+|+++. ..+.+....++.+.....
T Consensus 146 ~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~ 225 (317)
T cd00066 146 VKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRW 225 (317)
T ss_pred cccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcc
Confidence 5889999999999999999999999999999999999999999999999974 346667777888887777
Q ss_pred CCCCcEEEEeeCCCCCCCC------------------CHH----HHHHHhCCCC-CCCCceeEEEeecccCCChHHHHHH
Q 032598 72 LNGIPLLVLGNKIDKPEAL------------------SKE----DLMEQMGLKS-ITDREVCCYMISCKNSTNIDTVIDW 128 (137)
Q Consensus 72 ~~~~p~ivv~nK~D~~~~~------------------~~~----~~~~~~~~~~-~~~~~~~~~~~Sa~~~~~v~~~~~~ 128 (137)
..++|+++++||.|+.... ... -+...+.... ...+.+..+.++|.+..++..+|+.
T Consensus 226 ~~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~ 305 (317)
T cd00066 226 FANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDA 305 (317)
T ss_pred ccCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHH
Confidence 7889999999999953321 011 1222221111 1235677889999999999999999
Q ss_pred HHHhhhhc
Q 032598 129 LVKHSKSK 136 (137)
Q Consensus 129 i~~~~~~~ 136 (137)
+.+.+..+
T Consensus 306 v~~~i~~~ 313 (317)
T cd00066 306 VKDIILQN 313 (317)
T ss_pred HHHHHHHH
Confidence 99888653
No 167
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.68 E-value=6.9e-16 Score=107.66 Aligned_cols=134 Identities=18% Similarity=0.294 Sum_probs=106.2
Q ss_pred CCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCC----------CChHHHHHHHHHHhcCCC
Q 032598 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADY----------DNLPVSRSELHDLLSKPS 71 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~ 71 (137)
.||.|++...+..++..+.+||++|+...+..|.+++..+++++||+|+++. ..+.+....++.+.....
T Consensus 169 ~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~ 248 (342)
T smart00275 169 VPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRW 248 (342)
T ss_pred CCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcc
Confidence 6899999999999999999999999999999999999999999999999974 246777778888888777
Q ss_pred CCCCcEEEEeeCCCCCCCC----C-------------H----HHHHHHhCCCCC--CCCceeEEEeecccCCChHHHHHH
Q 032598 72 LNGIPLLVLGNKIDKPEAL----S-------------K----EDLMEQMGLKSI--TDREVCCYMISCKNSTNIDTVIDW 128 (137)
Q Consensus 72 ~~~~p~ivv~nK~D~~~~~----~-------------~----~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v~~~~~~ 128 (137)
..++|+++++||.|+.... + . .-+...+..... ..+.+..+.++|.+..++..+|+.
T Consensus 249 ~~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~ 328 (342)
T smart00275 249 FANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDA 328 (342)
T ss_pred ccCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHH
Confidence 7889999999999964321 1 0 112222221111 234677889999999999999999
Q ss_pred HHHhhhh
Q 032598 129 LVKHSKS 135 (137)
Q Consensus 129 i~~~~~~ 135 (137)
+.+.+.+
T Consensus 329 v~~~I~~ 335 (342)
T smart00275 329 VKDIILQ 335 (342)
T ss_pred HHHHHHH
Confidence 8888764
No 168
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.68 E-value=4.7e-16 Score=95.97 Aligned_cols=98 Identities=19% Similarity=0.144 Sum_probs=66.4
Q ss_pred EEEecCCcc-----ccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC-CHH
Q 032598 20 KLWDLGGQP-----RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL-SKE 93 (137)
Q Consensus 20 ~~~Dt~g~~-----~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~ 93 (137)
.+|||||+. .++.+.. .++.+|++++|+|++++.++.. ..|... ...|+++++||+|+.+.. ..+
T Consensus 38 ~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d~~~~~s~~~-~~~~~~-------~~~p~ilv~NK~Dl~~~~~~~~ 108 (142)
T TIGR02528 38 GAIDTPGEYVENRRLYSALIV-TAADADVIALVQSATDPESRFP-PGFASI-------FVKPVIGLVTKIDLAEADVDIE 108 (142)
T ss_pred eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEecCCCCCcCCC-hhHHHh-------ccCCeEEEEEeeccCCcccCHH
Confidence 689999983 3444433 4789999999999999887654 233221 124999999999986532 222
Q ss_pred HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHH
Q 032598 94 DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLV 130 (137)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 130 (137)
......... ...+++++||++|+|++++|+++.
T Consensus 109 ~~~~~~~~~----~~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 109 RAKELLETA----GAEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred HHHHHHHHc----CCCcEEEEecCCCCCHHHHHHHHh
Confidence 222211111 012589999999999999999875
No 169
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.67 E-value=4.6e-15 Score=92.55 Aligned_cols=108 Identities=16% Similarity=0.121 Sum_probs=78.3
Q ss_pred eeEEEeCCEEEEEEecCCccccHH--------hHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 9 MRKVTKGNVTIKLWDLGGQPRFRS--------MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 9 ~~~~~~~~~~~~~~Dt~g~~~~~~--------~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
...+..++.++.+|||||...+.. ....++..+|++++|+|++++.+......+.. ..+.|++++
T Consensus 41 ~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v 113 (157)
T cd04164 41 EESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL-------PADKPIIVV 113 (157)
T ss_pred EEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEE
Confidence 344556678999999999755432 12345778999999999998766554433221 357999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
+||+|+.+.... . ......+++++||+++.|+++++++|.+.+
T Consensus 114 ~nK~D~~~~~~~------~----~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 114 LNKSDLLPDSEL------L----SLLAGKPIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred EEchhcCCcccc------c----cccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 999999764432 1 111234699999999999999999998765
No 170
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.66 E-value=3.5e-15 Score=110.27 Aligned_cols=115 Identities=23% Similarity=0.337 Sum_probs=79.7
Q ss_pred EEEeCC-EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 032598 11 KVTKGN-VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 89 (137)
Q Consensus 11 ~~~~~~-~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 89 (137)
.+...+ ..+++|||||++.|..++...++.+|++++|+|+++....+.. ..+... ...++|+++++||+|+.+.
T Consensus 128 ~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~-e~i~~~----~~~~vPiIVviNKiDl~~~ 202 (587)
T TIGR00487 128 HVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTI-EAISHA----KAANVPIIVAINKIDKPEA 202 (587)
T ss_pred EEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHH-HHHHHH----HHcCCCEEEEEECcccccC
Confidence 344433 3899999999999999999999999999999999875322222 222221 2257899999999999653
Q ss_pred CCHHHHHHHhCCCCC---C-CCceeEEEeecccCCChHHHHHHHHH
Q 032598 90 LSKEDLMEQMGLKSI---T-DREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 90 ~~~~~~~~~~~~~~~---~-~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
....+...+..... . ....+++++||++|+|++++++++..
T Consensus 203 -~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 203 -NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred -CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence 22233333221110 0 11356999999999999999999865
No 171
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.66 E-value=4e-15 Score=112.58 Aligned_cols=117 Identities=23% Similarity=0.316 Sum_probs=82.4
Q ss_pred eEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 032598 10 RKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 89 (137)
Q Consensus 10 ~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 89 (137)
..+..++..++||||||++.|..++...++.+|++++|+|+++....+....+ .. ....++|+++++||+|+...
T Consensus 330 ~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i-~~----a~~~~vPiIVviNKiDl~~a 404 (787)
T PRK05306 330 YQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAI-NH----AKAAGVPIIVAINKIDKPGA 404 (787)
T ss_pred EEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHH-HH----HHhcCCcEEEEEECcccccc
Confidence 34556678999999999999999999999999999999999885322221111 11 12257999999999999653
Q ss_pred CCHHHHHHHhC---CCCCC-CCceeEEEeecccCCChHHHHHHHHHh
Q 032598 90 LSKEDLMEQMG---LKSIT-DREVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 90 ~~~~~~~~~~~---~~~~~-~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
. ...+...+. ..... ...++++++||++|+|+++++++|...
T Consensus 405 ~-~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 405 N-PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred C-HHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhhh
Confidence 2 222222221 11000 123679999999999999999998753
No 172
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.66 E-value=1.2e-17 Score=104.15 Aligned_cols=113 Identities=26% Similarity=0.348 Sum_probs=95.9
Q ss_pred EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC
Q 032598 12 VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS 91 (137)
Q Consensus 12 ~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 91 (137)
+..+++...+|||+|++.+.+....|+++|.+.++||+-+|..||+....|.+.+... ...+|.++|-||+|+.+...
T Consensus 64 v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e--~~~IPtV~vqNKIDlveds~ 141 (246)
T KOG4252|consen 64 VLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKE--TERIPTVFVQNKIDLVEDSQ 141 (246)
T ss_pred hhHHHHHHHHHHhccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHH--hccCCeEEeeccchhhHhhh
Confidence 5567788999999999999999999999999999999999999999999999998764 35799999999999976543
Q ss_pred H-----HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 92 K-----EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 92 ~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
. +.+...+.. .++.+|++..-|+..+|..|++...
T Consensus 142 ~~~~evE~lak~l~~--------RlyRtSvked~NV~~vF~YLaeK~~ 181 (246)
T KOG4252|consen 142 MDKGEVEGLAKKLHK--------RLYRTSVKEDFNVMHVFAYLAEKLT 181 (246)
T ss_pred cchHHHHHHHHHhhh--------hhhhhhhhhhhhhHHHHHHHHHHHH
Confidence 2 333343432 4899999999999999999998764
No 173
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.66 E-value=5.2e-16 Score=114.76 Aligned_cols=123 Identities=17% Similarity=0.128 Sum_probs=85.4
Q ss_pred cceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCC
Q 032598 6 GFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKI 84 (137)
Q Consensus 6 ~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~ 84 (137)
...+..+..++..+.+|||||+++|...+..++.++|++++|+|+++.... +....+.. ... .++| +++++||+
T Consensus 39 d~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~-qT~ehl~i-l~~---lgi~~iIVVlNK~ 113 (581)
T TIGR00475 39 DLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMT-QTGEHLAV-LDL---LGIPHTIVVITKA 113 (581)
T ss_pred EeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcH-HHHHHHHH-HHH---cCCCeEEEEEECC
Confidence 344455666779999999999999998888899999999999999984322 22222222 222 4577 99999999
Q ss_pred CCCCCCCHH----HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 85 DKPEALSKE----DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 85 D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
|+.+..... ++...+..... ...++++++||++|+|+++++.++.+.+.
T Consensus 114 Dlv~~~~~~~~~~ei~~~l~~~~~-~~~~~ii~vSA~tG~GI~eL~~~L~~l~~ 166 (581)
T TIGR00475 114 DRVNEEEIKRTEMFMKQILNSYIF-LKNAKIFKTSAKTGQGIGELKKELKNLLE 166 (581)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCC-CCCCcEEEEeCCCCCCchhHHHHHHHHHH
Confidence 997543222 12222211100 12467999999999999999999887654
No 174
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.65 E-value=8.1e-15 Score=99.59 Aligned_cols=114 Identities=18% Similarity=0.166 Sum_probs=76.2
Q ss_pred EeCCEEEEEEecCCccccH--------HhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCC
Q 032598 13 TKGNVTIKLWDLGGQPRFR--------SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 84 (137)
Q Consensus 13 ~~~~~~~~~~Dt~g~~~~~--------~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 84 (137)
..++.++.+|||||..... .....+++.+|++++|+|+++..+.+ ..++..+. . .+.|+++++||+
T Consensus 44 ~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~--~~i~~~l~-~---~~~p~ilV~NK~ 117 (270)
T TIGR00436 44 TTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG--EFVLTKLQ-N---LKRPVVLTRNKL 117 (270)
T ss_pred EcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH--HHHHHHHH-h---cCCCEEEEEECe
Confidence 3456789999999975321 12345578999999999999876653 22333332 2 468999999999
Q ss_pred CCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 85 DKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 85 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
|+.+..........+... .....++++||++|+|++++++++.+.+..
T Consensus 118 Dl~~~~~~~~~~~~~~~~---~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~ 165 (270)
T TIGR00436 118 DNKFKDKLLPLIDKYAIL---EDFKDIVPISALTGDNTSFLAAFIEVHLPE 165 (270)
T ss_pred eCCCHHHHHHHHHHHHhh---cCCCceEEEecCCCCCHHHHHHHHHHhCCC
Confidence 996432222222222110 001158999999999999999999987643
No 175
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.65 E-value=6e-15 Score=110.83 Aligned_cols=113 Identities=23% Similarity=0.290 Sum_probs=81.2
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHH
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKED 94 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~ 94 (137)
.+..+.+|||||++.|..++..+++.+|++++|+|+++....+... .+..+ ...++|+++++||+|+.... ...
T Consensus 293 ~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E-~I~~~----k~~~iPiIVViNKiDl~~~~-~e~ 366 (742)
T CHL00189 293 ENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIE-AINYI----QAANVPIIVAINKIDKANAN-TER 366 (742)
T ss_pred CceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHH-HHHHH----HhcCceEEEEEECCCccccC-HHH
Confidence 4689999999999999999999999999999999998753332221 12222 22579999999999997532 233
Q ss_pred HHHHhCCC---CCC-CCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 95 LMEQMGLK---SIT-DREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 95 ~~~~~~~~---~~~-~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
+...+... ... ...++++++||++|+|++++++++....
T Consensus 367 v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 367 IKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred HHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 33333211 000 1236799999999999999999998653
No 176
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.65 E-value=9.5e-15 Score=104.99 Aligned_cols=110 Identities=21% Similarity=0.223 Sum_probs=79.2
Q ss_pred eEEEeCCEEEEEEecCCccccHHh--------HHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 10 RKVTKGNVTIKLWDLGGQPRFRSM--------WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 10 ~~~~~~~~~~~~~Dt~g~~~~~~~--------~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
..+..++..+.+|||||....... ...+++.+|++++|+|++++.+.+.. |+..+. ..++|+++|+
T Consensus 244 ~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~----~~~~piIlV~ 317 (442)
T TIGR00450 244 GDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLN----KSKKPFILVL 317 (442)
T ss_pred EEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHh----hCCCCEEEEE
Confidence 346677889999999998655432 23567899999999999988776654 544442 2468999999
Q ss_pred eCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 82 NKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 82 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
||+|+... ....+...+ ...++++||++ .|++++|+.+.+.+.+
T Consensus 318 NK~Dl~~~-~~~~~~~~~--------~~~~~~vSak~-~gI~~~~~~L~~~i~~ 361 (442)
T TIGR00450 318 NKIDLKIN-SLEFFVSSK--------VLNSSNLSAKQ-LKIKALVDLLTQKINA 361 (442)
T ss_pred ECccCCCc-chhhhhhhc--------CCceEEEEEec-CCHHHHHHHHHHHHHH
Confidence 99999654 222222222 23478999997 6999999988887653
No 177
>PRK11058 GTPase HflX; Provisional
Probab=99.65 E-value=1.4e-14 Score=103.66 Aligned_cols=123 Identities=20% Similarity=0.177 Sum_probs=80.4
Q ss_pred CcccceeeEEEeCC-EEEEEEecCCcccc--HHhHHH------HhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCC
Q 032598 3 PTVGFNMRKVTKGN-VTIKLWDLGGQPRF--RSMWER------YCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLN 73 (137)
Q Consensus 3 pt~~~~~~~~~~~~-~~~~~~Dt~g~~~~--~~~~~~------~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 73 (137)
+|.....+.+...+ ..+.+|||+|..+. ...+.. .++.+|++++|+|++++.+.+....+...+ ......
T Consensus 230 tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL-~el~~~ 308 (426)
T PRK11058 230 ATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVL-EEIDAH 308 (426)
T ss_pred CCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHH-HHhccC
Confidence 34555555555444 38899999998432 222332 367899999999999987766654332222 222235
Q ss_pred CCcEEEEeeCCCCCCCCCHHHHHH-HhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 74 GIPLLVLGNKIDKPEALSKEDLME-QMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 74 ~~p~ivv~nK~D~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
++|+++|+||+|+.+... ..... ..+. ..++++||++|+|+++++++|.+.+.
T Consensus 309 ~~pvIiV~NKiDL~~~~~-~~~~~~~~~~-------~~~v~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 309 EIPTLLVMNKIDMLDDFE-PRIDRDEENK-------PIRVWLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred CCCEEEEEEcccCCCchh-HHHHHHhcCC-------CceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 799999999999964321 11111 1111 12588999999999999999998874
No 178
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.65 E-value=1.8e-15 Score=99.90 Aligned_cols=114 Identities=19% Similarity=0.162 Sum_probs=74.8
Q ss_pred ceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCC-----Ch-HHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD-----NL-PVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-----~~-~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
.....+..++.++.+|||||+.++...+...++.+|++++|+|+++.. .. .+...... .... ....|++++
T Consensus 67 ~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~iiiv 143 (219)
T cd01883 67 VGLAKFETEKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHAL-LART--LGVKQLIVA 143 (219)
T ss_pred cceEEEeeCCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHH-HHHH--cCCCeEEEE
Confidence 344556778999999999999888877777788899999999998842 11 11111111 1111 123689999
Q ss_pred eeCCCCCCCC-C---HHHHHH----HhCCCCCCCCceeEEEeecccCCChH
Q 032598 81 GNKIDKPEAL-S---KEDLME----QMGLKSITDREVCCYMISCKNSTNID 123 (137)
Q Consensus 81 ~nK~D~~~~~-~---~~~~~~----~~~~~~~~~~~~~~~~~Sa~~~~~v~ 123 (137)
+||+|+.... . ...+.. .+.........++++++||++|+|++
T Consensus 144 vNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 144 VNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred EEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 9999997321 1 122222 23222223346789999999999986
No 179
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.64 E-value=1.3e-15 Score=109.45 Aligned_cols=117 Identities=19% Similarity=0.079 Sum_probs=76.6
Q ss_pred cceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcEEEEeeCC
Q 032598 6 GFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPLLVLGNKI 84 (137)
Q Consensus 6 ~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~ 84 (137)
......+..++..+.+|||||++++.......++.+|++++|+|+++.++..... .+...+.... ...|+++++||+
T Consensus 74 d~~~~~~~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--~~~~iIVviNK~ 151 (426)
T TIGR00483 74 DVAHWKFETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--GINQLIVAINKM 151 (426)
T ss_pred EEEEEEEccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--CCCeEEEEEECh
Confidence 3445567778899999999999988777777788999999999999864321111 1111122211 235789999999
Q ss_pred CCCCCCC------HHHHHHHhCCCCCCCCceeEEEeecccCCChHH
Q 032598 85 DKPEALS------KEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 124 (137)
Q Consensus 85 D~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 124 (137)
|+.+... ..++.+.+.........++++++||++|+|+++
T Consensus 152 Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 152 DSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred hccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 9964222 122222332222223356799999999999986
No 180
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.64 E-value=8.4e-15 Score=108.43 Aligned_cols=121 Identities=22% Similarity=0.322 Sum_probs=89.5
Q ss_pred eeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 032598 8 NMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 87 (137)
Q Consensus 8 ~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 87 (137)
....+.+++.++++|||||+.+|...+..+++.+|++++|+|+.+. ...+...++..+.. .++|+++++||+|+.
T Consensus 55 ~~~~v~~~~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~----~~ip~IVviNKiD~~ 129 (594)
T TIGR01394 55 KNTAIRYNGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALE----LGLKPIVVINKIDRP 129 (594)
T ss_pred eeEEEEECCEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHH----CCCCEEEEEECCCCC
Confidence 3445778899999999999999999999999999999999999874 23444455555543 468999999999986
Q ss_pred CCCC---HHHHHHHhCCCCCC--CCceeEEEeecccCC----------ChHHHHHHHHHhh
Q 032598 88 EALS---KEDLMEQMGLKSIT--DREVCCYMISCKNST----------NIDTVIDWLVKHS 133 (137)
Q Consensus 88 ~~~~---~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~----------~v~~~~~~i~~~~ 133 (137)
.... ..++.+.+...... ...++++++||++|. |+..+|+.+++.+
T Consensus 130 ~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l 190 (594)
T TIGR01394 130 SARPDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHV 190 (594)
T ss_pred CcCHHHHHHHHHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence 5432 23333333211111 124678999999995 7999999998765
No 181
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.64 E-value=6.3e-15 Score=91.66 Aligned_cols=113 Identities=23% Similarity=0.188 Sum_probs=80.9
Q ss_pred CEEEEEEecCCccccH-------HhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 032598 16 NVTIKLWDLGGQPRFR-------SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~-------~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 88 (137)
...+.+|||||..... .....+++.+|++++|+|+.+..+..... +.... ...+.|+++++||+|+..
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~-~~~~~----~~~~~~~ivv~nK~D~~~ 118 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEK-LLELL----RERGKPVLLVLNKIDLLP 118 (163)
T ss_pred CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHH----HhcCCeEEEEEEccccCC
Confidence 6789999999986543 34445788999999999999987655543 22222 225799999999999976
Q ss_pred CCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 89 ALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
.....................+++++||+++.|++++++++.+.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~~ 163 (163)
T cd00880 119 EEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIEAL 163 (163)
T ss_pred hhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHhhC
Confidence 554443322112222233466799999999999999999998753
No 182
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.64 E-value=4e-15 Score=106.84 Aligned_cols=120 Identities=18% Similarity=0.128 Sum_probs=77.4
Q ss_pred cccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeC
Q 032598 4 TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNK 83 (137)
Q Consensus 4 t~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 83 (137)
|+......+..++.++.+|||||++++.......++.+|++++|+|+++..++.....+...+.... ...|+++++||
T Consensus 71 T~d~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK 148 (425)
T PRK12317 71 TIDLAHKKFETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINK 148 (425)
T ss_pred cceeeeEEEecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEc
Confidence 3344555677788999999999999887766666789999999999987322222112222222221 22468999999
Q ss_pred CCCCCCCC------HHHHHHHhCCCCCCCCceeEEEeecccCCChHHH
Q 032598 84 IDKPEALS------KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 125 (137)
Q Consensus 84 ~D~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 125 (137)
+|+..... ..++...+.........++++++||++|+|++++
T Consensus 149 ~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~ 196 (425)
T PRK12317 149 MDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKK 196 (425)
T ss_pred cccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccc
Confidence 99975221 1223333322222223467999999999999874
No 183
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.63 E-value=4.3e-14 Score=89.39 Aligned_cols=117 Identities=17% Similarity=0.094 Sum_probs=77.5
Q ss_pred EEEeCCEEEEEEecCCccccH-----------HhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEE
Q 032598 11 KVTKGNVTIKLWDLGGQPRFR-----------SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLV 79 (137)
Q Consensus 11 ~~~~~~~~~~~~Dt~g~~~~~-----------~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 79 (137)
.+..++..+.+|||||..... ......++.+|++++|+|++++.+..... +...+.. .+.|+++
T Consensus 44 ~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~----~~~~~ii 118 (174)
T cd01895 44 PFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLR-IAGLILE----EGKALVI 118 (174)
T ss_pred EEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh----cCCCEEE
Confidence 345567789999999974331 11223467899999999999876654432 2222221 4689999
Q ss_pred EeeCCCCCCCC--CHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHh
Q 032598 80 LGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 80 v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
++||+|+.... ........+..........+++++||++++|++++++++.+.
T Consensus 119 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 119 VVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred EEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 99999997652 233333333221111123569999999999999999998764
No 184
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.63 E-value=7.3e-15 Score=96.74 Aligned_cols=132 Identities=24% Similarity=0.383 Sum_probs=93.8
Q ss_pred CCcccceeeEEE--e--CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCC-ChHHHHHHHHHHhcCCCCCCCc
Q 032598 2 IPTVGFNMRKVT--K--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD-NLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 2 ~pt~~~~~~~~~--~--~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p 76 (137)
.||++..+.... . ..+++.+|||+|+++++.++..++.+++++++++|.++.. +.+....|...+..... ...|
T Consensus 35 ~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~-~~~~ 113 (219)
T COG1100 35 PPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAP-DDVP 113 (219)
T ss_pred CCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCC-CCce
Confidence 467774444322 2 2578999999999999999999999999999999999954 44545577777665422 4699
Q ss_pred EEEEeeCCCCCCCCCHHH-HHHHhC-C----------CCCCCCceeEEEeecc--cCCChHHHHHHHHHhhh
Q 032598 77 LLVLGNKIDKPEALSKED-LMEQMG-L----------KSITDREVCCYMISCK--NSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~~~-~~~~~~-~----------~~~~~~~~~~~~~Sa~--~~~~v~~~~~~i~~~~~ 134 (137)
+++++||+|+........ +...+. . .........++++||+ .+.++.++|..+.+.+.
T Consensus 114 iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~ 185 (219)
T COG1100 114 ILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLL 185 (219)
T ss_pred EEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHHHHHH
Confidence 999999999987643211 111110 0 0000112338999999 99999999999998875
No 185
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.62 E-value=1.9e-14 Score=103.63 Aligned_cols=114 Identities=23% Similarity=0.250 Sum_probs=77.7
Q ss_pred ceeeEEEeCCEEEEEEecCCccc--------cHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPR--------FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~--------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.....+...+..+.+|||||... .......+++.+|++++|+|+.+..+..+ .++...+.. .++|++
T Consensus 39 ~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~--~~~~~~l~~---~~~pii 113 (435)
T PRK00093 39 RIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPAD--EEIAKILRK---SNKPVI 113 (435)
T ss_pred ceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCcEE
Confidence 34455667789999999999976 23344556889999999999988544332 222222222 368999
Q ss_pred EEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHh
Q 032598 79 VLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 79 vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
+++||+|..+.. ....+...... -.++++||++|.|++++++++.+.
T Consensus 114 lv~NK~D~~~~~--~~~~~~~~lg~-----~~~~~iSa~~g~gv~~l~~~I~~~ 160 (435)
T PRK00093 114 LVVNKVDGPDEE--ADAYEFYSLGL-----GEPYPISAEHGRGIGDLLDAILEE 160 (435)
T ss_pred EEEECccCccch--hhHHHHHhcCC-----CCCEEEEeeCCCCHHHHHHHHHhh
Confidence 999999975421 22222222111 137999999999999999999873
No 186
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.62 E-value=9.6e-15 Score=108.26 Aligned_cols=110 Identities=25% Similarity=0.304 Sum_probs=77.7
Q ss_pred eeEEEeCCEEEEEEecCCccccHHh------HHHHh--ccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 9 MRKVTKGNVTIKLWDLGGQPRFRSM------WERYC--RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 9 ~~~~~~~~~~~~~~Dt~g~~~~~~~------~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
...+..++.++++|||||+.++... ...++ +.+|++++|+|+++.+. ...+..++.+ .++|++++
T Consensus 33 ~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~ler---~l~l~~ql~~----~~~PiIIV 105 (591)
T TIGR00437 33 EGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLER---NLYLTLQLLE----LGIPMILA 105 (591)
T ss_pred EEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcchh---hHHHHHHHHh----cCCCEEEE
Confidence 3446667788999999999876542 34444 37999999999987532 2222233322 46999999
Q ss_pred eeCCCCCCCCC----HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 81 GNKIDKPEALS----KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 81 ~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
+||+|+.+... .+.+.+.++ ++++++||++|+|++++++++.+..
T Consensus 106 lNK~Dl~~~~~i~~d~~~L~~~lg--------~pvv~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 106 LNLVDEAEKKGIRIDEEKLEERLG--------VPVVPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred EehhHHHHhCCChhhHHHHHHHcC--------CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 99999864432 233334443 3599999999999999999998754
No 187
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.62 E-value=8.2e-15 Score=92.19 Aligned_cols=103 Identities=17% Similarity=0.172 Sum_probs=69.9
Q ss_pred EEecCCccc----cHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHH
Q 032598 21 LWDLGGQPR----FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLM 96 (137)
Q Consensus 21 ~~Dt~g~~~----~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 96 (137)
+|||||... +.......++++|++++|+|+++.+++.. .|+..+ ..++|+++++||+|+.+. ....+.
T Consensus 41 ~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~--~~~~~~-----~~~~~ii~v~nK~Dl~~~-~~~~~~ 112 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPESRLP--AGLLDI-----GVSKRQIAVISKTDMPDA-DVAATR 112 (158)
T ss_pred cccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCcccccC--HHHHhc-----cCCCCeEEEEEccccCcc-cHHHHH
Confidence 699999732 22222334789999999999998765422 233332 136789999999998653 333333
Q ss_pred HHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 97 EQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+.+.... ...+++++||++|+|++++|+.+.+.+.
T Consensus 113 ~~~~~~~---~~~p~~~~Sa~~g~gi~~l~~~l~~~~~ 147 (158)
T PRK15467 113 KLLLETG---FEEPIFELNSHDPQSVQQLVDYLASLTK 147 (158)
T ss_pred HHHHHcC---CCCCEEEEECCCccCHHHHHHHHHHhch
Confidence 3222111 1136999999999999999999998775
No 188
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.61 E-value=1.1e-14 Score=103.90 Aligned_cols=113 Identities=15% Similarity=0.130 Sum_probs=78.2
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHH--
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE-- 93 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-- 93 (137)
+..+++|||||+++|...+......+|++++|+|+++.....+....+..+ ... ...|+++++||+|+.+.....
T Consensus 79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~--gi~~iIVvvNK~Dl~~~~~~~~~ 155 (406)
T TIGR03680 79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EII--GIKNIVIVQNKIDLVSKEKALEN 155 (406)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHc--CCCeEEEEEEccccCCHHHHHHH
Confidence 468999999999999988888889999999999999743112222222222 111 224689999999997543221
Q ss_pred --HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 94 --DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 94 --~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
++...+.. .....++++++||++|+|+++++++|...+
T Consensus 156 ~~~i~~~l~~--~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 156 YEEIKEFVKG--TVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred HHHHHhhhhh--cccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 22222211 012356799999999999999999998754
No 189
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.60 E-value=3.8e-14 Score=107.35 Aligned_cols=120 Identities=13% Similarity=0.060 Sum_probs=81.3
Q ss_pred EEEeCCEEEEEEecCCccc----------cHHh-HHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEE
Q 032598 11 KVTKGNVTIKLWDLGGQPR----------FRSM-WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLV 79 (137)
Q Consensus 11 ~~~~~~~~~~~~Dt~g~~~----------~~~~-~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 79 (137)
.+..++..+.+|||||..+ +..+ ....++.+|++++|+|+++..+.+... +...+.. .++|+++
T Consensus 492 ~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIi 566 (712)
T PRK09518 492 IVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVL 566 (712)
T ss_pred EEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEE
Confidence 4556777889999999632 2111 123478899999999999987776654 3333322 4689999
Q ss_pred EeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 80 LGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 80 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
|+||+|+.+......+...+..........+++++||++|.|++++++.+.+...+
T Consensus 567 V~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 567 VFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred EEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 99999997543333333333211111123457899999999999999999887753
No 190
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.60 E-value=2.8e-14 Score=102.59 Aligned_cols=115 Identities=22% Similarity=0.271 Sum_probs=80.3
Q ss_pred eeeEEEeCCEEEEEEecCCc--------cccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEE
Q 032598 8 NMRKVTKGNVTIKLWDLGGQ--------PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLV 79 (137)
Q Consensus 8 ~~~~~~~~~~~~~~~Dt~g~--------~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 79 (137)
....+..++..+.+|||||. +.+......+++.+|++++|+|+.+..+..+ ..+...++. .++|+++
T Consensus 38 ~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d--~~i~~~l~~---~~~piil 112 (429)
T TIGR03594 38 KYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPED--EEIAKWLRK---SGKPVIL 112 (429)
T ss_pred eEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHH--HHHHHHHHH---hCCCEEE
Confidence 34456677889999999996 3344556667889999999999987544332 222222222 4689999
Q ss_pred EeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 80 LGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 80 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
++||+|+.+..........++.. .++++||++|.|+.++++++.+.+.
T Consensus 113 VvNK~D~~~~~~~~~~~~~lg~~-------~~~~vSa~~g~gv~~ll~~i~~~l~ 160 (429)
T TIGR03594 113 VANKIDGKKEDAVAAEFYSLGFG-------EPIPISAEHGRGIGDLLDAILELLP 160 (429)
T ss_pred EEECccCCcccccHHHHHhcCCC-------CeEEEeCCcCCChHHHHHHHHHhcC
Confidence 99999987543322112222221 4899999999999999999988763
No 191
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.60 E-value=3.6e-14 Score=102.25 Aligned_cols=118 Identities=15% Similarity=0.111 Sum_probs=80.1
Q ss_pred EEeCCEEEEEEecCCccccHH-----------hHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 12 VTKGNVTIKLWDLGGQPRFRS-----------MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 12 ~~~~~~~~~~~Dt~g~~~~~~-----------~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
+..++..+.+|||||..+... ....+++.+|++++|+|+++..+.++.. ....+.. .++|++++
T Consensus 216 ~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~----~~~~~ivv 290 (435)
T PRK00093 216 FERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLR-IAGLALE----AGRALVIV 290 (435)
T ss_pred EEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCcEEEE
Confidence 446778899999999643221 1223578899999999999876655432 2222222 46899999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+||+|+.+.....++...+..........+++++||++|.|++++++.+.+...
T Consensus 291 ~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 291 VNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred EECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999999744333333333322111123457999999999999999999887654
No 192
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=2.6e-14 Score=102.50 Aligned_cols=110 Identities=20% Similarity=0.272 Sum_probs=87.4
Q ss_pred eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH-
Q 032598 14 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK- 92 (137)
Q Consensus 14 ~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~- 92 (137)
++.+.++++||||+.+|......-+.-|+|+++|+|++..-..+.......++. .+..+|.|+||+|++..++.
T Consensus 122 ~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe-----~~L~iIpVlNKIDlp~adpe~ 196 (650)
T KOG0462|consen 122 GQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE-----AGLAIIPVLNKIDLPSADPER 196 (650)
T ss_pred CCceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH-----cCCeEEEeeeccCCCCCCHHH
Confidence 455999999999999999999999999999999999998654444444444442 46778999999999887553
Q ss_pred --HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 93 --EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 93 --~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
.++.+.+..... +++.+||+.|.|++++++++++.+
T Consensus 197 V~~q~~~lF~~~~~-----~~i~vSAK~G~~v~~lL~AII~rV 234 (650)
T KOG0462|consen 197 VENQLFELFDIPPA-----EVIYVSAKTGLNVEELLEAIIRRV 234 (650)
T ss_pred HHHHHHHHhcCCcc-----ceEEEEeccCccHHHHHHHHHhhC
Confidence 345555555433 599999999999999999999876
No 193
>PRK10218 GTP-binding protein; Provisional
Probab=99.59 E-value=5.1e-14 Score=104.37 Aligned_cols=118 Identities=20% Similarity=0.254 Sum_probs=85.6
Q ss_pred EEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC
Q 032598 11 KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL 90 (137)
Q Consensus 11 ~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 90 (137)
.+.+++.++++|||||+.+|...+..+++.+|++++|+|+.+....+ ...++..+.. .++|.++++||+|+....
T Consensus 62 ~i~~~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~q-t~~~l~~a~~----~gip~IVviNKiD~~~a~ 136 (607)
T PRK10218 62 AIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQ-TRFVTKKAFA----YGLKPIVVINKVDRPGAR 136 (607)
T ss_pred EEecCCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHH-HHHHHHHHHH----cCCCEEEEEECcCCCCCc
Confidence 46678999999999999999999999999999999999998753322 2233333322 468999999999987553
Q ss_pred C---HHHHHHHhCCCCC--CCCceeEEEeecccCC----------ChHHHHHHHHHhh
Q 032598 91 S---KEDLMEQMGLKSI--TDREVCCYMISCKNST----------NIDTVIDWLVKHS 133 (137)
Q Consensus 91 ~---~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~----------~v~~~~~~i~~~~ 133 (137)
. ..++.+.+..... ....++++.+||++|. |+..+++.+.+.+
T Consensus 137 ~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i 194 (607)
T PRK10218 137 PDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV 194 (607)
T ss_pred hhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence 3 2344444422111 1134779999999998 5888888887754
No 194
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.59 E-value=2.3e-14 Score=105.85 Aligned_cols=110 Identities=17% Similarity=0.215 Sum_probs=75.5
Q ss_pred EEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC------
Q 032598 18 TIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS------ 91 (137)
Q Consensus 18 ~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~------ 91 (137)
.+.+|||||++.+..++..+++.+|++++|+|+++....+.. ..+..+ . ..++|+++++||+|+.....
T Consensus 70 ~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~-e~i~~l-~---~~~vpiIVv~NK~Dl~~~~~~~~~~~ 144 (590)
T TIGR00491 70 GLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQ-EALNIL-R---MYKTPFVVAANKIDRIPGWRSHEGRP 144 (590)
T ss_pred cEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHH-HHHHHH-H---HcCCCEEEEEECCCccchhhhccCch
Confidence 489999999999999999999999999999999874332221 111212 2 24689999999999864210
Q ss_pred --------HHHH-----------HHHhCCCCC----------CCCceeEEEeecccCCChHHHHHHHHHh
Q 032598 92 --------KEDL-----------MEQMGLKSI----------TDREVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 92 --------~~~~-----------~~~~~~~~~----------~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
...+ ...+..... .....+++++||++|+|+++++.++...
T Consensus 145 f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l 214 (590)
T TIGR00491 145 FMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL 214 (590)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence 0001 111111111 1235789999999999999999988753
No 195
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.59 E-value=4.2e-14 Score=94.32 Aligned_cols=122 Identities=19% Similarity=0.206 Sum_probs=87.3
Q ss_pred ceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 86 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 86 (137)
.....+..++.++.+|||||+.++...+..+++.+|++++|+|+++.... ....++..+.. .++|+++++||+|+
T Consensus 54 ~~~~~~~~~~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~ 128 (237)
T cd04168 54 SAVASFQWEDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDR 128 (237)
T ss_pred eeeEEEEECCEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECccc
Confidence 44556778899999999999999999999999999999999999986443 22333333322 46899999999998
Q ss_pred CCCCC---HHHHHHHhCC------------------------------------------CCC--------------CCC
Q 032598 87 PEALS---KEDLMEQMGL------------------------------------------KSI--------------TDR 107 (137)
Q Consensus 87 ~~~~~---~~~~~~~~~~------------------------------------------~~~--------------~~~ 107 (137)
..... ..++.+.++. ... ...
T Consensus 129 ~~a~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~ 208 (237)
T cd04168 129 AGADLEKVYQEIKEKLSSDIVPMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRK 208 (237)
T ss_pred cCCCHHHHHHHHHHHHCCCeEEEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCC
Confidence 75321 1222222221 000 123
Q ss_pred ceeEEEeecccCCChHHHHHHHHHhh
Q 032598 108 EVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 108 ~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
-++++..||.++.|+..+++.+.+.+
T Consensus 209 ~~Pv~~gsa~~~~Gv~~ll~~~~~~~ 234 (237)
T cd04168 209 VFPVYHGSALKGIGIEELLEGITKLF 234 (237)
T ss_pred eEEEEEccccCCcCHHHHHHHHHHhc
Confidence 46677889999999999999998765
No 196
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.58 E-value=6.7e-14 Score=106.01 Aligned_cols=111 Identities=23% Similarity=0.203 Sum_probs=75.3
Q ss_pred EEeCCEEEEEEecCCccc--------cHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeC
Q 032598 12 VTKGNVTIKLWDLGGQPR--------FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNK 83 (137)
Q Consensus 12 ~~~~~~~~~~~Dt~g~~~--------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 83 (137)
...++..+.+|||||.+. +......+++.+|++++|+|+++.....+. .+...+ . ..++|+++|+||
T Consensus 318 ~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~-~i~~~L-r---~~~~pvIlV~NK 392 (712)
T PRK09518 318 AEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDE-RIVRML-R---RAGKPVVLAVNK 392 (712)
T ss_pred EEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHH-HHHHHH-H---hcCCCEEEEEEC
Confidence 345678999999999753 334455668899999999999874322211 232323 2 257999999999
Q ss_pred CCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 84 IDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 84 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+|+..... ...+.+... .. ..+++||++|.|++++++++++.+.
T Consensus 393 ~D~~~~~~--~~~~~~~lg-~~----~~~~iSA~~g~GI~eLl~~i~~~l~ 436 (712)
T PRK09518 393 IDDQASEY--DAAEFWKLG-LG----EPYPISAMHGRGVGDLLDEALDSLK 436 (712)
T ss_pred cccccchh--hHHHHHHcC-CC----CeEEEECCCCCCchHHHHHHHHhcc
Confidence 99864322 122222211 11 2578999999999999999998764
No 197
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=3.4e-15 Score=93.88 Aligned_cols=127 Identities=20% Similarity=0.342 Sum_probs=101.7
Q ss_pred CCCcccceeeEEE----eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMRKVT----KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~~~~----~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
|.||+|.....+. .+.+++..|||+|++.+..+...++-++.+.+++||.+..-++..+.+|...+... ..++|
T Consensus 39 y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv--~~NiP 116 (216)
T KOG0096|consen 39 YPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRV--RENIP 116 (216)
T ss_pred ccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHH--hcCCC
Confidence 5688886665533 23599999999999999999999999999999999999988899999999888765 35699
Q ss_pred EEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 77 LLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+++.+||.|..+.....+- ......++++++++||+++.|.+.-|-|+++.+.
T Consensus 117 iv~cGNKvDi~~r~~k~k~-----v~~~rkknl~y~~iSaksn~NfekPFl~LarKl~ 169 (216)
T KOG0096|consen 117 IVLCGNKVDIKARKVKAKP-----VSFHRKKNLQYYEISAKSNYNFERPFLWLARKLT 169 (216)
T ss_pred eeeeccceecccccccccc-----ceeeecccceeEEeecccccccccchHHHhhhhc
Confidence 9999999998654321111 1122234678999999999999999999998875
No 198
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.57 E-value=1.5e-14 Score=107.55 Aligned_cols=113 Identities=18% Similarity=0.198 Sum_probs=77.8
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCCCCCCHH
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDKPEALSKE 93 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~ 93 (137)
++..+.+|||||+++|...+...+..+|++++|+|+++.... +....+. +... .++| +++++||+|+.+.....
T Consensus 49 ~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~-qT~ehl~-il~~---lgi~~iIVVlNKiDlv~~~~~~ 123 (614)
T PRK10512 49 DGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMA-QTREHLA-ILQL---TGNPMLTVALTKADRVDEARIA 123 (614)
T ss_pred CCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcH-HHHHHHH-HHHH---cCCCeEEEEEECCccCCHHHHH
Confidence 456789999999999988888889999999999999874322 2222222 2222 3455 57999999997543222
Q ss_pred ----HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 94 ----DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 94 ----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
++.+.+... .....+++++||++|+|++++++.|.+...
T Consensus 124 ~v~~ei~~~l~~~--~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~ 166 (614)
T PRK10512 124 EVRRQVKAVLREY--GFAEAKLFVTAATEGRGIDALREHLLQLPE 166 (614)
T ss_pred HHHHHHHHHHHhc--CCCCCcEEEEeCCCCCCCHHHHHHHHHhhc
Confidence 222222211 112356999999999999999999987654
No 199
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.57 E-value=1.3e-13 Score=97.81 Aligned_cols=131 Identities=17% Similarity=0.138 Sum_probs=86.4
Q ss_pred CcccceeeEEEeCC-EEEEEEecCCccccH-------HhHHHHhccCCEEEEEEeCC---CCCChHHHHHHHHHHhcCC-
Q 032598 3 PTVGFNMRKVTKGN-VTIKLWDLGGQPRFR-------SMWERYCRAVSAIVYVVDAA---DYDNLPVSRSELHDLLSKP- 70 (137)
Q Consensus 3 pt~~~~~~~~~~~~-~~~~~~Dt~g~~~~~-------~~~~~~~~~~~~~i~v~d~~---~~~~~~~~~~~~~~~~~~~- 70 (137)
+|...+...+...+ .++.++||||..... ......++.++++++|+|++ ..++.+....+...+....
T Consensus 192 TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~ 271 (390)
T PRK12298 192 TTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSP 271 (390)
T ss_pred CccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhh
Confidence 34455566666554 469999999975321 12223478899999999988 3455565666666665431
Q ss_pred CCCCCcEEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 71 SLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 71 ~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
...+.|+++++||+|+.......+....+... . .....++++||++++|+++++++|.+.+.+
T Consensus 272 ~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~-~-~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 272 KLAEKPRWLVFNKIDLLDEEEAEERAKAIVEA-L-GWEGPVYLISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred hhcCCCEEEEEeCCccCChHHHHHHHHHHHHH-h-CCCCCEEEEECCCCcCHHHHHHHHHHHhhh
Confidence 22468999999999997543333222222110 0 011248999999999999999999988754
No 200
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.57 E-value=5.5e-14 Score=100.47 Aligned_cols=113 Identities=15% Similarity=0.133 Sum_probs=75.2
Q ss_pred EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHH---
Q 032598 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE--- 93 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--- 93 (137)
..+++|||||++++..........+|++++|+|++++....+....+..+ ... ...|+++++||+|+.+.....
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l-~~~--~i~~iiVVlNK~Dl~~~~~~~~~~ 161 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMAL-DII--GIKNIVIVQNKIDLVSKERALENY 161 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHH-HHc--CCCcEEEEEEeeccccchhHHHHH
Confidence 68999999999988776666667789999999999753111111222222 111 224689999999997543321
Q ss_pred -HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 94 -DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 94 -~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
++...+... .....+++++||++|+|++++++.|.+.+.
T Consensus 162 ~~i~~~l~~~--~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 162 EQIKEFVKGT--VAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred HHHHHHhccc--cCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 222222211 122467999999999999999999988653
No 201
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.56 E-value=1e-13 Score=89.74 Aligned_cols=110 Identities=20% Similarity=0.285 Sum_probs=73.9
Q ss_pred CEEEEEEecCCc----------cccHHhHHHHhccC---CEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEee
Q 032598 16 NVTIKLWDLGGQ----------PRFRSMWERYCRAV---SAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGN 82 (137)
Q Consensus 16 ~~~~~~~Dt~g~----------~~~~~~~~~~~~~~---~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 82 (137)
+.++.+|||||. +.+......+++.+ +++++|+|.+++.+... .++...+. ..++|+++++|
T Consensus 69 ~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~---~~~~~~iiv~n 143 (196)
T PRK00454 69 NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLK---EYGIPVLIVLT 143 (196)
T ss_pred CCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHH--HHHHHHHH---HcCCcEEEEEE
Confidence 468999999994 34445556666654 67888899877544332 22222222 24689999999
Q ss_pred CCCCCCCCCHHH----HHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 83 KIDKPEALSKED----LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 83 K~D~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
|+|+.+....+. +...+... ...++++||++++|++++++.|.+.+++
T Consensus 144 K~Dl~~~~~~~~~~~~i~~~l~~~-----~~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 144 KADKLKKGERKKQLKKVRKALKFG-----DDEVILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhc-----CCceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 999975433322 22333211 3468999999999999999999988764
No 202
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.56 E-value=7.5e-14 Score=90.58 Aligned_cols=107 Identities=16% Similarity=0.085 Sum_probs=72.7
Q ss_pred EEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCCCC
Q 032598 11 KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDKPEA 89 (137)
Q Consensus 11 ~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~ 89 (137)
.+..++.++.++||||+.++.......+..+|++++|+|+...-..+. ...+..+. . .++| +++++||+|+...
T Consensus 59 ~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~-~---~~~~~iIvviNK~D~~~~ 133 (195)
T cd01884 59 EYETANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQT-REHLLLAR-Q---VGVPYIVVFLNKADMVDD 133 (195)
T ss_pred EecCCCeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHH-H---cCCCcEEEEEeCCCCCCc
Confidence 455667899999999999888877888899999999999987432221 12222222 1 4566 7789999998642
Q ss_pred CCH-----HHHHHHhCCCCCCCCceeEEEeecccCCCh
Q 032598 90 LSK-----EDLMEQMGLKSITDREVCCYMISCKNSTNI 122 (137)
Q Consensus 90 ~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 122 (137)
... .++...+.........++++++||++|.|.
T Consensus 134 ~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 134 EELLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCC
Confidence 221 234444433333334678999999999985
No 203
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=2.2e-14 Score=88.52 Aligned_cols=133 Identities=35% Similarity=0.583 Sum_probs=111.2
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
..||.-.....+..++.+++-.|.+|+...+..|..|+..++++++.+|+.|.+.+.+.+..++.++........|+++.
T Consensus 48 hvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lil 127 (193)
T KOG0077|consen 48 HVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLIL 127 (193)
T ss_pred cCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceee
Confidence 36888888888888999999999999999999999999999999999999999999999999999888777789999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCC------------CCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSI------------TDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
+||+|.......+++...++.... ..+-...+.||...+.+.-+.|.|+...+
T Consensus 128 gnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 128 GNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
T ss_pred cccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEccCccceeeeehhhhc
Confidence 999999887766665555532111 12235578899999999889999887654
No 204
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.54 E-value=2.3e-13 Score=89.25 Aligned_cols=112 Identities=14% Similarity=0.079 Sum_probs=70.2
Q ss_pred eeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 032598 9 MRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 9 ~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 88 (137)
...+..++.++.+|||||++++...+...++.+|++++|+|+++....+. .....+.... ...++++++||+|+..
T Consensus 69 ~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~--~~~~~~~~~~--~~~~iIvviNK~D~~~ 144 (208)
T cd04166 69 YRYFSTPKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT--RRHSYILSLL--GIRHVVVAVNKMDLVD 144 (208)
T ss_pred eeEEecCCceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH--HHHHHHHHHc--CCCcEEEEEEchhccc
Confidence 34456678899999999999887767778899999999999987532221 1111222211 2245788999999864
Q ss_pred CCC--HHHHHHHhCC--CCCCCCceeEEEeecccCCChHH
Q 032598 89 ALS--KEDLMEQMGL--KSITDREVCCYMISCKNSTNIDT 124 (137)
Q Consensus 89 ~~~--~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~v~~ 124 (137)
... ...+...+.. ...+....+++++||++|.|+.+
T Consensus 145 ~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 145 YSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 321 1111111110 00111234689999999999875
No 205
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.54 E-value=4.5e-13 Score=84.04 Aligned_cols=114 Identities=22% Similarity=0.234 Sum_probs=75.6
Q ss_pred EEeCCEEEEEEecCCccccHH--------hHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeC
Q 032598 12 VTKGNVTIKLWDLGGQPRFRS--------MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNK 83 (137)
Q Consensus 12 ~~~~~~~~~~~Dt~g~~~~~~--------~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 83 (137)
+..++..+.+|||||...... .....+..+|++++|+|++++.+ +...+....... .+.|+++++||
T Consensus 46 ~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~--~~~~~~~~~~~~---~~~~~iiv~nK 120 (168)
T cd04163 46 YTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIG--EGDEFILELLKK---SKTPVILVLNK 120 (168)
T ss_pred EEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccC--chHHHHHHHHHH---hCCCEEEEEEc
Confidence 345568899999999754332 33445788999999999998622 222222222221 35899999999
Q ss_pred CCCCCC-CCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 84 IDKPEA-LSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 84 ~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
+|+... ....+....+... ....+++++|++++.|+++++++|.+.+
T Consensus 121 ~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~~~~~~~l~~~l~~~~ 168 (168)
T cd04163 121 IDLVKDKEDLLPLLEKLKEL---GPFAEIFPISALKGENVDELLEEIVKYL 168 (168)
T ss_pred hhccccHHHHHHHHHHHHhc---cCCCceEEEEeccCCChHHHHHHHHhhC
Confidence 999742 2233333333221 1234689999999999999999998753
No 206
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.54 E-value=1.2e-13 Score=91.35 Aligned_cols=115 Identities=22% Similarity=0.184 Sum_probs=77.8
Q ss_pred EEeCCEEEEEEecCCccccHHhHHHHhc--cCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 032598 12 VTKGNVTIKLWDLGGQPRFRSMWERYCR--AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 89 (137)
Q Consensus 12 ~~~~~~~~~~~Dt~g~~~~~~~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 89 (137)
+..++..+++.||||++++.......+. .+|++++|+|+........ ...+..+. ..++|+++++||+|+.+.
T Consensus 79 ~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d-~~~l~~l~----~~~ip~ivvvNK~D~~~~ 153 (224)
T cd04165 79 CEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT-KEHLGLAL----ALNIPVFVVVTKIDLAPA 153 (224)
T ss_pred eeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH-HHHHHHHH----HcCCCEEEEEECccccCH
Confidence 4456789999999999998776665564 6899999999987543221 22222222 256899999999998654
Q ss_pred CCHH----HHHHHhCCCCC---------------------CCCceeEEEeecccCCChHHHHHHHHH
Q 032598 90 LSKE----DLMEQMGLKSI---------------------TDREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 90 ~~~~----~~~~~~~~~~~---------------------~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
.... ++...++.... .....+++.+||.+|+|++++...|..
T Consensus 154 ~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 154 NILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 3322 33334432110 122457899999999999999887754
No 207
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.53 E-value=3.5e-13 Score=89.73 Aligned_cols=121 Identities=21% Similarity=0.177 Sum_probs=78.8
Q ss_pred cccceeeEEEeCCEEEEEEecCCccccH-------HhHHHHhccCCEEEEEEeCCCCCC-hHHHHHHHHH----------
Q 032598 4 TVGFNMRKVTKGNVTIKLWDLGGQPRFR-------SMWERYCRAVSAIVYVVDAADYDN-LPVSRSELHD---------- 65 (137)
Q Consensus 4 t~~~~~~~~~~~~~~~~~~Dt~g~~~~~-------~~~~~~~~~~~~~i~v~d~~~~~~-~~~~~~~~~~---------- 65 (137)
|.......+..++.++++|||||..... ......++.+|++++|+|+++... .+.+...++.
T Consensus 34 T~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~ 113 (233)
T cd01896 34 TLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKPEGHREILERELEGVGIRLNKRPP 113 (233)
T ss_pred cccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcchhHHHHHHHHHHHcCceecCCCC
Confidence 4445555667788999999999975332 223456889999999999987542 2222222210
Q ss_pred ------------------------------HhcC------------------------CCCCCCcEEEEeeCCCCCCCCC
Q 032598 66 ------------------------------LLSK------------------------PSLNGIPLLVLGNKIDKPEALS 91 (137)
Q Consensus 66 ------------------------------~~~~------------------------~~~~~~p~ivv~nK~D~~~~~~ 91 (137)
+++. .+...+|+++++||+|+.+...
T Consensus 114 ~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~ 193 (233)
T cd01896 114 NITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEE 193 (233)
T ss_pred eEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCCCHHHHHHHHhCCceEeeEEEEEECccCCCHHH
Confidence 0000 0113479999999999964322
Q ss_pred HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 92 KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
.. .+.. ...++++||++|.|++++++.+.+.+.
T Consensus 194 ~~----~~~~------~~~~~~~SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 194 LD----LLAR------QPNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred HH----HHhc------CCCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 22 1211 124899999999999999999988763
No 208
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.53 E-value=8.1e-14 Score=98.70 Aligned_cols=110 Identities=23% Similarity=0.300 Sum_probs=88.2
Q ss_pred eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--
Q 032598 14 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-- 91 (137)
Q Consensus 14 ~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-- 91 (137)
++.+.++++||||+-+|.-....-+..|.|.++|+|++..-.-+.+...+.++. .+..++-|.||+|++...+
T Consensus 73 g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle-----~~LeIiPViNKIDLP~Adper 147 (603)
T COG0481 73 GETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPAADPER 147 (603)
T ss_pred CCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH-----cCcEEEEeeecccCCCCCHHH
Confidence 356999999999999998777778889999999999998644444445544553 4577899999999987754
Q ss_pred -HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 92 -KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 92 -~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
..++.+.++..... .+.+|||+|.|++++++.|++.+
T Consensus 148 vk~eIe~~iGid~~d-----av~~SAKtG~gI~~iLe~Iv~~i 185 (603)
T COG0481 148 VKQEIEDIIGIDASD-----AVLVSAKTGIGIEDVLEAIVEKI 185 (603)
T ss_pred HHHHHHHHhCCCcch-----heeEecccCCCHHHHHHHHHhhC
Confidence 35677777766544 79999999999999999999875
No 209
>PRK00089 era GTPase Era; Reviewed
Probab=99.53 E-value=4.4e-13 Score=92.07 Aligned_cols=113 Identities=19% Similarity=0.169 Sum_probs=75.8
Q ss_pred eCCEEEEEEecCCccccH--------HhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCC
Q 032598 14 KGNVTIKLWDLGGQPRFR--------SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 85 (137)
Q Consensus 14 ~~~~~~~~~Dt~g~~~~~--------~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 85 (137)
.++.++.+|||||..... ......+..+|++++|+|+++..+ ....++...+. ..+.|+++++||+|
T Consensus 50 ~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~--~~~~~i~~~l~---~~~~pvilVlNKiD 124 (292)
T PRK00089 50 EDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIG--PGDEFILEKLK---KVKTPVILVLNKID 124 (292)
T ss_pred cCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCC--hhHHHHHHHHh---hcCCCEEEEEECCc
Confidence 356899999999975432 223345778999999999988322 22223323322 24689999999999
Q ss_pred CCCC-CCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 86 KPEA-LSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 86 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+... .........+... .....++++||+++.|++++++++.+.+.
T Consensus 125 l~~~~~~l~~~~~~l~~~---~~~~~i~~iSA~~~~gv~~L~~~L~~~l~ 171 (292)
T PRK00089 125 LVKDKEELLPLLEELSEL---MDFAEIVPISALKGDNVDELLDVIAKYLP 171 (292)
T ss_pred CCCCHHHHHHHHHHHHhh---CCCCeEEEecCCCCCCHHHHHHHHHHhCC
Confidence 9732 2223333333211 11346899999999999999999998764
No 210
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.52 E-value=9.2e-14 Score=96.07 Aligned_cols=135 Identities=18% Similarity=0.318 Sum_probs=106.5
Q ss_pred CCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCC----------ChHHHHHHHHHHhcCCC
Q 032598 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD----------NLPVSRSELHDLLSKPS 71 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------~~~~~~~~~~~~~~~~~ 71 (137)
.||.|+....+..++.++.+.|++||...+..|.+++.++++++|++++++.+ .+.+...+++.+.....
T Consensus 180 ~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~ 259 (354)
T KOG0082|consen 180 VPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKW 259 (354)
T ss_pred cCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcc
Confidence 58999999999999999999999999999999999999999999999998743 24556678888888888
Q ss_pred CCCCcEEEEeeCCCCCCCC----C-------------H----HHHHHHhCCCCC-CCCceeEEEeecccCCChHHHHHHH
Q 032598 72 LNGIPLLVLGNKIDKPEAL----S-------------K----EDLMEQMGLKSI-TDREVCCYMISCKNSTNIDTVIDWL 129 (137)
Q Consensus 72 ~~~~p~ivv~nK~D~~~~~----~-------------~----~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~~~~~i 129 (137)
..+.++|++.||.|+-+.. + . ..+...+..... ..+.+.++.++|.+.++|+.+|..+
T Consensus 260 F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av 339 (354)
T KOG0082|consen 260 FANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAV 339 (354)
T ss_pred cccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHH
Confidence 8899999999999975321 1 0 112222211111 1256778899999999999999999
Q ss_pred HHhhhhc
Q 032598 130 VKHSKSK 136 (137)
Q Consensus 130 ~~~~~~~ 136 (137)
.+.+.++
T Consensus 340 ~d~Ii~~ 346 (354)
T KOG0082|consen 340 TDTIIQN 346 (354)
T ss_pred HHHHHHH
Confidence 9888754
No 211
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.52 E-value=2.2e-13 Score=84.95 Aligned_cols=111 Identities=29% Similarity=0.363 Sum_probs=77.8
Q ss_pred cccceeeEEEeCCEEEEEEecCCcccc------HHhHHHHh--ccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCC
Q 032598 4 TVGFNMRKVTKGNVTIKLWDLGGQPRF------RSMWERYC--RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGI 75 (137)
Q Consensus 4 t~~~~~~~~~~~~~~~~~~Dt~g~~~~------~~~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (137)
|+......+..++..+.++|+||..+. ......++ ...|++++|+|++. +++......++.. .++
T Consensus 34 Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~---l~r~l~l~~ql~e----~g~ 106 (156)
T PF02421_consen 34 TVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATN---LERNLYLTLQLLE----LGI 106 (156)
T ss_dssp SSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGG---HHHHHHHHHHHHH----TTS
T ss_pred CeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCC---HHHHHHHHHHHHH----cCC
Confidence 444555667788899999999995322 23444454 57999999999987 3433344445543 469
Q ss_pred cEEEEeeCCCCCCCC----CHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHH
Q 032598 76 PLLVLGNKIDKPEAL----SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWL 129 (137)
Q Consensus 76 p~ivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 129 (137)
|+++++||+|..... ....+.+.++. +++++||++++|++++++.|
T Consensus 107 P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~--------pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 107 PVVVVLNKMDEAERKGIEIDAEKLSERLGV--------PVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp SEEEEEETHHHHHHTTEEE-HHHHHHHHTS---------EEEEBTTTTBTHHHHHHHH
T ss_pred CEEEEEeCHHHHHHcCCEECHHHHHHHhCC--------CEEEEEeCCCcCHHHHHhhC
Confidence 999999999986543 34677777765 49999999999999999875
No 212
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=1.6e-12 Score=83.50 Aligned_cols=130 Identities=28% Similarity=0.350 Sum_probs=95.1
Q ss_pred CcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhc---cCCEEEEEEeCCC-CCChHHHHHHHHHHhcCC--CCCCCc
Q 032598 3 PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCR---AVSAIVYVVDAAD-YDNLPVSRSELHDLLSKP--SLNGIP 76 (137)
Q Consensus 3 pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~---~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~--~~~~~p 76 (137)
|+++.|...+..+.-..+++|.||+.+.+.....+++ .+-++|||+|+.. .....+....+-.++-.. ....+|
T Consensus 68 tSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~ 147 (238)
T KOG0090|consen 68 TSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPP 147 (238)
T ss_pred eeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCC
Confidence 4455677777777777999999999999988888887 7999999999875 345566666666555443 245799
Q ss_pred EEEEeeCCCCCCCCCHHHHHHHhCC--------------C---------------------CCCCCceeEEEeecccCCC
Q 032598 77 LLVLGNKIDKPEALSKEDLMEQMGL--------------K---------------------SITDREVCCYMISCKNSTN 121 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~~~~~~~~~~--------------~---------------------~~~~~~~~~~~~Sa~~~~~ 121 (137)
+++.+||.|+....+.+.+.+.+.. . .....++.|.++|++++ +
T Consensus 148 vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~ 226 (238)
T KOG0090|consen 148 VLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-E 226 (238)
T ss_pred EEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccchhhcccceeEEeecccCcC-C
Confidence 9999999999877665433333310 0 00124677899999988 8
Q ss_pred hHHHHHHHHHhh
Q 032598 122 IDTVIDWLVKHS 133 (137)
Q Consensus 122 v~~~~~~i~~~~ 133 (137)
+++.-+||.+.+
T Consensus 227 i~~~~~wi~~~l 238 (238)
T KOG0090|consen 227 IDQWESWIREAL 238 (238)
T ss_pred hHHHHHHHHHhC
Confidence 999999998753
No 213
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=4.2e-13 Score=96.22 Aligned_cols=113 Identities=23% Similarity=0.315 Sum_probs=83.0
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHH
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKED 94 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~ 94 (137)
+.-.+.|+||||++.|..++....+-+|.+++|+++++.--.+.. +.+ +.....+.|+++..||+|+.+..+ ..
T Consensus 53 ~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTi----EAI-~hak~a~vP~iVAiNKiDk~~~np-~~ 126 (509)
T COG0532 53 KIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTI----EAI-NHAKAAGVPIVVAINKIDKPEANP-DK 126 (509)
T ss_pred CCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHH----HHH-HHHHHCCCCEEEEEecccCCCCCH-HH
Confidence 346899999999999999999999999999999999985332221 122 122237899999999999986543 33
Q ss_pred HHHHhCCCCCC----CCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 95 LMEQMGLKSIT----DREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 95 ~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
....+...... .....++++||++|+|+.+|+..+.-..
T Consensus 127 v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~a 169 (509)
T COG0532 127 VKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLLA 169 (509)
T ss_pred HHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHHH
Confidence 33333222221 3457899999999999999999887554
No 214
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.49 E-value=1.3e-12 Score=95.87 Aligned_cols=78 Identities=23% Similarity=0.254 Sum_probs=59.7
Q ss_pred eeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 032598 8 NMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 87 (137)
Q Consensus 8 ~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 87 (137)
....+.+++.++++|||||+.++......+++.+|++++|+|+++.... ....++... ...++|+++++||+|+.
T Consensus 70 ~~~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~----~~~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 70 SVMQFPYRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVC----RLRDTPIFTFINKLDRD 144 (526)
T ss_pred eeEEEEECCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHH----HhcCCCEEEEEECCccc
Confidence 3345778899999999999999988888889999999999999875322 222333322 22579999999999986
Q ss_pred CCC
Q 032598 88 EAL 90 (137)
Q Consensus 88 ~~~ 90 (137)
...
T Consensus 145 ~a~ 147 (526)
T PRK00741 145 GRE 147 (526)
T ss_pred ccC
Confidence 543
No 215
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.49 E-value=4e-13 Score=82.28 Aligned_cols=124 Identities=21% Similarity=0.371 Sum_probs=92.3
Q ss_pred cccceee--E--EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEE
Q 032598 4 TVGFNMR--K--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLV 79 (137)
Q Consensus 4 t~~~~~~--~--~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 79 (137)
|.|.|+- + +.+..+.+.+||.+|++++..+.+-.++.+.+++|+||.+.+.++..+..|..+..+.. ...+| ++
T Consensus 52 ~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~N-ktAiP-il 129 (205)
T KOG1673|consen 52 TLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLN-KTAIP-IL 129 (205)
T ss_pred HhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccC-Cccce-EE
Confidence 3455543 3 33456888999999999999999999999999999999999999999999999987753 36688 67
Q ss_pred EeeCCCCCCCCCHH------HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 80 LGNKIDKPEALSKE------DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 80 v~nK~D~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
+++|.|.--..+.+ .....+.. --+...++||+....|+.+.|+-+...+
T Consensus 130 vGTKyD~fi~lp~e~Q~~I~~qar~YAk----~mnAsL~F~Sts~sINv~KIFK~vlAkl 185 (205)
T KOG1673|consen 130 VGTKYDLFIDLPPELQETISRQARKYAK----VMNASLFFCSTSHSINVQKIFKIVLAKL 185 (205)
T ss_pred eccchHhhhcCCHHHHHHHHHHHHHHHH----HhCCcEEEeeccccccHHHHHHHHHHHH
Confidence 89999964333321 11111110 0123489999999999999999876654
No 216
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.49 E-value=6.9e-13 Score=98.34 Aligned_cols=108 Identities=19% Similarity=0.241 Sum_probs=73.5
Q ss_pred EEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-------
Q 032598 19 IKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS------- 91 (137)
Q Consensus 19 ~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~------- 91 (137)
+.+|||||++.|..++...++.+|++++|+|+++....+. ...+..+ . ..++|+++++||+|+.....
T Consensus 73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt-~e~i~~~-~---~~~vpiIvviNK~D~~~~~~~~~~~~~ 147 (586)
T PRK04004 73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQT-IEAINIL-K---RRKTPFVVAANKIDRIPGWKSTEDAPF 147 (586)
T ss_pred EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhH-HHHHHHH-H---HcCCCEEEEEECcCCchhhhhhcCchH
Confidence 7899999999999999888999999999999987322111 1112222 2 25789999999999852110
Q ss_pred -----------H-------HHHHHHhCCCCCC----------CCceeEEEeecccCCChHHHHHHHHH
Q 032598 92 -----------K-------EDLMEQMGLKSIT----------DREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 92 -----------~-------~~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
. .++...+...... ...++++++||++|+|+++++..+..
T Consensus 148 ~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 148 LESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 0 0111222211111 23577999999999999999988864
No 217
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.48 E-value=3.9e-13 Score=86.15 Aligned_cols=98 Identities=21% Similarity=0.307 Sum_probs=63.5
Q ss_pred EEEEEecCCcc----------ccHHhHHHHhcc---CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCC
Q 032598 18 TIKLWDLGGQP----------RFRSMWERYCRA---VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 84 (137)
Q Consensus 18 ~~~~~Dt~g~~----------~~~~~~~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 84 (137)
.+.+|||||.. .+......+++. ++++++|+|++...+..... ... .... .++|+++++||+
T Consensus 65 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~-~~~~---~~~pviiv~nK~ 139 (179)
T TIGR03598 65 GFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLE-MLE-WLRE---RGIPVLIVLTKA 139 (179)
T ss_pred cEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHH-HHH-HHHH---cCCCEEEEEECc
Confidence 79999999952 344444556654 57999999998754443331 222 2222 468999999999
Q ss_pred CCCCCCCH----HHHHHHhCCCCCCCCceeEEEeecccCCChH
Q 032598 85 DKPEALSK----EDLMEQMGLKSITDREVCCYMISCKNSTNID 123 (137)
Q Consensus 85 D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 123 (137)
|+...... .++.+.++.. ...+.++++||++|+|++
T Consensus 140 D~~~~~~~~~~~~~i~~~l~~~---~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 140 DKLKKSELNKQLKKIKKALKKD---ADDPSVQLFSSLKKTGID 179 (179)
T ss_pred ccCCHHHHHHHHHHHHHHHhhc---cCCCceEEEECCCCCCCC
Confidence 99754322 3334444321 123469999999999974
No 218
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.48 E-value=8.3e-13 Score=95.24 Aligned_cols=115 Identities=13% Similarity=0.111 Sum_probs=78.1
Q ss_pred ccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChH-------HHHHHHHHHhcCCCCCCCc-
Q 032598 5 VGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLP-------VSRSELHDLLSKPSLNGIP- 76 (137)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~-------~~~~~~~~~~~~~~~~~~p- 76 (137)
+......+..++..++++||||+++|...+...+..+|++++|+|+++. .++ +..+.+..+ . ..++|
T Consensus 73 i~~~~~~~~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~-~---~~gi~~ 147 (447)
T PLN00043 73 IDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLA-F---TLGVKQ 147 (447)
T ss_pred EEEEEEEecCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHH-H---HcCCCc
Confidence 3344455677889999999999999999999999999999999999873 221 222222222 1 14564
Q ss_pred EEEEeeCCCCCCC-CC-------HHHHHHHhCCCCCCCCceeEEEeecccCCChHH
Q 032598 77 LLVLGNKIDKPEA-LS-------KEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 124 (137)
Q Consensus 77 ~ivv~nK~D~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 124 (137)
+++++||+|+... .. ..++...++...+...++.++++||++|+|+.+
T Consensus 148 iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 148 MICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred EEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 6888999998621 11 233444443333333457899999999999853
No 219
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.47 E-value=2.7e-13 Score=90.89 Aligned_cols=95 Identities=20% Similarity=0.142 Sum_probs=73.7
Q ss_pred cccHHhHHHHhccCCEEEEEEeCCCCC-ChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHH-HHHHHhCCCCCC
Q 032598 28 PRFRSMWERYCRAVSAIVYVVDAADYD-NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE-DLMEQMGLKSIT 105 (137)
Q Consensus 28 ~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~ 105 (137)
+++..+.+.+++++|++++|+|++++. +++.+.+|+..+.. .++|+++++||+|+.+..... +....+..
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~---- 95 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIYRN---- 95 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHHHH----
Confidence 667777788999999999999999877 88888888875532 679999999999996543322 22333321
Q ss_pred CCceeEEEeecccCCChHHHHHHHHH
Q 032598 106 DREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 106 ~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
.+..++++||++|+|++++|+.+..
T Consensus 96 -~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 96 -IGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred -CCCeEEEEecCCchhHHHHHhhhcC
Confidence 2346899999999999999998764
No 220
>PRK12736 elongation factor Tu; Reviewed
Probab=99.46 E-value=2.6e-12 Score=91.55 Aligned_cols=118 Identities=15% Similarity=0.104 Sum_probs=78.2
Q ss_pred EEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCCCC
Q 032598 11 KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDKPEA 89 (137)
Q Consensus 11 ~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~ 89 (137)
.+..++.++.++||||+++|.......+..+|++++|+|+++....+ ....+..+.. .++| +++++||+|+.+.
T Consensus 69 ~~~~~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~-t~~~~~~~~~----~g~~~~IvviNK~D~~~~ 143 (394)
T PRK12736 69 EYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLARQ----VGVPYLVVFLNKVDLVDD 143 (394)
T ss_pred EecCCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHH----cCCCEEEEEEEecCCcch
Confidence 34456778999999999988877777788899999999998742222 2223332222 3577 5788999998743
Q ss_pred CCHH-----HHHHHhCCCCCCCCceeEEEeecccCC--------ChHHHHHHHHHhh
Q 032598 90 LSKE-----DLMEQMGLKSITDREVCCYMISCKNST--------NIDTVIDWLVKHS 133 (137)
Q Consensus 90 ~~~~-----~~~~~~~~~~~~~~~~~~~~~Sa~~~~--------~v~~~~~~i~~~~ 133 (137)
.... ++...+....+.....+++++||++|. ++.++++.+.+.+
T Consensus 144 ~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l 200 (394)
T PRK12736 144 EELLELVEMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI 200 (394)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence 2221 233333222222335679999999983 5778888877654
No 221
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=1.3e-12 Score=94.11 Aligned_cols=116 Identities=23% Similarity=0.294 Sum_probs=85.2
Q ss_pred EEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC
Q 032598 11 KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL 90 (137)
Q Consensus 11 ~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 90 (137)
.++ ++-.++|.||||+..|.+++....+-+|.+++|+.++|.--.+ ..+.+ +.....+.|+++.+||+|.++..
T Consensus 196 ~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQ----T~EaI-khAk~A~VpiVvAinKiDkp~a~ 269 (683)
T KOG1145|consen 196 TLP-SGKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQ----TLEAI-KHAKSANVPIVVAINKIDKPGAN 269 (683)
T ss_pred ecC-CCCEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCccHh----HHHHH-HHHHhcCCCEEEEEeccCCCCCC
Confidence 344 5689999999999999999999999999999999998853222 22222 23344789999999999998765
Q ss_pred CHHHHHHHhCCCCC----CCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 91 SKEDLMEQMGLKSI----TDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 91 ~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
+. ....+|-.... -.-..+++++||++|+|++.|-+.+.-.+
T Consensus 270 pe-kv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill~A 315 (683)
T KOG1145|consen 270 PE-KVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILLLA 315 (683)
T ss_pred HH-HHHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHHHH
Confidence 43 33333321111 12367899999999999999988887544
No 222
>PRK13351 elongation factor G; Reviewed
Probab=99.44 E-value=4.9e-12 Score=95.79 Aligned_cols=82 Identities=27% Similarity=0.219 Sum_probs=65.6
Q ss_pred CcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEee
Q 032598 3 PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGN 82 (137)
Q Consensus 3 pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 82 (137)
+|++.+...+.+++.++++|||||+.++...+..+++.+|++++|+|+++.........| ..+. ..++|+++++|
T Consensus 59 ~ti~~~~~~~~~~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~----~~~~p~iiviN 133 (687)
T PRK13351 59 ITIESAATSCDWDNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQAD----RYGIPRLIFIN 133 (687)
T ss_pred CCcccceEEEEECCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHH----hcCCCEEEEEE
Confidence 456666677888899999999999999999999999999999999999987655543333 2222 24689999999
Q ss_pred CCCCCCC
Q 032598 83 KIDKPEA 89 (137)
Q Consensus 83 K~D~~~~ 89 (137)
|+|+...
T Consensus 134 K~D~~~~ 140 (687)
T PRK13351 134 KMDRVGA 140 (687)
T ss_pred CCCCCCC
Confidence 9998764
No 223
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.44 E-value=2e-12 Score=100.29 Aligned_cols=109 Identities=20% Similarity=0.190 Sum_probs=73.9
Q ss_pred EEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-------
Q 032598 19 IKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS------- 91 (137)
Q Consensus 19 ~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~------- 91 (137)
+.+|||||++.+..+....+..+|++++|+|+++.-..+. ...+..+ .. .++|+++++||+|+.....
T Consensus 528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT-~e~I~~l-k~---~~iPiIVViNKiDL~~~~~~~~~~~~ 602 (1049)
T PRK14845 528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQT-IEAINIL-RQ---YKTPFVVAANKIDLIPGWNISEDEPF 602 (1049)
T ss_pred EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhH-HHHHHHH-HH---cCCCEEEEEECCCCccccccccchhh
Confidence 8999999999999888888889999999999987422221 1122222 22 3689999999999853211
Q ss_pred -----------HHHHH-------HHhCCCCC----------CCCceeEEEeecccCCChHHHHHHHHHh
Q 032598 92 -----------KEDLM-------EQMGLKSI----------TDREVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 92 -----------~~~~~-------~~~~~~~~----------~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
..++. ..|..... ....++++++||++|+|+++|+..+...
T Consensus 603 ~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l 671 (1049)
T PRK14845 603 LLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL 671 (1049)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence 01111 11111111 1235789999999999999999988644
No 224
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.44 E-value=3.8e-12 Score=90.75 Aligned_cols=106 Identities=15% Similarity=0.083 Sum_probs=69.1
Q ss_pred eEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE-EEeeCCCCCC
Q 032598 10 RKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL-VLGNKIDKPE 88 (137)
Q Consensus 10 ~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~ 88 (137)
..+..++.++.+|||||+++|..........+|++++|+|+.+....+ ....+..+.. .++|.+ +++||+|+.+
T Consensus 68 ~~~~~~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~q-t~e~l~~~~~----~gi~~iIvvvNK~Dl~~ 142 (394)
T TIGR00485 68 VEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQ-TREHILLARQ----VGVPYIVVFLNKCDMVD 142 (394)
T ss_pred EEEcCCCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHH----cCCCEEEEEEEecccCC
Confidence 345556788999999999998877777778899999999998743222 2223333322 357765 6899999875
Q ss_pred CCCH-----HHHHHHhCCCCCCCCceeEEEeecccCC
Q 032598 89 ALSK-----EDLMEQMGLKSITDREVCCYMISCKNST 120 (137)
Q Consensus 89 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 120 (137)
.... .++...+.........++++++||++|.
T Consensus 143 ~~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 143 DEELLELVEMEVRELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCccEEECcccccc
Confidence 3221 1233333322222234789999999875
No 225
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.43 E-value=9.1e-13 Score=89.28 Aligned_cols=117 Identities=20% Similarity=0.258 Sum_probs=80.2
Q ss_pred eeEEEeCC-EEEEEEecCCccccHH----h---HHHHhccCCEEEEEEeCCCC---CChHHHHHHHHHHhcC-CCCCCCc
Q 032598 9 MRKVTKGN-VTIKLWDLGGQPRFRS----M---WERYCRAVSAIVYVVDAADY---DNLPVSRSELHDLLSK-PSLNGIP 76 (137)
Q Consensus 9 ~~~~~~~~-~~~~~~Dt~g~~~~~~----~---~~~~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~~~~~-~~~~~~p 76 (137)
...+.+++ .++++.|.||.-...+ + ....++.|+.++||+|++.. ...+++..+..++-.+ ......|
T Consensus 235 iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp 314 (366)
T KOG1489|consen 235 IGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRP 314 (366)
T ss_pred cceeeccccceeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCc
Confidence 33455544 4499999999743322 2 22336779999999999987 5555555544444332 3446789
Q ss_pred EEEEeeCCCCCCCCC-H-HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHh
Q 032598 77 LLVLGNKIDKPEALS-K-EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
.++|+||+|+.+... . .++.+.+... +++++||++++|++++++.|-+.
T Consensus 315 ~liVaNKiD~~eae~~~l~~L~~~lq~~-------~V~pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 315 ALIVANKIDLPEAEKNLLSSLAKRLQNP-------HVVPVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred eEEEEeccCchhHHHHHHHHHHHHcCCC-------cEEEeeeccccchHHHHHHHhhc
Confidence 999999999953322 2 4555555432 69999999999999999987653
No 226
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.43 E-value=4.6e-12 Score=96.41 Aligned_cols=108 Identities=20% Similarity=0.267 Sum_probs=76.9
Q ss_pred EEEeCCEEEEEEecCCccccHH----------hHHHHh--ccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 11 KVTKGNVTIKLWDLGGQPRFRS----------MWERYC--RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 11 ~~~~~~~~~~~~Dt~g~~~~~~----------~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.+..++.++++|||||..++.. ....++ +.+|++++|+|+++.+... .+..++.+ .++|++
T Consensus 44 ~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~l---~l~~ql~e----~giPvI 116 (772)
T PRK09554 44 QFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNL---YLTLQLLE----LGIPCI 116 (772)
T ss_pred EEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchhhH---HHHHHHHH----cCCCEE
Confidence 4667788999999999876532 123343 4799999999998854322 23333332 469999
Q ss_pred EEeeCCCCCCCCCH----HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 79 VLGNKIDKPEALSK----EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 79 vv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
+++||+|+.+.... +++.+.++ ++++++||++|+|++++.+.+.+..
T Consensus 117 vVlNK~Dl~~~~~i~id~~~L~~~LG--------~pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 117 VALNMLDIAEKQNIRIDIDALSARLG--------CPVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred EEEEchhhhhccCcHHHHHHHHHHhC--------CCEEEEEeecCCCHHHHHHHHHHhh
Confidence 99999998654332 23344443 3599999999999999999987754
No 227
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.42 E-value=1.4e-12 Score=94.02 Aligned_cols=112 Identities=15% Similarity=0.165 Sum_probs=76.3
Q ss_pred EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHH---
Q 032598 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE--- 93 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--- 93 (137)
..+.++||||+++|-..+...+..+|++++|+|+.+.....+..+.+. +.... .-.|++++.||+|+.+.....
T Consensus 117 ~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~-i~~~l--gi~~iIVvlNKiDlv~~~~~~~~~ 193 (460)
T PTZ00327 117 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLA-AVEIM--KLKHIIILQNKIDLVKEAQAQDQY 193 (460)
T ss_pred ceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHH-HHHHc--CCCcEEEEEecccccCHHHHHHHH
Confidence 478999999999998888888899999999999987421122222222 22221 124689999999997532222
Q ss_pred -HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 94 -DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 94 -~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
++.+.+... .....+++++||++|+|++.|++.|.+.+
T Consensus 194 ~ei~~~l~~~--~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 194 EEIRNFVKGT--IADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred HHHHHHHHhh--ccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 222222211 12356799999999999999999998654
No 228
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.41 E-value=5.4e-12 Score=90.24 Aligned_cols=114 Identities=14% Similarity=0.063 Sum_probs=72.9
Q ss_pred ceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 86 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 86 (137)
..+..+..++.++.++||||+++|...+...+..+|++++|+|+......+.. ..+. +.... ...++++++||+|+
T Consensus 70 ~~~~~~~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~-~~~~-~~~~~--~~~~iivviNK~D~ 145 (406)
T TIGR02034 70 VAYRYFSTDKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTR-RHSY-IASLL--GIRHVVLAVNKMDL 145 (406)
T ss_pred eeeEEEccCCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccH-HHHH-HHHHc--CCCcEEEEEEeccc
Confidence 34445666788999999999999987777788999999999999875322211 1111 11111 12458899999999
Q ss_pred CCCCC--HHHHHHHhCC--CCCCCCceeEEEeecccCCChHH
Q 032598 87 PEALS--KEDLMEQMGL--KSITDREVCCYMISCKNSTNIDT 124 (137)
Q Consensus 87 ~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~v~~ 124 (137)
.+... ..++...+.. ........+++++||++|+|+++
T Consensus 146 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 146 VDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred ccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 64322 1222222210 00111245699999999999875
No 229
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.41 E-value=4.2e-12 Score=91.63 Aligned_cols=114 Identities=14% Similarity=0.090 Sum_probs=77.1
Q ss_pred ceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCC---Ch---HHHHHHHHHHhcCCCCCCCc-EEE
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD---NL---PVSRSELHDLLSKPSLNGIP-LLV 79 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~p-~iv 79 (137)
..+..+..++..++++||||+++|...+...+..+|++++|+|+++.. .+ .+..+.+..+ . ..++| +++
T Consensus 75 ~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~-~---~~gi~~iiv 150 (446)
T PTZ00141 75 IALWKFETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLA-F---TLGVKQMIV 150 (446)
T ss_pred eeeEEEccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHH-H---HcCCCeEEE
Confidence 444556778899999999999999888888899999999999998742 01 1222222222 2 14566 578
Q ss_pred EeeCCCCCCC----CCH----HHHHHHhCCCCCCCCceeEEEeecccCCChHH
Q 032598 80 LGNKIDKPEA----LSK----EDLMEQMGLKSITDREVCCYMISCKNSTNIDT 124 (137)
Q Consensus 80 v~nK~D~~~~----~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 124 (137)
++||+|.... ... .++...+....+...+++++++||.+|+|+.+
T Consensus 151 ~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 151 CINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred EEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 9999995321 112 33444444333333468899999999999863
No 230
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.41 E-value=1.2e-13 Score=82.77 Aligned_cols=69 Identities=28% Similarity=0.565 Sum_probs=55.3
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHH---HHHHhcCCCCCCCcEEEEeeCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSE---LHDLLSKPSLNGIPLLVLGNKID 85 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---~~~~~~~~~~~~~p~ivv~nK~D 85 (137)
....+.+||++|++.+...+...++.+|++++|||++++.+++++..+ +..+.+. ..++|+++++||.|
T Consensus 48 ~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D 119 (119)
T PF08477_consen 48 DRQSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD 119 (119)
T ss_dssp EEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred CceEEEEEecCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence 344699999999999888878889999999999999999888886544 4444332 35699999999998
No 231
>PRK12735 elongation factor Tu; Reviewed
Probab=99.40 E-value=3.1e-12 Score=91.23 Aligned_cols=118 Identities=17% Similarity=0.105 Sum_probs=77.2
Q ss_pred EEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE-EEeeCCCCCCC
Q 032598 11 KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL-VLGNKIDKPEA 89 (137)
Q Consensus 11 ~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~ 89 (137)
.+..++.++.++||||+++|.......+..+|++++|+|+.+....+ ....+..+. ..++|.+ +++||+|+.+.
T Consensus 69 ~~~~~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~q-t~e~l~~~~----~~gi~~iivvvNK~Dl~~~ 143 (396)
T PRK12735 69 EYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLAR----QVGVPYIVVFLNKCDMVDD 143 (396)
T ss_pred EEcCCCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchh-HHHHHHHHH----HcCCCeEEEEEEecCCcch
Confidence 34456778999999999988777777788999999999998743222 222332222 2457866 57999999743
Q ss_pred CCH-H----HHHHHhCCCCCCCCceeEEEeecccCC----------ChHHHHHHHHHhh
Q 032598 90 LSK-E----DLMEQMGLKSITDREVCCYMISCKNST----------NIDTVIDWLVKHS 133 (137)
Q Consensus 90 ~~~-~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~----------~v~~~~~~i~~~~ 133 (137)
... + ++...+....+...+.+++++||++|. ++.++++.|...+
T Consensus 144 ~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 144 EELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 221 1 232333222222235779999999984 5778888877653
No 232
>COG1159 Era GTPase [General function prediction only]
Probab=99.40 E-value=8.7e-12 Score=84.04 Aligned_cols=116 Identities=22% Similarity=0.185 Sum_probs=78.6
Q ss_pred EEeCCEEEEEEecCCccccHH--------hHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeC
Q 032598 12 VTKGNVTIKLWDLGGQPRFRS--------MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNK 83 (137)
Q Consensus 12 ~~~~~~~~~~~Dt~g~~~~~~--------~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 83 (137)
+..++.++.++||||...-+. .....++.+|.++||+|+++.....+ .+.-+.++. .+.|+++++||
T Consensus 49 ~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d--~~il~~lk~---~~~pvil~iNK 123 (298)
T COG1159 49 VTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGD--EFILEQLKK---TKTPVILVVNK 123 (298)
T ss_pred EEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccH--HHHHHHHhh---cCCCeEEEEEc
Confidence 446689999999999643222 22333678999999999998543322 222222222 46899999999
Q ss_pred CCCCCCCC-HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 84 IDKPEALS-KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 84 ~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+|..+... ...+...+... .....++++||++|.|++.+.+.+...+-+
T Consensus 124 ID~~~~~~~l~~~~~~~~~~---~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 124 IDKVKPKTVLLKLIAFLKKL---LPFKEIVPISALKGDNVDTLLEIIKEYLPE 173 (298)
T ss_pred cccCCcHHHHHHHHHHHHhh---CCcceEEEeeccccCCHHHHHHHHHHhCCC
Confidence 99987655 23333333221 112268999999999999999999887653
No 233
>PRK12740 elongation factor G; Reviewed
Probab=99.40 E-value=2.6e-11 Score=91.68 Aligned_cols=81 Identities=22% Similarity=0.215 Sum_probs=63.3
Q ss_pred cccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeC
Q 032598 4 TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNK 83 (137)
Q Consensus 4 t~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 83 (137)
|++.....+..++..+.+|||||+.++...+...++.+|++++|+|++......... .+..+. ..++|+++++||
T Consensus 47 Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~-~~~~~~----~~~~p~iiv~NK 121 (668)
T PRK12740 47 SITSAATTCEWKGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTET-VWRQAE----KYGVPRIIFVNK 121 (668)
T ss_pred CeeeceEEEEECCEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHH-HHHHHH----HcCCCEEEEEEC
Confidence 555666678888999999999999988888888999999999999998865544332 222222 246899999999
Q ss_pred CCCCCC
Q 032598 84 IDKPEA 89 (137)
Q Consensus 84 ~D~~~~ 89 (137)
+|+...
T Consensus 122 ~D~~~~ 127 (668)
T PRK12740 122 MDRAGA 127 (668)
T ss_pred CCCCCC
Confidence 998754
No 234
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.40 E-value=7.5e-12 Score=84.90 Aligned_cols=90 Identities=26% Similarity=0.344 Sum_probs=65.4
Q ss_pred ceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 86 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 86 (137)
.....+.+++.++++|||||+.++.......++.+|++++|+|+++..... ...++... . ..++|+++++||+|+
T Consensus 61 ~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~-~---~~~~P~iivvNK~D~ 135 (267)
T cd04169 61 SSVMQFEYRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVC-R---LRGIPIITFINKLDR 135 (267)
T ss_pred EEEEEEeeCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHH-H---hcCCCEEEEEECCcc
Confidence 344467888999999999999999887888899999999999998753322 22222222 2 257899999999998
Q ss_pred CCCCC---HHHHHHHhCC
Q 032598 87 PEALS---KEDLMEQMGL 101 (137)
Q Consensus 87 ~~~~~---~~~~~~~~~~ 101 (137)
..... ..++.+.++.
T Consensus 136 ~~a~~~~~~~~l~~~l~~ 153 (267)
T cd04169 136 EGRDPLELLDEIEEELGI 153 (267)
T ss_pred CCCCHHHHHHHHHHHHCC
Confidence 76543 3455665554
No 235
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.39 E-value=1.2e-11 Score=87.48 Aligned_cols=114 Identities=18% Similarity=0.144 Sum_probs=79.8
Q ss_pred eeeEEEeCCEEEEEEecCCccccH---------HhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 8 NMRKVTKGNVTIKLWDLGGQPRFR---------SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 8 ~~~~~~~~~~~~~~~Dt~g~~~~~---------~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.+......+..+.++||+|.+... ......+..||+++||+|....-+.. +..+-.++. ..++|++
T Consensus 42 ~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~--D~~ia~~Lr---~~~kpvi 116 (444)
T COG1160 42 IYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPA--DEEIAKILR---RSKKPVI 116 (444)
T ss_pred ccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHH--HHHHHHHHH---hcCCCEE
Confidence 344455667889999999976432 22333367899999999998754433 233334433 2679999
Q ss_pred EEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 79 VLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 79 vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
+|+||+|...........-.++.. ..+++||.+|.|+.+|.+++.+.+
T Consensus 117 LvvNK~D~~~~e~~~~efyslG~g-------~~~~ISA~Hg~Gi~dLld~v~~~l 164 (444)
T COG1160 117 LVVNKIDNLKAEELAYEFYSLGFG-------EPVPISAEHGRGIGDLLDAVLELL 164 (444)
T ss_pred EEEEcccCchhhhhHHHHHhcCCC-------CceEeehhhccCHHHHHHHHHhhc
Confidence 999999987443333333333333 489999999999999999999875
No 236
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.38 E-value=8.1e-12 Score=84.82 Aligned_cols=90 Identities=21% Similarity=0.185 Sum_probs=65.0
Q ss_pred ceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 86 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 86 (137)
.....+..++.++.++||||+.++...+...++.+|++++|+|+.+...... ...+..+. ..++|+++++||+|+
T Consensus 54 ~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~----~~~~p~ivviNK~D~ 128 (270)
T cd01886 54 SAATTCFWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQAD----RYNVPRIAFVNKMDR 128 (270)
T ss_pred ccEEEEEECCEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHH----HcCCCEEEEEECCCC
Confidence 3445677889999999999999998889999999999999999987543222 22222222 256899999999998
Q ss_pred CCCCC---HHHHHHHhCC
Q 032598 87 PEALS---KEDLMEQMGL 101 (137)
Q Consensus 87 ~~~~~---~~~~~~~~~~ 101 (137)
..... ..++...++.
T Consensus 129 ~~a~~~~~~~~l~~~l~~ 146 (270)
T cd01886 129 TGADFFRVVEQIREKLGA 146 (270)
T ss_pred CCCCHHHHHHHHHHHhCC
Confidence 75422 3445555543
No 237
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=3.6e-12 Score=89.08 Aligned_cols=118 Identities=18% Similarity=0.147 Sum_probs=79.9
Q ss_pred ccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCC-----ChHHHHHHHHHHhcCCCCCCCcEEE
Q 032598 5 VGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD-----NLPVSRSELHDLLSKPSLNGIPLLV 79 (137)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~p~iv 79 (137)
+.....++..+...+++.|+||+.+|-..+-....+||+.|+|+|+...+ +.....+....+...... ...|+
T Consensus 73 i~~~~~~fet~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi--~~lIV 150 (428)
T COG5256 73 IDVAHSKFETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGI--KQLIV 150 (428)
T ss_pred EEEEEEEeecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCC--ceEEE
Confidence 34445567778899999999999999988888899999999999998863 112222222222222222 23788
Q ss_pred EeeCCCCCCCCCH------HHHHHHhCCCCCCCCceeEEEeecccCCChHH
Q 032598 80 LGNKIDKPEALSK------EDLMEQMGLKSITDREVCCYMISCKNSTNIDT 124 (137)
Q Consensus 80 v~nK~D~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 124 (137)
+.||+|..+-+.. .++...++...+...+++|+++||..|+|+.+
T Consensus 151 avNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 151 AVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred EEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 8999999763321 22333333334445578899999999999753
No 238
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.38 E-value=2.7e-12 Score=93.30 Aligned_cols=114 Identities=12% Similarity=0.026 Sum_probs=72.6
Q ss_pred ceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 86 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 86 (137)
..+..+..++.++.++||||++++...+...++.+|++++|+|+.+....+.. ... .+.... .-.|+++++||+|+
T Consensus 97 ~~~~~~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~-~~~-~l~~~l--g~~~iIvvvNKiD~ 172 (474)
T PRK05124 97 VAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTR-RHS-FIATLL--GIKHLVVAVNKMDL 172 (474)
T ss_pred eeEEEeccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccch-HHH-HHHHHh--CCCceEEEEEeecc
Confidence 33445667788999999999998876666678999999999999874321111 111 111111 12478999999999
Q ss_pred CCCCC--HHHHHHHhC----CCCCCCCceeEEEeecccCCChHHH
Q 032598 87 PEALS--KEDLMEQMG----LKSITDREVCCYMISCKNSTNIDTV 125 (137)
Q Consensus 87 ~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~v~~~ 125 (137)
.+... ..++...+. .... ....+++++||++|+|+.++
T Consensus 173 ~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 173 VDYSEEVFERIREDYLTFAEQLPG-NLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred ccchhHHHHHHHHHHHHHHHhcCC-CCCceEEEEEeecCCCcccc
Confidence 74322 222222221 1110 12467999999999998764
No 239
>PRK09866 hypothetical protein; Provisional
Probab=99.37 E-value=8.1e-12 Score=92.15 Aligned_cols=127 Identities=17% Similarity=0.168 Sum_probs=80.4
Q ss_pred CCcccceeeEEEe---CCEEEEEEecCCccc-----cHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCC
Q 032598 2 IPTVGFNMRKVTK---GNVTIKLWDLGGQPR-----FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLN 73 (137)
Q Consensus 2 ~pt~~~~~~~~~~---~~~~~~~~Dt~g~~~-----~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 73 (137)
+|-++..+.++.+ ...++.+.||||... ....+...++.+|.++||+|+....+..+. .....+.+. ..
T Consensus 212 ~p~iev~f~hl~g~l~~~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De-eIlk~Lkk~--~K 288 (741)
T PRK09866 212 IPVIEVEFVHLAGLESYPGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE-EVREAILAV--GQ 288 (741)
T ss_pred CceeeeeeeeccccccccCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH-HHHHHHHhc--CC
Confidence 4666666666542 246899999999753 233455678999999999999875444432 122222221 12
Q ss_pred CCcEEEEeeCCCCCCCCC--HHHHHHHhCCC--CCCCCceeEEEeecccCCChHHHHHHHHH
Q 032598 74 GIPLLVLGNKIDKPEALS--KEDLMEQMGLK--SITDREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 74 ~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
+.|+++++||+|+.+... ...+...+... ........++++||++|.|++.+++.|..
T Consensus 289 ~~PVILVVNKIDl~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 289 SVPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred CCCEEEEEEcccCCCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 359999999999864222 22222221100 11112335899999999999999999876
No 240
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.37 E-value=4.3e-11 Score=87.96 Aligned_cols=74 Identities=23% Similarity=0.287 Sum_probs=56.8
Q ss_pred eEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 032598 10 RKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 10 ~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 88 (137)
..+++++.++.+|||||+.++.......++.+|++++|+|+++... .....++. ... ..++|+++++||+|+..
T Consensus 73 ~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~-~~~---~~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 73 MQFPYRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLME-VTR---LRDTPIFTFMNKLDRDI 146 (527)
T ss_pred EEEeeCCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHH-HHH---hcCCCEEEEEECccccC
Confidence 4577889999999999999988877788999999999999987422 12223333 222 25689999999999864
No 241
>CHL00071 tufA elongation factor Tu
Probab=99.36 E-value=7.6e-12 Score=89.58 Aligned_cols=106 Identities=15% Similarity=0.099 Sum_probs=71.2
Q ss_pred EEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCCCC
Q 032598 11 KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDKPEA 89 (137)
Q Consensus 11 ~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~ 89 (137)
.+..++.++.+.||||+.++...+...+..+|++++|+|+...... +....+..+. . .++| +++++||+|+.+.
T Consensus 69 ~~~~~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~-qt~~~~~~~~-~---~g~~~iIvvvNK~D~~~~ 143 (409)
T CHL00071 69 EYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-QTKEHILLAK-Q---VGVPNIVVFLNKEDQVDD 143 (409)
T ss_pred EEccCCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcH-HHHHHHHHHH-H---cCCCEEEEEEEccCCCCH
Confidence 3555678899999999998887777788999999999999874322 2222232222 1 4578 6789999999753
Q ss_pred CCH-----HHHHHHhCCCCCCCCceeEEEeecccCCC
Q 032598 90 LSK-----EDLMEQMGLKSITDREVCCYMISCKNSTN 121 (137)
Q Consensus 90 ~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 121 (137)
... .++...+....+.....+++++||.+|.|
T Consensus 144 ~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 144 EELLELVELEVRELLSKYDFPGDDIPIVSGSALLALE 180 (409)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhccc
Confidence 221 23333333322223357899999999874
No 242
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.36 E-value=1.5e-11 Score=81.23 Aligned_cols=67 Identities=25% Similarity=0.258 Sum_probs=54.1
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 87 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 87 (137)
+..+++|||||+..+......+++.+|++++|+|+++..+.+.. ..+..... .++|+++++||+|+.
T Consensus 72 ~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~~l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 72 EYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE-TVLRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred ceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-HHHHHHHH----cCCCEEEEEECCCcc
Confidence 78999999999999999999999999999999999987554432 22222222 358999999999985
No 243
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.36 E-value=1.1e-11 Score=77.91 Aligned_cols=111 Identities=21% Similarity=0.265 Sum_probs=68.8
Q ss_pred EEEEEecCCcc----------ccHHhHHHHhcc---CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCC
Q 032598 18 TIKLWDLGGQP----------RFRSMWERYCRA---VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 84 (137)
Q Consensus 18 ~~~~~Dt~g~~----------~~~~~~~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 84 (137)
.+.+|||||.. .+......+++. ++++++++|..+..+.... .+...+.. .+.|+++++||+
T Consensus 46 ~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~l~~---~~~~vi~v~nK~ 120 (170)
T cd01876 46 KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDL--EMLDWLEE---LGIPFLVVLTKA 120 (170)
T ss_pred eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHH--HHHHHHHH---cCCCEEEEEEch
Confidence 89999999943 344555556654 5688999998875332221 11112221 358999999999
Q ss_pred CCCCCCCHHHHHHHhCCCCC-CCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 85 DKPEALSKEDLMEQMGLKSI-TDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 85 D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
|+............+..... .....+++++||+++.|+++++++|.+.+
T Consensus 121 D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 121 DKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEKWL 170 (170)
T ss_pred hcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHhC
Confidence 98644332222111110000 11234689999999999999999998753
No 244
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.36 E-value=9.5e-12 Score=88.05 Aligned_cols=119 Identities=15% Similarity=0.110 Sum_probs=80.0
Q ss_pred EEEeCCEEEEEEecCCccccHHh-----------HHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEE
Q 032598 11 KVTKGNVTIKLWDLGGQPRFRSM-----------WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLV 79 (137)
Q Consensus 11 ~~~~~~~~~~~~Dt~g~~~~~~~-----------~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 79 (137)
.+..++-++.++||+|..+-... ....+..++.+++|+|++++-+-++.. +.......+.++++
T Consensus 220 ~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~-----ia~~i~~~g~~~vI 294 (444)
T COG1160 220 EFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLR-----IAGLIEEAGRGIVI 294 (444)
T ss_pred eEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHH-----HHHHHHHcCCCeEE
Confidence 35567899999999996433221 123367899999999999875543322 22222236789999
Q ss_pred EeeCCCCCCC--CCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 80 LGNKIDKPEA--LSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 80 v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+.||+|+.+. ....+....+..........+.+.+||++|.+++++|+.+.+...
T Consensus 295 vvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~ 351 (444)
T COG1160 295 VVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYE 351 (444)
T ss_pred EEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHH
Confidence 9999998765 333333333332111123446899999999999999999887654
No 245
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.34 E-value=9.5e-11 Score=88.87 Aligned_cols=78 Identities=23% Similarity=0.183 Sum_probs=60.1
Q ss_pred ceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 86 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 86 (137)
.....+..++.++.+|||||+.++...+...++.+|++++|+|+.+....+.. ..+..+. ..++|+++++||+|+
T Consensus 65 ~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~----~~~~p~ivviNK~D~ 139 (689)
T TIGR00484 65 SAATTVFWKGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQAN----RYEVPRIAFVNKMDK 139 (689)
T ss_pred cceEEEEECCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHH----HcCCCEEEEEECCCC
Confidence 34456778899999999999999888888999999999999999886444322 2222222 246899999999998
Q ss_pred CCC
Q 032598 87 PEA 89 (137)
Q Consensus 87 ~~~ 89 (137)
...
T Consensus 140 ~~~ 142 (689)
T TIGR00484 140 TGA 142 (689)
T ss_pred CCC
Confidence 754
No 246
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.34 E-value=3.9e-11 Score=78.94 Aligned_cols=68 Identities=21% Similarity=0.289 Sum_probs=53.7
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 87 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 87 (137)
+...+.+|||||+.++......+++.+|++++|+|+++..+... ..++..... .++|+++++||+|+.
T Consensus 69 ~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~ 136 (213)
T cd04167 69 KSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL 136 (213)
T ss_pred CEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence 35889999999999998888899999999999999988665432 223333322 358999999999975
No 247
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.34 E-value=4.7e-13 Score=84.21 Aligned_cols=115 Identities=24% Similarity=0.294 Sum_probs=90.8
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcC---CCCCCCcEEEEeeCCCCCCCCCH
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSK---PSLNGIPLLVLGNKIDKPEALSK 92 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~---~~~~~~p~ivv~nK~D~~~~~~~ 92 (137)
-+++++||..||+++..+..-|++.+.+..+|||++..-+++-...|.+.+... ......|+++.+||||..+....
T Consensus 74 ~vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~ 153 (229)
T KOG4423|consen 74 IVRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKN 153 (229)
T ss_pred HHHHHHhcchhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhh
Confidence 377899999999999999999999999999999999999999999999887653 34567899999999998654221
Q ss_pred --HHHHHHhC-CCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 93 --EDLMEQMG-LKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 93 --~~~~~~~~-~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
....+.+. .. --..++++|+|.+-|+.|....+++.+.
T Consensus 154 ~~~~~~d~f~ken----gf~gwtets~Kenkni~Ea~r~lVe~~l 194 (229)
T KOG4423|consen 154 EATRQFDNFKKEN----GFEGWTETSAKENKNIPEAQRELVEKIL 194 (229)
T ss_pred hhHHHHHHHHhcc----CccceeeeccccccChhHHHHHHHHHHH
Confidence 12222222 11 1124899999999999999999998775
No 248
>PRK00049 elongation factor Tu; Reviewed
Probab=99.34 E-value=1.6e-11 Score=87.53 Aligned_cols=118 Identities=15% Similarity=0.086 Sum_probs=77.8
Q ss_pred EEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE-EEeeCCCCCCC
Q 032598 11 KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL-VLGNKIDKPEA 89 (137)
Q Consensus 11 ~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~ 89 (137)
.+..++.++.+.||||+.++.......+..+|++++|+|+.+....+ ....+..+. . .++|.+ +++||+|+.+.
T Consensus 69 ~~~~~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~q-t~~~~~~~~-~---~g~p~iiVvvNK~D~~~~ 143 (396)
T PRK00049 69 EYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLAR-Q---VGVPYIVVFLNKCDMVDD 143 (396)
T ss_pred EEcCCCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchH-HHHHHHHHH-H---cCCCEEEEEEeecCCcch
Confidence 34456788999999999888777777789999999999998753222 222222222 2 457876 58999999743
Q ss_pred CCH-----HHHHHHhCCCCCCCCceeEEEeecccCC----------ChHHHHHHHHHhh
Q 032598 90 LSK-----EDLMEQMGLKSITDREVCCYMISCKNST----------NIDTVIDWLVKHS 133 (137)
Q Consensus 90 ~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~----------~v~~~~~~i~~~~ 133 (137)
... .++...+....+...+.+++++||++|. ++..+++.|.+.+
T Consensus 144 ~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 144 EELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 221 1333333322222345779999999875 4677777777643
No 249
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.33 E-value=9e-12 Score=85.67 Aligned_cols=116 Identities=15% Similarity=0.126 Sum_probs=79.5
Q ss_pred cccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeC
Q 032598 4 TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNK 83 (137)
Q Consensus 4 t~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 83 (137)
||...++.+...+.+|.+.||||++.|...+......||..|+++|+-. .+.+..+....+.......+ +++..||
T Consensus 73 TIDVAYRyFsT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~--Gvl~QTrRHs~I~sLLGIrh--vvvAVNK 148 (431)
T COG2895 73 TIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARK--GVLEQTRRHSFIASLLGIRH--VVVAVNK 148 (431)
T ss_pred eEEEEeeecccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecch--hhHHHhHHHHHHHHHhCCcE--EEEEEee
Confidence 5667778888889999999999999999999888999999999999954 33222222223333323334 7888999
Q ss_pred CCCCCCCCH--HHHHHHhCC--CCCCCCceeEEEeecccCCChH
Q 032598 84 IDKPEALSK--EDLMEQMGL--KSITDREVCCYMISCKNSTNID 123 (137)
Q Consensus 84 ~D~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~v~ 123 (137)
+|+.+-... .++...+.. ...+.....++++||..|+|+-
T Consensus 149 mDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 149 MDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred ecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 999865432 223222211 0111224479999999999973
No 250
>PLN03127 Elongation factor Tu; Provisional
Probab=99.32 E-value=2.5e-11 Score=87.62 Aligned_cols=122 Identities=17% Similarity=0.119 Sum_probs=77.3
Q ss_pred ceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE-EEEeeCCC
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL-LVLGNKID 85 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D 85 (137)
.....+..++.++.++||||+.++..........+|++++|+|+.+....+ ....+..+ .. .++|. ++++||+|
T Consensus 114 ~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~q-t~e~l~~~-~~---~gip~iIvviNKiD 188 (447)
T PLN03127 114 TAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLA-RQ---VGVPSLVVFLNKVD 188 (447)
T ss_pred eeEEEEcCCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHH-HH---cCCCeEEEEEEeec
Confidence 334445567789999999999988777777778899999999998753222 12222222 22 46784 68899999
Q ss_pred CCCCCCH-H----HHHHHhCCCCCCCCceeEEEeecc---cCCC-------hHHHHHHHHHhh
Q 032598 86 KPEALSK-E----DLMEQMGLKSITDREVCCYMISCK---NSTN-------IDTVIDWLVKHS 133 (137)
Q Consensus 86 ~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~Sa~---~~~~-------v~~~~~~i~~~~ 133 (137)
+.+.... + ++.+.+....+....++++++||. +|.| +.++++.+.+.+
T Consensus 189 lv~~~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 189 VVDDEELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 9753221 1 222222221222235678888875 4555 677888777654
No 251
>PRK13768 GTPase; Provisional
Probab=99.32 E-value=8.8e-12 Score=84.00 Aligned_cols=117 Identities=19% Similarity=0.120 Sum_probs=74.6
Q ss_pred CEEEEEEecCCcccc---HHhHHHHhcc-----CCEEEEEEeCCCCCChHHHHH--HHHHHhcCCCCCCCcEEEEeeCCC
Q 032598 16 NVTIKLWDLGGQPRF---RSMWERYCRA-----VSAIVYVVDAADYDNLPVSRS--ELHDLLSKPSLNGIPLLVLGNKID 85 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~---~~~~~~~~~~-----~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~~~~p~ivv~nK~D 85 (137)
+..+.+|||||+... +..+..+++. ++++++|+|+.......+... ++...... ..++|+++++||+|
T Consensus 96 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~--~~~~~~i~v~nK~D 173 (253)
T PRK13768 96 DADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL--RLGLPQIPVLNKAD 173 (253)
T ss_pred CCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH--HcCCCEEEEEEhHh
Confidence 347899999998653 4444444333 899999999977544433221 22111111 14789999999999
Q ss_pred CCCCCCHHHHHHHhCC----------C---------------CCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 86 KPEALSKEDLMEQMGL----------K---------------SITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 86 ~~~~~~~~~~~~~~~~----------~---------------~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+.+..........+.. . .......+++++||++++|++++.+++.+.+.
T Consensus 174 ~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 174 LLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred hcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 9766544333332221 0 00011236899999999999999999988764
No 252
>COG2262 HflX GTPases [General function prediction only]
Probab=99.31 E-value=1.4e-10 Score=81.18 Aligned_cols=122 Identities=24% Similarity=0.300 Sum_probs=84.6
Q ss_pred CCcccceeeEEEeC-CEEEEEEecCCc---------cccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCC
Q 032598 2 IPTVGFNMRKVTKG-NVTIKLWDLGGQ---------PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPS 71 (137)
Q Consensus 2 ~pt~~~~~~~~~~~-~~~~~~~Dt~g~---------~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~ 71 (137)
..|.....+.+... +..+.+.||.|- +.|++..+ -...||.++.|+|++++...+.+. -...++....
T Consensus 224 FATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLE-E~~~aDlllhVVDaSdp~~~~~~~-~v~~vL~el~ 301 (411)
T COG2262 224 FATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLE-EVKEADLLLHVVDASDPEILEKLE-AVEDVLAEIG 301 (411)
T ss_pred cccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHH-HhhcCCEEEEEeecCChhHHHHHH-HHHHHHHHcC
Confidence 35666666666544 688999999884 23444332 256799999999999985444443 3344555555
Q ss_pred CCCCcEEEEeeCCCCCCCCC-HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 72 LNGIPLLVLGNKIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 72 ~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
..++|++++.||+|+..... ...+..... ..+.+||++|+|++.+...|.+.+.
T Consensus 302 ~~~~p~i~v~NKiD~~~~~~~~~~~~~~~~---------~~v~iSA~~~~gl~~L~~~i~~~l~ 356 (411)
T COG2262 302 ADEIPIILVLNKIDLLEDEEILAELERGSP---------NPVFISAKTGEGLDLLRERIIELLS 356 (411)
T ss_pred CCCCCEEEEEecccccCchhhhhhhhhcCC---------CeEEEEeccCcCHHHHHHHHHHHhh
Confidence 56799999999999865433 111111110 3899999999999999999998876
No 253
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.30 E-value=2.9e-11 Score=90.88 Aligned_cols=114 Identities=13% Similarity=0.046 Sum_probs=71.9
Q ss_pred ceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 86 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 86 (137)
..+..+..++.++.++||||++++...+...+..+|++++|+|+......+. ......+... ...|+++++||+|+
T Consensus 94 ~~~~~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t-~e~~~~~~~~---~~~~iivvvNK~D~ 169 (632)
T PRK05506 94 VAYRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT-RRHSFIASLL---GIRHVVLAVNKMDL 169 (632)
T ss_pred eeeeEEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC-HHHHHHHHHh---CCCeEEEEEEeccc
Confidence 3344566678899999999999887767777899999999999976432211 1111111111 22578899999999
Q ss_pred CCCCC--HHHHHHHhCC--CCCCCCceeEEEeecccCCChHH
Q 032598 87 PEALS--KEDLMEQMGL--KSITDREVCCYMISCKNSTNIDT 124 (137)
Q Consensus 87 ~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~v~~ 124 (137)
.+... ..++...+.. ........+++++||++|+|+.+
T Consensus 170 ~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 170 VDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred ccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 64221 2222222210 01111245689999999999874
No 254
>PLN03126 Elongation factor Tu; Provisional
Probab=99.30 E-value=5.9e-11 Score=86.28 Aligned_cols=107 Identities=15% Similarity=0.112 Sum_probs=72.5
Q ss_pred eEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCCC
Q 032598 10 RKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDKPE 88 (137)
Q Consensus 10 ~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~ 88 (137)
..+..++.++.++||||+++|...+...+..+|++++|+|+.+....+ ..+++..+. . .++| +++++||+|+.+
T Consensus 137 ~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~q-t~e~~~~~~-~---~gi~~iIvvvNK~Dl~~ 211 (478)
T PLN03126 137 VEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAK-Q---VGVPNMVVFLNKQDQVD 211 (478)
T ss_pred EEEecCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHH-H---cCCCeEEEEEecccccC
Confidence 345567889999999999999888888889999999999998753322 223333222 2 4677 678999999975
Q ss_pred CCCH-H----HHHHHhCCCCCCCCceeEEEeecccCCC
Q 032598 89 ALSK-E----DLMEQMGLKSITDREVCCYMISCKNSTN 121 (137)
Q Consensus 89 ~~~~-~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 121 (137)
.... + ++...+....+...+.+++++||.+|.+
T Consensus 212 ~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 212 DEELLELVELEVRELLSSYEFPGDDIPIISGSALLALE 249 (478)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcCcceEEEEEcccccc
Confidence 3221 1 3333333222233467899999998853
No 255
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.30 E-value=6.6e-11 Score=80.75 Aligned_cols=126 Identities=18% Similarity=0.177 Sum_probs=90.3
Q ss_pred CCcccceeeEEEeCCEEEEEEecCCccccH--------HhHHHHhcc-CCEEEEEEeCCC--CCChHHHHHHHHHHhcCC
Q 032598 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFR--------SMWERYCRA-VSAIVYVVDAAD--YDNLPVSRSELHDLLSKP 70 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~--------~~~~~~~~~-~~~~i~v~d~~~--~~~~~~~~~~~~~~~~~~ 70 (137)
.+|-+.+++++..+..+++++||||..+.- ...-..++. +++++|++|++. .-+++.+..+++++...
T Consensus 200 FTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~- 278 (346)
T COG1084 200 FTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKEL- 278 (346)
T ss_pred ccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHh-
Confidence 467789999999999999999999963221 111111333 789999999986 46788888888888765
Q ss_pred CCCCCcEEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 71 SLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 71 ~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
...|+++|+||+|........++...+.... ......+++..+.+++.+-..+...+.
T Consensus 279 --f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~----~~~~~~~~~~~~~~~d~~~~~v~~~a~ 336 (346)
T COG1084 279 --FKAPIVVVINKIDIADEEKLEEIEASVLEEG----GEEPLKISATKGCGLDKLREEVRKTAL 336 (346)
T ss_pred --cCCCeEEEEecccccchhHHHHHHHHHHhhc----cccccceeeeehhhHHHHHHHHHHHhh
Confidence 3389999999999986666655554443221 113577888889998888877776643
No 256
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.28 E-value=1.7e-10 Score=81.99 Aligned_cols=111 Identities=14% Similarity=0.176 Sum_probs=78.4
Q ss_pred eEEEeCCEEEEEEecCCccccHHhH--------HHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 10 RKVTKGNVTIKLWDLGGQPRFRSMW--------ERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 10 ~~~~~~~~~~~~~Dt~g~~~~~~~~--------~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
..++-+++.+.+.||+|.+...... ...+++||.+++|+|.+.+.+-.+.. .++ ....++|+++|.
T Consensus 258 e~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~-~~~-----~~~~~~~~i~v~ 331 (454)
T COG0486 258 EDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLA-LIE-----LLPKKKPIIVVL 331 (454)
T ss_pred EEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHH-HHH-----hcccCCCEEEEE
Confidence 3577789999999999986543322 23378899999999999863322211 111 123679999999
Q ss_pred eCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 82 NKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 82 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
||.|+......... ... .+..++.+||++|+|++.+.+.|.+.+.
T Consensus 332 NK~DL~~~~~~~~~--~~~------~~~~~i~iSa~t~~Gl~~L~~~i~~~~~ 376 (454)
T COG0486 332 NKADLVSKIELESE--KLA------NGDAIISISAKTGEGLDALREAIKQLFG 376 (454)
T ss_pred echhcccccccchh--hcc------CCCceEEEEecCccCHHHHHHHHHHHHh
Confidence 99999876543322 111 1225899999999999999999987764
No 257
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.27 E-value=2e-10 Score=73.60 Aligned_cols=125 Identities=22% Similarity=0.343 Sum_probs=83.6
Q ss_pred CCccc----ceeeEEEeCCEEEEEEecCC----------ccccHHhHHHHhcc---CCEEEEEEeCCCCCChHHHHHHHH
Q 032598 2 IPTVG----FNMRKVTKGNVTIKLWDLGG----------QPRFRSMWERYCRA---VSAIVYVVDAADYDNLPVSRSELH 64 (137)
Q Consensus 2 ~pt~~----~~~~~~~~~~~~~~~~Dt~g----------~~~~~~~~~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~ 64 (137)
+-|.| .|+..++. .+.+.|.|| ++.+..+..+|++. ..++++++|+..+.. ..+...-
T Consensus 54 SktPGrTq~iNff~~~~---~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~--~~D~em~ 128 (200)
T COG0218 54 SKTPGRTQLINFFEVDD---ELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPK--DLDREMI 128 (200)
T ss_pred CCCCCccceeEEEEecC---cEEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCc--HHHHHHH
Confidence 34566 44444433 389999999 35667788888764 568888889876533 3333333
Q ss_pred HHhcCCCCCCCcEEEEeeCCCCCCCCCH----HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 65 DLLSKPSLNGIPLLVLGNKIDKPEALSK----EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 65 ~~~~~~~~~~~p~ivv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
+++.. .++|+++++||+|..+.... ..+.+.+...... ..+ ++..|+.++.|++++...|.+.+...
T Consensus 129 ~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~-~~~-~~~~ss~~k~Gi~~l~~~i~~~~~~~ 199 (200)
T COG0218 129 EFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPD-DQW-VVLFSSLKKKGIDELKAKILEWLKEA 199 (200)
T ss_pred HHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCc-cce-EEEEecccccCHHHHHHHHHHHhhcc
Confidence 33333 67999999999999876444 3444444432221 112 78899999999999999999887653
No 258
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.25 E-value=4.3e-11 Score=77.41 Aligned_cols=98 Identities=17% Similarity=0.177 Sum_probs=63.9
Q ss_pred ccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH-HHHHHHh---CCCCC
Q 032598 29 RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK-EDLMEQM---GLKSI 104 (137)
Q Consensus 29 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~---~~~~~ 104 (137)
.++.++..+++.+|++++|+|+++...- |...+... ..++|+++|+||+|+...... ....... .....
T Consensus 23 ~~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 95 (190)
T cd01855 23 FILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGL 95 (190)
T ss_pred HHHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhc
Confidence 3578888899999999999999875421 11222111 246899999999998644322 1111111 00000
Q ss_pred CCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 105 TDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 105 ~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
......++++||++|+|++++++.+.+.+
T Consensus 96 ~~~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 96 GLKPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred CCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 11112489999999999999999998865
No 259
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.25 E-value=2.5e-11 Score=76.14 Aligned_cols=94 Identities=15% Similarity=0.098 Sum_probs=62.2
Q ss_pred cHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCce
Q 032598 30 FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREV 109 (137)
Q Consensus 30 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 109 (137)
++.++.+.++.+|.+++|+|+.++....+. .. ..... ..++|+++++||+|+.+............. ...
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l-~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~-----~~~ 71 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRSR-KL-ERYVL---ELGKKLLIVLNKADLVPKEVLEKWKSIKES-----EGI 71 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCCH-HH-HHHHH---hCCCcEEEEEEhHHhCCHHHHHHHHHHHHh-----CCC
Confidence 356778888899999999999875432221 11 11111 246899999999998643222221111111 123
Q ss_pred eEEEeecccCCChHHHHHHHHHhh
Q 032598 110 CCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 110 ~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
.++++||+++.|++++++.+.+.+
T Consensus 72 ~~~~iSa~~~~gi~~L~~~l~~~~ 95 (156)
T cd01859 72 PVVYVSAKERLGTKILRRTIKELA 95 (156)
T ss_pred cEEEEEccccccHHHHHHHHHHHH
Confidence 589999999999999999998765
No 260
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.25 E-value=7.6e-11 Score=72.27 Aligned_cols=99 Identities=17% Similarity=0.218 Sum_probs=66.7
Q ss_pred EEEecCCcc----ccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC-CCCCHHH
Q 032598 20 KLWDLGGQP----RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP-EALSKED 94 (137)
Q Consensus 20 ~~~Dt~g~~----~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~-~~~~~~~ 94 (137)
.++||||-. .+..-.-.....||.+++|.|++++.+.- =..+. ...+.|+|=|++|+|+. +......
T Consensus 39 ~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~-----pP~fa---~~f~~pvIGVITK~Dl~~~~~~i~~ 110 (143)
T PF10662_consen 39 NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVF-----PPGFA---SMFNKPVIGVITKIDLPSDDANIER 110 (143)
T ss_pred cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccC-----Cchhh---cccCCCEEEEEECccCccchhhHHH
Confidence 569999963 22232333356799999999999865311 01111 22468999999999998 3334455
Q ss_pred HHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHH
Q 032598 95 LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLV 130 (137)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 130 (137)
....|+..... +++++|+.+|+|+++|.+.|-
T Consensus 111 a~~~L~~aG~~----~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 111 AKKWLKNAGVK----EIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred HHHHHHHcCCC----CeEEEECCCCcCHHHHHHHHh
Confidence 55555443332 379999999999999998874
No 261
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.25 E-value=1.6e-10 Score=78.51 Aligned_cols=81 Identities=22% Similarity=0.194 Sum_probs=61.6
Q ss_pred cccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeC
Q 032598 4 TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNK 83 (137)
Q Consensus 4 t~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 83 (137)
|+......+..++..+++|||||..++...+...++.+|++++|+|+++....... ..+..+. ..++|.++++||
T Consensus 51 ti~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~-~~~~~~~----~~~~p~iivvNK 125 (268)
T cd04170 51 SISTSVAPLEWKGHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTE-KLWEFAD----EAGIPRIIFINK 125 (268)
T ss_pred cccceeEEEEECCEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHH----HcCCCEEEEEEC
Confidence 34445556778899999999999998888888999999999999999986543322 2222222 246899999999
Q ss_pred CCCCCC
Q 032598 84 IDKPEA 89 (137)
Q Consensus 84 ~D~~~~ 89 (137)
+|+...
T Consensus 126 ~D~~~~ 131 (268)
T cd04170 126 MDRERA 131 (268)
T ss_pred CccCCC
Confidence 998765
No 262
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.24 E-value=5.6e-11 Score=84.70 Aligned_cols=132 Identities=22% Similarity=0.347 Sum_probs=97.2
Q ss_pred CCcccceeeEEEe-CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCC----------ChHHHHHHHHHHhcCC
Q 032598 2 IPTVGFNMRKVTK-GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD----------NLPVSRSELHDLLSKP 70 (137)
Q Consensus 2 ~pt~~~~~~~~~~-~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------~~~~~~~~~~~~~~~~ 70 (137)
.+|.|+....+.. ++..+.++|++|+...+..|.+++.+.++++||+++++.+ .+.+....+..+....
T Consensus 220 ~~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~ 299 (389)
T PF00503_consen 220 VKTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNP 299 (389)
T ss_dssp ---SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSG
T ss_pred CCCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCc
Confidence 4788888888888 9999999999999999999999999999999999987532 2556667788888877
Q ss_pred CCCCCcEEEEeeCCCCCC----CCC----------------HH----HHHHHhCCCCCCC---CceeEEEeecccCCChH
Q 032598 71 SLNGIPLLVLGNKIDKPE----ALS----------------KE----DLMEQMGLKSITD---REVCCYMISCKNSTNID 123 (137)
Q Consensus 71 ~~~~~p~ivv~nK~D~~~----~~~----------------~~----~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~v~ 123 (137)
...+.|++|++||.|+-. ..+ .. -+...+....... +.+.++.++|.+.+++.
T Consensus 300 ~~~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~ 379 (389)
T PF00503_consen 300 WFKNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIR 379 (389)
T ss_dssp GGTTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHH
T ss_pred ccccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHH
Confidence 778999999999999521 111 11 1222222111112 67788999999999999
Q ss_pred HHHHHHHHhh
Q 032598 124 TVIDWLVKHS 133 (137)
Q Consensus 124 ~~~~~i~~~~ 133 (137)
.+|+.+.+.+
T Consensus 380 ~v~~~v~~~i 389 (389)
T PF00503_consen 380 KVFNAVKDII 389 (389)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhcCcC
Confidence 9999987754
No 263
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.18 E-value=2.6e-10 Score=75.66 Aligned_cols=127 Identities=18% Similarity=0.241 Sum_probs=77.9
Q ss_pred CcccceeeEEE-eCCEEEEEEecCCccccHH-----hHHHHhccCCEEEEEEeCCCCCChHHHHH---HHHHHhcCCCCC
Q 032598 3 PTVGFNMRKVT-KGNVTIKLWDLGGQPRFRS-----MWERYCRAVSAIVYVVDAADYDNLPVSRS---ELHDLLSKPSLN 73 (137)
Q Consensus 3 pt~~~~~~~~~-~~~~~~~~~Dt~g~~~~~~-----~~~~~~~~~~~~i~v~d~~~~~~~~~~~~---~~~~~~~~~~~~ 73 (137)
||+......+. .+...+++||+||+..+-. .....++++.++|+|+|+.+.+-.+++.. .+..+.+. .+
T Consensus 33 ~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~--sp 110 (232)
T PF04670_consen 33 PTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQY--SP 110 (232)
T ss_dssp ---SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHH--ST
T ss_pred CcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHh--CC
Confidence 56666666665 4578999999999975533 46777899999999999995543333333 23333222 37
Q ss_pred CCcEEEEeeCCCCCCCCCHH--------HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 74 GIPLLVLGNKIDKPEALSKE--------DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 74 ~~p~ivv~nK~D~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
++.+.++.+|+|+....... .+.+.+.... ...+.++.||-.+ +.+-+++..++..+.
T Consensus 111 ~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~--~~~~~~~~TSI~D-~Sly~A~S~Ivq~Li 176 (232)
T PF04670_consen 111 NIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLG--IEDITFFLTSIWD-ESLYEAWSKIVQKLI 176 (232)
T ss_dssp T-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT---TSEEEEEE-TTS-THHHHHHHHHHHTTS
T ss_pred CCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhcc--ccceEEEeccCcC-cHHHHHHHHHHHHHc
Confidence 88999999999987543322 2222222111 1146788999886 689999998887764
No 264
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.15 E-value=7.2e-11 Score=75.31 Aligned_cols=84 Identities=27% Similarity=0.347 Sum_probs=55.4
Q ss_pred CCEEEEEEecCCccccHHhHHHH---hccCCEEEEEEeCCC-CCChHHHHHHHHHHhcCC--CCCCCcEEEEeeCCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERY---CRAVSAIVYVVDAAD-YDNLPVSRSELHDLLSKP--SLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~---~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~ 88 (137)
.+..+.++|+||+.+.+...... ...+.++|||+|++. .....+..+++..++... ....+|+++++||.|+..
T Consensus 47 ~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 47 KGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp CGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred CCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 34579999999999888655554 788999999999974 334555556665555432 246799999999999988
Q ss_pred CCCHHHHHHH
Q 032598 89 ALSKEDLMEQ 98 (137)
Q Consensus 89 ~~~~~~~~~~ 98 (137)
..+...+...
T Consensus 127 A~~~~~Ik~~ 136 (181)
T PF09439_consen 127 AKPPKKIKKL 136 (181)
T ss_dssp ---HHHHHHH
T ss_pred cCCHHHHHHH
Confidence 7665444333
No 265
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.14 E-value=1.5e-09 Score=80.32 Aligned_cols=115 Identities=21% Similarity=0.264 Sum_probs=84.4
Q ss_pred ccceeeEEEeCCEEEEEEecCCcccc------HHhHHHHhc--cCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 5 VGFNMRKVTKGNVTIKLWDLGGQPRF------RSMWERYCR--AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~Dt~g~~~~------~~~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
++-...++..++.++++.|.||..+. ....++|+. ..|.++.|+|+++.+.-- ...-+++. .+.|
T Consensus 38 VEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLeRnL---yltlQLlE----~g~p 110 (653)
T COG0370 38 VEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNLERNL---YLTLQLLE----LGIP 110 (653)
T ss_pred EEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchHHHHH---HHHHHHHH----cCCC
Confidence 33444456677888999999997433 345555653 479999999999854322 22223332 5789
Q ss_pred EEEEeeCCCCCCC----CCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 77 LLVLGNKIDKPEA----LSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 77 ~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
++++.|++|..+. .+.+++.+.++.+ ++++||++|+|++++...+.+...
T Consensus 111 ~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvP--------Vv~tvA~~g~G~~~l~~~i~~~~~ 164 (653)
T COG0370 111 MILALNMIDEAKKRGIRIDIEKLSKLLGVP--------VVPTVAKRGEGLEELKRAIIELAE 164 (653)
T ss_pred eEEEeccHhhHHhcCCcccHHHHHHHhCCC--------EEEEEeecCCCHHHHHHHHHHhcc
Confidence 9999999998765 3457788888764 999999999999999999987654
No 266
>PRK00007 elongation factor G; Reviewed
Probab=99.13 E-value=3.5e-09 Score=80.49 Aligned_cols=77 Identities=21% Similarity=0.173 Sum_probs=57.8
Q ss_pred eeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 032598 8 NMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 87 (137)
Q Consensus 8 ~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 87 (137)
....+..++.+++++||||+.++.......++.+|++++|+|+...-..+.. ..+..+. ..++|+++++||+|+.
T Consensus 66 ~~~~~~~~~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~-~~~~~~~----~~~~p~iv~vNK~D~~ 140 (693)
T PRK00007 66 AATTCFWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSE-TVWRQAD----KYKVPRIAFVNKMDRT 140 (693)
T ss_pred cEEEEEECCeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhH-HHHHHHH----HcCCCEEEEEECCCCC
Confidence 3445677899999999999998887788889999999999998875433322 2222222 2568999999999987
Q ss_pred CC
Q 032598 88 EA 89 (137)
Q Consensus 88 ~~ 89 (137)
..
T Consensus 141 ~~ 142 (693)
T PRK00007 141 GA 142 (693)
T ss_pred CC
Confidence 53
No 267
>PRK12739 elongation factor G; Reviewed
Probab=99.12 E-value=1.6e-09 Score=82.26 Aligned_cols=78 Identities=23% Similarity=0.188 Sum_probs=59.6
Q ss_pred ceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 86 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 86 (137)
.....+..++.++.++||||+.++...+...++.+|++++|+|+.+....+.. ..+..+. ..++|+++++||+|+
T Consensus 63 ~~~~~~~~~~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~----~~~~p~iv~iNK~D~ 137 (691)
T PRK12739 63 SAATTCFWKGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQAD----KYGVPRIVFVNKMDR 137 (691)
T ss_pred ceeEEEEECCEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHH----HcCCCEEEEEECCCC
Confidence 44456777899999999999998888888899999999999999876433222 2222222 256899999999999
Q ss_pred CCC
Q 032598 87 PEA 89 (137)
Q Consensus 87 ~~~ 89 (137)
...
T Consensus 138 ~~~ 140 (691)
T PRK12739 138 IGA 140 (691)
T ss_pred CCC
Confidence 864
No 268
>PRK12289 GTPase RsgA; Reviewed
Probab=99.12 E-value=3.7e-10 Score=79.21 Aligned_cols=90 Identities=12% Similarity=0.089 Sum_probs=63.5
Q ss_pred hHHHHhccCCEEEEEEeCCCCC-ChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeE
Q 032598 33 MWERYCRAVSAIVYVVDAADYD-NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCC 111 (137)
Q Consensus 33 ~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (137)
+.+..++++|.+++|+|+.++. ....+.+++..+. ..++|+++|+||+|+.+..........+.. .+..+
T Consensus 82 L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~----~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~-----~g~~v 152 (352)
T PRK12289 82 LDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAE----STGLEIVLCLNKADLVSPTEQQQWQDRLQQ-----WGYQP 152 (352)
T ss_pred eechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH----HCCCCEEEEEEchhcCChHHHHHHHHHHHh-----cCCeE
Confidence 3344588999999999998765 4445566665442 257999999999999754322333333321 12358
Q ss_pred EEeecccCCChHHHHHHHHH
Q 032598 112 YMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 112 ~~~Sa~~~~~v~~~~~~i~~ 131 (137)
+++||++++|++++++.+..
T Consensus 153 ~~iSA~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 153 LFISVETGIGLEALLEQLRN 172 (352)
T ss_pred EEEEcCCCCCHHHHhhhhcc
Confidence 99999999999999998864
No 269
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=1.4e-09 Score=76.90 Aligned_cols=121 Identities=17% Similarity=0.112 Sum_probs=82.5
Q ss_pred ceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCC
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKID 85 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D 85 (137)
..++..+.++..+.|+|+||++++-+.+-..+...|..++|+++++.-..+ ....-.+++. -+++ -+++++|+|
T Consensus 40 lg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~q--tgEhL~iLdl---lgi~~giivltk~D 114 (447)
T COG3276 40 LGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQ--TGEHLLILDL---LGIKNGIIVLTKAD 114 (447)
T ss_pred eeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchh--hHHHHHHHHh---cCCCceEEEEeccc
Confidence 334444445669999999999999988888899999999999997632111 1222223333 2233 499999999
Q ss_pred CCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 86 KPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
..+.....+..+.+..... ..+.+++.+|+++|+|++++-+.|.+..
T Consensus 115 ~~d~~r~e~~i~~Il~~l~-l~~~~i~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 115 RVDEARIEQKIKQILADLS-LANAKIFKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred cccHHHHHHHHHHHHhhcc-cccccccccccccCCCHHHHHHHHHHhh
Confidence 9865433322222221111 3455689999999999999999999877
No 270
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.08 E-value=1.8e-09 Score=74.20 Aligned_cols=126 Identities=21% Similarity=0.216 Sum_probs=80.1
Q ss_pred ceeeEEE-eCCEEEEEEecCCccccH-------HhHHHHhccCCEEEEEEeCCCCC---ChHHHHHHHHHHhcC-CCCCC
Q 032598 7 FNMRKVT-KGNVTIKLWDLGGQPRFR-------SMWERYCRAVSAIVYVVDAADYD---NLPVSRSELHDLLSK-PSLNG 74 (137)
Q Consensus 7 ~~~~~~~-~~~~~~~~~Dt~g~~~~~-------~~~~~~~~~~~~~i~v~d~~~~~---~~~~~~~~~~~~~~~-~~~~~ 74 (137)
.+...+. ..+-.|.+.|.||.-... ......++.+..+++|+|++..+ ..++......++..+ ....+
T Consensus 196 PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~ 275 (369)
T COG0536 196 PNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAE 275 (369)
T ss_pred CcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhcc
Confidence 3333444 456679999999964322 12233467799999999998654 344444444444443 34578
Q ss_pred CcEEEEeeCCCCCCC-CCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 75 IPLLVLGNKIDKPEA-LSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 75 ~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
.|.++++||+|+... +..+.+...+.... .....+.+||.+++|++++...+.+.+.+
T Consensus 276 K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~---~~~~~~~ISa~t~~g~~~L~~~~~~~l~~ 334 (369)
T COG0536 276 KPRIVVLNKIDLPLDEEELEELKKALAEAL---GWEVFYLISALTREGLDELLRALAELLEE 334 (369)
T ss_pred CceEEEEeccCCCcCHHHHHHHHHHHHHhc---CCCcceeeehhcccCHHHHHHHHHHHHHH
Confidence 999999999996544 23344444443210 01112229999999999999999887764
No 271
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.05 E-value=3.5e-09 Score=75.53 Aligned_cols=117 Identities=25% Similarity=0.382 Sum_probs=84.1
Q ss_pred EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC
Q 032598 12 VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS 91 (137)
Q Consensus 12 ~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 91 (137)
+.++++.+++.||||+.+|-...+..++=.|++++++|+.+.. ..+.+..+...+. .+.+-|+|.||+|.+..++
T Consensus 63 v~~~~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl~----~gL~PIVVvNKiDrp~Arp 137 (603)
T COG1217 63 VNYNGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALA----LGLKPIVVINKIDRPDARP 137 (603)
T ss_pred eecCCeEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCC-CCchhhhHHHHHH----cCCCcEEEEeCCCCCCCCH
Confidence 6788999999999999999999999999999999999999853 3333444444433 4566799999999988765
Q ss_pred H---HHHHHHhCCCCCCC--CceeEEEeecccCC----------ChHHHHHHHHHhh
Q 032598 92 K---EDLMEQMGLKSITD--REVCCYMISCKNST----------NIDTVIDWLVKHS 133 (137)
Q Consensus 92 ~---~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~----------~v~~~~~~i~~~~ 133 (137)
. .+..+.+-...... -.++++..||+.|. ++.-||+.|.+.+
T Consensus 138 ~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hv 194 (603)
T COG1217 138 DEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHV 194 (603)
T ss_pred HHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhC
Confidence 3 33334332222221 24667888988773 4677888877654
No 272
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.05 E-value=4.8e-09 Score=71.30 Aligned_cols=121 Identities=20% Similarity=0.205 Sum_probs=75.0
Q ss_pred eEEEeCCEEEEEEecCCcccc------H------HhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 10 RKVTKGNVTIKLWDLGGQPRF------R------SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 10 ~~~~~~~~~~~~~Dt~g~~~~------~------~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
..+..+..++.|+||||.-.- . ....+.+..||.++.|+|+++....-.. ..+..+-. .+++|-
T Consensus 113 gi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p-~vl~~l~~---ys~ips 188 (379)
T KOG1423|consen 113 GIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHP-RVLHMLEE---YSKIPS 188 (379)
T ss_pred EEEecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccCh-HHHHHHHH---HhcCCc
Confidence 345677899999999995211 1 1122336679999999999974332211 12222222 267899
Q ss_pred EEEeeCCCCCCCCCH-----------------HHHHHHhCCCCCC-----CCce----eEEEeecccCCChHHHHHHHHH
Q 032598 78 LVLGNKIDKPEALSK-----------------EDLMEQMGLKSIT-----DREV----CCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 78 ivv~nK~D~~~~~~~-----------------~~~~~~~~~~~~~-----~~~~----~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
++|.||.|....... -++.+.+...... .-+| .+|.+||++|+|++++-++|..
T Consensus 189 ~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLms 268 (379)
T KOG1423|consen 189 ILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMS 268 (379)
T ss_pred eeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHh
Confidence 999999997654321 0112222111100 0012 3799999999999999999987
Q ss_pred hhh
Q 032598 132 HSK 134 (137)
Q Consensus 132 ~~~ 134 (137)
.+.
T Consensus 269 qa~ 271 (379)
T KOG1423|consen 269 QAP 271 (379)
T ss_pred cCC
Confidence 764
No 273
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.03 E-value=3.6e-10 Score=80.99 Aligned_cols=127 Identities=15% Similarity=0.117 Sum_probs=89.5
Q ss_pred CcccceeeEEEeCCEEEEEEecCCccccH----HhHHHH-----hccCCEEEEEEeCCC--CCChHHHHHHHHHHhcCCC
Q 032598 3 PTVGFNMRKVTKGNVTIKLWDLGGQPRFR----SMWERY-----CRAVSAIVYVVDAAD--YDNLPVSRSELHDLLSKPS 71 (137)
Q Consensus 3 pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~----~~~~~~-----~~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~~~~ 71 (137)
+|-+.-+.++++.-..+++.||||..+.- ..++.. ..--.++++++|++. ..|+.+...+++.+...
T Consensus 201 TTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpL-- 278 (620)
T KOG1490|consen 201 TTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPL-- 278 (620)
T ss_pred ccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHH--
Confidence 45556666777777889999999964321 111111 122457889999886 57888888888888543
Q ss_pred CCCCcEEEEeeCCCCCCCCCHH----HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 72 LNGIPLLVLGNKIDKPEALSKE----DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 72 ~~~~p~ivv~nK~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+.+.|+|+|+||+|+....... ++.+.+.. ..+++++++|..+.+|+.++-...++.+..
T Consensus 279 FaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~----~~~v~v~~tS~~~eegVm~Vrt~ACe~LLa 342 (620)
T KOG1490|consen 279 FANKVTILVLNKIDAMRPEDLDQKNQELLQTIID----DGNVKVVQTSCVQEEGVMDVRTTACEALLA 342 (620)
T ss_pred hcCCceEEEeecccccCccccCHHHHHHHHHHHh----ccCceEEEecccchhceeeHHHHHHHHHHH
Confidence 5789999999999987655442 33333332 234679999999999999998888887764
No 274
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.02 E-value=5.2e-10 Score=78.96 Aligned_cols=98 Identities=27% Similarity=0.344 Sum_probs=65.0
Q ss_pred CccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC-CHHHHHHH----hC
Q 032598 26 GQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL-SKEDLMEQ----MG 100 (137)
Q Consensus 26 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~----~~ 100 (137)
..+++..+...+.+.++++++|+|+.+... .|...+.+.. .+.|+++|+||+|+.... ....+... .+
T Consensus 49 ~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~-----s~~~~l~~~~--~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k 121 (360)
T TIGR03597 49 NDDDFLNLLNSLGDSNALIVYVVDIFDFEG-----SLIPELKRFV--GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAK 121 (360)
T ss_pred CHHHHHHHHhhcccCCcEEEEEEECcCCCC-----CccHHHHHHh--CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHH
Confidence 356788888888899999999999987542 2223332221 367999999999986532 22222211 11
Q ss_pred CCCCCCCceeEEEeecccCCChHHHHHHHHHh
Q 032598 101 LKSITDREVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 101 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
.. +.....++.+||++|.|++++++.+.+.
T Consensus 122 ~~--g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 122 EL--GLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred Hc--CCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 11 0001138899999999999999998764
No 275
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=99.02 E-value=1.9e-10 Score=75.45 Aligned_cols=135 Identities=16% Similarity=0.284 Sum_probs=102.4
Q ss_pred CCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCC----------CCChHHHHHHHHHHhcCCC
Q 032598 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD----------YDNLPVSRSELHDLLSKPS 71 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~ 71 (137)
.||.|+.-+.++.+++.+.+.|.+|+...+..|-+++.+.-.+++++..+. ....++...++..+....+
T Consensus 184 vPTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPW 263 (359)
T KOG0085|consen 184 VPTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW 263 (359)
T ss_pred cCcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhcccc
Confidence 589999988999999999999999999999999999998877777766553 2345666778888888889
Q ss_pred CCCCcEEEEeeCCCCCCCCCH-----------------HH-----HHHHhC-CCCCCCCceeEEEeecccCCChHHHHHH
Q 032598 72 LNGIPLLVLGNKIDKPEALSK-----------------ED-----LMEQMG-LKSITDREVCCYMISCKNSTNIDTVIDW 128 (137)
Q Consensus 72 ~~~~p~ivv~nK~D~~~~~~~-----------------~~-----~~~~~~-~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 128 (137)
+.+.++|++.||.|+.+..-. .+ +...+- ......+.+..+.++|.+.+|+..+|..
T Consensus 264 F~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaa 343 (359)
T KOG0085|consen 264 FQNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAA 343 (359)
T ss_pred ccCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHH
Confidence 999999999999998764221 01 111111 1122234455688999999999999999
Q ss_pred HHHhhhhc
Q 032598 129 LVKHSKSK 136 (137)
Q Consensus 129 i~~~~~~~ 136 (137)
+-..+.+.
T Consensus 344 VkDtiLq~ 351 (359)
T KOG0085|consen 344 VKDTILQL 351 (359)
T ss_pred HHHHHHHh
Confidence 88877654
No 276
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.02 E-value=1.9e-09 Score=73.95 Aligned_cols=85 Identities=18% Similarity=0.119 Sum_probs=61.7
Q ss_pred hccCCEEEEEEeCCCCC-ChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeec
Q 032598 38 CRAVSAIVYVVDAADYD-NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISC 116 (137)
Q Consensus 38 ~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 116 (137)
+.++|.+++|+|+.++. ++..+.+|+..+.. .++|+++++||+|+.+............. .+..++.+||
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~~~~~~~~~~~-----~g~~v~~vSA 146 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEEEELELVEALA-----LGYPVLAVSA 146 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHHHHHHHHHHHh-----CCCeEEEEEC
Confidence 77899999999999887 77777777765543 46899999999999654211111111111 1346899999
Q ss_pred ccCCChHHHHHHHHH
Q 032598 117 KNSTNIDTVIDWLVK 131 (137)
Q Consensus 117 ~~~~~v~~~~~~i~~ 131 (137)
+++.|+++++..+..
T Consensus 147 ~~g~gi~~L~~~L~~ 161 (287)
T cd01854 147 KTGEGLDELREYLKG 161 (287)
T ss_pred CCCccHHHHHhhhcc
Confidence 999999999988753
No 277
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.02 E-value=9.2e-10 Score=80.00 Aligned_cols=114 Identities=17% Similarity=0.163 Sum_probs=88.1
Q ss_pred eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHH-HHHHHHhcCC-CCCCCcEEEEeeCCCCCCCCC
Q 032598 14 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKP-SLNGIPLLVLGNKIDKPEALS 91 (137)
Q Consensus 14 ~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~ 91 (137)
-+.+...+.||+..+.-+.....-+++|+++.+|++.+++.+++.+. .|+..+.+.. ..-++|+|+|+||.|......
T Consensus 53 Pe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~ 132 (625)
T KOG1707|consen 53 PENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNEN 132 (625)
T ss_pred cCcCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccc
Confidence 45677899999988877777788899999999999999999999876 6998887753 235799999999999876544
Q ss_pred H------HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 92 K------EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 92 ~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
. ..+..++.... .+++|||++..++.++|.-.-+++
T Consensus 133 ~s~e~~~~pim~~f~EiE------tciecSA~~~~n~~e~fYyaqKaV 174 (625)
T KOG1707|consen 133 NSDEVNTLPIMIAFAEIE------TCIECSALTLANVSELFYYAQKAV 174 (625)
T ss_pred cchhHHHHHHHHHhHHHH------HHHhhhhhhhhhhHhhhhhhhhee
Confidence 3 12333333221 279999999999999998766554
No 278
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=1.1e-08 Score=72.44 Aligned_cols=86 Identities=23% Similarity=0.281 Sum_probs=64.3
Q ss_pred eEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 032598 10 RKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 89 (137)
Q Consensus 10 ~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 89 (137)
-.+++.+..+++.||||+++|..-...-+.-+|..++|+|+...-..+ ..++++-+. ..++|++-++||+|....
T Consensus 74 MqF~Y~~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~q-T~KLfeVcr----lR~iPI~TFiNKlDR~~r 148 (528)
T COG4108 74 MQFDYADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQ-TLKLFEVCR----LRDIPIFTFINKLDREGR 148 (528)
T ss_pred EEeccCCeEEeccCCCCccccchhHHHHHHhhheeeEEEecccCccHH-HHHHHHHHh----hcCCceEEEeeccccccC
Confidence 357789999999999999999877777788899999999998753222 334555553 378999999999998664
Q ss_pred CCH---HHHHHHhC
Q 032598 90 LSK---EDLMEQMG 100 (137)
Q Consensus 90 ~~~---~~~~~~~~ 100 (137)
.+. +++.+.|+
T Consensus 149 dP~ELLdEiE~~L~ 162 (528)
T COG4108 149 DPLELLDEIEEELG 162 (528)
T ss_pred ChHHHHHHHHHHhC
Confidence 442 34444443
No 279
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.00 E-value=2.8e-08 Score=69.06 Aligned_cols=54 Identities=20% Similarity=0.270 Sum_probs=37.6
Q ss_pred CCcEEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHH-HHHHhh
Q 032598 74 GIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVID-WLVKHS 133 (137)
Q Consensus 74 ~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~-~i~~~~ 133 (137)
.+|+++++||.|+..... ....+... .....++++||+.+.+++++.+ .+.+.+
T Consensus 214 ~KPvI~VlNK~Dl~~~~~---~~~~l~~~---~~~~~iI~iSA~~e~~L~~L~~~~i~~~l 268 (318)
T cd01899 214 SKPMVIAANKADIPDAEN---NISKLRLK---YPDEIVVPTSAEAELALRRAAKQGLIKYD 268 (318)
T ss_pred CCcEEEEEEHHHccChHH---HHHHHHhh---CCCCeEEEEeCcccccHHHHHHhhHHHhC
Confidence 579999999999753322 22222111 1134689999999999999997 587765
No 280
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.00 E-value=3.5e-09 Score=67.43 Aligned_cols=97 Identities=13% Similarity=0.083 Sum_probs=62.7
Q ss_pred CCc-cccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHHhCCCC
Q 032598 25 GGQ-PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKS 103 (137)
Q Consensus 25 ~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~ 103 (137)
||+ .+........++.+|.+++|+|+.++...... ..... ..+.|+++++||+|+.+........+.+...
T Consensus 3 ~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~------~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~- 74 (171)
T cd01856 3 PGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKI------LGNKPRIIVLNKADLADPKKTKKWLKYFESK- 74 (171)
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhH------hcCCCEEEEEehhhcCChHHHHHHHHHHHhc-
Confidence 444 23445566778999999999999876432211 11111 1357899999999996432222222222211
Q ss_pred CCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 104 ITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 104 ~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
...++.+||++++|++++.+.+.+.+
T Consensus 75 ----~~~vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 75 ----GEKVLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred ----CCeEEEEECCCcccHHHHHHHHHHHH
Confidence 12478999999999999999988764
No 281
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.99 E-value=4.5e-09 Score=66.00 Aligned_cols=90 Identities=17% Similarity=0.168 Sum_probs=58.7
Q ss_pred HhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeec
Q 032598 37 YCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISC 116 (137)
Q Consensus 37 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 116 (137)
.++.+|.+++|+|+.++..... ..+...+.. ...++|+++|+||+|+.+..........+... . ....+++||
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~--~~i~~~l~~-~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~-~---~~~~~~iSa 77 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRC--KHVEEYLKK-EKPHKHLIFVLNKCDLVPTWVTARWVKILSKE-Y---PTIAFHASI 77 (157)
T ss_pred hhhhCCEEEEEEECCCCccccC--HHHHHHHHh-ccCCCCEEEEEEchhcCCHHHHHHHHHHHhcC-C---cEEEEEeec
Confidence 4678999999999998632211 222222222 12468999999999996543333334444321 1 122588999
Q ss_pred ccCCChHHHHHHHHHhh
Q 032598 117 KNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 117 ~~~~~v~~~~~~i~~~~ 133 (137)
+.+.|++++++.+.+..
T Consensus 78 ~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 78 NNPFGKGSLIQLLRQFS 94 (157)
T ss_pred cccccHHHHHHHHHHHH
Confidence 99999999999997654
No 282
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.99 E-value=2e-09 Score=71.76 Aligned_cols=132 Identities=19% Similarity=0.257 Sum_probs=93.4
Q ss_pred cccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCC----------ChHHHHHHHHHHhcCCCCC
Q 032598 4 TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD----------NLPVSRSELHDLLSKPSLN 73 (137)
Q Consensus 4 t~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------~~~~~~~~~~~~~~~~~~~ 73 (137)
|.|+...++....++++++|.+||.+-+..|-.++...-+++||+..++.. .+++.-.++..+.+..+..
T Consensus 189 TsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~ 268 (379)
T KOG0099|consen 189 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLR 268 (379)
T ss_pred ccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHh
Confidence 345555667788999999999999999999999999999999999988532 2344445666666666667
Q ss_pred CCcEEEEeeCCCCCCCCCH---HHHHHHh----------------------------------CC---CCCCCCceeEEE
Q 032598 74 GIPLLVLGNKIDKPEALSK---EDLMEQM----------------------------------GL---KSITDREVCCYM 113 (137)
Q Consensus 74 ~~p~ivv~nK~D~~~~~~~---~~~~~~~----------------------------------~~---~~~~~~~~~~~~ 113 (137)
.+.+|++.||.|+...... ..+.+.+ .. .......|.+++
T Consensus 269 tisvIlFLNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHF 348 (379)
T KOG0099|consen 269 TISVILFLNKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHF 348 (379)
T ss_pred hhheeEEecHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccce
Confidence 7899999999997432100 0011111 00 011133566789
Q ss_pred eecccCCChHHHHHHHHHhhhh
Q 032598 114 ISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 114 ~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++|.+.+|+..+|+..-..+..
T Consensus 349 TcAvDTenIrrVFnDcrdiIqr 370 (379)
T KOG0099|consen 349 TCAVDTENIRRVFNDCRDIIQR 370 (379)
T ss_pred eEeechHHHHHHHHHHHHHHHH
Confidence 9999999999999988777654
No 283
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.99 E-value=6.6e-09 Score=71.11 Aligned_cols=118 Identities=23% Similarity=0.171 Sum_probs=80.1
Q ss_pred ceeeEEEeCCEEEEEEecCCccccH-------HhHHHHhccCCEEEEEEeCCCCCC-hHHHHHHHHHH------------
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFR-------SMWERYCRAVSAIVYVVDAADYDN-LPVSRSELHDL------------ 66 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~-------~~~~~~~~~~~~~i~v~d~~~~~~-~~~~~~~~~~~------------ 66 (137)
..-..+.+++.++++.|+||.-... ...-...+.||.+++|+|+..... .+.+.+.++..
T Consensus 100 ~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~ 179 (365)
T COG1163 100 PVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVT 179 (365)
T ss_pred cccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceE
Confidence 3334567899999999999864322 223344789999999999986543 32333333311
Q ss_pred ----------------------------hcC------------------------CCCCCCcEEEEeeCCCCCCCCCHHH
Q 032598 67 ----------------------------LSK------------------------PSLNGIPLLVLGNKIDKPEALSKED 94 (137)
Q Consensus 67 ----------------------------~~~------------------------~~~~~~p~ivv~nK~D~~~~~~~~~ 94 (137)
+.. .+...+|.+++.||+|+........
T Consensus 180 I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~ 259 (365)
T COG1163 180 IKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELER 259 (365)
T ss_pred EEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHH
Confidence 000 0012589999999999987444444
Q ss_pred HHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 95 LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+.+.. ..+++||+.+.|++++.+.|.+.+.
T Consensus 260 l~~~~----------~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 260 LARKP----------NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred HHhcc----------ceEEEecccCCCHHHHHHHHHHhhC
Confidence 44433 3899999999999999999988764
No 284
>PRK12288 GTPase RsgA; Reviewed
Probab=98.94 E-value=7.3e-09 Score=72.71 Aligned_cols=85 Identities=18% Similarity=0.139 Sum_probs=62.7
Q ss_pred ccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH---HHHHHHhCCCCCCCCceeEEEee
Q 032598 39 RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK---EDLMEQMGLKSITDREVCCYMIS 115 (137)
Q Consensus 39 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~S 115 (137)
.++|.+++|++.....++..+.+|+..+. ..++|.++++||+|+...... ......+.. .+..++++|
T Consensus 119 ANvD~vlIV~s~~p~~s~~~Ldr~L~~a~----~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~-----~g~~v~~vS 189 (347)
T PRK12288 119 ANIDQIVIVSAVLPELSLNIIDRYLVACE----TLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRN-----IGYRVLMVS 189 (347)
T ss_pred EEccEEEEEEeCCCCCCHHHHHHHHHHHH----hcCCCEEEEEECccCCCcHHHHHHHHHHHHHHh-----CCCeEEEEe
Confidence 56999999999887788888888876442 257899999999999754321 222222211 134689999
Q ss_pred cccCCChHHHHHHHHHh
Q 032598 116 CKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 116 a~~~~~v~~~~~~i~~~ 132 (137)
|++++|++++++.+...
T Consensus 190 A~tg~GideL~~~L~~k 206 (347)
T PRK12288 190 SHTGEGLEELEAALTGR 206 (347)
T ss_pred CCCCcCHHHHHHHHhhC
Confidence 99999999999998754
No 285
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=3.9e-09 Score=72.19 Aligned_cols=113 Identities=19% Similarity=0.168 Sum_probs=79.2
Q ss_pred EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH----
Q 032598 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK---- 92 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~---- 92 (137)
..+.|.|.||++-.-+.+.....--|+.++|+++.++-+..+..+.+..+ ... .-..++++-||+|+...+..
T Consensus 86 R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Al-eIi--gik~iiIvQNKIDlV~~E~AlE~y 162 (415)
T COG5257 86 RRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMAL-EII--GIKNIIIVQNKIDLVSRERALENY 162 (415)
T ss_pred EEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHH-hhh--ccceEEEEecccceecHHHHHHHH
Confidence 46899999999877666655555679999999999864444444444433 221 22458999999999765332
Q ss_pred HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 93 EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
.++.+.++.- -..+.+++++||..+.|++-+++.|.+.+-
T Consensus 163 ~qIk~FvkGt--~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ip 202 (415)
T COG5257 163 EQIKEFVKGT--VAENAPIIPISAQHKANIDALIEAIEKYIP 202 (415)
T ss_pred HHHHHHhccc--ccCCCceeeehhhhccCHHHHHHHHHHhCC
Confidence 3333333321 123567999999999999999999988763
No 286
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=7.6e-09 Score=77.40 Aligned_cols=113 Identities=16% Similarity=0.177 Sum_probs=77.7
Q ss_pred EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC-----C-
Q 032598 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA-----L- 90 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-----~- 90 (137)
--+.++||||++.|..++...-.-||..|+|+|+...-..+.+. -+. ..+..+.|+|+.+||+|..-. .
T Consensus 540 Pg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiE-Si~----lLR~rktpFivALNKiDRLYgwk~~p~~ 614 (1064)
T KOG1144|consen 540 PGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIE-SIN----LLRMRKTPFIVALNKIDRLYGWKSCPNA 614 (1064)
T ss_pred CeeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhH-HHH----HHHhcCCCeEEeehhhhhhcccccCCCc
Confidence 34788999999999999998899999999999998742222111 112 223368999999999995321 1
Q ss_pred CH-------------------HHHHHHhCCCC------CC----CCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 91 SK-------------------EDLMEQMGLKS------IT----DREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 91 ~~-------------------~~~~~~~~~~~------~~----~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+. ..+...|.... +. ...+.++++||-+|+|+-+|+.+|++...
T Consensus 615 ~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ 687 (1064)
T KOG1144|consen 615 PIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ 687 (1064)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence 10 11222222111 11 23467899999999999999999998764
No 287
>PRK00098 GTPase RsgA; Reviewed
Probab=98.92 E-value=5e-09 Score=72.27 Aligned_cols=84 Identities=23% Similarity=0.180 Sum_probs=58.4
Q ss_pred hccCCEEEEEEeCCCCCChHH-HHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHHHhCCCCCCCCceeEEEee
Q 032598 38 CRAVSAIVYVVDAADYDNLPV-SRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-KEDLMEQMGLKSITDREVCCYMIS 115 (137)
Q Consensus 38 ~~~~~~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S 115 (137)
..++|.+++|+|+.++.+... +.+|+..+.. .++|+++++||+|+.+... .......+.. .+..++++|
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~----~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~-----~g~~v~~vS 148 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA----NGIKPIIVLNKIDLLDDLEEARELLALYRA-----IGYDVLELS 148 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEhHHcCCCHHHHHHHHHHHHH-----CCCeEEEEe
Confidence 478999999999988765443 4566555432 5789999999999963221 1122222211 124689999
Q ss_pred cccCCChHHHHHHHH
Q 032598 116 CKNSTNIDTVIDWLV 130 (137)
Q Consensus 116 a~~~~~v~~~~~~i~ 130 (137)
|++++|++++++.+.
T Consensus 149 A~~g~gi~~L~~~l~ 163 (298)
T PRK00098 149 AKEGEGLDELKPLLA 163 (298)
T ss_pred CCCCccHHHHHhhcc
Confidence 999999999998775
No 288
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=9.5e-09 Score=74.83 Aligned_cols=111 Identities=20% Similarity=0.126 Sum_probs=75.0
Q ss_pred EEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCC---Ch--HHHHHHHHHHhcCCCCCCCcEEEEeeCCC
Q 032598 11 KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD---NL--PVSRSELHDLLSKPSLNGIPLLVLGNKID 85 (137)
Q Consensus 11 ~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 85 (137)
.++.....+++.|+||+..|.+.+-....+||+.++|+|++-.. +| ....+....+++.... ..+++++||+|
T Consensus 249 ~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi--~qlivaiNKmD 326 (603)
T KOG0458|consen 249 WFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGI--SQLIVAINKMD 326 (603)
T ss_pred EEecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCc--ceEEEEeeccc
Confidence 45566789999999999999998888899999999999998421 11 1112222333333332 34789999999
Q ss_pred CCCCC--CHHHHHHHh-----CCCCCCCCceeEEEeecccCCChH
Q 032598 86 KPEAL--SKEDLMEQM-----GLKSITDREVCCYMISCKNSTNID 123 (137)
Q Consensus 86 ~~~~~--~~~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~~v~ 123 (137)
+.+=. ..+++...+ ....+....+.|++||+..|+|+-
T Consensus 327 ~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~ 371 (603)
T KOG0458|consen 327 LVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLI 371 (603)
T ss_pred ccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccc
Confidence 86532 223333333 223344557789999999999963
No 289
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.91 E-value=1.1e-08 Score=69.97 Aligned_cols=98 Identities=16% Similarity=0.183 Sum_probs=64.5
Q ss_pred CCcc-ccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHHhCCCC
Q 032598 25 GGQP-RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKS 103 (137)
Q Consensus 25 ~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~ 103 (137)
||+. +........++.+|.+++|+|+.++.+... ..+.... .+.|+++|.||+|+.+........+.+..
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~-- 75 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFEE-- 75 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHHH--
Confidence 5653 334456667889999999999987644322 1222222 35799999999999643222222223321
Q ss_pred CCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 104 ITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 104 ~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
....++.+||+++.|++++.+.+.+.+.
T Consensus 76 ---~~~~vi~iSa~~~~gi~~L~~~i~~~~~ 103 (276)
T TIGR03596 76 ---KGIKALAINAKKGKGVKKIIKAAKKLLK 103 (276)
T ss_pred ---cCCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 1124799999999999999998887654
No 290
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.90 E-value=1.3e-08 Score=63.72 Aligned_cols=82 Identities=20% Similarity=0.182 Sum_probs=53.2
Q ss_pred CEEEEEEeCCCCCChHHHHHHHH-HHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCC
Q 032598 42 SAIVYVVDAADYDNLPVSRSELH-DLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120 (137)
Q Consensus 42 ~~~i~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 120 (137)
|.+++|+|+.++.+... .++. .... ..++|+++++||+|+.+..........+... ....++.+||++|.
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~---~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~----~~~~ii~vSa~~~~ 71 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIERVLIK---EKGKKLILVLNKADLVPKEVLRKWLAYLRHS----YPTIPFKISATNGQ 71 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHHHHHh---cCCCCEEEEEechhcCCHHHHHHHHHHHHhh----CCceEEEEeccCCc
Confidence 67899999988754432 2222 1222 2568999999999996432222222222211 02247899999999
Q ss_pred ChHHHHHHHHHh
Q 032598 121 NIDTVIDWLVKH 132 (137)
Q Consensus 121 ~v~~~~~~i~~~ 132 (137)
|++++.+.+.+.
T Consensus 72 gi~~L~~~i~~~ 83 (155)
T cd01849 72 GIEKKESAFTKQ 83 (155)
T ss_pred ChhhHHHHHHHH
Confidence 999999988764
No 291
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.88 E-value=2.7e-08 Score=76.03 Aligned_cols=72 Identities=22% Similarity=0.172 Sum_probs=54.6
Q ss_pred EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 032598 12 VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 12 ~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 88 (137)
+++++.++.+|||||+.++.......++.+|++++|+|+.+....+....+ .... ..++|.++++||+|...
T Consensus 81 ~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~-~~~~----~~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 81 YEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVL-RQAL----KENVKPVLFINKVDRLI 152 (720)
T ss_pred ecCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHH-HHHH----HcCCCEEEEEEChhccc
Confidence 556789999999999999988888899999999999999875332222112 2221 14578899999999864
No 292
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=4.8e-08 Score=73.87 Aligned_cols=87 Identities=26% Similarity=0.252 Sum_probs=65.9
Q ss_pred eEEEeCC-EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 032598 10 RKVTKGN-VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 10 ~~~~~~~-~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 88 (137)
.++.+++ ..++++||||+-+|.......++-+|+.+.|+|+...-..+.-.-|.+.. ..++|.+++.||+|...
T Consensus 68 ~s~~~~~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~-----~~~vp~i~fiNKmDR~~ 142 (697)
T COG0480 68 TTLFWKGDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQAD-----KYGVPRILFVNKMDRLG 142 (697)
T ss_pred eEEEEcCceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHh-----hcCCCeEEEEECccccc
Confidence 3456774 99999999999999999999999999999999999864444333444333 35799999999999865
Q ss_pred CC---CHHHHHHHhCC
Q 032598 89 AL---SKEDLMEQMGL 101 (137)
Q Consensus 89 ~~---~~~~~~~~~~~ 101 (137)
.. ...++...+..
T Consensus 143 a~~~~~~~~l~~~l~~ 158 (697)
T COG0480 143 ADFYLVVEQLKERLGA 158 (697)
T ss_pred cChhhhHHHHHHHhCC
Confidence 53 34455555543
No 293
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.80 E-value=2.4e-08 Score=65.00 Aligned_cols=111 Identities=13% Similarity=0.202 Sum_probs=65.6
Q ss_pred EEEEEEecCCccccHHhHHHH-----hccCCEEEEEEeCCCCCChHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCCCCCC
Q 032598 17 VTIKLWDLGGQPRFRSMWERY-----CRAVSAIVYVVDAADYDNLPVSRS-ELHDLLSKPSLNGIPLLVLGNKIDKPEAL 90 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~~~~~~~-----~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 90 (137)
.++.+|||||..........+ +..+|.+++|.+. ++..... ++..+.. .+.|+++|+||+|+....
T Consensus 52 ~~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~----~~~~~d~~~~~~l~~----~~~~~ilV~nK~D~~~~~ 123 (197)
T cd04104 52 PNVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISST----RFSSNDVKLAKAIQC----MGKKFYFVRTKVDRDLSN 123 (197)
T ss_pred CCceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeCC----CCCHHHHHHHHHHHH----hCCCEEEEEecccchhhh
Confidence 478999999975432222233 5678988887432 2333332 3333322 357899999999984321
Q ss_pred C---------HHHHHHHhCCC------CCCCCceeEEEeecc--cCCChHHHHHHHHHhhhh
Q 032598 91 S---------KEDLMEQMGLK------SITDREVCCYMISCK--NSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 91 ~---------~~~~~~~~~~~------~~~~~~~~~~~~Sa~--~~~~v~~~~~~i~~~~~~ 135 (137)
. ..++...+... ........++.+|+. .+.++..+.+.|...+-+
T Consensus 124 ~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 124 EQRSKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPA 185 (197)
T ss_pred hhccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence 1 11222221110 001123468999998 578999999999887754
No 294
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.80 E-value=3.2e-08 Score=61.10 Aligned_cols=79 Identities=15% Similarity=0.092 Sum_probs=49.6
Q ss_pred HHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEe
Q 032598 35 ERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMI 114 (137)
Q Consensus 35 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (137)
...++.+|++++|+|+.++.+... ..+...+... ..++|+++++||+|+.+..........+... ...++++
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~--~~l~~~l~~~-~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~-----~~~ii~i 77 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRP--PDLERYVKEV-DPRKKNILLLNKADLLTEEQRKAWAEYFKKE-----GIVVVFF 77 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCC--HHHHHHHHhc-cCCCcEEEEEechhcCCHHHHHHHHHHHHhc-----CCeEEEE
Confidence 456788999999999988654331 1222222221 1578999999999996543333333433321 1358899
Q ss_pred ecccCCC
Q 032598 115 SCKNSTN 121 (137)
Q Consensus 115 Sa~~~~~ 121 (137)
||+++++
T Consensus 78 Sa~~~~~ 84 (141)
T cd01857 78 SALKENA 84 (141)
T ss_pred EecCCCc
Confidence 9998764
No 295
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.79 E-value=3.8e-08 Score=67.61 Aligned_cols=99 Identities=16% Similarity=0.188 Sum_probs=65.0
Q ss_pred cCCcc-ccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHHhCCC
Q 032598 24 LGGQP-RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLK 102 (137)
Q Consensus 24 t~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~ 102 (137)
-||+. +........++.+|.+++|+|+.++.+... ..+.... .+.|+++|.||+|+.+........+.+...
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~-----~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~ 79 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII-----GNKPRLLILNKSDLADPEVTKKWIEYFEEQ 79 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh-----CCCCEEEEEEchhcCCHHHHHHHHHHHHHc
Confidence 46663 334456667899999999999987644322 2223332 258999999999996432122233323211
Q ss_pred CCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 103 SITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 103 ~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
...++.+||+++.|++++.+.+.+.+.
T Consensus 80 -----~~~vi~vSa~~~~gi~~L~~~l~~~l~ 106 (287)
T PRK09563 80 -----GIKALAINAKKGQGVKKILKAAKKLLK 106 (287)
T ss_pred -----CCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 235789999999999999998877653
No 296
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.74 E-value=2.4e-08 Score=66.81 Aligned_cols=115 Identities=17% Similarity=0.093 Sum_probs=60.2
Q ss_pred EEEEEecCCccccHHhHHHHh--------ccCCEEEEEEeCCCCCChHH-HHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 032598 18 TIKLWDLGGQPRFRSMWERYC--------RAVSAIVYVVDAADYDNLPV-SRSELHDLLSKPSLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 18 ~~~~~Dt~g~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 88 (137)
.+.++|||||.+.-..+...- ...-++++++|+....+... +...+..+.-. ...+.|.+.+.||+|+.+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~-~~~~lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIM-LRLELPHVNVLSKIDLLS 170 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHH-HHHTSEEEEEE--GGGS-
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHH-hhCCCCEEEeeeccCccc
Confidence 788999999976655444432 34568899999887655333 22222222211 114799999999999986
Q ss_pred CCC--------------------HHHHHHHhCCCCCCCCce-eEEEeecccCCChHHHHHHHHHhh
Q 032598 89 ALS--------------------KEDLMEQMGLKSITDREV-CCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 89 ~~~--------------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
... ...+...+.......... .++++|+.+++|+++++..+-+.+
T Consensus 171 ~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 171 KYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred chhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 220 011111111101111222 699999999999999999988765
No 297
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.74 E-value=5.1e-08 Score=58.06 Aligned_cols=99 Identities=13% Similarity=0.074 Sum_probs=67.6
Q ss_pred EEecCCccccHHh----HHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHH
Q 032598 21 LWDLGGQPRFRSM----WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLM 96 (137)
Q Consensus 21 ~~Dt~g~~~~~~~----~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 96 (137)
.+||||..-.... .......+|.+++|-.+.++++.- .. ........|+|-+++|.|+.+........
T Consensus 41 ~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f------~p--~f~~~~~k~vIgvVTK~DLaed~dI~~~~ 112 (148)
T COG4917 41 DIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRF------PP--GFLDIGVKKVIGVVTKADLAEDADISLVK 112 (148)
T ss_pred ccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccC------Cc--ccccccccceEEEEecccccchHhHHHHH
Confidence 6799996432222 333457799999999999876511 11 12233567799999999999755555444
Q ss_pred HHhCCCCCCCCceeEEEeecccCCChHHHHHHHHH
Q 032598 97 EQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
..|...... ++|.+|+.+..|+++++..+..
T Consensus 113 ~~L~eaGa~----~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 113 RWLREAGAE----PIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred HHHHHcCCc----ceEEEeccCcccHHHHHHHHHh
Confidence 444432222 5999999999999999988764
No 298
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=1.6e-07 Score=63.88 Aligned_cols=118 Identities=15% Similarity=0.106 Sum_probs=75.5
Q ss_pred EEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCC-cEEEEeeCCCCCCC
Q 032598 11 KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGI-PLLVLGNKIDKPEA 89 (137)
Q Consensus 11 ~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-p~ivv~nK~D~~~~ 89 (137)
.++..+..+...|+||+.+|-+.+-....+.|+.|+|+++++..-++. +.. ++- .+.-+. -++++.||+|+.+.
T Consensus 69 eyet~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqT-rEH---iLl-arqvGvp~ivvflnK~Dmvdd 143 (394)
T COG0050 69 EYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQT-REH---ILL-ARQVGVPYIVVFLNKVDMVDD 143 (394)
T ss_pred EEecCCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcc-hhh---hhh-hhhcCCcEEEEEEecccccCc
Confidence 355667899999999999998888888889999999999998543321 111 111 112344 35777999999875
Q ss_pred CCH-----HHHHHHhCCCCCCCCceeEEEeeccc-CCC-------hHHHHHHHHHhh
Q 032598 90 LSK-----EDLMEQMGLKSITDREVCCYMISCKN-STN-------IDTVIDWLVKHS 133 (137)
Q Consensus 90 ~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~~-------v~~~~~~i~~~~ 133 (137)
... .++.+.|....+.....+++..||+. .+| +.+|++.+.+.+
T Consensus 144 ~ellelVemEvreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yi 200 (394)
T COG0050 144 EELLELVEMEVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYI 200 (394)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcC
Confidence 432 23344444333334456778888754 232 466666655543
No 299
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.72 E-value=1e-07 Score=66.51 Aligned_cols=108 Identities=13% Similarity=0.096 Sum_probs=70.2
Q ss_pred eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH-
Q 032598 14 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK- 92 (137)
Q Consensus 14 ~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~- 92 (137)
..++.+.++||+|...-... ....+|.+++|.++...+.++... ..+ ..+.-++|+||+|+.+....
T Consensus 146 ~~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k---~gi------~E~aDIiVVNKaDl~~~~~a~ 213 (332)
T PRK09435 146 AAGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIK---KGI------MELADLIVINKADGDNKTAAR 213 (332)
T ss_pred ccCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHH---hhh------hhhhheEEeehhcccchhHHH
Confidence 45789999999998643322 356799999998754444433322 112 22334899999998764332
Q ss_pred ---HHHHHHhCCCCCC--CCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 93 ---EDLMEQMGLKSIT--DREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 93 ---~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
.++...+....-. ....+++.+||++|+|++++++.+.+..
T Consensus 214 ~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~ 259 (332)
T PRK09435 214 RAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHR 259 (332)
T ss_pred HHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3344444432111 1224689999999999999999998865
No 300
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.70 E-value=9.9e-08 Score=62.24 Aligned_cols=102 Identities=22% Similarity=0.260 Sum_probs=63.9
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE--EEEeeCCCCCCC--CC
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL--LVLGNKIDKPEA--LS 91 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~--ivv~nK~D~~~~--~~ 91 (137)
+....++++.|..--....+ .+ ++.++.|+|+.+.++... ... .++.. ++++||+|+... ..
T Consensus 91 ~~D~iiIEt~G~~l~~~~~~-~l--~~~~i~vvD~~~~~~~~~--~~~---------~qi~~ad~~~~~k~d~~~~~~~~ 156 (199)
T TIGR00101 91 PLEMVFIESGGDNLSATFSP-EL--ADLTIFVIDVAAGDKIPR--KGG---------PGITRSDLLVINKIDLAPMVGAD 156 (199)
T ss_pred CCCEEEEECCCCCcccccch-hh--hCcEEEEEEcchhhhhhh--hhH---------hHhhhccEEEEEhhhcccccccc
Confidence 45677888888421111111 11 688999999987655321 111 12223 899999999753 22
Q ss_pred HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 92 KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
...+.+.++.. +...+++++||++|+|++++++++.+..+
T Consensus 157 ~~~~~~~~~~~---~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 157 LGVMERDAKKM---RGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 33333333221 22456999999999999999999998764
No 301
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.70 E-value=1.4e-07 Score=73.20 Aligned_cols=68 Identities=22% Similarity=0.168 Sum_probs=53.5
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 87 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 87 (137)
.+..++++||||+.+|.......++.+|++++|+|+.+.-......-| ..+. ..++|+++++||+|..
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~-~~~~----~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL----GERIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHH-HHHH----HCCCCEEEEEECCccc
Confidence 367899999999999999898899999999999999876433322222 2232 2578999999999987
No 302
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.68 E-value=4e-07 Score=63.02 Aligned_cols=107 Identities=13% Similarity=-0.004 Sum_probs=66.8
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHH
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKED 94 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~ 94 (137)
.++.+.+.||+|..... ...+..+|.++++.+.. +.+++......+ .++|.++++||+|+........
T Consensus 125 ~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el~~~~~~l------~~~~~ivv~NK~Dl~~~~~~~~ 192 (300)
T TIGR00750 125 AGYDVIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDLQGIKAGL------MEIADIYVVNKADGEGATNVTI 192 (300)
T ss_pred CCCCEEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHHHHHHHHH------hhhccEEEEEcccccchhHHHH
Confidence 47889999999964222 22466788888885443 233333333323 4577899999999976543221
Q ss_pred HHHH----hCCCCC--CCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 95 LMEQ----MGLKSI--TDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 95 ~~~~----~~~~~~--~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
.... +..... .....+++++||++++|++++++++.+..
T Consensus 193 ~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 193 ARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred HHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 1111 111001 11123589999999999999999998764
No 303
>PRK13796 GTPase YqeH; Provisional
Probab=98.67 E-value=7.4e-08 Score=68.27 Aligned_cols=97 Identities=24% Similarity=0.277 Sum_probs=56.6
Q ss_pred ccHHhHHHHhccCC-EEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHHHhCC--CCC
Q 032598 29 RFRSMWERYCRAVS-AIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-KEDLMEQMGL--KSI 104 (137)
Q Consensus 29 ~~~~~~~~~~~~~~-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~--~~~ 104 (137)
.+..... .+..++ .+++|+|+.+... .|...+.+.. .+.|+++|+||+|+..... ...+...+.. ...
T Consensus 58 ~~~~~l~-~i~~~~~lIv~VVD~~D~~~-----s~~~~L~~~~--~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~ 129 (365)
T PRK13796 58 DFLKLLN-GIGDSDALVVNVVDIFDFNG-----SWIPGLHRFV--GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKEL 129 (365)
T ss_pred HHHHHHH-hhcccCcEEEEEEECccCCC-----chhHHHHHHh--CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhc
Confidence 4444433 344445 8999999988532 2222332221 3678999999999965322 2222111100 000
Q ss_pred CCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 105 TDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 105 ~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
+.....++.+||+++.|++++++.+.+..
T Consensus 130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 130 GLRPVDVVLISAQKGHGIDELLEAIEKYR 158 (365)
T ss_pred CCCcCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 00111478999999999999999997653
No 304
>PTZ00416 elongation factor 2; Provisional
Probab=98.65 E-value=2.3e-07 Score=72.03 Aligned_cols=67 Identities=24% Similarity=0.265 Sum_probs=52.7
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 87 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 87 (137)
+..+.++||||+.++.......++.+|++++|+|+.+.-..+.. ..+..+.. .++|+++++||+|+.
T Consensus 91 ~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 91 PFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE-TVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred ceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH-HHHHHHHH----cCCCEEEEEEChhhh
Confidence 67899999999999988888889999999999999885333322 22233322 468999999999987
No 305
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.62 E-value=3.3e-07 Score=70.32 Aligned_cols=69 Identities=26% Similarity=0.261 Sum_probs=52.4
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 88 (137)
++..+.++||||+.++.......++.+|++++|+|+......+.. ..+..... .++|.++++||+|+..
T Consensus 85 ~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~-~~~~~~~~----~~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 85 KEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTE-TVLRQALR----ERVKPVLFINKVDRLI 153 (731)
T ss_pred CcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHH-HHHHHHHH----cCCCeEEEEECchhhc
Confidence 578999999999999988888899999999999999875333222 22222222 3467899999999763
No 306
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.58 E-value=1.4e-06 Score=62.43 Aligned_cols=51 Identities=22% Similarity=0.230 Sum_probs=34.7
Q ss_pred CCcEEEEeeCCCCCCCCC-HHHHHHHhCCCCCCCCceeEEEeecccCCChHH-HHHHHHHh
Q 032598 74 GIPLLVLGNKIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCKNSTNIDT-VIDWLVKH 132 (137)
Q Consensus 74 ~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~-~~~~i~~~ 132 (137)
.+|+++++||.|...... ...+.+. ....++++||+.+.++++ +.+.+.+.
T Consensus 217 ~KPvI~VlNK~D~~~~~~~l~~i~~~--------~~~~vvpISA~~e~~l~~~l~~~i~~~ 269 (396)
T PRK09602 217 SKPMVIAANKADLPPAEENIERLKEE--------KYYIVVPTSAEAELALRRAAKAGLIDY 269 (396)
T ss_pred CCCEEEEEEchhcccchHHHHHHHhc--------CCCcEEEEcchhhhhHHHHHHHhHHhh
Confidence 589999999999753222 2222222 123489999999999988 66666554
No 307
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.57 E-value=7.1e-07 Score=60.24 Aligned_cols=120 Identities=18% Similarity=0.148 Sum_probs=70.9
Q ss_pred CCEEEEEEecCCcc-cc-----HHhHHHHhcc--CCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcEEEEeeCCC
Q 032598 15 GNVTIKLWDLGGQP-RF-----RSMWERYCRA--VSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPLLVLGNKID 85 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~-~~-----~~~~~~~~~~--~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D 85 (137)
+.+..-++|||||- .| .+.+-..+.. --.+++|+|.....+..... ..+-++. ..-....|++++.||+|
T Consensus 114 ~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcS-ilyktklp~ivvfNK~D 192 (366)
T KOG1532|consen 114 EEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACS-ILYKTKLPFIVVFNKTD 192 (366)
T ss_pred cccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHH-HHHhccCCeEEEEeccc
Confidence 34678899999983 22 1222222332 45777888865544333222 2222221 11225799999999999
Q ss_pred CCCCCCH-------HHHHHHhCCCC--C--------------CCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 86 KPEALSK-------EDLMEQMGLKS--I--------------TDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 86 ~~~~~~~-------~~~~~~~~~~~--~--------------~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+.+..-. +.+.+.++... . -.+.+..+-+||.+|+|.+++|..+-+.+.+
T Consensus 193 v~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdE 265 (366)
T KOG1532|consen 193 VSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDE 265 (366)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHH
Confidence 9875322 22222222100 0 1245668999999999999999999887754
No 308
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=2.5e-06 Score=61.60 Aligned_cols=123 Identities=15% Similarity=0.120 Sum_probs=74.3
Q ss_pred EEEeCCEEEEEEecCCccc-cH--------HhHHHHhccCCEEEEEEeC--CCCCChHHHHHHHHHHhc-----CCCCCC
Q 032598 11 KVTKGNVTIKLWDLGGQPR-FR--------SMWERYCRAVSAIVYVVDA--ADYDNLPVSRSELHDLLS-----KPSLNG 74 (137)
Q Consensus 11 ~~~~~~~~~~~~Dt~g~~~-~~--------~~~~~~~~~~~~~i~v~d~--~~~~~~~~~~~~~~~~~~-----~~~~~~ 74 (137)
.++..++.+.+.||+|... .. ......++.||.+++|+|+ ++.++...+.+.++..-. ......
T Consensus 310 ~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~ 389 (531)
T KOG1191|consen 310 QVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEK 389 (531)
T ss_pred EeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccc
Confidence 3667899999999999755 11 1223337789999999999 333332222222222211 112234
Q ss_pred CcEEEEeeCCCCCCCCC-HHHHHHHhCCCCCCCCcee-EEEeecccCCChHHHHHHHHHhhh
Q 032598 75 IPLLVLGNKIDKPEALS-KEDLMEQMGLKSITDREVC-CYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 75 ~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
.|++++.||.|+....+ .......+... ......+ ..++|+++++|++.|...+.+.+.
T Consensus 390 ~~~i~~~nk~D~~s~~~~~~~~~~~~~~~-~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~ 450 (531)
T KOG1191|consen 390 QRIILVANKSDLVSKIPEMTKIPVVYPSA-EGRSVFPIVVEVSCTTKEGCERLSTALLNIVE 450 (531)
T ss_pred cceEEEechhhccCccccccCCceecccc-ccCcccceEEEeeechhhhHHHHHHHHHHHHH
Confidence 78999999999976622 11111111111 1111223 456999999999999999987764
No 309
>PRK01889 GTPase RsgA; Reviewed
Probab=98.46 E-value=2.3e-06 Score=60.62 Aligned_cols=84 Identities=18% Similarity=0.177 Sum_probs=55.8
Q ss_pred hccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecc
Q 032598 38 CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCK 117 (137)
Q Consensus 38 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 117 (137)
..++|.+++|+++........+.+++..+. ..++|.++++||+|+.+. .......+... .....++.+||+
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~----~~~i~piIVLNK~DL~~~--~~~~~~~~~~~---~~g~~Vi~vSa~ 180 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAW----ESGAEPVIVLTKADLCED--AEEKIAEVEAL---APGVPVLAVSAL 180 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHH----HcCCCEEEEEEChhcCCC--HHHHHHHHHHh---CCCCcEEEEECC
Confidence 467899999999964444444545544432 257788999999999754 21111222111 123458999999
Q ss_pred cCCChHHHHHHHH
Q 032598 118 NSTNIDTVIDWLV 130 (137)
Q Consensus 118 ~~~~v~~~~~~i~ 130 (137)
+++|++++..++.
T Consensus 181 ~g~gl~~L~~~L~ 193 (356)
T PRK01889 181 DGEGLDVLAAWLS 193 (356)
T ss_pred CCccHHHHHHHhh
Confidence 9999999998874
No 310
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.44 E-value=1e-06 Score=57.79 Aligned_cols=103 Identities=16% Similarity=0.187 Sum_probs=61.4
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HH
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KE 93 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~ 93 (137)
+..+.+.+|.|.-.... .+-...+..+.|+|..+.+.... . ... ....|.++++||+|+.+... ..
T Consensus 102 ~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~~--~-~~~------~~~~a~iiv~NK~Dl~~~~~~~~~ 169 (207)
T TIGR00073 102 DIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKPL--K-YPG------MFKEADLIVINKADLAEAVGFDVE 169 (207)
T ss_pred CCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchhh--h-hHh------HHhhCCEEEEEHHHccccchhhHH
Confidence 45778888888311111 11123455567888876442111 1 011 13467899999999975422 22
Q ss_pred HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 94 DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
+....+... .+..+++++||++|+|++++++++.+..
T Consensus 170 ~~~~~l~~~---~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 170 KMKADAKKI---NPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred HHHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 333333211 1245699999999999999999998754
No 311
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.44 E-value=1.1e-06 Score=58.45 Aligned_cols=99 Identities=8% Similarity=0.013 Sum_probs=57.7
Q ss_pred eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE-EEEeeCCCCCCCCC-
Q 032598 14 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL-LVLGNKIDKPEALS- 91 (137)
Q Consensus 14 ~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~~~~~~- 91 (137)
.++.++.++||||.. .......+.+|.+++|+|++........ ..+..+ .. .+.|. ++++||+|+.+...
T Consensus 80 ~~~~~i~~vDtPg~~---~~~l~~ak~aDvVllviDa~~~~~~~~~-~i~~~l-~~---~g~p~vi~VvnK~D~~~~~~~ 151 (225)
T cd01882 80 GKKRRLTFIECPNDI---NAMIDIAKVADLVLLLIDASFGFEMETF-EFLNIL-QV---HGFPRVMGVLTHLDLFKKNKT 151 (225)
T ss_pred cCCceEEEEeCCchH---HHHHHHHHhcCEEEEEEecCcCCCHHHH-HHHHHH-HH---cCCCeEEEEEeccccCCcHHH
Confidence 467889999999864 2223456889999999999865433221 222222 21 35675 45999999864322
Q ss_pred HHHHHHHhCC--CCCCCCceeEEEeecccCC
Q 032598 92 KEDLMEQMGL--KSITDREVCCYMISCKNST 120 (137)
Q Consensus 92 ~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~ 120 (137)
..+....+.. ........+++.+||++.-
T Consensus 152 ~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 152 LRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred HHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 2222222211 0000123479999998763
No 312
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=9.2e-07 Score=61.52 Aligned_cols=114 Identities=14% Similarity=0.106 Sum_probs=69.3
Q ss_pred eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHH
Q 032598 14 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE 93 (137)
Q Consensus 14 ~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~ 93 (137)
++..++++.|+||+......+-...+-.|..++|+|.......+...-+ -.-.......++|.||+|...+....
T Consensus 67 ~e~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcL-----iig~~~c~klvvvinkid~lpE~qr~ 141 (522)
T KOG0461|consen 67 GEQLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECL-----IIGELLCKKLVVVINKIDVLPENQRA 141 (522)
T ss_pred cccceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhh-----hhhhhhccceEEEEeccccccchhhh
Confidence 4678999999999977666555556668999999999875322211111 11111345578889999875543221
Q ss_pred --------HHHHHhCCCCCCCCceeEEEeecccC----CChHHHHHHHHHhh
Q 032598 94 --------DLMEQMGLKSITDREVCCYMISCKNS----TNIDTVIDWLVKHS 133 (137)
Q Consensus 94 --------~~~~~~~~~~~~~~~~~~~~~Sa~~~----~~v~~~~~~i~~~~ 133 (137)
.....+..-.. ..+.+++++||+.| +++.++.+.+-+.+
T Consensus 142 ski~k~~kk~~KtLe~t~f-~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~i 192 (522)
T KOG0461|consen 142 SKIEKSAKKVRKTLESTGF-DGNSPIVEVSAADGYFKEEMIQELKEALESRI 192 (522)
T ss_pred hHHHHHHHHHHHHHHhcCc-CCCCceeEEecCCCccchhHHHHHHHHHHHhh
Confidence 12222221111 12467999999999 56666666555444
No 313
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.42 E-value=6.9e-06 Score=48.81 Aligned_cols=71 Identities=23% Similarity=0.192 Sum_probs=45.6
Q ss_pred ceeeEEEeCCEEEEEEecCCcccc---------HHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRF---------RSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~---------~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
..+..+...+..+.++||||.... .......+..+|++++|+|+++.. -+.....+..+ . .+.|+
T Consensus 37 ~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~-~~~~~~~~~~l----~-~~~~~ 110 (116)
T PF01926_consen 37 PVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPI-TEDDKNILREL----K-NKKPI 110 (116)
T ss_dssp EEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHS-HHHHHHHHHHH----H-TTSEE
T ss_pred eeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCC-CHHHHHHHHHH----h-cCCCE
Confidence 333455667889999999996432 111233357899999999977621 12222333333 2 67999
Q ss_pred EEEeeC
Q 032598 78 LVLGNK 83 (137)
Q Consensus 78 ivv~nK 83 (137)
++|+||
T Consensus 111 i~v~NK 116 (116)
T PF01926_consen 111 ILVLNK 116 (116)
T ss_dssp EEEEES
T ss_pred EEEEcC
Confidence 999998
No 314
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.41 E-value=5.7e-06 Score=58.38 Aligned_cols=112 Identities=15% Similarity=0.127 Sum_probs=71.8
Q ss_pred CEEEEEEecCCccccHH-hHHHH-hccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHH
Q 032598 16 NVTIKLWDLGGQPRFRS-MWERY-CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE 93 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~-~~~~~-~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~ 93 (137)
+--+.+.||.|+++|-. .++.. -++.|..++++.+++..+- ..+..-.+ .....+|++++.+|+|+......+
T Consensus 200 DklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~--~tkEHLgi---~~a~~lPviVvvTK~D~~~ddr~~ 274 (527)
T COG5258 200 DKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTK--MTKEHLGI---ALAMELPVIVVVTKIDMVPDDRFQ 274 (527)
T ss_pred ccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcch--hhhHhhhh---hhhhcCCEEEEEEecccCcHHHHH
Confidence 45689999999998854 33333 3669999999999885432 12222222 223679999999999998764432
Q ss_pred ----HHHHHhCCC---C----------------CCCC-ceeEEEeecccCCChHHHHHHHHHh
Q 032598 94 ----DLMEQMGLK---S----------------ITDR-EVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 94 ----~~~~~~~~~---~----------------~~~~-~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
++...|+.. . ...+ -.+++.+|+.+|+|++-+.+-+...
T Consensus 275 ~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~L 337 (527)
T COG5258 275 GVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLLL 337 (527)
T ss_pred HHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHhC
Confidence 233333210 0 0112 4678999999999987666555443
No 315
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.40 E-value=1.2e-07 Score=67.32 Aligned_cols=86 Identities=26% Similarity=0.217 Sum_probs=66.7
Q ss_pred EEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC-
Q 032598 11 KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA- 89 (137)
Q Consensus 11 ~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~- 89 (137)
.+++++.+++++||||+.+|+-..+.+++-.||++.|+|.+..-..+.+.-|.+ ....++|.+.+.||+|....
T Consensus 96 ~fdwkg~rinlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrq-----adk~~ip~~~finkmdk~~an 170 (753)
T KOG0464|consen 96 NFDWKGHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ-----ADKFKIPAHCFINKMDKLAAN 170 (753)
T ss_pred ecccccceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehh-----ccccCCchhhhhhhhhhhhhh
Confidence 577899999999999999999999999999999999999987644444444532 23457999999999998654
Q ss_pred --CCHHHHHHHhCC
Q 032598 90 --LSKEDLMEQMGL 101 (137)
Q Consensus 90 --~~~~~~~~~~~~ 101 (137)
..++.+.+.++.
T Consensus 171 fe~avdsi~ekl~a 184 (753)
T KOG0464|consen 171 FENAVDSIEEKLGA 184 (753)
T ss_pred hhhHHHHHHHHhCC
Confidence 234556666653
No 316
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.36 E-value=1.2e-05 Score=52.18 Aligned_cols=124 Identities=13% Similarity=0.033 Sum_probs=70.4
Q ss_pred cceeeEEEeCCEEEEEEecCCccccH-------HhHHH----HhccCCEEEEEEeCCCCCChHH--HHHHHHHHhcCCCC
Q 032598 6 GFNMRKVTKGNVTIKLWDLGGQPRFR-------SMWER----YCRAVSAIVYVVDAADYDNLPV--SRSELHDLLSKPSL 72 (137)
Q Consensus 6 ~~~~~~~~~~~~~~~~~Dt~g~~~~~-------~~~~~----~~~~~~~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~ 72 (137)
..+.......+.++.++||||-.... ..... ...+.+++++|+++.. .+..+ ...++...... .
T Consensus 38 ~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~--~ 114 (196)
T cd01852 38 TCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGE--K 114 (196)
T ss_pred ccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhCh--H
Confidence 34445555678899999999964321 11111 1356899999999887 33222 22333333221 1
Q ss_pred CCCcEEEEeeCCCCCCCCCHHH--------HHHHhCCCCCCCCceeEEE-e--ecccCCChHHHHHHHHHhhhh
Q 032598 73 NGIPLLVLGNKIDKPEALSKED--------LMEQMGLKSITDREVCCYM-I--SCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 73 ~~~p~ivv~nK~D~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~-~--Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
.-.+++++.+++|........+ +...+.. ++ .+.+.+. . |+..+.++++|++.|.+.+.+
T Consensus 115 ~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~--c~-~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 115 VLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEK--CG-GRYVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred hHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHH--hC-CeEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 1257899999999765433222 1111111 01 1111111 1 366788899999999988875
No 317
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.34 E-value=8e-06 Score=55.19 Aligned_cols=118 Identities=11% Similarity=0.133 Sum_probs=75.3
Q ss_pred eCCEEEEEEecCCccc-------cHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 032598 14 KGNVTIKLWDLGGQPR-------FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 86 (137)
Q Consensus 14 ~~~~~~~~~Dt~g~~~-------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 86 (137)
+++-.+.+||+||.++ ++.....++...|.+++++++.++.--.+...+.+-+..- -+.|+++++|.+|+
T Consensus 84 ~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~---~~~~~i~~VtQ~D~ 160 (296)
T COG3596 84 YDGENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILG---LDKRVLFVVTQADR 160 (296)
T ss_pred ccccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhc---cCceeEEEEehhhh
Confidence 3457899999999754 5667778889999999999999864333333333322221 23889999999998
Q ss_pred CCCC---------CHHHHHHHhCC-----CCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 87 PEAL---------SKEDLMEQMGL-----KSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 87 ~~~~---------~~~~~~~~~~~-----~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
..+- +...+...+.. ...-..-.+++..|+..+.|++++...++..+-
T Consensus 161 a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 161 AEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred hccccccccccCCCCHHHHHHHHHHHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 6541 11111111100 000011224677888999999999999998763
No 318
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=98.32 E-value=2.4e-06 Score=44.00 Aligned_cols=43 Identities=23% Similarity=0.413 Sum_probs=29.7
Q ss_pred CCEEEEEEeCCC--CCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCC
Q 032598 41 VSAIVYVVDAAD--YDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 85 (137)
Q Consensus 41 ~~~~i~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 85 (137)
.++++|++|++. ..++++...++..+... +++.|+++|.||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~--F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPL--FPNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH--TTTS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHHHHHHHHHHHH--cCCCCEEEEEeccC
Confidence 689999999997 46778777888888664 45899999999998
No 319
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=2.3e-06 Score=63.94 Aligned_cols=68 Identities=26% Similarity=0.342 Sum_probs=55.1
Q ss_pred eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 032598 14 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 86 (137)
Q Consensus 14 ~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 86 (137)
++.+-+++.||||+..+....-..++.+|++++|+|+.+.-.+..-+...+.+ ..+.|+++++||+|.
T Consensus 194 ~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhai-----q~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 194 GKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAI-----QNRLPIVVVINKVDR 261 (971)
T ss_pred CceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHH-----hccCcEEEEEehhHH
Confidence 34577999999999999999999999999999999999876665443333333 256999999999995
No 320
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.23 E-value=1.2e-05 Score=55.16 Aligned_cols=43 Identities=16% Similarity=0.209 Sum_probs=26.9
Q ss_pred cCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 032598 40 AVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 40 ~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 88 (137)
.+++++++++.+.. .+.... ..+..+. ..+|+++|+||+|+..
T Consensus 114 rvh~~ly~i~~~~~-~l~~~D~~~lk~l~-----~~v~vi~VinK~D~l~ 157 (276)
T cd01850 114 RVHACLYFIEPTGH-GLKPLDIEFMKRLS-----KRVNIIPVIAKADTLT 157 (276)
T ss_pred ceEEEEEEEeCCCC-CCCHHHHHHHHHHh-----ccCCEEEEEECCCcCC
Confidence 36788888887652 222221 2222221 2589999999999965
No 321
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=2.5e-05 Score=54.42 Aligned_cols=107 Identities=16% Similarity=0.104 Sum_probs=69.9
Q ss_pred ceeeEEEeC--CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCC
Q 032598 7 FNMRKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 84 (137)
Q Consensus 7 ~~~~~~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 84 (137)
+|..++.++ ...+.=.|+||+.+|.+.+-....+-|+.|+|+.++|.. ..+.++.+-.. ++... ..+++++||.
T Consensus 105 In~aHveYeTa~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~-MPQTrEHlLLA-rQVGV--~~ivvfiNKv 180 (449)
T KOG0460|consen 105 INAAHVEYETAKRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGP-MPQTREHLLLA-RQVGV--KHIVVFINKV 180 (449)
T ss_pred EeeeeeeeeccccccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCC-CcchHHHHHHH-HHcCC--ceEEEEEecc
Confidence 455555544 456677899999999887777778899999999999954 33333333222 22222 3478889999
Q ss_pred CCCCCCCH-----HHHHHHhCCCCCCCCceeEEEeecc
Q 032598 85 DKPEALSK-----EDLMEQMGLKSITDREVCCYMISCK 117 (137)
Q Consensus 85 D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~ 117 (137)
|+.+.... -++.+.|....++..+++++.-||+
T Consensus 181 D~V~d~e~leLVEmE~RElLse~gf~Gd~~PvI~GSAL 218 (449)
T KOG0460|consen 181 DLVDDPEMLELVEMEIRELLSEFGFDGDNTPVIRGSAL 218 (449)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCCCCCCCeeecchh
Confidence 99844322 2344455444555567788887774
No 322
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.05 E-value=6e-05 Score=55.69 Aligned_cols=111 Identities=17% Similarity=0.200 Sum_probs=76.1
Q ss_pred EEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC
Q 032598 11 KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL 90 (137)
Q Consensus 11 ~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 90 (137)
.+.++.-.+.+-|.+-. ....+...- ..||.++++||++++.++.......+..... ...|+++|+.|+|+.+..
T Consensus 468 ~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~ 542 (625)
T KOG1707|consen 468 EVKGQQKYLILREIGED-DQDFLTSKE-AACDVACLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVP 542 (625)
T ss_pred eeccccceEEEeecCcc-ccccccCcc-ceeeeEEEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhh
Confidence 34455566677776654 222222222 6799999999999999999887765544332 679999999999997643
Q ss_pred -----CHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 91 -----SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 91 -----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
...+.+..++.. +.+.+|.++.-. .++|..|+.++.
T Consensus 543 Q~~~iqpde~~~~~~i~-------~P~~~S~~~~~s-~~lf~kL~~~A~ 583 (625)
T KOG1707|consen 543 QRYSIQPDEFCRQLGLP-------PPIHISSKTLSS-NELFIKLATMAQ 583 (625)
T ss_pred hccCCChHHHHHhcCCC-------CCeeeccCCCCC-chHHHHHHHhhh
Confidence 236777777764 356677774333 889988887654
No 323
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=0.00012 Score=48.99 Aligned_cols=118 Identities=19% Similarity=0.231 Sum_probs=72.5
Q ss_pred CCEEEEEEecCCccccH---HhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhc-CCCCCCCcEEEEeeCCCCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFR---SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLS-KPSLNGIPLLVLGNKIDKPEAL 90 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~---~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~p~ivv~nK~D~~~~~ 90 (137)
.-+++++||.|||..+- --....++++.++++|+|+.+. -.+.+.++...+.+ ..-.+++.+=++..|.|.....
T Consensus 73 sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd 151 (347)
T KOG3887|consen 73 SFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDD 151 (347)
T ss_pred hhcceEEeecCCccccCCCccCHHHHHhccCeEEEEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchh
Confidence 44789999999996432 1234458999999999999763 22333333332222 2234788899999999976542
Q ss_pred CH--------HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 91 SK--------EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 91 ~~--------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
.. +...+.+.......-.+.|+.+|-. ..++.+.|.+++..+.
T Consensus 152 ~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSIy-DHSIfEAFSkvVQkLi 202 (347)
T KOG3887|consen 152 FKIETQRDIHQRTNDELADAGLEKVQVSFYLTSIY-DHSIFEAFSKVVQKLI 202 (347)
T ss_pred hhhhhHHHHHHHhhHHHHhhhhccceEEEEEeeec-chHHHHHHHHHHHHHh
Confidence 21 1222333322222234556777766 4568899988887764
No 324
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.95 E-value=7.2e-05 Score=55.63 Aligned_cols=84 Identities=20% Similarity=0.184 Sum_probs=60.9
Q ss_pred EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC
Q 032598 12 VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS 91 (137)
Q Consensus 12 ~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 91 (137)
+.+.+.+++++||||+-+|.-..+..++-.||.|+|+++...-.-+...-|.+ ....+.|.+.++||+|......
T Consensus 99 ~~w~~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ-----~~ry~vP~i~FiNKmDRmGa~~ 173 (721)
T KOG0465|consen 99 FTWRDYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQ-----MKRYNVPRICFINKMDRMGASP 173 (721)
T ss_pred eeeccceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHH-----HHhcCCCeEEEEehhhhcCCCh
Confidence 45678999999999999999888889999999999999876422121222322 2225799999999999876644
Q ss_pred H---HHHHHHhC
Q 032598 92 K---EDLMEQMG 100 (137)
Q Consensus 92 ~---~~~~~~~~ 100 (137)
. .++...++
T Consensus 174 ~~~l~~i~~kl~ 185 (721)
T KOG0465|consen 174 FRTLNQIRTKLN 185 (721)
T ss_pred HHHHHHHHhhcC
Confidence 3 34444444
No 325
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=97.94 E-value=1.7e-05 Score=56.30 Aligned_cols=122 Identities=16% Similarity=0.112 Sum_probs=74.1
Q ss_pred cceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCC---ChHHHHHHHHHHhcCCCCCCCcEEEEee
Q 032598 6 GFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD---NLPVSRSELHDLLSKPSLNGIPLLVLGN 82 (137)
Q Consensus 6 ~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~p~ivv~n 82 (137)
+.-...+......+++.|+||+..|-..+-....+||.-++|+++...+ .|+.--+..+...-.....-...++++|
T Consensus 146 EvGrA~FEte~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vN 225 (501)
T KOG0459|consen 146 EVGRAYFETENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLIN 225 (501)
T ss_pred eeeeEEEEecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEE
Confidence 3333456667889999999999999877777788899999999875421 2222111111111111112345789999
Q ss_pred CCCCCCCCCH--------HHHHHHhCCCCC-CCCceeEEEeecccCCChHHHHH
Q 032598 83 KIDKPEALSK--------EDLMEQMGLKSI-TDREVCCYMISCKNSTNIDTVID 127 (137)
Q Consensus 83 K~D~~~~~~~--------~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~~~~ 127 (137)
|+|.+...-. .++...+....+ ......++++|..+|.++++...
T Consensus 226 KMddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 226 KMDDPTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred eccCCccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 9997654211 122222221122 23467799999999999887543
No 326
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=97.92 E-value=3.6e-05 Score=50.97 Aligned_cols=75 Identities=28% Similarity=0.471 Sum_probs=53.5
Q ss_pred CCEEEEEEecCCccccH-----HhHHHHhccCCEEEEEEeCCCCC---ChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 032598 15 GNVTIKLWDLGGQPRFR-----SMWERYCRAVSAIVYVVDAADYD---NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 86 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~-----~~~~~~~~~~~~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 86 (137)
++.-+.+||++|++.+- +...+-++..+++++|||+...+ .+...++-++.+++. .+...+.....|+|+
T Consensus 51 Gnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~--SP~AkiF~l~hKmDL 128 (295)
T KOG3886|consen 51 GNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQN--SPEAKIFCLLHKMDL 128 (295)
T ss_pred hhheeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhc--CCcceEEEEEeechh
Confidence 45788999999998543 23444578899999999998753 344444555666654 255667888999999
Q ss_pred CCCCC
Q 032598 87 PEALS 91 (137)
Q Consensus 87 ~~~~~ 91 (137)
.....
T Consensus 129 v~~d~ 133 (295)
T KOG3886|consen 129 VQEDA 133 (295)
T ss_pred cccch
Confidence 76544
No 327
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=97.89 E-value=6.4e-05 Score=47.41 Aligned_cols=65 Identities=18% Similarity=0.114 Sum_probs=45.6
Q ss_pred CEEEEEEecCCccc----cHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCC
Q 032598 16 NVTIKLWDLGGQPR----FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 84 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~----~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 84 (137)
...+.++||||... ....+..+++.+|++++|.++....+-.+...+.+.... ....+++|.||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~----~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDP----DKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTT----TCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcC----CCCeEEEEEcCC
Confidence 45689999999743 336788889999999999999886554444444444432 233489999984
No 328
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.86 E-value=0.00019 Score=48.17 Aligned_cols=70 Identities=16% Similarity=0.142 Sum_probs=45.7
Q ss_pred CEEEEEEecCCccc-------------cHHhHHHHhcc-CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 16 NVTIKLWDLGGQPR-------------FRSMWERYCRA-VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~-------------~~~~~~~~~~~-~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
...++++||||... ...+...|++. .+.+++|+|+...-.-.+.......+ ...+.|+++|+
T Consensus 124 ~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~l----d~~~~rti~Vi 199 (240)
T smart00053 124 VLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEV----DPQGERTIGVI 199 (240)
T ss_pred CCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHH----HHcCCcEEEEE
Confidence 47899999999742 12355666774 56899999886532222222222222 22568999999
Q ss_pred eCCCCCCC
Q 032598 82 NKIDKPEA 89 (137)
Q Consensus 82 nK~D~~~~ 89 (137)
||+|..+.
T Consensus 200 TK~D~~~~ 207 (240)
T smart00053 200 TKLDLMDE 207 (240)
T ss_pred ECCCCCCc
Confidence 99998754
No 329
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.85 E-value=1.6e-05 Score=54.71 Aligned_cols=110 Identities=16% Similarity=0.203 Sum_probs=69.4
Q ss_pred EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHH--HHhcCCCCCCCcEEEEeeCCCCCCCCCHH-
Q 032598 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELH--DLLSKPSLNGIPLLVLGNKIDKPEALSKE- 93 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~--~~~~~~~~~~~p~ivv~nK~D~~~~~~~~- 93 (137)
..+.+.|+||++-.-+.+.....--|+.++++...++=+..+..+.+. ++.+. ..++++-||+|+.......
T Consensus 125 RHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~L-----khiiilQNKiDli~e~~A~e 199 (466)
T KOG0466|consen 125 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKL-----KHIIILQNKIDLIKESQALE 199 (466)
T ss_pred EEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhh-----ceEEEEechhhhhhHHHHHH
Confidence 467899999997665555444455688888887765322222222222 22222 4479999999997654332
Q ss_pred ---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 94 ---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 94 ---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
++...+. .....+.+++++||.-++|++-+.+.++..+
T Consensus 200 q~e~I~kFi~--~t~ae~aPiiPisAQlkyNId~v~eyivkkI 240 (466)
T KOG0466|consen 200 QHEQIQKFIQ--GTVAEGAPIIPISAQLKYNIDVVCEYIVKKI 240 (466)
T ss_pred HHHHHHHHHh--ccccCCCceeeehhhhccChHHHHHHHHhcC
Confidence 2222221 1112355799999999999999999888765
No 330
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.82 E-value=7.3e-05 Score=50.37 Aligned_cols=107 Identities=15% Similarity=0.161 Sum_probs=65.9
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HH
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-KE 93 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~ 93 (137)
-++.+.+++|.|.-+-.- ....-+|.+++|+.+.-.+..+.+..-+.++ +=++|+||+|...... ..
T Consensus 120 aG~D~IiiETVGvGQsE~---~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi---------aDi~vVNKaD~~gA~~~~~ 187 (266)
T PF03308_consen 120 AGFDVIIIETVGVGQSEV---DIADMADTVVLVLVPGLGDEIQAIKAGIMEI---------ADIFVVNKADRPGADRTVR 187 (266)
T ss_dssp TT-SEEEEEEESSSTHHH---HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH----------SEEEEE--SHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCccHH---HHHHhcCeEEEEecCCCccHHHHHhhhhhhh---------ccEEEEeCCChHHHHHHHH
Confidence 367788899966422221 2356699999999998877766544333333 2389999999654322 23
Q ss_pred HHHHHhCCCC--CCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 94 DLMEQMGLKS--ITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 94 ~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
++...+.... ......+++.+||.+++|++++.+.|.+.-
T Consensus 188 ~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 188 DLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp HHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4444443222 223456799999999999999999988643
No 331
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.78 E-value=0.00042 Score=47.75 Aligned_cols=86 Identities=20% Similarity=0.208 Sum_probs=58.3
Q ss_pred hccCCEEEEEEeCCCCC-ChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHH--HHHHHhCCCCCCCCceeEEEe
Q 032598 38 CRAVSAIVYVVDAADYD-NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE--DLMEQMGLKSITDREVCCYMI 114 (137)
Q Consensus 38 ~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 114 (137)
..+.|-.++|+.+.+++ +...+.+++-.+ ...++.-++++||+|+.+..... +....+... ....+.+
T Consensus 77 v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~a----e~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~-----gy~v~~~ 147 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFNTNLLDRYLVLA----EAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDI-----GYPVLFV 147 (301)
T ss_pred ccccceEEEEEeccCCCCCHHHHHHHHHHH----HHcCCcEEEEEEccccCcchHHHHHHHHHHHHhC-----CeeEEEe
Confidence 44578888899888874 444444544433 23567778889999998765544 233333322 3358999
Q ss_pred ecccCCChHHHHHHHHHh
Q 032598 115 SCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 115 Sa~~~~~v~~~~~~i~~~ 132 (137)
|++++++++++...+...
T Consensus 148 s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 148 SAKNGDGLEELAELLAGK 165 (301)
T ss_pred cCcCcccHHHHHHHhcCC
Confidence 999999999998877543
No 332
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=4.5e-05 Score=57.92 Aligned_cols=67 Identities=21% Similarity=0.201 Sum_probs=52.0
Q ss_pred eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCC
Q 032598 14 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 85 (137)
Q Consensus 14 ~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 85 (137)
.+++.++++|+||+-+|.+......+-+|+.+.++|+.+.-..+...-..+.+ ..+...++|+||+|
T Consensus 69 ~~~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~-----~~~~~~~lvinkid 135 (887)
T KOG0467|consen 69 HKDYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAW-----IEGLKPILVINKID 135 (887)
T ss_pred cCceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHH-----HccCceEEEEehhh
Confidence 36889999999999999999999999999999999998754333222222222 34566899999999
No 333
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.66 E-value=6.8e-05 Score=51.52 Aligned_cols=57 Identities=23% Similarity=0.303 Sum_probs=40.2
Q ss_pred CCcEEEEeeCCCCCCCC--CHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 74 GIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 74 ~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
..+-++++||+|+.... ........++.. .....++++||++|+|++++.+||.+..
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~l---np~a~I~~vSA~tGeGld~L~~~L~~~~ 288 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREV---NPEIEIILISATSGEGMDQWLNWLETQR 288 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhh---CCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45569999999997532 233343333221 2345699999999999999999998743
No 334
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.66 E-value=0.00011 Score=46.93 Aligned_cols=55 Identities=20% Similarity=0.195 Sum_probs=32.7
Q ss_pred CEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHHh
Q 032598 42 SAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQM 99 (137)
Q Consensus 42 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~ 99 (137)
|.+++|+|+.++.+-.. ..+..... ....+.|+++++||+|+.+..........+
T Consensus 1 DvVl~VvDar~p~~~~~--~~i~~~~~-l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~ 55 (172)
T cd04178 1 DVILEVLDARDPLGCRC--PQVEEAVL-QAGGNKKLVLVLNKIDLVPKENVEKWLKYL 55 (172)
T ss_pred CEEEEEEECCCCCCCCC--HHHHHHHH-hccCCCCEEEEEehhhcCCHHHHHHHHHHH
Confidence 78999999988633221 12222211 112468999999999997544433444443
No 335
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.64 E-value=0.0007 Score=46.61 Aligned_cols=109 Identities=15% Similarity=0.151 Sum_probs=69.5
Q ss_pred eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC-CH
Q 032598 14 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL-SK 92 (137)
Q Consensus 14 ~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~ 92 (137)
.-++.+.+++|.|.-+..- .-..-+|.+++|.-+.-.+..+.+..-..++ . =++|+||.|..... ..
T Consensus 141 AaG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEi------a---Di~vINKaD~~~A~~a~ 208 (323)
T COG1703 141 AAGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIMEI------A---DIIVINKADRKGAEKAA 208 (323)
T ss_pred hcCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhhh------h---heeeEeccChhhHHHHH
Confidence 3467888999976533322 1234589999988776666655544332222 2 38999999965432 12
Q ss_pred HHHHHHhCCCC----CCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 93 EDLMEQMGLKS----ITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 93 ~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
.++...+.... ......+++.+||..|+|+.++.+.+.+...
T Consensus 209 r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 209 RELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred HHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence 23333333322 2234567899999999999999999886543
No 336
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.47 E-value=0.0012 Score=44.56 Aligned_cols=47 Identities=23% Similarity=0.243 Sum_probs=34.1
Q ss_pred EEEeCCEEEEEEecCCccccHHhHHH-------HhccCCEEEEEEeCCCCCChH
Q 032598 11 KVTKGNVTIKLWDLGGQPRFRSMWER-------YCRAVSAIVYVVDAADYDNLP 57 (137)
Q Consensus 11 ~~~~~~~~~~~~Dt~g~~~~~~~~~~-------~~~~~~~~i~v~d~~~~~~~~ 57 (137)
.+.+.+.++++.|.||.-...+.... ..+.||.+++|+|++..+...
T Consensus 103 vi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~e~qr 156 (364)
T KOG1486|consen 103 VIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKSEDQR 156 (364)
T ss_pred eEEecCceEEEecCcccccccccCCCCCceEEEEeecccEEEEEecCCcchhHH
Confidence 35678999999999997544433222 246799999999999865433
No 337
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.42 E-value=0.00017 Score=46.54 Aligned_cols=80 Identities=16% Similarity=0.222 Sum_probs=49.5
Q ss_pred CEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH--HHHHHHhCCCCCCCCceeEEEeecccC
Q 032598 42 SAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK--EDLMEQMGLKSITDREVCCYMISCKNS 119 (137)
Q Consensus 42 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 119 (137)
+.-|+|+|.+..+.... +- ...... .=++|+||.|+...... +...+..+. -..+.+++++|+++|
T Consensus 119 ~~~v~VidvteGe~~P~--K~------gP~i~~-aDllVInK~DLa~~v~~dlevm~~da~~---~np~~~ii~~n~ktg 186 (202)
T COG0378 119 HLRVVVIDVTEGEDIPR--KG------GPGIFK-ADLLVINKTDLAPYVGADLEVMARDAKE---VNPEAPIIFTNLKTG 186 (202)
T ss_pred ceEEEEEECCCCCCCcc--cC------CCceeE-eeEEEEehHHhHHHhCccHHHHHHHHHH---hCCCCCEEEEeCCCC
Confidence 37789999887543110 00 100011 23899999999865432 222221111 123567999999999
Q ss_pred CChHHHHHHHHHhh
Q 032598 120 TNIDTVIDWLVKHS 133 (137)
Q Consensus 120 ~~v~~~~~~i~~~~ 133 (137)
+|+++++.|+....
T Consensus 187 ~G~~~~~~~i~~~~ 200 (202)
T COG0378 187 EGLDEWLRFIEPQA 200 (202)
T ss_pred cCHHHHHHHHHhhc
Confidence 99999999987654
No 338
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=97.40 E-value=0.0006 Score=50.50 Aligned_cols=116 Identities=16% Similarity=0.289 Sum_probs=80.1
Q ss_pred eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHH
Q 032598 14 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE 93 (137)
Q Consensus 14 ~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~ 93 (137)
++...+.+-|.+|.. -..|....|++||||..-+..+++.+..+...+..+.....+|+++++.+--.....+..
T Consensus 74 gqs~lLlirdeg~~~-----~aQft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv 148 (749)
T KOG0705|consen 74 GQSHLLLIRDEGGHP-----DAQFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRV 148 (749)
T ss_pred ccceEeeeecccCCc-----hhhhhhhccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccc
Confidence 444556666666632 245777899999999999999999988887777776666789999988876543332211
Q ss_pred HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 94 DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
.....-.....+.+.+.+++++|..|.+++..|+.+...+.
T Consensus 149 ~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~~~~~k~i 189 (749)
T KOG0705|consen 149 ITDDRARQLSAQMKRCSYYETCATYGLNVERVFQEVAQKIV 189 (749)
T ss_pred cchHHHHHHHHhcCccceeecchhhhhhHHHHHHHHHHHHH
Confidence 11111111122344567999999999999999999987664
No 339
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.00083 Score=47.67 Aligned_cols=70 Identities=20% Similarity=0.257 Sum_probs=47.6
Q ss_pred EEEEEecCCccc-----------cHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 032598 18 TIKLWDLGGQPR-----------FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 86 (137)
Q Consensus 18 ~~~~~Dt~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 86 (137)
+++++||||... |.....=+...+|.++++||+...+--++....+.++.. ..=.+-+|.||+|.
T Consensus 148 ~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG----~EdkiRVVLNKADq 223 (532)
T KOG1954|consen 148 SVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG----HEDKIRVVLNKADQ 223 (532)
T ss_pred heeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC----CcceeEEEeccccc
Confidence 589999999633 344555567889999999999876543333344444433 33446788999999
Q ss_pred CCCCC
Q 032598 87 PEALS 91 (137)
Q Consensus 87 ~~~~~ 91 (137)
.+...
T Consensus 224 Vdtqq 228 (532)
T KOG1954|consen 224 VDTQQ 228 (532)
T ss_pred cCHHH
Confidence 76533
No 340
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=97.39 E-value=0.00015 Score=43.17 Aligned_cols=78 Identities=15% Similarity=0.131 Sum_probs=52.3
Q ss_pred HhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeE
Q 032598 32 SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCC 111 (137)
Q Consensus 32 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (137)
.....+.+.+++++.|++.++..+++.. |...+... ...++|.++++||.|+.+..... .... ..+
T Consensus 38 ~~~~~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~~-~k~dl~~~~~~nk~dl~~~~~~~---~~~~--------~~~ 103 (124)
T smart00010 38 VYDPTSYESFDVVLQCWRVDDRDSADNK--NVPEVLVG-NKSDLPILVGGNRDVLEEERQVA---TEEG--------LEF 103 (124)
T ss_pred hccccccCCCCEEEEEEEccCHHHHHHH--hHHHHHhc-CCCCCcEEEEeechhhHhhCcCC---HHHH--------HHH
Confidence 3345567889999999999988777644 65555433 23568899999999984432211 1111 136
Q ss_pred EEeecccCCChH
Q 032598 112 YMISCKNSTNID 123 (137)
Q Consensus 112 ~~~Sa~~~~~v~ 123 (137)
.++|+++|+|+.
T Consensus 104 ~~~s~~~~~~~~ 115 (124)
T smart00010 104 AETSAKTPEEGE 115 (124)
T ss_pred HHHhCCCcchhh
Confidence 789999999985
No 341
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.34 E-value=0.0032 Score=44.92 Aligned_cols=103 Identities=17% Similarity=0.157 Sum_probs=65.3
Q ss_pred EEEEEEecCCccccHHhHHHHhcc--CCEEEEEEeCCCC--CChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH
Q 032598 17 VTIKLWDLGGQPRFRSMWERYCRA--VSAIVYVVDAADY--DNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK 92 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~~~~~~~~~~--~~~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 92 (137)
--++++|.+|+.+|....-+.+.+ .+..++|+++... ++-+ +.+-.+. .-++|++++.+|+|+......
T Consensus 249 KlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTr---EHLgl~~----AL~iPfFvlvtK~Dl~~~~~~ 321 (591)
T KOG1143|consen 249 KLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTR---EHLGLIA----ALNIPFFVLVTKMDLVDRQGL 321 (591)
T ss_pred ceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccH---HHHHHHH----HhCCCeEEEEEeeccccchhH
Confidence 458999999999887655555543 5778888877653 2222 2222221 247999999999999876433
Q ss_pred ----HHHHHHhCCCCC---------------------CCCceeEEEeecccCCChHHHH
Q 032598 93 ----EDLMEQMGLKSI---------------------TDREVCCYMISCKNSTNIDTVI 126 (137)
Q Consensus 93 ----~~~~~~~~~~~~---------------------~~~~~~~~~~Sa~~~~~v~~~~ 126 (137)
.++.+.+....+ ...-.+++-+|+.+|+|+.-+.
T Consensus 322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~ 380 (591)
T KOG1143|consen 322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLR 380 (591)
T ss_pred HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHH
Confidence 333333322111 1234668889999999976543
No 342
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=97.33 E-value=0.0039 Score=41.13 Aligned_cols=122 Identities=11% Similarity=0.080 Sum_probs=65.1
Q ss_pred ceeeEEEeCCEEEEEEecCCcccc-------HHhHHH----HhccCCEEEEEEeCCCCCCh--HHHHHHHHHHhcCCCCC
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRF-------RSMWER----YCRAVSAIVYVVDAADYDNL--PVSRSELHDLLSKPSLN 73 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~-------~~~~~~----~~~~~~~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~ 73 (137)
........++..+.++||||-... ...+.. ...+.+++++|+..... +. .....++..++.....
T Consensus 39 ~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r~-t~~~~~~l~~l~~~FG~~~~- 116 (212)
T PF04548_consen 39 CQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGRF-TEEDREVLELLQEIFGEEIW- 116 (212)
T ss_dssp -EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB--SHHHHHHHHHHHHHHCGGGG-
T ss_pred cceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCcc-hHHHHHHHHHHHHHccHHHH-
Confidence 334445678899999999995321 112222 23468999999998832 32 2233445555443222
Q ss_pred CCcEEEEeeCCCCCCCCCHHHHHH---------HhCCCCCCCCceeEEEeecc------cCCChHHHHHHHHHhhhhc
Q 032598 74 GIPLLVLGNKIDKPEALSKEDLME---------QMGLKSITDREVCCYMISCK------NSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 74 ~~p~ivv~nK~D~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~Sa~------~~~~v~~~~~~i~~~~~~~ 136 (137)
..++|+.+..|........+... .++. +. . .++..+.+ ....+.+|++.+-+.+.++
T Consensus 117 -k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~--c~-~--R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 117 -KHTIVVFTHADELEDDSLEDYLKKESNEALQELIEK--CG-G--RYHVFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp -GGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHH--TT-T--CEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -hHhhHHhhhccccccccHHHHHhccCchhHhHHhhh--cC-C--EEEEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 34889999998766554322111 1110 11 1 13433333 3456888888888777653
No 343
>PTZ00258 GTP-binding protein; Provisional
Probab=97.32 E-value=0.0058 Score=44.00 Aligned_cols=35 Identities=26% Similarity=0.216 Sum_probs=24.8
Q ss_pred EEEEEEecCCccccH----HhH---HHHhccCCEEEEEEeCC
Q 032598 17 VTIKLWDLGGQPRFR----SMW---ERYCRAVSAIVYVVDAA 51 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~----~~~---~~~~~~~~~~i~v~d~~ 51 (137)
.++.++||||..... .+. ...++.+|++++|+|+.
T Consensus 85 aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 85 AQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 459999999964321 222 23367899999999984
No 344
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.30 E-value=0.0011 Score=46.50 Aligned_cols=94 Identities=18% Similarity=0.174 Sum_probs=63.9
Q ss_pred ecCCc-cccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHHhCC
Q 032598 23 DLGGQ-PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGL 101 (137)
Q Consensus 23 Dt~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~ 101 (137)
+.||+ .++.......+...|.++-|+|+.++.+-.. ..++.+. .+.|.++++||+|+.......+....+..
T Consensus 16 ~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~--~~l~~~v-----~~k~~i~vlNK~DL~~~~~~~~W~~~~~~ 88 (322)
T COG1161 16 WFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN--PELERIV-----KEKPKLLVLNKADLAPKEVTKKWKKYFKK 88 (322)
T ss_pred CCCCchHHHHHHHHHhcccCCEEEEEEeccccccccC--ccHHHHH-----ccCCcEEEEehhhcCCHHHHHHHHHHHHh
Confidence 34666 4566777788999999999999999755322 1223332 34566999999999876665666666653
Q ss_pred CCCCCCceeEEEeecccCCChHHHHH
Q 032598 102 KSITDREVCCYMISCKNSTNIDTVID 127 (137)
Q Consensus 102 ~~~~~~~~~~~~~Sa~~~~~v~~~~~ 127 (137)
.. ....+.+|+..+.+...+..
T Consensus 89 ~~----~~~~~~v~~~~~~~~~~i~~ 110 (322)
T COG1161 89 EE----GIKPIFVSAKSRQGGKKIRK 110 (322)
T ss_pred cC----CCccEEEEeecccCccchHH
Confidence 21 23467888888887766663
No 345
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=97.24 E-value=0.008 Score=40.73 Aligned_cols=76 Identities=13% Similarity=0.099 Sum_probs=43.9
Q ss_pred EEeCCEEEEEEecCCccccHH----------hHHHHhc--cCCEEEEEEeCCCCC-ChH--HHHHHHHHHhcCCCCCCCc
Q 032598 12 VTKGNVTIKLWDLGGQPRFRS----------MWERYCR--AVSAIVYVVDAADYD-NLP--VSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 12 ~~~~~~~~~~~Dt~g~~~~~~----------~~~~~~~--~~~~~i~v~d~~~~~-~~~--~~~~~~~~~~~~~~~~~~p 76 (137)
...++.++.+|||||...... ....+++ ..+++++|..++... ... .+.+.+....... .-.+
T Consensus 74 ~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~--i~~~ 151 (249)
T cd01853 74 GTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPS--IWRN 151 (249)
T ss_pred EEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChh--hHhC
Confidence 445678999999999754411 1223343 578888887665432 222 2223333332211 1146
Q ss_pred EEEEeeCCCCCCC
Q 032598 77 LLVLGNKIDKPEA 89 (137)
Q Consensus 77 ~ivv~nK~D~~~~ 89 (137)
+++|.||+|....
T Consensus 152 ~ivV~T~~d~~~p 164 (249)
T cd01853 152 AIVVLTHAASSPP 164 (249)
T ss_pred EEEEEeCCccCCC
Confidence 9999999998644
No 346
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=97.18 E-value=0.0084 Score=41.84 Aligned_cols=73 Identities=18% Similarity=0.213 Sum_probs=42.7
Q ss_pred eCCEEEEEEecCCccccHHh-------HHHHh--ccCCEEEEEEeCCCC--CCh-HHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 14 KGNVTIKLWDLGGQPRFRSM-------WERYC--RAVSAIVYVVDAADY--DNL-PVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 14 ~~~~~~~~~Dt~g~~~~~~~-------~~~~~--~~~~~~i~v~d~~~~--~~~-~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
.++.++.++||||..+.... ...++ ...|++++|..++.. ... ..+.+.+...+... .-.+++++.
T Consensus 83 ~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~--iw~~~IVVf 160 (313)
T TIGR00991 83 RAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKD--IWRKSLVVL 160 (313)
T ss_pred ECCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhh--hhccEEEEE
Confidence 46889999999997654221 12222 258999999665532 212 22223333333211 124689999
Q ss_pred eCCCCCC
Q 032598 82 NKIDKPE 88 (137)
Q Consensus 82 nK~D~~~ 88 (137)
+++|...
T Consensus 161 Th~d~~~ 167 (313)
T TIGR00991 161 THAQFSP 167 (313)
T ss_pred ECCccCC
Confidence 9999763
No 347
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=97.04 E-value=0.0021 Score=44.88 Aligned_cols=104 Identities=18% Similarity=0.169 Sum_probs=62.5
Q ss_pred CEEEEEEecCCc---------cccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE----EEEee
Q 032598 16 NVTIKLWDLGGQ---------PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL----LVLGN 82 (137)
Q Consensus 16 ~~~~~~~Dt~g~---------~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~----ivv~n 82 (137)
+-.+-+.||.|- ..|.+... ....+|.++.|.|++.|.--.+....+ ..++....+..|. +=|=|
T Consensus 225 g~~vlltDTvGFisdLP~~LvaAF~ATLe-eVaeadlllHvvDiShP~ae~q~e~Vl-~vL~~igv~~~pkl~~mieVdn 302 (410)
T KOG0410|consen 225 GNFVLLTDTVGFISDLPIQLVAAFQATLE-EVAEADLLLHVVDISHPNAEEQRETVL-HVLNQIGVPSEPKLQNMIEVDN 302 (410)
T ss_pred CcEEEEeechhhhhhCcHHHHHHHHHHHH-HHhhcceEEEEeecCCccHHHHHHHHH-HHHHhcCCCcHHHHhHHHhhcc
Confidence 456788999884 23333332 256799999999999986433322222 2333323333443 33456
Q ss_pred CCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 83 KIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 83 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
|.|..+.....+ -+ ..+.+||++|+|++++.+.+-..+.
T Consensus 303 kiD~e~~~~e~E----~n---------~~v~isaltgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 303 KIDYEEDEVEEE----KN---------LDVGISALTGDGLEELLKAEETKVA 341 (410)
T ss_pred ccccccccCccc----cC---------CccccccccCccHHHHHHHHHHHhh
Confidence 666543322110 00 1578999999999999998876654
No 348
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.02 E-value=0.0012 Score=48.64 Aligned_cols=68 Identities=21% Similarity=0.193 Sum_probs=51.4
Q ss_pred eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 032598 14 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 86 (137)
Q Consensus 14 ~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 86 (137)
+.++.++++|.||+.+|.+..-..++-.||.+.|+|..+.-..+.-.-+.+++-. .+.=+++.||+|.
T Consensus 95 ~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E-----RIkPvlv~NK~DR 162 (842)
T KOG0469|consen 95 GNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE-----RIKPVLVMNKMDR 162 (842)
T ss_pred CcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh-----hccceEEeehhhH
Confidence 4578999999999999999999999999999999999876544433333333322 2333778999995
No 349
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=97.00 E-value=0.019 Score=41.78 Aligned_cols=82 Identities=15% Similarity=0.229 Sum_probs=45.2
Q ss_pred hc-cCCEEEEEE-eCC--C--CCChH-HHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH---HHHHHHhCCCCCCCC
Q 032598 38 CR-AVSAIVYVV-DAA--D--YDNLP-VSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK---EDLMEQMGLKSITDR 107 (137)
Q Consensus 38 ~~-~~~~~i~v~-d~~--~--~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~~~ 107 (137)
++ .++..++|. |.+ + .+.+. .-.+++..+.. .++|++++.||.|-...... .++.+.++.
T Consensus 141 I~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~----~~kPfiivlN~~dp~~~et~~l~~~l~eky~v------ 210 (492)
T TIGR02836 141 IQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKE----LNKPFIILLNSTHPYHPETEALRQELEEKYDV------ 210 (492)
T ss_pred HHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHHh----cCCCEEEEEECcCCCCchhHHHHHHHHHHhCC------
Confidence 55 789888888 764 1 11222 22245554433 57999999999994322222 123333332
Q ss_pred ceeEEEeeccc--CCChHHHHHHHHH
Q 032598 108 EVCCYMISCKN--STNIDTVIDWLVK 131 (137)
Q Consensus 108 ~~~~~~~Sa~~--~~~v~~~~~~i~~ 131 (137)
+++.+|+.. .+.+..+++.+..
T Consensus 211 --pvl~v~c~~l~~~DI~~il~~vL~ 234 (492)
T TIGR02836 211 --PVLAMDVESMRESDILSVLEEVLY 234 (492)
T ss_pred --ceEEEEHHHcCHHHHHHHHHHHHh
Confidence 356666643 3456666665543
No 350
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=96.99 E-value=0.0029 Score=46.57 Aligned_cols=71 Identities=15% Similarity=0.088 Sum_probs=49.2
Q ss_pred hccCCEEEEEEeCCCCCCh--HHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEee
Q 032598 38 CRAVSAIVYVVDAADYDNL--PVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMIS 115 (137)
Q Consensus 38 ~~~~~~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 115 (137)
+..+|.+|.++|+-++--| .++..+.... ..++..++++||+||.....+......+.. +++++++.|
T Consensus 172 lErSDivvqIVDARnPllfr~~dLe~Yvke~-----d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~-----~ni~~vf~S 241 (562)
T KOG1424|consen 172 LERSDIVVQIVDARNPLLFRSPDLEDYVKEV-----DPSKANVLLVNKADLLPPEQRVAWAEYFRQ-----NNIPVVFFS 241 (562)
T ss_pred HhhcceEEEEeecCCccccCChhHHHHHhcc-----ccccceEEEEehhhcCCHHHHHHHHHHHHh-----cCceEEEEe
Confidence 7789999999999986422 2222332222 244667999999999877666666666643 246788899
Q ss_pred ccc
Q 032598 116 CKN 118 (137)
Q Consensus 116 a~~ 118 (137)
|..
T Consensus 242 A~~ 244 (562)
T KOG1424|consen 242 ALA 244 (562)
T ss_pred ccc
Confidence 876
No 351
>KOG2484 consensus GTPase [General function prediction only]
Probab=96.97 E-value=0.0026 Score=45.44 Aligned_cols=71 Identities=17% Similarity=0.146 Sum_probs=48.5
Q ss_pred cccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHHhCC
Q 032598 28 PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGL 101 (137)
Q Consensus 28 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~ 101 (137)
..|.......+..+|+++-|+|+-||.+-.-- +.-..+++. ..+...|+|+||.|+...+.+.+....|+.
T Consensus 134 kaY~ke~rkvve~sDVVleVlDARDPlgtR~~-~vE~~V~~~--~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~ 204 (435)
T KOG2484|consen 134 KAYDKEFRKVVEASDVVLEVLDARDPLGTRCP-EVEEAVLQA--HGNKKLILVLNKIDLVPREVVEKWLVYLRR 204 (435)
T ss_pred HHHHHHHHHHHhhhheEEEeeeccCCCCCCCh-hHHHHHHhc--cCCceEEEEeehhccCCHHHHHHHHHHHHh
Confidence 34555566667889999999999998643211 111222222 244789999999999988777777777763
No 352
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=96.91 E-value=0.0047 Score=44.16 Aligned_cols=107 Identities=16% Similarity=0.129 Sum_probs=63.0
Q ss_pred EEEEEEecCCccccHHhHHHHhc--cCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHH
Q 032598 17 VTIKLWDLGGQPRFRSMWERYCR--AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKED 94 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~~~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~ 94 (137)
--++|+|.+|+++|-...-..+. -.|...+++-+.-. -.-...+.+-.. ..-+.|+++|.+|+|+......++
T Consensus 219 KviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG-IiGmTKEHLgLA----LaL~VPVfvVVTKIDMCPANiLqE 293 (641)
T KOG0463|consen 219 KVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG-IIGMTKEHLGLA----LALHVPVFVVVTKIDMCPANILQE 293 (641)
T ss_pred eeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc-ceeccHHhhhhh----hhhcCcEEEEEEeeccCcHHHHHH
Confidence 45799999999988654332222 25666666654431 111111122111 125799999999999976544332
Q ss_pred ----HHHHhCCC---------------------CCCCCceeEEEeecccCCChHHHHHH
Q 032598 95 ----LMEQMGLK---------------------SITDREVCCYMISCKNSTNIDTVIDW 128 (137)
Q Consensus 95 ----~~~~~~~~---------------------~~~~~~~~~~~~Sa~~~~~v~~~~~~ 128 (137)
+...++.. .-..+-|++|.+|-.+|+|++-+..-
T Consensus 294 tmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmF 352 (641)
T KOG0463|consen 294 TMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMF 352 (641)
T ss_pred HHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHH
Confidence 33333321 11234678999999999998765443
No 353
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=96.84 E-value=0.015 Score=37.05 Aligned_cols=67 Identities=16% Similarity=0.064 Sum_probs=48.4
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 88 (137)
+.+.+.++|||+.... .....+..+|.+++++.++. .+........+.+.. .+.|..+++||+|...
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~----~~~~~~vV~N~~~~~~ 157 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTP-SGLHDLERAVELVRH----FGIPVGVVINKYDLND 157 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHH----cCCCEEEEEeCCCCCc
Confidence 5788999999866432 33456788999999998874 466666666655533 3567899999999754
No 354
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=96.64 E-value=0.03 Score=39.42 Aligned_cols=117 Identities=18% Similarity=0.188 Sum_probs=71.5
Q ss_pred CEEEEEEecCCccccHHhHHHHhcc---CC-EEEEEEeCCCCCCh-HHHHHHHHHHhcC---------------------
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRA---VS-AIVYVVDAADYDNL-PVSRSELHDLLSK--------------------- 69 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~---~~-~~i~v~d~~~~~~~-~~~~~~~~~~~~~--------------------- 69 (137)
-.++.+|=.-|......+....+.. ++ .+|++.|+++++.. +.+.+|..-+.+.
T Consensus 99 ~tr~~VWiLDGd~~h~~LLk~al~ats~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~ 178 (473)
T KOG3905|consen 99 LTRCNVWILDGDLYHKGLLKFALPATSLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKD 178 (473)
T ss_pred hhhcceEEecCchhhhhHHhhcccccCccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 4789999998887777776665543 23 67788899998542 3333443311100
Q ss_pred ----------------CC-----------------------CCCCcEEEEeeCCCCCCCC----C-----HHHHHHHhCC
Q 032598 70 ----------------PS-----------------------LNGIPLLVLGNKIDKPEAL----S-----KEDLMEQMGL 101 (137)
Q Consensus 70 ----------------~~-----------------------~~~~p~ivv~nK~D~~~~~----~-----~~~~~~~~~~ 101 (137)
.+ .-++|+++|++|||..... . ...+...++.
T Consensus 179 wQeYvep~e~~pgsp~~r~t~~~~~~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRk 258 (473)
T KOG3905|consen 179 WQEYVEPGEDQPGSPQRRTTVVGSSADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRK 258 (473)
T ss_pred HHHhcCccccCCCCcccccccccCccccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHH
Confidence 00 0168999999999983221 1 1122222221
Q ss_pred CCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 102 KSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 102 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
.+-.-+...+.+|++..-|++-+.+.|++..
T Consensus 259 -FCLr~GaaLiyTSvKE~KNidllyKYivhr~ 289 (473)
T KOG3905|consen 259 -FCLRYGAALIYTSVKETKNIDLLYKYIVHRS 289 (473)
T ss_pred -HHHHcCceeEEeecccccchHHHHHHHHHHh
Confidence 0001123489999999999999999988754
No 355
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.014 Score=44.53 Aligned_cols=68 Identities=24% Similarity=0.328 Sum_probs=46.2
Q ss_pred EEEEEecCCcc---ccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC
Q 032598 18 TIKLWDLGGQP---RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL 90 (137)
Q Consensus 18 ~~~~~Dt~g~~---~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 90 (137)
.+.++|.||.. ...+....++..+|.+|+|..+.+.-+..+.. .+..... ..+.+.++.||+|.....
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~-Ff~~vs~----~KpniFIlnnkwDasase 277 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQ-FFHKVSE----EKPNIFILNNKWDASASE 277 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHH-HHHHhhc----cCCcEEEEechhhhhccc
Confidence 57889999964 55678888899999999999987754433322 2222211 245567778888986553
No 356
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.28 E-value=0.095 Score=36.05 Aligned_cols=95 Identities=15% Similarity=0.104 Sum_probs=55.9
Q ss_pred CCEEEEEEecCCccccHHhHH----H---Hhc-----cCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEee
Q 032598 15 GNVTIKLWDLGGQPRFRSMWE----R---YCR-----AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGN 82 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~----~---~~~-----~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 82 (137)
+++.+.++||||......... . ... ..+..++|+|++.. .+... ....+.+.. -+.-++.|
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~-~~~~f~~~~----~~~g~IlT 225 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALE-QAKVFNEAV----GLTGIILT 225 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHH-HHHHHHhhC----CCCEEEEE
Confidence 467899999999865443221 1 111 38999999999743 33322 223333221 13578899
Q ss_pred CCCCCCCCC-HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHH
Q 032598 83 KIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 126 (137)
Q Consensus 83 K~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 126 (137)
|.|.....- .-.+...++. ++..++ +|++++++-
T Consensus 226 KlDe~~~~G~~l~~~~~~~~--------Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 226 KLDGTAKGGIILSIAYELKL--------PIKFIG--VGEKIDDLA 260 (272)
T ss_pred ccCCCCCccHHHHHHHHHCc--------CEEEEe--CCCChHhCc
Confidence 999865432 2334444443 366665 788887664
No 357
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=96.21 E-value=0.038 Score=39.67 Aligned_cols=109 Identities=15% Similarity=0.209 Sum_probs=52.0
Q ss_pred EEEEEEecCCccccHHhHHHH-----hccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC--C--
Q 032598 17 VTIKLWDLGGQPRFRSMWERY-----CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK--P-- 87 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~~~~~~~-----~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~--~-- 87 (137)
-++.+||.||.....-....| +...|.+|++.+- .+...+-++-.-.+. .++|+.+|-+|+|. .
T Consensus 86 pnv~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s~----rf~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~ 158 (376)
T PF05049_consen 86 PNVTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISSE----RFTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNE 158 (376)
T ss_dssp TTEEEEEE--GGGSS--HHHHHHHTTGGG-SEEEEEESS----S--HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHH
T ss_pred CCCeEEeCCCCCCCCCCHHHHHHHccccccCEEEEEeCC----CCchhhHHHHHHHHH---cCCcEEEEEecccccHhhh
Confidence 469999999964333333444 4568887776642 344433333322222 67999999999995 1
Q ss_pred ---CCC--CH----HH----HHHHhCCCCCCCCceeEEEeecccC--CChHHHHHHHHHhhh
Q 032598 88 ---EAL--SK----ED----LMEQMGLKSITDREVCCYMISCKNS--TNIDTVIDWLVKHSK 134 (137)
Q Consensus 88 ---~~~--~~----~~----~~~~~~~~~~~~~~~~~~~~Sa~~~--~~v~~~~~~i~~~~~ 134 (137)
... .. ++ ..+.|... +....++|.+|..+- .....|.+.|.+.+-
T Consensus 159 ~~~~p~~f~~e~~L~~IR~~c~~~L~k~--gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp 218 (376)
T PF05049_consen 159 RRRKPRTFNEEKLLQEIRENCLENLQKA--GVSEPQVFLVSSFDLSKYDFPKLEETLEKDLP 218 (376)
T ss_dssp HCC-STT--HHTHHHHHHHHHHHHHHCT--T-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-
T ss_pred hccCCcccCHHHHHHHHHHHHHHHHHHc--CCCcCceEEEeCCCcccCChHHHHHHHHHHhH
Confidence 111 11 11 22333221 223456888888664 456777777776554
No 358
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.04 E-value=0.11 Score=36.65 Aligned_cols=95 Identities=13% Similarity=0.113 Sum_probs=54.3
Q ss_pred CCEEEEEEecCCccccHH----hHHHHh--------ccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEee
Q 032598 15 GNVTIKLWDLGGQPRFRS----MWERYC--------RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGN 82 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~----~~~~~~--------~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 82 (137)
.++.+.++||||...... ...... ...+..++|+|++.. .+.+.. ...+.+. --+.-++.|
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~-a~~f~~~----~~~~giIlT 267 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQ-AKAFHEA----VGLTGIILT 267 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHH-HHHHHhh----CCCCEEEEE
Confidence 567899999999854322 111221 246789999999853 222222 2222211 123478899
Q ss_pred CCCCCCCC-CHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHH
Q 032598 83 KIDKPEAL-SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 126 (137)
Q Consensus 83 K~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 126 (137)
|.|..... ..-.+...++. ++..++ +|++++++-
T Consensus 268 KlD~t~~~G~~l~~~~~~~~--------Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 268 KLDGTAKGGVVFAIADELGI--------PIKFIG--VGEGIDDLQ 302 (318)
T ss_pred CCCCCCCccHHHHHHHHHCC--------CEEEEe--CCCChhhCc
Confidence 99964332 22344444443 366666 788886653
No 359
>PRK14974 cell division protein FtsY; Provisional
Probab=95.87 E-value=0.15 Score=36.17 Aligned_cols=96 Identities=14% Similarity=0.161 Sum_probs=54.5
Q ss_pred CCEEEEEEecCCccccHH-hH---HHHh--ccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRS-MW---ERYC--RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~-~~---~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 88 (137)
.+..+.++||+|...... ++ .... ...+.+++|+|++.....- .....+.+. .+ .--++.||.|...
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~---~~a~~f~~~---~~-~~giIlTKlD~~~ 293 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAV---EQAREFNEA---VG-IDGVILTKVDADA 293 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHH---HHHHHHHhc---CC-CCEEEEeeecCCC
Confidence 356799999999865322 22 2222 2578999999987643211 222222221 11 2467899999865
Q ss_pred CCC-HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHH
Q 032598 89 ALS-KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVID 127 (137)
Q Consensus 89 ~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 127 (137)
..- .-.+....+. ++..++ +|++++++..
T Consensus 294 ~~G~~ls~~~~~~~--------Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 294 KGGAALSIAYVIGK--------PILFLG--VGQGYDDLIP 323 (336)
T ss_pred CccHHHHHHHHHCc--------CEEEEe--CCCChhhccc
Confidence 432 2233333333 366665 7999877653
No 360
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=95.81 E-value=0.012 Score=40.36 Aligned_cols=111 Identities=14% Similarity=0.075 Sum_probs=63.0
Q ss_pred CEEEEEEecCCc----------cccHHhHHHHhccCC---EEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEee
Q 032598 16 NVTIKLWDLGGQ----------PRFRSMWERYCRAVS---AIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGN 82 (137)
Q Consensus 16 ~~~~~~~Dt~g~----------~~~~~~~~~~~~~~~---~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 82 (137)
+-.+.+.|.||- .++......|+...+ .+.+.+|++.+-...+ ....+++.. .+.|+.+|.|
T Consensus 182 ~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D--~~~i~~~ge---~~VP~t~vfT 256 (320)
T KOG2486|consen 182 GKSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTD--NPEIAWLGE---NNVPMTSVFT 256 (320)
T ss_pred cceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCC--hHHHHHHhh---cCCCeEEeee
Confidence 457899999991 345566666665433 4445556665422222 111222222 5799999999
Q ss_pred CCCCCCCCC------HHHHHHHhCCCCC--CCCceeEEEeecccCCChHHHHHHHHH
Q 032598 83 KIDKPEALS------KEDLMEQMGLKSI--TDREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 83 K~D~~~~~~------~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
|||...... ...+...+..... -....+++.+|+.++.|++.+.-.|..
T Consensus 257 K~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 257 KCDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred hhhhhhhccccccCccccceeehhhccccceeccCCceeeecccccCceeeeeehhh
Confidence 999764422 1122221211110 011334667999999999988776654
No 361
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=95.78 E-value=0.054 Score=44.52 Aligned_cols=70 Identities=20% Similarity=0.249 Sum_probs=46.0
Q ss_pred EEEEEecCCcc--------ccHHhHHHHhc---------cCCEEEEEEeCCCCC--ChH-------HHHHHHHHHhcCCC
Q 032598 18 TIKLWDLGGQP--------RFRSMWERYCR---------AVSAIVYVVDAADYD--NLP-------VSRSELHDLLSKPS 71 (137)
Q Consensus 18 ~~~~~Dt~g~~--------~~~~~~~~~~~---------~~~~~i~v~d~~~~~--~~~-------~~~~~~~~~~~~~~ 71 (137)
+-.++||+|.. .....|..+++ -.+|+|+++|+.+.- +.+ .++..++++....
T Consensus 162 ~avliDtaG~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~l- 240 (1169)
T TIGR03348 162 EAVLIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQL- 240 (1169)
T ss_pred CEEEEcCCCccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHh-
Confidence 45689999942 23456666643 389999999988642 222 2333444444332
Q ss_pred CCCCcEEEEeeCCCCCC
Q 032598 72 LNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 72 ~~~~p~ivv~nK~D~~~ 88 (137)
....|+.++.+|+|+..
T Consensus 241 g~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 241 GARFPVYLVLTKADLLA 257 (1169)
T ss_pred CCCCCEEEEEecchhhc
Confidence 35799999999999874
No 362
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.49 E-value=0.04 Score=36.99 Aligned_cols=64 Identities=22% Similarity=0.329 Sum_probs=41.9
Q ss_pred CEEEEEEec-CCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCC-CcEEEEeeCCCCC
Q 032598 16 NVTIKLWDL-GGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNG-IPLLVLGNKIDKP 87 (137)
Q Consensus 16 ~~~~~~~Dt-~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~p~ivv~nK~D~~ 87 (137)
...+.+.|| +|.+.+. +.-.+++|.++.|+|++- +++....+. ..+... .+ .++.+|+||.|-.
T Consensus 133 ~~e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~-~sl~taeri-~~L~~e---lg~k~i~~V~NKv~e~ 198 (255)
T COG3640 133 RYEVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSY-KSLRTAERI-KELAEE---LGIKRIFVVLNKVDEE 198 (255)
T ss_pred cCcEEEEecccchhhhc---cccccCCCEEEEEeCCcH-HHHHHHHHH-HHHHHH---hCCceEEEEEeeccch
Confidence 467788898 6765553 334678999999999985 344333222 222221 23 6799999999965
No 363
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=95.13 E-value=0.076 Score=33.38 Aligned_cols=64 Identities=13% Similarity=0.130 Sum_probs=38.4
Q ss_pred CEEEEEEecCCccccHHhHHHH--------hccCCEEEEEEeCCCCCChH-HHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 032598 16 NVTIKLWDLGGQPRFRSMWERY--------CRAVSAIVYVVDAADYDNLP-VSRSELHDLLSKPSLNGIPLLVLGNKIDK 86 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 86 (137)
+....++||+|...-......+ .-..+++++++|+....... ....+..++ ..++ +++.||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi----~~ad---~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQI----AFAD---RILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHH----HHCC---EEEEecccC
Confidence 5778999999986444444332 23488999999987532211 111122222 1233 778999995
No 364
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=94.99 E-value=0.17 Score=31.03 Aligned_cols=66 Identities=14% Similarity=0.189 Sum_probs=43.7
Q ss_pred EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 032598 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 87 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 87 (137)
+.+.++|+|+... ......+..+|.++++.+++. .++......++.+... ....++.++.|+.+..
T Consensus 45 yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~~-~s~~~~~~~l~~l~~~--~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 45 YDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPEP-TSITDAYALIKKLAKQ--LRVLNFRVVVNRAESP 110 (139)
T ss_pred CCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCCh-hHHHHHHHHHHHHHHh--cCCCCEEEEEeCCCCH
Confidence 6789999987533 333467889999999998864 3444444444444332 1345678999999743
No 365
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=94.92 E-value=0.12 Score=35.54 Aligned_cols=34 Identities=29% Similarity=0.399 Sum_probs=24.3
Q ss_pred EEEEEecCCcccc----HHhHHHH---hccCCEEEEEEeCC
Q 032598 18 TIKLWDLGGQPRF----RSMWERY---CRAVSAIVYVVDAA 51 (137)
Q Consensus 18 ~~~~~Dt~g~~~~----~~~~~~~---~~~~~~~i~v~d~~ 51 (137)
+++++|+||..+. ..+...+ ++.+|++++|+|+.
T Consensus 63 ~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 63 TIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred EEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 5999999996432 2222333 57899999999874
No 366
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=94.73 E-value=0.65 Score=36.19 Aligned_cols=73 Identities=14% Similarity=0.108 Sum_probs=43.8
Q ss_pred eCCEEEEEEecCCccccH----------HhHHHHhc--cCCEEEEEEeCCCCCCh-H--HHHHHHHHHhcCCCCCCCcEE
Q 032598 14 KGNVTIKLWDLGGQPRFR----------SMWERYCR--AVSAIVYVVDAADYDNL-P--VSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 14 ~~~~~~~~~Dt~g~~~~~----------~~~~~~~~--~~~~~i~v~d~~~~~~~-~--~~~~~~~~~~~~~~~~~~p~i 78 (137)
.++..+.++||||..... .....+++ ..|++++|..++..... + ...+.+..++....+ .-+|
T Consensus 163 idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iw--k~tI 240 (763)
T TIGR00993 163 VQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIW--FNAI 240 (763)
T ss_pred ECCceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhH--cCEE
Confidence 457889999999975421 11222333 48999999877643221 2 123344444443222 3389
Q ss_pred EEeeCCCCCC
Q 032598 79 VLGNKIDKPE 88 (137)
Q Consensus 79 vv~nK~D~~~ 88 (137)
|+.++.|...
T Consensus 241 VVFThgD~lp 250 (763)
T TIGR00993 241 VTLTHAASAP 250 (763)
T ss_pred EEEeCCccCC
Confidence 9999999875
No 367
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=94.59 E-value=0.12 Score=36.14 Aligned_cols=72 Identities=17% Similarity=0.154 Sum_probs=46.6
Q ss_pred ecCCcc-ccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHHhCC
Q 032598 23 DLGGQP-RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGL 101 (137)
Q Consensus 23 Dt~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~ 101 (137)
+.||+. ..-..+...++..|.+|=|=|+--+-|-.. ..++.++ +.+|-|+|.||+|+.+......+.+.++.
T Consensus 28 wfpgHmakalr~i~~~l~~~D~iiEvrDaRiPLssrn--~~~~~~~-----~~k~riiVlNK~DLad~~~~k~~iq~~~~ 100 (335)
T KOG2485|consen 28 WFPGHMAKALRAIQNRLPLVDCIIEVRDARIPLSSRN--ELFQDFL-----PPKPRIIVLNKMDLADPKEQKKIIQYLEW 100 (335)
T ss_pred cCchHHHHHHHHHHhhcccccEEEEeeccccCCcccc--HHHHHhc-----CCCceEEEEecccccCchhhhHHHHHHHh
Confidence 346653 222345556788999999998876533221 2333332 36889999999999986666666666653
No 368
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.18 E-value=0.29 Score=35.93 Aligned_cols=67 Identities=16% Similarity=0.168 Sum_probs=40.5
Q ss_pred CCEEEEEEecCCccccHH-hHHHH-----hccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRS-MWERY-----CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~-~~~~~-----~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 88 (137)
+++.+.++||+|...... ++... ....+-+++|+|++-.+.-... ...+.+. --+.-++.||.|...
T Consensus 181 ~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~---a~~F~~~----~~~~g~IlTKlD~~a 253 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQ---AKAFKDS----VDVGSVIITKLDGHA 253 (429)
T ss_pred CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHH---HHHHHhc----cCCcEEEEECccCCC
Confidence 367899999999865542 22222 1246789999998764332222 2223221 134578899999754
No 369
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=94.18 E-value=0.21 Score=31.05 Aligned_cols=59 Identities=15% Similarity=0.201 Sum_probs=37.5
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 85 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 85 (137)
.++.+.++||+|..... ..++..||-+++|..+.-.+.+.-+. ..+.. .-=+++.||.|
T Consensus 90 ~~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~D~y~~~k---~~~~~------~~~~~~~~k~~ 148 (148)
T cd03114 90 AGFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGAGDDIQAIK---AGIME------IADIVVVNKAD 148 (148)
T ss_pred cCCCEEEEECCccChhh---hhHHHhCCEEEEEECCCchhHHHHhh---hhHhh------hcCEEEEeCCC
Confidence 36889999999965332 34889999999999887333322111 11111 11278899987
No 370
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=94.14 E-value=0.55 Score=33.26 Aligned_cols=92 Identities=16% Similarity=0.104 Sum_probs=53.0
Q ss_pred CEEEEEEecCCccccHHhHHHHhc--------cCCEEEEEEeCCCCCChHH-HHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCR--------AVSAIVYVVDAADYDNLPV-SRSELHDLLSKPSLNGIPLLVLGNKIDK 86 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~--------~~~~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 86 (137)
.....+++|.|.-.-.+....+.. ..|+++.|+|+........ ....+.. +....+ ++++||.|+
T Consensus 84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~---Qia~AD---~ivlNK~Dl 157 (323)
T COG0523 84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAED---QLAFAD---VIVLNKTDL 157 (323)
T ss_pred CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHH---HHHhCc---EEEEecccC
Confidence 366778889887555444444432 3688999999987533222 2222222 222244 889999999
Q ss_pred CCCCCHHHHHHHhCCCCCCCCceeEEEeec
Q 032598 87 PEALSKEDLMEQMGLKSITDREVCCYMISC 116 (137)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 116 (137)
.+......+...+... ++..+++.+|.
T Consensus 158 v~~~~l~~l~~~l~~l---np~A~i~~~~~ 184 (323)
T COG0523 158 VDAEELEALEARLRKL---NPRARIIETSY 184 (323)
T ss_pred CCHHHHHHHHHHHHHh---CCCCeEEEccc
Confidence 8765444433333221 23445676666
No 371
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=93.83 E-value=0.65 Score=33.44 Aligned_cols=34 Identities=32% Similarity=0.420 Sum_probs=24.5
Q ss_pred EEEEEecCCcccc----HHhHHHH---hccCCEEEEEEeCC
Q 032598 18 TIKLWDLGGQPRF----RSMWERY---CRAVSAIVYVVDAA 51 (137)
Q Consensus 18 ~~~~~Dt~g~~~~----~~~~~~~---~~~~~~~i~v~d~~ 51 (137)
++.+.|+||.... ..+...+ ++.+|++++|+|+.
T Consensus 67 ~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 67 TIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred eEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 5999999996432 1222233 67899999999985
No 372
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=93.82 E-value=0.98 Score=33.05 Aligned_cols=59 Identities=19% Similarity=0.207 Sum_probs=37.8
Q ss_pred hccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHHh
Q 032598 38 CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQM 99 (137)
Q Consensus 38 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~ 99 (137)
+-.+|++|-|+|+.|+-.-. . ..++..++. ..+++-+++|+||+|+...-.-......|
T Consensus 211 iDSSDVvvqVlDARDPmGTr-c-~~ve~ylkk-e~phKHli~vLNKvDLVPtwvt~~Wv~~l 269 (572)
T KOG2423|consen 211 IDSSDVVVQVLDARDPMGTR-C-KHVEEYLKK-EKPHKHLIYVLNKVDLVPTWVTAKWVRHL 269 (572)
T ss_pred hcccceeEEeeeccCCcccc-c-HHHHHHHhh-cCCcceeEEEeeccccccHHHHHHHHHHH
Confidence 45689999999999873211 1 233444433 24778899999999997653333333433
No 373
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=93.79 E-value=2.4 Score=32.54 Aligned_cols=97 Identities=21% Similarity=0.261 Sum_probs=56.5
Q ss_pred EEEEEEecCCc-------------cccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeC
Q 032598 17 VTIKLWDLGGQ-------------PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNK 83 (137)
Q Consensus 17 ~~~~~~Dt~g~-------------~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 83 (137)
-+..+.|.||. +..-.+-.+|+.+.+++|+++.-.+.+ .-+.....+.......+...|+|.+|
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVD---AERSnVTDLVsq~DP~GrRTIfVLTK 488 (980)
T KOG0447|consen 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVD---AERSIVTDLVSQMDPHGRRTIFVLTK 488 (980)
T ss_pred ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcc---hhhhhHHHHHHhcCCCCCeeEEEEee
Confidence 35678999995 233457778899999999988433221 11122223333334456778999999
Q ss_pred CCCCCC--CCHHHHHHHhCCCCCCCCceeEEEeec
Q 032598 84 IDKPEA--LSKEDLMEQMGLKSITDREVCCYMISC 116 (137)
Q Consensus 84 ~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa 116 (137)
.|+.+. .....+...+....+..+-.-|+.+-.
T Consensus 489 VDlAEknlA~PdRI~kIleGKLFPMKALGYfaVVT 523 (980)
T KOG0447|consen 489 VDLAEKNVASPSRIQQIIEGKLFPMKALGYFAVVT 523 (980)
T ss_pred cchhhhccCCHHHHHHHHhcCccchhhcceeEEEe
Confidence 999865 234455555544333333333544433
No 374
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=93.76 E-value=1 Score=31.09 Aligned_cols=76 Identities=16% Similarity=0.182 Sum_probs=49.0
Q ss_pred EEEEEEecC-CccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHH
Q 032598 17 VTIKLWDLG-GQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDL 95 (137)
Q Consensus 17 ~~~~~~Dt~-g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 95 (137)
..+.++|+| |. ..-.-..+..+|.+++|-.++- ..+.++.+.++.. ...++|..+|.||.+.... ...+.
T Consensus 164 ~~~~IIDsaaG~---gCpVi~sl~~aD~ai~VTEPTp-~glhD~kr~~el~----~~f~ip~~iViNr~~~g~s-~ie~~ 234 (284)
T COG1149 164 ADLLIIDSAAGT---GCPVIASLKGADLAILVTEPTP-FGLHDLKRALELV----EHFGIPTGIVINRYNLGDS-EIEEY 234 (284)
T ss_pred cceeEEecCCCC---CChHHHhhccCCEEEEEecCCc-cchhHHHHHHHHH----HHhCCceEEEEecCCCCch-HHHHH
Confidence 467778873 32 1112345788999999998875 3455555544433 2368999999999966554 45555
Q ss_pred HHHhCC
Q 032598 96 MEQMGL 101 (137)
Q Consensus 96 ~~~~~~ 101 (137)
.+..+.
T Consensus 235 ~~e~gi 240 (284)
T COG1149 235 CEEEGI 240 (284)
T ss_pred HHHcCC
Confidence 555544
No 375
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=93.76 E-value=0.61 Score=27.15 Aligned_cols=62 Identities=11% Similarity=-0.004 Sum_probs=40.1
Q ss_pred EEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCC-CCcEEEEeeC
Q 032598 18 TIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLN-GIPLLVLGNK 83 (137)
Q Consensus 18 ~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK 83 (137)
.+.+.|||+..... ....+..+|.++++.+++. .+........+.+.+. ... ...+.+++|+
T Consensus 44 D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~~~-~s~~~~~~~~~~l~~~-~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDEV--SLAALDQADRVFLVTQQDL-PSIRNAKRLLELLRVL-DYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCHH--HHHHHHHcCeEEEEecCCh-HHHHHHHHHHHHHHHc-CCCCcCceEEEecC
Confidence 78999998865432 3446788999999997764 3555555555555433 222 3456677775
No 376
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.63 E-value=0.83 Score=33.66 Aligned_cols=80 Identities=16% Similarity=0.153 Sum_probs=44.4
Q ss_pred CCEEEEEEecCCccccHH-hHHHH-----hccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRS-MWERY-----CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~-~~~~~-----~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 88 (137)
+++.+.++||||...... ..... .-..+.+++|+|+... ++.......+.... ++ .=++.||.|-..
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v---~i-~giIlTKlD~~~ 253 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL---GL-TGVVLTKLDGDA 253 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC---CC-CEEEEeCccCcc
Confidence 456799999999754322 11111 2347899999998753 23333333343221 12 356699999543
Q ss_pred C-CCHHHHHHHhCC
Q 032598 89 A-LSKEDLMEQMGL 101 (137)
Q Consensus 89 ~-~~~~~~~~~~~~ 101 (137)
. -....+...++.
T Consensus 254 ~~G~~lsi~~~~~~ 267 (428)
T TIGR00959 254 RGGAALSVRSVTGK 267 (428)
T ss_pred cccHHHHHHHHHCc
Confidence 2 223444555543
No 377
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=93.50 E-value=0.81 Score=32.88 Aligned_cols=83 Identities=18% Similarity=0.215 Sum_probs=61.2
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHH
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDL 95 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 95 (137)
.+.+.++|.| ..+......++.++|-+++|++.+-. ++....+.+..+.+. +....+..+++||.+.....+.+++
T Consensus 217 ~~~~vV~Dlp--~~~~~~t~~vL~~Sd~iviv~e~sl~-slR~ak~lld~l~~~-r~~~~~p~lv~n~~~~~~~~~~~dl 292 (366)
T COG4963 217 SFDFVVVDLP--NIWTDWTRQVLSGSDEIVIVAEPSLA-SLRNAKELLDELKRL-RPNDPKPILVLNRVGVPKRPEPSDL 292 (366)
T ss_pred cCCeEEEcCC--CccchHHHHHHhcCCeEEEEecccHH-HHHHHHHHHHHHHHh-CCCCCCceEEeeecCCCCCCCHHHH
Confidence 5788999999 55666778889999999999998753 566666666666543 3355666888999987766666777
Q ss_pred HHHhCCC
Q 032598 96 MEQMGLK 102 (137)
Q Consensus 96 ~~~~~~~ 102 (137)
...++..
T Consensus 293 ~~~~~i~ 299 (366)
T COG4963 293 EEILGIE 299 (366)
T ss_pred HHHhCCc
Confidence 7777654
No 378
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.26 E-value=0.87 Score=28.80 Aligned_cols=68 Identities=16% Similarity=0.166 Sum_probs=40.1
Q ss_pred CCEEEEEEecCCccccHH----hHHHHh--ccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRS----MWERYC--RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~----~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 88 (137)
.+..+.+.||+|...... ....+. ...+++++|+++..... .......+.+. .+ ..-++.||.|...
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~---~~-~~~viltk~D~~~ 153 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEA---LG-ITGVILTKLDGDA 153 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhh---CC-CCEEEEECCcCCC
Confidence 356788999999753322 112222 34899999999864322 22333344322 12 2567789999764
Q ss_pred C
Q 032598 89 A 89 (137)
Q Consensus 89 ~ 89 (137)
.
T Consensus 154 ~ 154 (173)
T cd03115 154 R 154 (173)
T ss_pred C
Confidence 3
No 379
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=93.14 E-value=0.52 Score=32.35 Aligned_cols=48 Identities=23% Similarity=0.274 Sum_probs=30.4
Q ss_pred CCEEEEEEeCCCCCC-------hHH----HHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 032598 41 VSAIVYVVDAADYDN-------LPV----SRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 89 (137)
Q Consensus 41 ~~~~i~v~d~~~~~~-------~~~----~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 89 (137)
.+|+|+++|+.+.-. +.. ++..++++... ....+||.++++|+|+...
T Consensus 26 lnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~-lg~~~PVYvv~Tk~D~l~G 84 (266)
T PF14331_consen 26 LNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRT-LGVRLPVYVVFTKCDLLPG 84 (266)
T ss_pred CCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHH-hCCCCCeEeeeECCCcccC
Confidence 699999999875211 111 22233333332 2367999999999998753
No 380
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=92.36 E-value=1.8 Score=27.23 Aligned_cols=66 Identities=11% Similarity=-0.081 Sum_probs=43.5
Q ss_pred EEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 032598 18 TIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 89 (137)
Q Consensus 18 ~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 89 (137)
.+.++|||+..... ....+..+|.++++++++. .++......++.+... ......++.|+.+....
T Consensus 64 d~viiD~p~~~~~~--~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~---~~~~~~iv~N~~~~~~~ 129 (179)
T cd02036 64 DYILIDSPAGIERG--FITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL---GIKVVGVIVNRVRPDMV 129 (179)
T ss_pred CEEEEECCCCCcHH--HHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc---CCceEEEEEeCCccccc
Confidence 68999998764432 3345688999999998875 3555555555544331 22346788999987543
No 381
>PRK10867 signal recognition particle protein; Provisional
Probab=92.19 E-value=1.3 Score=32.71 Aligned_cols=80 Identities=15% Similarity=0.139 Sum_probs=43.4
Q ss_pred CCEEEEEEecCCccccHH-hHHH---H--hccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRS-MWER---Y--CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~-~~~~---~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 88 (137)
.++.+.++||+|...... +... . .-..+.+++|+|+... ++.......+.... ++ .-++.||.|-..
T Consensus 182 ~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~---~i-~giIlTKlD~~~ 254 (433)
T PRK10867 182 NGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL---GL-TGVILTKLDGDA 254 (433)
T ss_pred cCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC---CC-CEEEEeCccCcc
Confidence 357899999999754322 2211 1 1256788999998643 23333333333221 12 356779999643
Q ss_pred C-CCHHHHHHHhCC
Q 032598 89 A-LSKEDLMEQMGL 101 (137)
Q Consensus 89 ~-~~~~~~~~~~~~ 101 (137)
. -..-.+...++.
T Consensus 255 rgG~alsi~~~~~~ 268 (433)
T PRK10867 255 RGGAALSIRAVTGK 268 (433)
T ss_pred cccHHHHHHHHHCc
Confidence 2 223344444443
No 382
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.96 E-value=1.1 Score=32.75 Aligned_cols=51 Identities=20% Similarity=0.282 Sum_probs=34.0
Q ss_pred eCCEEEEEEecCCccccH-HhHHHHh-----ccCCEEEEEEeCCCCCChHHHHHHHH
Q 032598 14 KGNVTIKLWDLGGQPRFR-SMWERYC-----RAVSAIVYVVDAADYDNLPVSRSELH 64 (137)
Q Consensus 14 ~~~~~~~~~Dt~g~~~~~-~~~~~~~-----~~~~~~i~v~d~~~~~~~~~~~~~~~ 64 (137)
.+++.+.+.||.|+..-. ++..... -.-|-+|+|+|++-.+.-+....-+.
T Consensus 181 ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk 237 (483)
T KOG0780|consen 181 KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFK 237 (483)
T ss_pred hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHH
Confidence 467999999999975433 3333332 24789999999987665554444443
No 383
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=91.40 E-value=0.95 Score=30.84 Aligned_cols=69 Identities=16% Similarity=0.158 Sum_probs=40.9
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE-EEEeeCCCC
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL-LVLGNKIDK 86 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~ 86 (137)
++.+.++||+|...... ....+..||.++++..++- .++......+..+.......++++ -++.|+.+.
T Consensus 115 ~yD~vIIDt~g~~~~~~-~~~al~~aD~vlip~~p~~-~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 115 EYDVILFDVLGDVVCGG-FAAPLNYADYALIVTDNDF-DSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred cCCEEEEeCCCCccccc-chhhhhhcCEEEEEecCCc-ccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 57889999987643221 1223677999999887753 445554444433322111245554 367899985
No 384
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=91.32 E-value=0.53 Score=28.19 Aligned_cols=59 Identities=25% Similarity=0.244 Sum_probs=39.2
Q ss_pred EEEEeeCCCCCCCC--------CHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEAL--------SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++++|.+--+-. ....+.+.+........++.++.+||..++.+.+.++.+.+.+.+
T Consensus 57 V~v~GC~~geCHy~~GN~ka~rR~~~lke~l~elgie~eRv~~~wiSa~E~ekf~e~~~efv~~i~~ 123 (132)
T COG1908 57 VLVAGCKIGECHYISGNYKAKRRMELLKELLKELGIEPERVRVLWISAAEGEKFAETINEFVERIKE 123 (132)
T ss_pred EEEecccccceeeeccchHHHHHHHHHHHHHHHhCCCcceEEEEEEehhhHHHHHHHHHHHHHHHHH
Confidence 56667777642211 112233333333344567889999999999999999999988864
No 385
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=91.20 E-value=2.9 Score=27.22 Aligned_cols=68 Identities=21% Similarity=0.090 Sum_probs=42.4
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDKPE 88 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~ 88 (137)
+.+.+.++|+|..... .......+.+|++++|.++.. .+...+....+.+.+ .+.+ .-+|.||.+...
T Consensus 126 ~~yD~ViiD~pp~~~~-~~~~~~~~~~D~vilV~~~~~-~~~~~~~~~~~~l~~----~~~~~~gvVlN~~~~~~ 194 (204)
T TIGR01007 126 KYFDYIIIDTPPIGTV-TDAAIIARACDASILVTDAGE-IKKRDVQKAKEQLEQ----TGSNFLGVVLNKVDISV 194 (204)
T ss_pred hcCCEEEEeCCCcccc-chHHHHHHhCCeEEEEEECCC-CCHHHHHHHHHHHHh----CCCCEEEEEEeCccccc
Confidence 3577899999863221 112234567999999999865 345555555444432 2333 567899998653
No 386
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=91.05 E-value=1.4 Score=29.36 Aligned_cols=68 Identities=18% Similarity=0.076 Sum_probs=43.8
Q ss_pred EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 032598 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 88 (137)
..+.++|||+. ........+..+|.+++++.++. .++..+...+..+... .....+.-++.|+.|...
T Consensus 115 ~D~viiD~pp~--~~~~~~~~l~~ad~vii~~~~~~-~s~~~~~~~~~~l~~~-~~~~~~~~iv~n~~~~~~ 182 (246)
T TIGR03371 115 RDWVLIDVPRG--PSPITRQALAAADLVLVVVNADA-ACYATLHQQALALFAG-SGPRIGPHFLINQFDPAR 182 (246)
T ss_pred CCEEEEECCCC--chHHHHHHHHhCCeEEEEeCCCH-HHHHHHHHHHHHHhhc-ccccccceEEeeccCcch
Confidence 37999999884 33455567788999999998753 3444444333333331 113455778999998653
No 387
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=90.97 E-value=0.92 Score=30.93 Aligned_cols=70 Identities=13% Similarity=0.151 Sum_probs=42.5
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE-EEEeeCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL-LVLGNKIDK 86 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~ 86 (137)
+++.+.++||+|...... ....+..||.+++++.++ ..++..+......+.......++++ -++.|+.+.
T Consensus 116 ~~yD~viIDt~g~~~~~~-~~~~l~~AD~viip~~~~-~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~ 186 (270)
T PRK13185 116 DDYDVILFDVLGDVVCGG-FAAPLQYADYALIVTAND-FDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSAG 186 (270)
T ss_pred ccCCEEEEecCCCcccCc-ccchhhhCcEEEEEecCc-hhhHHHHHHHHHHHHhhhhccCCCceEEEEeccCh
Confidence 467899999987643222 223366799999988663 4556555555444432211245664 378899763
No 388
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=90.92 E-value=0.7 Score=32.02 Aligned_cols=46 Identities=15% Similarity=0.122 Sum_probs=28.0
Q ss_pred CCEEEEEEeCCCCCChHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH
Q 032598 41 VSAIVYVVDAADYDNLPVSRS-ELHDLLSKPSLNGIPLLVLGNKIDKPEALSK 92 (137)
Q Consensus 41 ~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 92 (137)
.|+++++++++.. .+..++. ....+. ...++|-|+.|+|.......
T Consensus 114 VH~cLYfI~pt~~-~L~~~Di~~mk~Ls-----~~vNvIPvIaKaD~lt~~el 160 (281)
T PF00735_consen 114 VHACLYFIPPTGH-GLKPLDIEFMKRLS-----KRVNVIPVIAKADTLTPEEL 160 (281)
T ss_dssp EEEEEEEE-TTSS-SS-HHHHHHHHHHT-----TTSEEEEEESTGGGS-HHHH
T ss_pred cceEEEEEcCCCc-cchHHHHHHHHHhc-----ccccEEeEEecccccCHHHH
Confidence 6899999998753 3333322 223332 45789999999998764443
No 389
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=90.81 E-value=2.8 Score=26.41 Aligned_cols=65 Identities=15% Similarity=0.111 Sum_probs=43.1
Q ss_pred CCEEEEEEecCCccccHHhHHHHh--ccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE-EEEeeCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYC--RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL-LVLGNKIDK 86 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~ 86 (137)
+++.+.+.|||+...-.. .... ..+|.+++|..+.. .+..........+.+. +.++ -++.|+.+.
T Consensus 66 ~~yD~VIiD~pp~~~~~~--~~~~~~~~ad~viiV~~p~~-~s~~~~~~~~~~l~~~----~~~~~gvv~N~~~~ 133 (169)
T cd02037 66 GELDYLVIDMPPGTGDEH--LTLAQSLPIDGAVIVTTPQE-VALDDVRKAIDMFKKV----NIPILGVVENMSYF 133 (169)
T ss_pred CCCCEEEEeCCCCCcHHH--HHHHhccCCCeEEEEECCch-hhHHHHHHHHHHHHhc----CCCeEEEEEcCCcc
Confidence 568899999988643222 2223 57899999997764 4566666666666543 3333 577999875
No 390
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=90.68 E-value=3.3 Score=29.88 Aligned_cols=46 Identities=20% Similarity=0.200 Sum_probs=28.9
Q ss_pred CCEEEEEEeCCCCCChHHHHHH-HHHHhcCCCCCCCcEEEEeeCCCCCCCCCH
Q 032598 41 VSAIVYVVDAADYDNLPVSRSE-LHDLLSKPSLNGIPLLVLGNKIDKPEALSK 92 (137)
Q Consensus 41 ~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 92 (137)
.+++++.+.++- +++..++-. ...+. ..+.+|-|+.|+|.......
T Consensus 134 VH~cLYFI~Ptg-h~l~~~DIe~Mk~ls-----~~vNlIPVI~KaD~lT~~El 180 (373)
T COG5019 134 VHACLYFIRPTG-HGLKPLDIEAMKRLS-----KRVNLIPVIAKADTLTDDEL 180 (373)
T ss_pred eEEEEEEecCCC-CCCCHHHHHHHHHHh-----cccCeeeeeeccccCCHHHH
Confidence 689999998764 334333322 22222 34678889999998765443
No 391
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=90.59 E-value=0.55 Score=34.99 Aligned_cols=118 Identities=19% Similarity=0.238 Sum_probs=70.9
Q ss_pred CEEEEEEecCCccccHHhHHHHhcc----CCEEEEEEeCCCCCChH-HHHHHHHHHh-----------------------
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRA----VSAIVYVVDAADYDNLP-VSRSELHDLL----------------------- 67 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~----~~~~i~v~d~~~~~~~~-~~~~~~~~~~----------------------- 67 (137)
..++.+|-..|...+..+..-.+.. --.+++|+|.+.++.+- .+..|+..+.
T Consensus 72 ~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~ 151 (472)
T PF05783_consen 72 LARLNVWELDGDPSHSDLLKFALTPENLPNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQ 151 (472)
T ss_pred CceeeEEEcCCCcchHhHhcccCCcccccceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 3679999998877777776655543 24788899999987532 2222222100
Q ss_pred --cC------C-----------------C-------------CCCCcEEEEeeCCCCCCC---------CCHHHHHHHhC
Q 032598 68 --SK------P-----------------S-------------LNGIPLLVLGNKIDKPEA---------LSKEDLMEQMG 100 (137)
Q Consensus 68 --~~------~-----------------~-------------~~~~p~ivv~nK~D~~~~---------~~~~~~~~~~~ 100 (137)
.+ . . .-++|++||++|+|.... ...+-+...++
T Consensus 152 ~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR 231 (472)
T PF05783_consen 152 WQEYVEPGDSSDSGSPNRRSPSSSSSDDESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLR 231 (472)
T ss_pred HHHhhhccccccccCcccccccccccccccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHH
Confidence 00 0 0 014899999999996431 11122222222
Q ss_pred CCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 101 LKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 101 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
.... .-+...+.||++...|++.+.+.|.+.+.
T Consensus 232 ~~cL-~yGAsL~yts~~~~~n~~~L~~yi~h~l~ 264 (472)
T PF05783_consen 232 TFCL-KYGASLIYTSVKEEKNLDLLYKYILHRLY 264 (472)
T ss_pred HHHH-hcCCeEEEeeccccccHHHHHHHHHHHhc
Confidence 1100 12345788999999999999988887764
No 392
>PHA02518 ParA-like protein; Provisional
Probab=90.32 E-value=3.3 Score=26.84 Aligned_cols=69 Identities=12% Similarity=0.083 Sum_probs=41.7
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCC--CChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADY--DNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDKP 87 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~ 87 (137)
..+.+.++||||.. .......+..+|.++.+..++.. .+......++...... ..+.| ..++.|+.+..
T Consensus 75 ~~~d~viiD~p~~~--~~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~--~~~~~~~~iv~n~~~~~ 146 (211)
T PHA02518 75 SGYDYVVVDGAPQD--SELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEV--TDGLPKFAFIISRAIKN 146 (211)
T ss_pred ccCCEEEEeCCCCc--cHHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhh--CCCCceEEEEEeccCCc
Confidence 35789999999873 34456678899999999988742 2233333333332211 12344 35667776543
No 393
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=89.39 E-value=2.1 Score=31.61 Aligned_cols=66 Identities=15% Similarity=0.100 Sum_probs=41.4
Q ss_pred CCEEEEEEecCCccccHHhHHHH------hccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERY------CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 87 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~------~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 87 (137)
..+.+.++||+|+.......-.- .-+.|-+++|+|+.-.+.--...+-+++-+.. . =++++|.|-.
T Consensus 181 ~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~i---t----GvIlTKlDGd 252 (451)
T COG0541 181 EGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGI---T----GVILTKLDGD 252 (451)
T ss_pred cCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCC---c----eEEEEcccCC
Confidence 35689999999987665332222 23578999999998866554444444444332 1 2456677653
No 394
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=89.33 E-value=1.2 Score=29.31 Aligned_cols=72 Identities=11% Similarity=0.038 Sum_probs=41.1
Q ss_pred CCEEEEEEecCCccccHHhHH-HHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWE-RYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDKP 87 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~-~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~ 87 (137)
+++.+.++||+|......... ...+.||.+++++.++. .++.......+.+.......+.+ ..++.||.+..
T Consensus 115 ~~yD~ilID~~g~~~~~~~~~~l~~~~ad~vliv~~p~~-~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~ 188 (212)
T cd02117 115 DDLDVVLYDVLGDVVCGGFAMPIREGKADEIYIVTSGEF-MALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD 188 (212)
T ss_pred cCCCEEEEecCCCceecccccccccccCcEEEEEecccH-HHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc
Confidence 468899999987653222111 11247999999997754 34444443333333221112333 45899999864
No 395
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=89.32 E-value=1.4 Score=28.87 Aligned_cols=68 Identities=12% Similarity=0.059 Sum_probs=38.6
Q ss_pred CCEEEEEEecCCccccHH----hHHHHhc--cCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRS----MWERYCR--AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~----~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 88 (137)
++..+.++||+|...... .+..+++ ..+-+++|++++... +.+. ....+... .+ +-=++.+|.|-..
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~--~~~~-~~~~~~~~---~~-~~~lIlTKlDet~ 154 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ--EDLE-QALAFYEA---FG-IDGLILTKLDETA 154 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG--HHHH-HHHHHHHH---SS-TCEEEEESTTSSS
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh--HHHH-HHHHHhhc---cc-CceEEEEeecCCC
Confidence 457899999999765442 2222222 477899999998642 2222 22222221 11 2356699999754
Q ss_pred C
Q 032598 89 A 89 (137)
Q Consensus 89 ~ 89 (137)
.
T Consensus 155 ~ 155 (196)
T PF00448_consen 155 R 155 (196)
T ss_dssp T
T ss_pred C
Confidence 3
No 396
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=89.17 E-value=0.71 Score=30.83 Aligned_cols=80 Identities=19% Similarity=0.225 Sum_probs=42.7
Q ss_pred EEEEEecCCccc-cH--HhHHHH---hcc---CCEEEEEEeCCCCCChHHHHHHHHHHhcC---CCCCCCcEEEEeeCCC
Q 032598 18 TIKLWDLGGQPR-FR--SMWERY---CRA---VSAIVYVVDAADYDNLPVSRSELHDLLSK---PSLNGIPLLVLGNKID 85 (137)
Q Consensus 18 ~~~~~Dt~g~~~-~~--~~~~~~---~~~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~---~~~~~~p~ivv~nK~D 85 (137)
.+-+.|+|||-. |. +.++.. +++ --++++++|+.= +-+..+.+..++.. .-.-.+|.|-+.+|+|
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf---~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMD 175 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQF---LVDSTKFISGCLSALSAMISLEVPHINVLSKMD 175 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccch---hhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHH
Confidence 577899999843 21 222222 222 335566666532 11122222222211 1124688999999999
Q ss_pred CCCCCCHHHHHHHhC
Q 032598 86 KPEALSKEDLMEQMG 100 (137)
Q Consensus 86 ~~~~~~~~~~~~~~~ 100 (137)
+.+....+++.+.+.
T Consensus 176 Llk~~~k~~l~~Fl~ 190 (273)
T KOG1534|consen 176 LLKDKNKKELERFLN 190 (273)
T ss_pred HhhhhhHHHHHHhcC
Confidence 987765555555554
No 397
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=88.97 E-value=0.33 Score=33.35 Aligned_cols=51 Identities=20% Similarity=0.130 Sum_probs=37.5
Q ss_pred CCcEEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 74 GIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 74 ~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
.+|++.+.||+|....+..+ -.+ +..+.+++||-.+.|++++++.+-+.+.
T Consensus 231 yVp~iyvLNkIdsISiEELd---ii~-------~iphavpISA~~~wn~d~lL~~mweyL~ 281 (358)
T KOG1487|consen 231 YVPCIYVLNKIDSISIEELD---IIY-------TIPHAVPISAHTGWNFDKLLEKMWEYLK 281 (358)
T ss_pred eeeeeeeecccceeeeeccc---eee-------eccceeecccccccchHHHHHHHhhcch
Confidence 47999999999975432211 111 2335899999999999999999887664
No 398
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=88.69 E-value=4.1 Score=27.37 Aligned_cols=68 Identities=10% Similarity=0.090 Sum_probs=43.7
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcC--CCCCCCcEEEEeeCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSK--PSLNGIPLLVLGNKID 85 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~p~ivv~nK~D 85 (137)
+++.+.++||||... ......+..+|.++..+.++. .++......+..+... ....++|..++.|.++
T Consensus 82 ~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~-~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~ 151 (231)
T PRK13849 82 QGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTP-LDIDEALSTYRYVIELLLSENLAIPTAILRQRVP 151 (231)
T ss_pred CCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcH-HHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence 468999999999754 344556788999988887654 2343333333332221 1124678889999986
No 399
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=88.38 E-value=1 Score=32.13 Aligned_cols=37 Identities=19% Similarity=0.220 Sum_probs=26.8
Q ss_pred CEEEEEEecCCccccHHhHHHHh-------ccCCEEEEEEeCCC
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYC-------RAVSAIVYVVDAAD 52 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~-------~~~~~~i~v~d~~~ 52 (137)
+....+++|.|...-..+...+. -..++++.|+|+..
T Consensus 92 ~~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~ 135 (341)
T TIGR02475 92 RPDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPA 135 (341)
T ss_pred CCCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECch
Confidence 46778899999866655555442 14689999999975
No 400
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=88.32 E-value=3.8 Score=27.37 Aligned_cols=66 Identities=15% Similarity=0.040 Sum_probs=41.9
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDKP 87 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~ 87 (137)
+++.+.++|+|+.... .....+..+|.+++|++++- .++.......+... . .+.+ ..++.|+.+..
T Consensus 107 ~~yD~VIiD~p~~~~~--~~~~~l~~ad~vliv~~~~~-~s~~~~~~~~~~~~-~---~~~~~~~vv~N~~~~~ 173 (251)
T TIGR01969 107 DDTDFLLIDAPAGLER--DAVTALAAADELLLVVNPEI-SSITDALKTKIVAE-K---LGTAILGVVLNRVTRD 173 (251)
T ss_pred hhCCEEEEeCCCccCH--HHHHHHHhCCeEEEEECCCC-chHHHHHHHHHHHH-h---cCCceEEEEEECCCch
Confidence 3578999999876543 23345667999999998864 44554433332222 1 2334 46889999864
No 401
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=88.08 E-value=2.3 Score=30.05 Aligned_cols=66 Identities=12% Similarity=0.113 Sum_probs=40.0
Q ss_pred EEEEEEecCCccccHHhHHHHhc--------cCCEEEEEEeCCCCCChH-HHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 032598 17 VTIKLWDLGGQPRFRSMWERYCR--------AVSAIVYVVDAADYDNLP-VSRSELHDLLSKPSLNGIPLLVLGNKIDKP 87 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~~~~~~~~~--------~~~~~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 87 (137)
....+++|.|...-.++...++. ..++++.|+|+....... .......++ ...+ ++++||+|+.
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi----~~AD---~IvlnK~Dl~ 163 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQV----GYAD---RILLTKTDVA 163 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHH----HhCC---EEEEeccccC
Confidence 56788999998665555554422 258999999997642211 111111122 2234 8899999987
Q ss_pred CC
Q 032598 88 EA 89 (137)
Q Consensus 88 ~~ 89 (137)
..
T Consensus 164 ~~ 165 (318)
T PRK11537 164 GE 165 (318)
T ss_pred CH
Confidence 64
No 402
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=87.97 E-value=2.7 Score=31.12 Aligned_cols=65 Identities=12% Similarity=0.150 Sum_probs=37.8
Q ss_pred EEEEEEecCCccccHHhH----HHH--hccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 032598 17 VTIKLWDLGGQPRFRSMW----ERY--CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~~~~----~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 88 (137)
..+.++||+|........ ... ...++.+++|+|++... +.......+... -+ ..-++.||.|...
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~---l~-i~gvIlTKlD~~a 246 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEA---VG-IGGIIITKLDGTA 246 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhc---CC-CCEEEEecccCCC
Confidence 478999999986653221 111 33588999999987642 222222333211 11 2356789999653
No 403
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=87.05 E-value=3.4 Score=27.75 Aligned_cols=65 Identities=8% Similarity=0.000 Sum_probs=42.4
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 86 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 86 (137)
.+.+.++|+|+.... .....+..+|.+++++.++- .++......+..+... . ..+..++.|+.+.
T Consensus 111 ~~D~viiD~p~~~~~--~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~-~--~~~~~iviN~~~~ 175 (261)
T TIGR01968 111 EFDYVIIDCPAGIES--GFRNAVAPADEAIVVTTPEV-SAVRDADRVIGLLEAK-G--IEKIHLIVNRLRP 175 (261)
T ss_pred hCCEEEEeCCCCcCH--HHHHHHHhCCeEEEEcCCCc-HHHHHHHHHHHHHHHc-C--CCceEEEEeCcCc
Confidence 478899999876432 23345778999999988753 4555555554444332 1 2357788999875
No 404
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.02 E-value=2 Score=35.77 Aligned_cols=70 Identities=20% Similarity=0.291 Sum_probs=45.0
Q ss_pred EEEEEecCCcc--------ccHHhHHHHh---------ccCCEEEEEEeCCCCCChH---------HHHHHHHHHhcCCC
Q 032598 18 TIKLWDLGGQP--------RFRSMWERYC---------RAVSAIVYVVDAADYDNLP---------VSRSELHDLLSKPS 71 (137)
Q Consensus 18 ~~~~~Dt~g~~--------~~~~~~~~~~---------~~~~~~i~v~d~~~~~~~~---------~~~~~~~~~~~~~~ 71 (137)
+-.++||+|.. .....|.+++ +-.+|+|+.+|+.+.-+.+ .++.-++++... -
T Consensus 175 eaVlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~t-L 253 (1188)
T COG3523 175 EAVLIDTAGRYITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRET-L 253 (1188)
T ss_pred ceEEEcCCcceecccCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHh-h
Confidence 56789998852 3345666552 3489999999988642211 122334444333 2
Q ss_pred CCCCcEEEEeeCCCCCC
Q 032598 72 LNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 72 ~~~~p~ivv~nK~D~~~ 88 (137)
....|+.+++||.|+..
T Consensus 254 ~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 254 HARLPVYLVLTKADLLP 270 (1188)
T ss_pred ccCCceEEEEecccccc
Confidence 35799999999999875
No 405
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=86.17 E-value=1.1 Score=30.67 Aligned_cols=26 Identities=19% Similarity=0.083 Sum_probs=22.9
Q ss_pred ceeEEEeecccCCChHHHHHHHHHhh
Q 032598 108 EVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 108 ~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
-.+++..||+++.|++.+++.+.+.+
T Consensus 240 ~~pv~~gSa~~~~G~~~ll~~~~~~~ 265 (268)
T cd04170 240 LVPVLCGSALTNIGVRELLDALVHLL 265 (268)
T ss_pred EEEEEEeeCCCCcCHHHHHHHHHHhC
Confidence 46789999999999999999998764
No 406
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=85.84 E-value=4.6 Score=22.97 Aligned_cols=45 Identities=11% Similarity=-0.040 Sum_probs=30.8
Q ss_pred EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHH
Q 032598 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELH 64 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~ 64 (137)
+.+.++|+|+..... ....+..+|.++++++.+. .++......++
T Consensus 40 ~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~~~-~s~~~~~~~~~ 84 (104)
T cd02042 40 YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQPSP-LDLDGLEKLLE 84 (104)
T ss_pred CCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccCCH-HHHHHHHHHHH
Confidence 678899998875433 2366788999999998764 34555544443
No 407
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=85.82 E-value=2.4 Score=28.87 Aligned_cols=71 Identities=15% Similarity=0.195 Sum_probs=40.8
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE-EEEeeCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL-LVLGNKIDKP 87 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~~ 87 (137)
+++.+.++||+|....... ...+..||.++++..++ ..++.........+.......+++. -++.|+.+..
T Consensus 114 ~~yD~ViID~~~~~~~~~~-~~~l~aAD~vlip~~~~-~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~~ 185 (268)
T TIGR01281 114 DDYDVILFDVLGDVVCGGF-ATPLQYADYALVVAAND-FDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDAT 185 (268)
T ss_pred ccCCEEEEecCCccccCcc-ccchhhcCEEEEEecCc-hhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCChH
Confidence 3588999999875322111 12356799999887553 3455554444443332211234553 4788998754
No 408
>CHL00175 minD septum-site determining protein; Validated
Probab=85.55 E-value=4.8 Score=27.65 Aligned_cols=65 Identities=9% Similarity=-0.046 Sum_probs=41.2
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 86 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 86 (137)
.+.+.++|||+... ......+..+|.+++|++++- .++.........+... . ....-++.|+.+.
T Consensus 126 ~yD~VIiDtpp~~~--~~~~~~l~~aD~viiV~~p~~-~si~~~~~~~~~l~~~-~--~~~~~lvvN~~~~ 190 (281)
T CHL00175 126 GYDYILIDCPAGID--VGFINAIAPAQEAIVVTTPEI-TAIRDADRVAGLLEAN-G--IYNVKLLVNRVRP 190 (281)
T ss_pred CCCEEEEeCCCCCC--HHHHHHHHhcCeeEEEcCCCh-HHHHHHHHHHHHHHHc-C--CCceEEEEeccCh
Confidence 57899999987643 233445677999999987653 4455554444444332 1 1235678899874
No 409
>PRK10818 cell division inhibitor MinD; Provisional
Probab=84.14 E-value=6.3 Score=26.84 Aligned_cols=69 Identities=12% Similarity=-0.052 Sum_probs=43.8
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCC----C-CCCCcEEEEeeCCCCC
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKP----S-LNGIPLLVLGNKIDKP 87 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~----~-~~~~p~ivv~nK~D~~ 87 (137)
.+.+.+.|+|+..... ....+..+|.++++++++. .++......+..+.... . ..+.+..++.|+.+..
T Consensus 113 ~yd~viiD~p~~~~~~--~~~~l~~ad~vivv~~p~~-~sl~~~~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~~ 186 (270)
T PRK10818 113 DFEFIVCDSPAGIETG--ALMALYFADEAIITTNPEV-SSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPG 186 (270)
T ss_pred CCCEEEEeCCCCccHH--HHHHHHhCCeEEEEcCCCc-hHHHhHHHHHHHHHHhhccccccccccceEEEEeccCHh
Confidence 6889999998775433 2334688999999998874 45555555555443211 1 1123457788988853
No 410
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=83.65 E-value=8.3 Score=26.68 Aligned_cols=67 Identities=13% Similarity=-0.019 Sum_probs=39.5
Q ss_pred CEEEEEEecCCccccH-HhHH---HHhc--cCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 032598 16 NVTIKLWDLGGQPRFR-SMWE---RYCR--AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 89 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~-~~~~---~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 89 (137)
+..+.++||+|..... ..+. ..++ ..+-.++|+|++.. .++.......+.. . -+-=++.+|.|-...
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~----~-~~~~~I~TKlDet~~ 226 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD----I-HIDGIVFTKFDETAS 226 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCC----C-CCCEEEEEeecCCCC
Confidence 5789999999986432 2222 2222 35678999998642 2333334443322 1 223677999998654
No 411
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=83.53 E-value=1.8 Score=27.65 Aligned_cols=70 Identities=9% Similarity=-0.060 Sum_probs=46.7
Q ss_pred EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC
Q 032598 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL 90 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 90 (137)
+.+.++|||+..... ....+..+|.++++++++.. +......+...+..... .....-++.||.+..+..
T Consensus 95 yD~iiiD~~~~~~~~--~~~~l~~ad~viv~~~~~~~-~i~~~~~~~~~l~~~~~-~~~~~~vv~N~v~~~~~~ 164 (195)
T PF01656_consen 95 YDYIIIDTPPGLSDP--VRNALAAADYVIVPIEPDPS-SIEGAERLIELLKRLGK-KLKIIGVVINRVDPGNES 164 (195)
T ss_dssp SSEEEEEECSSSSHH--HHHHHHTSSEEEEEEESSHH-HHHHHHHHHHHHHHHTH-TEEEEEEEEEEETSCCHH
T ss_pred ccceeecccccccHH--HHHHHHhCceeeeecCCcHH-HHHHHHHHHHHHHHhcc-ccceEEEEEeeeCCCccc
Confidence 788999998764443 45677899999999998753 35555555554443211 112567899999876443
No 412
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=83.46 E-value=7.9 Score=29.67 Aligned_cols=66 Identities=15% Similarity=0.159 Sum_probs=37.7
Q ss_pred CEEEEEEecCCccccHHhHHH---Hhc--cCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 032598 16 NVTIKLWDLGGQPRFRSMWER---YCR--AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~---~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 88 (137)
+..+.++||+|.......... .+. .....++|++... +..+....+..+.. ..+.-+++||.|...
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~-----~~~~gvILTKlDEt~ 498 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH-----AKPQGVVLTKLDETG 498 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh-----hCCeEEEEecCcCcc
Confidence 578999999997544322111 111 1235677777764 34444444443322 135678999999854
No 413
>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins. ; PDB: 1WXQ_A.
Probab=83.12 E-value=0.61 Score=27.53 Aligned_cols=31 Identities=29% Similarity=0.145 Sum_probs=14.1
Q ss_pred EeeCCCCCCC-CCHHHHHHHhCCCCCCCCceeEEEeecc
Q 032598 80 LGNKIDKPEA-LSKEDLMEQMGLKSITDREVCCYMISCK 117 (137)
Q Consensus 80 v~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 117 (137)
++||+|+... .....+.+.+.. ..++++||.
T Consensus 1 AaNK~D~~~a~~ni~kl~~~~~~-------~~vVp~SA~ 32 (109)
T PF08438_consen 1 AANKADLPAADENIEKLKEKYPD-------EPVVPTSAA 32 (109)
T ss_dssp EEE-GGG-S-HHHHHHHHHHHTT--------EEEEE-HH
T ss_pred CCccccccccHhHHHHHHHhCCC-------CceeeccHH
Confidence 5799997432 233445554431 135666664
No 414
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=81.81 E-value=7.9 Score=27.68 Aligned_cols=81 Identities=14% Similarity=0.174 Sum_probs=46.8
Q ss_pred CCEEEEEEecCCccccHH-hHHHH------hccCCE-----EEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEee
Q 032598 15 GNVTIKLWDLGGQPRFRS-MWERY------CRAVSA-----IVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGN 82 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~-~~~~~------~~~~~~-----~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 82 (137)
.++.+-+.||+|+..-.. ++... ++..+. +++++|++-...--...+.+++.... .=++.+
T Consensus 220 r~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~l-------~GiIlT 292 (340)
T COG0552 220 RGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVGL-------DGIILT 292 (340)
T ss_pred cCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcCC-------ceEEEE
Confidence 468899999999865432 22222 333333 88888998764333333444444332 246799
Q ss_pred CCCCCCC-CCHHHHHHHhCCC
Q 032598 83 KIDKPEA-LSKEDLMEQMGLK 102 (137)
Q Consensus 83 K~D~~~~-~~~~~~~~~~~~~ 102 (137)
|+|-... -..-.+...++.+
T Consensus 293 KlDgtAKGG~il~I~~~l~~P 313 (340)
T COG0552 293 KLDGTAKGGIILSIAYELGIP 313 (340)
T ss_pred ecccCCCcceeeeHHHHhCCC
Confidence 9995432 2234566666654
No 415
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=81.79 E-value=3.2 Score=26.54 Aligned_cols=69 Identities=19% Similarity=0.190 Sum_probs=38.1
Q ss_pred CEEEEEEecCCccccHHh--HHHH---hccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC
Q 032598 16 NVTIKLWDLGGQPRFRSM--WERY---CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL 90 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~--~~~~---~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 90 (137)
+....++++.|...-..+ .... .-..+.++.|+|+............+..-... .+ ++++||+|+.+..
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~---AD---vIvlnK~D~~~~~ 157 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAF---AD---VIVLNKIDLVSDE 157 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT----S---EEEEE-GGGHHHH
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchh---cC---EEEEeccccCChh
Confidence 456778888886444333 1111 22368999999997642222222322222222 44 8899999997654
No 416
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=81.42 E-value=9.8 Score=27.64 Aligned_cols=36 Identities=22% Similarity=0.187 Sum_probs=26.7
Q ss_pred EEEEEEecCCccccH-------HhHHHHhccCCEEEEEEeCCC
Q 032598 17 VTIKLWDLGGQPRFR-------SMWERYCRAVSAIVYVVDAAD 52 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~-------~~~~~~~~~~~~~i~v~d~~~ 52 (137)
..+.+.|+||..... ......++.+|+++.|+++.+
T Consensus 67 a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 67 TTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred ceEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 478999999975432 233345788999999999864
No 417
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=81.13 E-value=7.1 Score=27.20 Aligned_cols=69 Identities=17% Similarity=0.158 Sum_probs=40.1
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE-EEEeeCCCC
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL-LVLGNKIDK 86 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~ 86 (137)
++.+.++||+|........ ..+..||.++++++++- .++......++.+.......+++. -++.|+.+.
T Consensus 115 ~yD~IiIDt~~~l~~~a~~-aal~~AD~viIp~~p~~-~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~ 184 (290)
T CHL00072 115 EYDIILFDVLGDVVCGGFA-APLNYADYCIIITDNGF-DALFAANRIAASVREKARTHPLRLAGLVGNRTSK 184 (290)
T ss_pred cCCEEEEecCCcceechhh-hhhhcCCEEEEEecCCH-HHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCc
Confidence 5789999998763322221 23567999999887653 445554444433322211233443 478899874
No 418
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=80.51 E-value=1.6 Score=31.65 Aligned_cols=76 Identities=21% Similarity=0.173 Sum_probs=47.4
Q ss_pred EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCC--C---ChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 032598 12 VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADY--D---NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 86 (137)
Q Consensus 12 ~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~--~---~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 86 (137)
+....+.+++.|.||+..+...+-....+||..++++.+... + +.....+.. .++.. ...-.++++.+||+|.
T Consensus 77 ~~t~k~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~eh-alla~-tlgv~qliv~v~k~D~ 154 (391)
T KOG0052|consen 77 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH-ALLAF-TLGVKQLIVGVNKMDS 154 (391)
T ss_pred ccceeEEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhh-hhhhc-cccceeeeEEeecccc
Confidence 334567889999999988877666667789988888777321 1 112211111 11111 2234678899999998
Q ss_pred CCC
Q 032598 87 PEA 89 (137)
Q Consensus 87 ~~~ 89 (137)
.+.
T Consensus 155 ~~~ 157 (391)
T KOG0052|consen 155 TEP 157 (391)
T ss_pred cCC
Confidence 654
No 419
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=80.41 E-value=11 Score=27.49 Aligned_cols=75 Identities=13% Similarity=0.047 Sum_probs=39.4
Q ss_pred CCEEEEEEecCCccccHHhHHHH---hc---cCCEEEEEEeCCCC-CChHHHHHHHHHHhcCCCCCC-CcEEEEeeCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERY---CR---AVSAIVYVVDAADY-DNLPVSRSELHDLLSKPSLNG-IPLLVLGNKIDK 86 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~---~~---~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~-~p~ivv~nK~D~ 86 (137)
.+..+.++||+|........... +. ...-.++|++++.. +...+....+..........- -+.=++.+|.|-
T Consensus 214 ~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDE 293 (374)
T PRK14722 214 RNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDE 293 (374)
T ss_pred cCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEecccc
Confidence 35688999999986544322222 22 23456899998863 333333222222221111000 123567899997
Q ss_pred CCC
Q 032598 87 PEA 89 (137)
Q Consensus 87 ~~~ 89 (137)
...
T Consensus 294 t~~ 296 (374)
T PRK14722 294 ASN 296 (374)
T ss_pred CCC
Confidence 543
No 420
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=79.50 E-value=2.7 Score=28.96 Aligned_cols=27 Identities=15% Similarity=0.097 Sum_probs=23.2
Q ss_pred CceeEEEeecccCCChHHHHHHHHHhh
Q 032598 107 REVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 107 ~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
.-++++..||.++.|+..+++.+.+.+
T Consensus 241 ~~~PV~~gSa~~~~Gi~~lld~i~~~~ 267 (270)
T cd01886 241 KIVPVLCGSAFKNKGVQPLLDAVVDYL 267 (270)
T ss_pred cEEEEEeCcCCCCcCHHHHHHHHHHhc
Confidence 346788899999999999999998765
No 421
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=79.27 E-value=8.6 Score=21.90 Aligned_cols=46 Identities=11% Similarity=0.131 Sum_probs=28.1
Q ss_pred cccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 28 PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 28 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
......++..++.+|.+|++.|..+......+... . ...++|++..
T Consensus 36 ~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~---a----kk~~ip~~~~ 81 (97)
T PF10087_consen 36 EKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKA---A----KKYGIPIIYS 81 (97)
T ss_pred ccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHH---H----HHcCCcEEEE
Confidence 33444567788889999999988775443333221 2 1246777654
No 422
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.08 E-value=11 Score=27.28 Aligned_cols=48 Identities=17% Similarity=0.133 Sum_probs=28.7
Q ss_pred cCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH
Q 032598 40 AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK 92 (137)
Q Consensus 40 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 92 (137)
..+++++.+.++-. .+..++..+..-+ ...+++|-|+-|+|.......
T Consensus 129 RVH~cLYFI~P~gh-gL~p~Di~~Mk~l----~~~vNiIPVI~KaD~lT~~El 176 (366)
T KOG2655|consen 129 RVHCCLYFISPTGH-GLKPLDIEFMKKL----SKKVNLIPVIAKADTLTKDEL 176 (366)
T ss_pred ceEEEEEEeCCCCC-CCcHhhHHHHHHH----hccccccceeeccccCCHHHH
Confidence 46899999987642 3333322221111 245778888999998765443
No 423
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=78.79 E-value=5.5 Score=28.84 Aligned_cols=36 Identities=22% Similarity=0.376 Sum_probs=26.5
Q ss_pred EEEEEEecCCcccc----HHhHHHH---hccCCEEEEEEeCCC
Q 032598 17 VTIKLWDLGGQPRF----RSMWERY---CRAVSAIVYVVDAAD 52 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~----~~~~~~~---~~~~~~~i~v~d~~~ 52 (137)
..++++|++|.-+. +.+-..| ++.+|+++.|+++..
T Consensus 67 ~~ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 67 APVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred eeeEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 57899999886433 3333344 688999999999884
No 424
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=78.05 E-value=21 Score=25.11 Aligned_cols=79 Identities=18% Similarity=0.164 Sum_probs=49.0
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHH
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKED 94 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~ 94 (137)
+.+.+.++|+|+.... .....+..+|.+++|.+.+- .++....+.++.+... +..+-++.|+.. .......+
T Consensus 203 ~~~D~VIID~p~~~~~--~~~~~L~~AD~vliV~~~~~-~sl~~a~r~l~~l~~~----~~~~~lVv~~~~-~~~~~~~~ 274 (322)
T TIGR03815 203 RGGDLVVVDLPRRLTP--AAETALESADLVLVVVPADV-RAVAAAARVCPELGRR----NPDLRLVVRGPA-PAGLDPEE 274 (322)
T ss_pred hcCCEEEEeCCCCCCH--HHHHHHHHCCEEEEEcCCcH-HHHHHHHHHHHHHhhh----CCCeEEEEeCCC-CCCCCHHH
Confidence 3578999999987533 34567889999999997653 3555555555544332 123444566543 23345567
Q ss_pred HHHHhCC
Q 032598 95 LMEQMGL 101 (137)
Q Consensus 95 ~~~~~~~ 101 (137)
+.+.++.
T Consensus 275 i~~~lg~ 281 (322)
T TIGR03815 275 IAESLGL 281 (322)
T ss_pred HHHHhCC
Confidence 7777764
No 425
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=77.26 E-value=15 Score=27.30 Aligned_cols=79 Identities=11% Similarity=-0.072 Sum_probs=43.7
Q ss_pred CEEEEEEecCCccccHH----hHHHHhc--cCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 032598 16 NVTIKLWDLGGQPRFRS----MWERYCR--AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 89 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~----~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 89 (137)
+..+.++||+|...... .+...++ ..+.+++|+|++-. ..+.......+.. . -.-=++++|.|-...
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~----~-~idglI~TKLDET~k 392 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD----I-HIDGIVFTKFDETAS 392 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcC----C-CCCEEEEEcccCCCC
Confidence 46899999999854322 1223332 35678899987642 2333333333322 1 123677999997654
Q ss_pred CC-HHHHHHHhCC
Q 032598 90 LS-KEDLMEQMGL 101 (137)
Q Consensus 90 ~~-~~~~~~~~~~ 101 (137)
.- .-.+....+.
T Consensus 393 ~G~iLni~~~~~l 405 (436)
T PRK11889 393 SGELLKIPAVSSA 405 (436)
T ss_pred ccHHHHHHHHHCc
Confidence 22 2344444443
No 426
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=76.09 E-value=2.3 Score=30.65 Aligned_cols=40 Identities=18% Similarity=0.115 Sum_probs=25.1
Q ss_pred CCCcEEEEeeCCCCCCCCC---HHHHHHHhCCCCCCCCceeEEEeecc
Q 032598 73 NGIPLLVLGNKIDKPEALS---KEDLMEQMGLKSITDREVCCYMISCK 117 (137)
Q Consensus 73 ~~~p~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~ 117 (137)
..+|+++++||.|...... ...+.+.... .+..++++||.
T Consensus 205 t~KP~lyvaN~~e~~~~~~n~~~~~i~~~~~~-----~~~~vV~~sA~ 247 (372)
T COG0012 205 TAKPMLYVANVSEDDLANLNEYVKRLKELAAK-----ENAEVVPVSAA 247 (372)
T ss_pred hcCCeEEEEECCcccccchhHHHHHHHHHhhh-----cCCcEEEeeHH
Confidence 4689999999999875433 2333332221 12348888887
No 427
>KOG1249 consensus Predicted GTPases [General function prediction only]
Probab=75.22 E-value=7 Score=29.75 Aligned_cols=89 Identities=21% Similarity=0.091 Sum_probs=48.2
Q ss_pred hccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHHhCCC-------------CC
Q 032598 38 CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLK-------------SI 104 (137)
Q Consensus 38 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-------------~~ 104 (137)
.++-..+..|.|.++... .+...+.... ...-+++.+||+|+.........+...... ..
T Consensus 108 ~~~~~~~~~vvd~~d~p~--~i~p~~~~~v-----~~~~~~v~~n~vdl~p~d~~~~~c~rc~~l~~~~~vk~~~~en~~ 180 (572)
T KOG1249|consen 108 QENPALARKVVDLSDEPC--SIDPLLTNDV-----GSPRLFVDGNKVDLLPKDSRPGYCQRCHSLLHYGMIKAGGGENLN 180 (572)
T ss_pred hhcccceEEeeecccCcc--ccccchhhcc-----cCCceEeeccccccccccccchHHHHHHhhcccceeecccccCCC
Confidence 334455667777766432 1112211111 122269999999998765532222222110 00
Q ss_pred CCC-ceeEEEeecccCCChHHHHHHHHHhh
Q 032598 105 TDR-EVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 105 ~~~-~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
... -.+...+|+++|.|+++++-.+....
T Consensus 181 p~~~f~~~~~~r~ktgyg~eeLI~~lvd~~ 210 (572)
T KOG1249|consen 181 PDFDFDHVDLIRAKTGYGIEELIVMLVDIV 210 (572)
T ss_pred cccchhhhhhhhhhhcccHHHHHHHhhhee
Confidence 001 12246689999999999998887653
No 428
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=74.56 E-value=22 Score=23.50 Aligned_cols=68 Identities=10% Similarity=0.003 Sum_probs=41.5
Q ss_pred CEEEEEEecCCccc-cHHhHHHHhcc--CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 032598 16 NVTIKLWDLGGQPR-FRSMWERYCRA--VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 87 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~-~~~~~~~~~~~--~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 87 (137)
.+.+.++|||.... .+......+.. ++.+++|..+.. .+.......+..+... . -...-+|.|+....
T Consensus 113 ~yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p~~-~s~~~~~~~l~~l~~~-~--~~~~glVlN~~~~~ 183 (217)
T cd02035 113 LYDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPEK-LPLYETERAITELALY-G--IPVDAVVVNRVLPA 183 (217)
T ss_pred CCCEEEECCCCchHHHHHHHHHHccCCCceEEEEEeCCCc-cHHHHHHHHHHHHHHC-C--CCCCEEEEeCCcCc
Confidence 38899999986532 23333444443 478999988764 4566666555555432 1 12236788998754
No 429
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=74.54 E-value=21 Score=25.47 Aligned_cols=74 Identities=18% Similarity=0.105 Sum_probs=43.9
Q ss_pred CCEEEEEEecCCccccHHhHHHHhc--------cCCEEEEEEeCCCC------CChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCR--------AVSAIVYVVDAADY------DNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~--------~~~~~i~v~d~~~~------~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
+++...+.+|.|...-.+....|.. ..||++-|+|+-.. .+.+.. +-++..+. ...+ -++
T Consensus 144 GkfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~--i~EA~~Qi-A~AD---~II 217 (391)
T KOG2743|consen 144 GKFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGL--INEATRQI-ALAD---RII 217 (391)
T ss_pred CCcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccc--hHHHHHHH-hhhh---eee
Confidence 4577889999998766666655543 26999999998642 111111 11112111 1122 567
Q ss_pred eeCCCCCCCCCHHH
Q 032598 81 GNKIDKPEALSKED 94 (137)
Q Consensus 81 ~nK~D~~~~~~~~~ 94 (137)
.||.|+........
T Consensus 218 ~NKtDli~~e~~~~ 231 (391)
T KOG2743|consen 218 MNKTDLVSEEEVKK 231 (391)
T ss_pred eccccccCHHHHHH
Confidence 99999987755433
No 430
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=73.54 E-value=24 Score=26.04 Aligned_cols=80 Identities=14% Similarity=0.065 Sum_probs=41.2
Q ss_pred CCEEEEEEecCCccccHH----hHHHHhc--cCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRS----MWERYCR--AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~----~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 88 (137)
++..+.++||+|...... .+..+.. ..+.+++|+++.. ...+....+..+. . - -+--++.+|.|-..
T Consensus 284 ~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~f~-~---l-~i~glI~TKLDET~ 356 (407)
T PRK12726 284 NCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPKLA-E---I-PIDGFIITKMDETT 356 (407)
T ss_pred CCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHhcC-c---C-CCCEEEEEcccCCC
Confidence 357899999999854432 2222222 3456677776632 3333333322221 1 1 23367799999764
Q ss_pred CC-CHHHHHHHhCC
Q 032598 89 AL-SKEDLMEQMGL 101 (137)
Q Consensus 89 ~~-~~~~~~~~~~~ 101 (137)
.. ..-.+....+.
T Consensus 357 ~~G~~Lsv~~~tgl 370 (407)
T PRK12726 357 RIGDLYTVMQETNL 370 (407)
T ss_pred CccHHHHHHHHHCC
Confidence 32 22334444443
No 431
>PRK11670 antiporter inner membrane protein; Provisional
Probab=73.15 E-value=30 Score=25.16 Aligned_cols=68 Identities=13% Similarity=0.065 Sum_probs=39.1
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE-EEeeCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL-VLGNKIDKP 87 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~ 87 (137)
+.+.+.++|||..-....+....+-.+|++++|..+... ++.+..+.+..+.+ .+.|++ ++.|+.+..
T Consensus 214 ~~yDyvIID~PPg~gd~~l~~~~l~aad~viiV~tp~~~-s~~da~~~i~~~~~----~~~~ilGiV~Nm~~~~ 282 (369)
T PRK11670 214 PDLDYLVLDMPPGTGDIQLTLAQNIPVTGAVVVTTPQDI-ALIDAKKGIVMFEK----VEVPVLGIVENMSMHI 282 (369)
T ss_pred ccCCEEEEeCCCCCchHHHHHhhhccCCeEEEEecCchh-HHHHHHHHHHHHhc----cCCCeEEEEEcCCccc
Confidence 467899999976432222222223358999999877543 33334344333322 456664 778998754
No 432
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=73.03 E-value=14 Score=25.31 Aligned_cols=70 Identities=13% Similarity=0.101 Sum_probs=39.6
Q ss_pred CCEEEEEEecCCccccHHh-HHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE-EEeeCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSM-WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL-VLGNKID 85 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~-~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D 85 (137)
+++.+.++||+|....... ....+.-||.+++++.++ +.++......++.+.......+.++. ++.|+..
T Consensus 116 ~~yD~ilID~~~~~~~~~l~~~~a~~aad~vlIp~~~e-~~sl~g~~~ll~~i~~~~~~~~l~i~giv~n~~~ 187 (274)
T PRK13235 116 WNLDYVFYDVLGDVVCGGFAMPIRDGKAEEIYIVCSGE-MMAMYAANNICKGILKYADAGGVRLGGLICNSRK 187 (274)
T ss_pred CCCCEEEEECCCCCccCCcccccccccccEEEEEecCc-hhHHHHHHHHHHHHHHHhhcCCCceeEEEEecCC
Confidence 4588999999765322111 111123688888888654 55676666555544332122445543 6678753
No 433
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=72.65 E-value=29 Score=26.77 Aligned_cols=57 Identities=18% Similarity=0.065 Sum_probs=30.7
Q ss_pred CCCcEEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEe--ecccCCChHHHHHHHHHhhh
Q 032598 73 NGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMI--SCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 73 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--Sa~~~~~v~~~~~~i~~~~~ 134 (137)
.++|+++++||.|.........+.+..... ++.+..+ =++=|+|-.++=+.+.+.+.
T Consensus 371 FGvPvVVAINKFd~DTe~Ei~~I~~~c~e~-----Gv~va~~~~~~~Gg~Gai~LA~aVveA~~ 429 (557)
T PRK13505 371 FGVPVVVAINKFVTDTDAEIAALKELCEEL-----GVEVALSEVWAKGGEGGVELAEKVVELIE 429 (557)
T ss_pred cCCCEEEEEeCCCCCCHHHHHHHHHHHHHc-----CCCEEEecccccCCcchHHHHHHHHHHHh
Confidence 689999999999986553333332322211 1123322 22335565555555555444
No 434
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=72.31 E-value=11 Score=25.47 Aligned_cols=69 Identities=13% Similarity=0.099 Sum_probs=37.8
Q ss_pred CCEEEEEEecCCccccHHhH-HHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE-EEeeCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMW-ERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL-VLGNKI 84 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~-~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~ 84 (137)
+++.+.++||+|........ .....-+|.+++++.++. .++......+..+.......+.++. ++.|+.
T Consensus 115 ~~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~~-~sl~~~~~l~~~i~~~~~~~~~~l~gVv~n~~ 185 (270)
T cd02040 115 DDLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEM-MALYAANNICKGILKYAKSGGVRLGGLICNSR 185 (270)
T ss_pred cCCCEEEEecccCcccCCcccccccccccEEEEEecCch-HHHHHHHHHHHHHHHhCccCCCceEEEEEecC
Confidence 35789999998764322221 112335899999988754 3555554444433332222345554 445654
No 435
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=71.75 E-value=8.5 Score=26.86 Aligned_cols=63 Identities=22% Similarity=0.260 Sum_probs=40.8
Q ss_pred EEEeCCEEEEEEec-CCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 11 KVTKGNVTIKLWDL-GGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 11 ~~~~~~~~~~~~Dt-~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.++++...+-++|| ||..+.--..-.+++.+++.++|--+.+ -++.+.++...-+.+ .++|++
T Consensus 151 ~vdwg~lDyLviDtPPGtsDehls~~~~~~~~~gAviVTTPQ~-vAl~Dv~K~i~fc~K----~~I~il 214 (300)
T KOG3022|consen 151 DVDWGELDYLVIDTPPGTSDEHLSLVQFLRESDGAVIVTTPQE-VALQDVRKEIDFCRK----AGIPIL 214 (300)
T ss_pred cCCCCCcCEEEEeCCCCCChhhhheeecccccCceEEEeCchh-hhhHHHHhhhhhhhh----cCCceE
Confidence 35677889999999 5554443344456677799888887665 356666666554433 456665
No 436
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=71.46 E-value=38 Score=25.16 Aligned_cols=67 Identities=10% Similarity=0.060 Sum_probs=38.2
Q ss_pred CEEEEEEecCCccccH----HhHHHHhc---cCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 032598 16 NVTIKLWDLGGQPRFR----SMWERYCR---AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~----~~~~~~~~---~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 88 (137)
+..+.++||+|..... .....++. ...-..+|++++-. ...+......+.. .+ +--++.+|.|-..
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~----~~-~~~vI~TKlDet~ 371 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSR----LP-LDGLIFTKLDETS 371 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCC----CC-CCEEEEecccccc
Confidence 5789999999985443 23333444 23466788887642 3333333333321 11 2367899999754
Q ss_pred C
Q 032598 89 A 89 (137)
Q Consensus 89 ~ 89 (137)
.
T Consensus 372 ~ 372 (424)
T PRK05703 372 S 372 (424)
T ss_pred c
Confidence 3
No 437
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=71.39 E-value=25 Score=28.08 Aligned_cols=69 Identities=16% Similarity=0.109 Sum_probs=44.5
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 88 (137)
+.+.+.++|||+...... .......+|++++|.... ..+...+...++.+... .....-+|.|+.|...
T Consensus 654 ~~yD~IiID~pp~~~~~d-~~~l~~~~D~vl~v~~~~-~~~~~~~~~~~~~l~~~---~~~~~GvvlN~~~~~~ 722 (754)
T TIGR01005 654 LYSDCVVVDVGTADPVRD-MRAAARLAIIMLLVTAYD-RVVVECGRADAQGISRL---NGEVTGVFLNMLDPND 722 (754)
T ss_pred hhCCEEEEcCCCcchhHH-HHHhhhhCCeEEEEEEeC-ceeHHHHHHHHHHHHhc---CCceEEEEecCCChhh
Confidence 357899999988754332 233456799999998753 44566666666555432 1223458899998643
No 438
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.37 E-value=22 Score=27.05 Aligned_cols=73 Identities=16% Similarity=0.132 Sum_probs=46.0
Q ss_pred CCEEEEEEecCCccccH-HhHHH---H--hccCCEEEEEEeCCCC-CChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFR-SMWER---Y--CRAVSAIVYVVDAADY-DNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 87 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~-~~~~~---~--~~~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 87 (137)
.++.+.++||+|+..-. .++.. + ....|-+++|-.+--. ++.+++...-..+........+. -++++|+|-.
T Consensus 465 ~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~~r~id-~~~ltk~dtv 543 (587)
T KOG0781|consen 465 QGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTPRLID-GILLTKFDTV 543 (587)
T ss_pred cCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCCccccc-eEEEEeccch
Confidence 47889999999985443 22222 2 3568999999876653 56777666555554432111222 4678999975
Q ss_pred C
Q 032598 88 E 88 (137)
Q Consensus 88 ~ 88 (137)
+
T Consensus 544 ~ 544 (587)
T KOG0781|consen 544 D 544 (587)
T ss_pred h
Confidence 4
No 439
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=71.09 E-value=20 Score=24.26 Aligned_cols=69 Identities=14% Similarity=0.105 Sum_probs=43.7
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCC--hHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDN--LPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 87 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 87 (137)
++.+.+.|+.|..... ....+..+|.+++=.-.+..+. -.....++....+. ...++|.-++.+++.-.
T Consensus 83 ~~d~VlvDleG~as~~--~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~-~~~~ip~~Vl~Tr~~~~ 153 (231)
T PF07015_consen 83 GFDFVLVDLEGGASEL--NDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKA-ERRDIPAAVLFTRVPAA 153 (231)
T ss_pred CCCEEEEeCCCCCchh--HHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHh-hCCCCCeeEEEecCCcc
Confidence 4678999998864433 3445678999888776664321 12223344444432 24679999999999743
No 440
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=69.91 E-value=6.3 Score=27.12 Aligned_cols=27 Identities=19% Similarity=0.210 Sum_probs=23.3
Q ss_pred CceeEEEeecccCCChHHHHHHHHHhh
Q 032598 107 REVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 107 ~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
.-++++..||.++.|+..|++.|.+.+
T Consensus 238 ~~~Pv~~gsa~~~~Gv~~Lld~i~~~~ 264 (267)
T cd04169 238 ELTPVFFGSALNNFGVQELLDALVDLA 264 (267)
T ss_pred CEEEEEecccccCcCHHHHHHHHHHHC
Confidence 346788899999999999999998765
No 441
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=69.42 E-value=33 Score=25.18 Aligned_cols=68 Identities=13% Similarity=0.069 Sum_probs=40.7
Q ss_pred CCEEEEEEecCCccccHH----hHHHHhccC--C-EEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRS----MWERYCRAV--S-AIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 87 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~----~~~~~~~~~--~-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 87 (137)
.+..+.++||+|...... ....++... + -.++|+|++.. ..++...+..+... -+-=++.+|.|-.
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~~-----~~~~~I~TKlDet 325 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSPF-----SYKTVIFTKLDET 325 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcCC-----CCCEEEEEeccCC
Confidence 467899999999755332 223333322 3 68899999864 34444444444211 1346779999975
Q ss_pred CC
Q 032598 88 EA 89 (137)
Q Consensus 88 ~~ 89 (137)
..
T Consensus 326 ~~ 327 (388)
T PRK12723 326 TC 327 (388)
T ss_pred Cc
Confidence 43
No 442
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=67.89 E-value=40 Score=25.19 Aligned_cols=68 Identities=12% Similarity=0.091 Sum_probs=37.9
Q ss_pred CCEEEEEEecCCccccH-H---hHHHHhc-----cCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCC
Q 032598 15 GNVTIKLWDLGGQPRFR-S---MWERYCR-----AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 85 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~-~---~~~~~~~-----~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 85 (137)
.+..+.++||+|..... . .+..+++ ...-.++|+|++-. .++.......+ .. - -+-=++.+|.|
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~--~~~~~~~~~~f-~~---~-~~~glIlTKLD 370 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSS--YHHTLTVLKAY-ES---L-NYRRILLTKLD 370 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC--HHHHHHHHHHh-cC---C-CCCEEEEEccc
Confidence 46788999999975332 2 2222222 13468899998764 22333333322 11 1 12367799999
Q ss_pred CCCC
Q 032598 86 KPEA 89 (137)
Q Consensus 86 ~~~~ 89 (137)
-...
T Consensus 371 Et~~ 374 (432)
T PRK12724 371 EADF 374 (432)
T ss_pred CCCC
Confidence 7543
No 443
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=67.09 E-value=38 Score=23.16 Aligned_cols=50 Identities=12% Similarity=0.003 Sum_probs=31.9
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHh
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLL 67 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~ 67 (137)
.+.+.++|||..... .........+|++++|+.... .+...+......+.
T Consensus 212 ~yD~ViiD~pp~~~~-~d~~~~~~~~d~vilV~~~~~-t~~~~~~~~~~~l~ 261 (274)
T TIGR03029 212 DYDVVIVDTPSAEHS-SDAQIVATRARGTLIVSRVNE-TRLHELTSLKEHLS 261 (274)
T ss_pred cCCEEEEeCCCcccc-cHHHHHHHhCCeEEEEEECCC-CCHHHHHHHHHHHH
Confidence 567899999765332 223345667899999887765 35555555555554
No 444
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.77 E-value=10 Score=26.23 Aligned_cols=46 Identities=28% Similarity=0.328 Sum_probs=30.9
Q ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 032598 41 VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 89 (137)
Q Consensus 41 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 89 (137)
..++++|||.+....+..+..|+....- +..++ .+-++||.|....
T Consensus 79 l~a~vmvfdlse~s~l~alqdwl~htdi--nsfdi-llcignkvdrvph 124 (418)
T KOG4273|consen 79 LQAFVMVFDLSEKSGLDALQDWLPHTDI--NSFDI-LLCIGNKVDRVPH 124 (418)
T ss_pred eeeEEEEEeccchhhhHHHHhhcccccc--ccchh-heecccccccccc
Confidence 5689999999998888888887653211 11222 2456999997643
No 445
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=62.78 E-value=16 Score=25.04 Aligned_cols=69 Identities=10% Similarity=0.121 Sum_probs=37.8
Q ss_pred CCEEEEEEecCCccccHHhHHHHh--ccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE-EEeeCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYC--RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL-VLGNKID 85 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D 85 (137)
+.+.+.++||+|..-...+.. .+ ..||.+++++.++ ..++......+..+.......+++++ ++.|+..
T Consensus 117 ~~yD~iliD~~~~~~~~al~~-~~~~~aad~viIp~~p~-~~sl~g~~~l~~~i~~~~~~~~l~~~Giv~n~~~ 188 (275)
T PRK13233 117 DDLDFVFFDVLGDVVCGGFAM-PIRDGKAQEVYIVASGE-MMAIYAANNICKGLVKYAEQSGVRLGGIICNSRN 188 (275)
T ss_pred CCCCEEEEecCCceeeccccc-cchhccCceEEEecccc-HHHHHHHHHHHHHHHHHHhcCCCceeEEEeeCCC
Confidence 357889999977432211110 00 2588888888774 34565555544433222112455554 7788753
No 446
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=62.47 E-value=26 Score=26.51 Aligned_cols=15 Identities=13% Similarity=0.206 Sum_probs=6.7
Q ss_pred CcEEEEeeCCCCCCC
Q 032598 75 IPLLVLGNKIDKPEA 89 (137)
Q Consensus 75 ~p~ivv~nK~D~~~~ 89 (137)
++-.+|+==.|+..+
T Consensus 99 l~~t~vvIvlDlS~P 113 (472)
T PF05783_consen 99 LPNTLVVIVLDLSKP 113 (472)
T ss_pred ccceEEEEEecCCCh
Confidence 443344444566543
No 447
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=59.98 E-value=35 Score=27.53 Aligned_cols=70 Identities=11% Similarity=0.006 Sum_probs=37.0
Q ss_pred CEEEEEEecCCccccHHhHHHHh------ccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYC------RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 89 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~------~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 89 (137)
+..+.++||+|...........+ ...+-.++|+|++.. .+.+......+..... .+ +-=++++|.|-...
T Consensus 263 ~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~~-~~-i~glIlTKLDEt~~ 338 (767)
T PRK14723 263 DKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASH--GDTLNEVVHAYRHGAG-ED-VDGCIITKLDEATH 338 (767)
T ss_pred CCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCc--HHHHHHHHHHHhhccc-CC-CCEEEEeccCCCCC
Confidence 55799999999654332211111 234578899998752 2222222222221100 01 23567999997643
No 448
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=58.77 E-value=47 Score=21.52 Aligned_cols=86 Identities=12% Similarity=0.094 Sum_probs=51.8
Q ss_pred cCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC-CCCC---HHHHHHHhCCCCCCCCceeEEEee
Q 032598 40 AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP-EALS---KEDLMEQMGLKSITDREVCCYMIS 115 (137)
Q Consensus 40 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~S 115 (137)
..|.++|++|.....+++....-+..+.-... -++-++++-|=.... .... +.++...+.. +++.+-
T Consensus 64 rIDlIVFvinl~sk~SL~~ve~SL~~vd~~ff-lGKVCfl~t~a~~~~~~sv~~~~V~kla~~y~~--------plL~~~ 134 (176)
T PF11111_consen 64 RIDLIVFVINLHSKYSLQSVEASLSHVDPSFF-LGKVCFLATNAGRESHCSVHPNEVRKLAATYNS--------PLLFAD 134 (176)
T ss_pred eeEEEEEEEecCCcccHHHHHHHHhhCChhhh-ccceEEEEcCCCcccccccCHHHHHHHHHHhCC--------CEEEee
Confidence 37999999999999998877766555533222 344445444433332 1222 3455565554 366666
Q ss_pred cccCCChHHHHHHHHHhhh
Q 032598 116 CKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 116 a~~~~~v~~~~~~i~~~~~ 134 (137)
=.+.++...+=+.+.+.+.
T Consensus 135 le~~~~~~~lAqRLL~~lq 153 (176)
T PF11111_consen 135 LENEEGRTSLAQRLLRMLQ 153 (176)
T ss_pred cccchHHHHHHHHHHHHHH
Confidence 6666676666666665543
No 449
>PRK13236 nitrogenase reductase; Reviewed
Probab=58.06 E-value=35 Score=23.81 Aligned_cols=85 Identities=12% Similarity=0.100 Sum_probs=43.0
Q ss_pred CCEEEEEEecCCccccHHh-HHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE-EEEeeCCCCCCC-CC
Q 032598 15 GNVTIKLWDLGGQPRFRSM-WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL-LVLGNKIDKPEA-LS 91 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~-~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~~~~-~~ 91 (137)
+++.+.++||+|....... ....+..||.+++|..+. +.++.........+.+.....+.++ -++.|+.+.... ..
T Consensus 120 ~~yD~vliD~~~~~~~~~~~~~~~l~aAD~vIIvttpe-~~sl~g~~~~~~~l~k~~~~~~l~i~gIv~Nr~~~~~~~~i 198 (296)
T PRK13236 120 QDLDFVSYDVLGDVVCGGFAMPIREGKAQEIYIVTSGE-MMAMYAANNIARGILKYAHTGGVRLGGLICNSRNVDREIEL 198 (296)
T ss_pred ccCCEEEEeccccceeccccccchhccCCEEEEecCcc-hHHHHHHHHHHHHHHHHhhCCCceeEEEEecCCCCcchHHH
Confidence 3567789999754221111 111145788888888664 3456555433333333222244554 366788654322 12
Q ss_pred HHHHHHHhC
Q 032598 92 KEDLMEQMG 100 (137)
Q Consensus 92 ~~~~~~~~~ 100 (137)
.+.+.+.++
T Consensus 199 le~l~~~~g 207 (296)
T PRK13236 199 IETLAKRLN 207 (296)
T ss_pred HHHHHHHhC
Confidence 244555554
No 450
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=57.58 E-value=70 Score=23.77 Aligned_cols=67 Identities=12% Similarity=0.128 Sum_probs=38.7
Q ss_pred CCEEEEEEecCCccccH----HhHHHHhcc--CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFR----SMWERYCRA--VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~----~~~~~~~~~--~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 88 (137)
.+..+.++||.|...++ +.+..++.. ..-..+|++++.. .+++...+..+... ++ -=++++|.|-..
T Consensus 280 ~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~----~i-~~~I~TKlDET~ 352 (407)
T COG1419 280 RDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLF----PI-DGLIFTKLDETT 352 (407)
T ss_pred hcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccC----Cc-ceeEEEcccccC
Confidence 45689999999986554 334444443 3455677777652 33444444444221 12 145689999654
No 451
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=57.08 E-value=9.8 Score=26.08 Aligned_cols=73 Identities=19% Similarity=0.071 Sum_probs=39.1
Q ss_pred CEEEEEEecCCcccc----HH--hHHHHhccCCEEEEEEeCCCCC----ChHHHHHHHHHHhcCCCCCCCcEEEEeeCCC
Q 032598 16 NVTIKLWDLGGQPRF----RS--MWERYCRAVSAIVYVVDAADYD----NLPVSRSELHDLLSKPSLNGIPLLVLGNKID 85 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~----~~--~~~~~~~~~~~~i~v~d~~~~~----~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 85 (137)
.-+.-+.|+|||... .+ .+-.++++.+.-+.++...|.. +-..+..++-.+. ..-....|-+-+..|+|
T Consensus 96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~-tMl~melphVNvlSK~D 174 (290)
T KOG1533|consen 96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLA-TMLHMELPHVNVLSKAD 174 (290)
T ss_pred cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHH-HHHhhcccchhhhhHhH
Confidence 456889999998432 11 2223355566555555544422 1222222222221 11235677788999999
Q ss_pred CCCC
Q 032598 86 KPEA 89 (137)
Q Consensus 86 ~~~~ 89 (137)
+.+.
T Consensus 175 l~~~ 178 (290)
T KOG1533|consen 175 LLKK 178 (290)
T ss_pred HHHh
Confidence 8654
No 452
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=57.05 E-value=19 Score=24.57 Aligned_cols=68 Identities=13% Similarity=0.109 Sum_probs=36.1
Q ss_pred CEEEEEEecCCccccHHh-HHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE-EEeeCC
Q 032598 16 NVTIKLWDLGGQPRFRSM-WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL-VLGNKI 84 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~-~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~ 84 (137)
++.+.++||+|....... ......-||.+++++.++. .++......+..+.......+.++. ++.|+.
T Consensus 115 ~yD~iiIDt~~~~~~~~~~~~~~~~aAD~viip~~p~~-~sl~~~~~l~~~i~~~~~~~~~~~~giv~n~~ 184 (275)
T TIGR01287 115 DLDFVFYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEM-MALYAANNICKGILKYAKSGGVRLGGLICNSR 184 (275)
T ss_pred cCCEEEEeccCcceecceeeccccccccEEEEEecchH-HHHHHHHHHHHHHHHHHhcCCCeeeEEEEcCC
Confidence 578999999875432221 1111235899999987764 4555554444333222111344443 455653
No 453
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=56.93 E-value=97 Score=24.53 Aligned_cols=98 Identities=10% Similarity=0.128 Sum_probs=56.1
Q ss_pred EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCCCC-
Q 032598 12 VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDKPEA- 89 (137)
Q Consensus 12 ~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~- 89 (137)
+.++..++++.++|.. ..+ +-...+.||.+++++|..-....+.. .. -.++.. -++| ++-|+++.|+-..
T Consensus 108 vsgK~RRiTflEcp~D--l~~-miDvaKIaDLVlLlIdgnfGfEMETm-EF-Lnil~~---HGmPrvlgV~ThlDlfk~~ 179 (1077)
T COG5192 108 VSGKTRRITFLECPSD--LHQ-MIDVAKIADLVLLLIDGNFGFEMETM-EF-LNILIS---HGMPRVLGVVTHLDLFKNP 179 (1077)
T ss_pred eecceeEEEEEeChHH--HHH-HHhHHHhhheeEEEeccccCceehHH-HH-HHHHhh---cCCCceEEEEeecccccCh
Confidence 5567789999999833 222 33456779999999999875443332 12 223332 2344 4557999998654
Q ss_pred CCHHHHHHHhCCCCCC--CCceeEEEeecc
Q 032598 90 LSKEDLMEQMGLKSIT--DREVCCYMISCK 117 (137)
Q Consensus 90 ~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~ 117 (137)
.....+...++...+. ..+.++|..|..
T Consensus 180 stLr~~KKrlkhRfWtEiyqGaKlFylsgV 209 (1077)
T COG5192 180 STLRSIKKRLKHRFWTEIYQGAKLFYLSGV 209 (1077)
T ss_pred HHHHHHHHHHhhhHHHHHcCCceEEEeccc
Confidence 2333444444322221 224456666653
No 454
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=56.08 E-value=47 Score=23.06 Aligned_cols=46 Identities=13% Similarity=0.179 Sum_probs=24.4
Q ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC
Q 032598 41 VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS 91 (137)
Q Consensus 41 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 91 (137)
.+++++.+.++- +++.-++. ++++... .-..++-|+-|.|-..-+.
T Consensus 156 VHcclyFi~ptG-hsLrplDi---eflkrLt-~vvNvvPVIakaDtlTleE 201 (336)
T KOG1547|consen 156 VHCCLYFIPPTG-HSLRPLDI---EFLKRLT-EVVNVVPVIAKADTLTLEE 201 (336)
T ss_pred EEEEEEEeCCCC-CccCcccH---HHHHHHh-hhheeeeeEeecccccHHH
Confidence 678888887663 33332221 1111110 2245777889999765433
No 455
>PRK11519 tyrosine kinase; Provisional
Probab=56.01 E-value=36 Score=27.11 Aligned_cols=67 Identities=24% Similarity=0.175 Sum_probs=40.9
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE-EEeeCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL-VLGNKIDKP 87 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~ 87 (137)
+.+.+.++|||....... .....+.+|++++|+..... +...+..-+..+.+ .+.+++ +|.|+.+..
T Consensus 634 ~~yD~ViiDtpP~~~v~D-a~~l~~~~d~~l~Vvr~~~t-~~~~~~~~~~~l~~----~~~~~~G~VlN~v~~~ 701 (719)
T PRK11519 634 KNYDLVLIDTPPILAVTD-AAIVGRHVGTTLMVARYAVN-TLKEVETSLSRFEQ----NGIPVKGVILNSIFRR 701 (719)
T ss_pred hcCCEEEEeCCCcccchH-HHHHHHHCCeEEEEEeCCCC-CHHHHHHHHHHHHh----CCCCeEEEEEeCCccC
Confidence 357789999987654321 12345779999999977543 33444433333322 345554 889999643
No 456
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=54.53 E-value=45 Score=24.43 Aligned_cols=71 Identities=13% Similarity=0.009 Sum_probs=39.4
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHH---HHHHHhcCCC--CCCCcEEEEeeCCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS---ELHDLLSKPS--LNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~---~~~~~~~~~~--~~~~p~ivv~nK~D~~~ 88 (137)
+.+.+.++|||+..... ....+.-||.+|+.+.++. .++..... .+..+..... ..+..+-++.|+.|...
T Consensus 233 ~~YD~IiIDtpP~l~~~--t~nal~AaD~viiP~~~~~-~s~~g~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~~~ 308 (388)
T PRK13705 233 HDYDVIVIDSAPNLGIG--TINVVCAADVLIVPTPAEL-FDYTSALQFFDMLRDLLKNVDLKGFEPDVRILLTKYSNSN 308 (388)
T ss_pred ccCCEEEEECCCchhHH--HHHHHHHcCEEEEecCCcH-HHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEEEecCCC
Confidence 35789999998875443 3334557899888886642 23333332 2233222100 01223446899988653
No 457
>KOG4530 consensus Predicted flavoprotein [General function prediction only]
Probab=53.92 E-value=57 Score=20.94 Aligned_cols=76 Identities=17% Similarity=0.235 Sum_probs=41.6
Q ss_pred ceeeEEEeCCEEEEEEecCCcc---------ccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQP---------RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~---------~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
+.+..++-....+..-|.++.. ....-|...+..+|+++||----+..-..-+..-+.-+ ...+.++|.
T Consensus 44 l~ie~vDls~lPL~~~D~e~~pi~~vd~y~~~~t~aw~~ki~~aD~ivFvtPqYN~gypA~LKNAlD~l--yheW~gKPa 121 (199)
T KOG4530|consen 44 LQIEYVDLSPLPLINTDLEVNPIKSVDEYYPPVTEAWRQKILEADSIVFVTPQYNFGYPAPLKNALDWL--YHEWAGKPA 121 (199)
T ss_pred CceEEEeccCCccccCCcccCccccccccCcHHHHHHHHHHhhcceEEEecccccCCCchHHHHHHHHh--hhhhcCCce
Confidence 4445555555555555555432 12345666788899999997655532222122211111 223578898
Q ss_pred EEEeeCC
Q 032598 78 LVLGNKI 84 (137)
Q Consensus 78 ivv~nK~ 84 (137)
++|..=-
T Consensus 122 livSyGG 128 (199)
T KOG4530|consen 122 LIVSYGG 128 (199)
T ss_pred EEEEecC
Confidence 8886544
No 458
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=53.37 E-value=31 Score=23.58 Aligned_cols=70 Identities=11% Similarity=0.060 Sum_probs=38.6
Q ss_pred CCEEEEEEecCCccccHH-hHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE-EEeeCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRS-MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL-VLGNKIDK 86 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~-~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~ 86 (137)
+++.+.++||+|...... .....+..||.+++++.+. +.++.........+.... ..+.++. ++.|+.+.
T Consensus 115 ~~yD~vlID~~~~~~~~~~~~~~al~aad~vlip~~p~-~~sl~~~~~~~k~l~~~~-~~~l~~~GiV~n~~~~ 186 (273)
T PRK13232 115 DDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGE-LMAIYAANNICKGLAKFA-KGGARLGGIICNSRNV 186 (273)
T ss_pred ccCCEEEEecCCCeeECCEeccccccccceEEEecCch-HHHHHHHHHHHHHHHHHh-CCCCceeEEEEeCCCC
Confidence 457889999987642111 1111134689988888764 345554444433333221 1445553 77887753
No 459
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=53.15 E-value=22 Score=24.92 Aligned_cols=48 Identities=19% Similarity=0.065 Sum_probs=32.9
Q ss_pred EEeCCEEEEEEecCCccccHHh-------HHHHhccCCEEEEEEeCCCCCChHHH
Q 032598 12 VTKGNVTIKLWDLGGQPRFRSM-------WERYCRAVSAIVYVVDAADYDNLPVS 59 (137)
Q Consensus 12 ~~~~~~~~~~~Dt~g~~~~~~~-------~~~~~~~~~~~i~v~d~~~~~~~~~~ 59 (137)
+.+++-++++.|.||.-....- .-...+.|+.+++|+|...+-+...+
T Consensus 101 ~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnli~~vld~~kp~~hk~~ 155 (358)
T KOG1487|consen 101 IRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNLIFIVLDVLKPLSHKKI 155 (358)
T ss_pred EeccccceeeecCcchhcccccCCCCccEEEEEeecccEEEEEeeccCcccHHHH
Confidence 3467788999999996432211 11125679999999999988665543
No 460
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=53.00 E-value=37 Score=18.56 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=22.2
Q ss_pred ceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 108 EVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 108 ~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
.++++.+-+-.++++++.++.|.+.+.+.
T Consensus 13 ei~yl~iv~~~~~d~d~Al~eM~e~A~~l 41 (74)
T TIGR03884 13 QLYYLGIVSTESDNVDEIVENLREKVKAK 41 (74)
T ss_pred EEEEEEEEEEecCCHHHHHHHHHHHHHHc
Confidence 34566665567789999999999988753
No 461
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=51.12 E-value=1e+02 Score=23.05 Aligned_cols=68 Identities=10% Similarity=0.013 Sum_probs=37.8
Q ss_pred CCEEEEEEecCCccccHHhHHHH---hc---cCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERY---CR---AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~---~~---~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 88 (137)
.+..+.++||+|........... +. ...-.++|++++.. .+.+......+.. . -+-=++.+|.|-..
T Consensus 268 ~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~~----~-~~~~~I~TKlDEt~ 340 (420)
T PRK14721 268 RGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAYQG----H-GIHGCIITKVDEAA 340 (420)
T ss_pred cCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHhcC----C-CCCEEEEEeeeCCC
Confidence 35678999999976543322111 21 24467899998752 3333333333321 1 12356789999754
Q ss_pred C
Q 032598 89 A 89 (137)
Q Consensus 89 ~ 89 (137)
.
T Consensus 341 ~ 341 (420)
T PRK14721 341 S 341 (420)
T ss_pred C
Confidence 3
No 462
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=50.58 E-value=40 Score=18.16 Aligned_cols=36 Identities=11% Similarity=-0.034 Sum_probs=25.0
Q ss_pred EEEEEecCCccccHHh-HHHHhccCCEEEEEEeCCCC
Q 032598 18 TIKLWDLGGQPRFRSM-WERYCRAVSAIVYVVDAADY 53 (137)
Q Consensus 18 ~~~~~Dt~g~~~~~~~-~~~~~~~~~~~i~v~d~~~~ 53 (137)
.+.+.|+++....... .......++.++++++....
T Consensus 35 d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~ 71 (99)
T cd01983 35 DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEAL 71 (99)
T ss_pred CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchh
Confidence 6788999876543321 24456779999999987653
No 463
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=50.13 E-value=55 Score=24.00 Aligned_cols=70 Identities=19% Similarity=-0.039 Sum_probs=39.4
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHH---HHHHHHHHhcCC--CCCCCcEEEEeeCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPV---SRSELHDLLSKP--SLNGIPLLVLGNKIDKP 87 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~---~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~ 87 (137)
+++.+.++|||+...+. ....+.-||.+++.+.++- .++.. ....+..+.... ...+..+-++.|+.|..
T Consensus 233 ~~YD~IlID~pPslg~l--t~nAL~AAd~vliPv~~~~-~s~~s~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~~ 307 (387)
T PHA02519 233 DNYDIIVIDSAPNLGTG--TINVVCAADVIVVATPAEL-FDYVSVLQFFTMLLDLLATVDLGGFEPVVRLLLTKYSLT 307 (387)
T ss_pred ccCCEEEEECCCCccHH--HHHHHHHhCEEEEecCCcH-HHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEeeECCC
Confidence 45789999999887653 3345666798888876542 22322 222222222111 01123344788999865
No 464
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=50.11 E-value=70 Score=20.87 Aligned_cols=47 Identities=23% Similarity=0.205 Sum_probs=27.1
Q ss_pred EEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHH
Q 032598 18 TIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDL 66 (137)
Q Consensus 18 ~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~ 66 (137)
.+.++|+|...... ........+|.+++|+..... +...+.+.++.+
T Consensus 150 D~IiiD~pp~~~~~-~~~~l~~~aD~viiV~~~~~~-~~~~~~~~~~~l 196 (207)
T TIGR03018 150 RIIIIDTPPLLVFS-EARALARLVGQIVLVVEEGRT-TQEAVKEALSAL 196 (207)
T ss_pred CEEEEECCCCcchh-HHHHHHHhCCEEEEEEECCCC-CHHHHHHHHHHh
Confidence 57888887654322 223345568888888877653 444444444444
No 465
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=49.34 E-value=77 Score=21.14 Aligned_cols=39 Identities=13% Similarity=-0.009 Sum_probs=25.2
Q ss_pred CCEEEEEEecCCccccHH------hHHHHhcc--CCEEEEEEeCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRS------MWERYCRA--VSAIVYVVDAADY 53 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~------~~~~~~~~--~~~~i~v~d~~~~ 53 (137)
++..+.++||+|...... .....+.. ++.+|+..+....
T Consensus 58 ~~~~v~~lDteG~~~~~~~~~~~~~~~~~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 58 KEHAVLLLDTEGTDGRERGEFEDDARLFALATLLSSVLIYNSWETIL 104 (224)
T ss_pred CcceEEEEecCCcCccccCchhhhhHHHHHHHHHhCEEEEeccCccc
Confidence 468999999999743321 12222333 8888888887654
No 466
>PRK10037 cell division protein; Provisional
Probab=49.23 E-value=32 Score=23.22 Aligned_cols=35 Identities=14% Similarity=0.146 Sum_probs=27.9
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAA 51 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~ 51 (137)
+.+.+.++|||+... ......+..||.+++++.++
T Consensus 116 ~~yD~iiIDtpp~~~--~~~~~al~aaD~vlvpv~~~ 150 (250)
T PRK10037 116 GRYQWILLDLPRGAS--PLTRQLLSLCDHSLAIVNVD 150 (250)
T ss_pred CCCCEEEEECCCCcc--HHHHHHHHhCCEEEEEcCcC
Confidence 568899999988753 34556788899999999774
No 467
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=49.08 E-value=93 Score=22.98 Aligned_cols=71 Identities=11% Similarity=-0.029 Sum_probs=40.8
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHH-------HHhcCCCCCCCcE-EEEeeCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELH-------DLLSKPSLNGIPL-LVLGNKIDK 86 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~-------~~~~~~~~~~~p~-ivv~nK~D~ 86 (137)
+.+.+.++|||+..... ....+.-||.+|+.+.++- .++..+...+. .+.......+... -++.|+.|.
T Consensus 250 ~~yD~IiIDtpP~l~~~--t~~al~aAd~viiPv~p~~-~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~il~t~~~~ 326 (405)
T PRK13869 250 DDYDVVVIDCPPQLGFL--TLSGLCAATSMVITVHPQM-LDIASMSQFLLMTRDLLGVVKEAGGNLQYDFIRYLLTRYEP 326 (405)
T ss_pred ccCCEEEEECCCchhHH--HHHHHHHcCEEEEecCCcH-HHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeEEEEEeECC
Confidence 36789999999886543 3445667999999886643 23333333332 1211111112223 378999986
Q ss_pred CC
Q 032598 87 PE 88 (137)
Q Consensus 87 ~~ 88 (137)
..
T Consensus 327 ~~ 328 (405)
T PRK13869 327 QD 328 (405)
T ss_pred CC
Confidence 43
No 468
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=48.09 E-value=88 Score=21.46 Aligned_cols=48 Identities=8% Similarity=0.025 Sum_probs=34.7
Q ss_pred HHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCC
Q 032598 36 RYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 84 (137)
Q Consensus 36 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 84 (137)
.....+|.++.+|.+.+....+++.+-++-+++. ..++.|+.++-|-.
T Consensus 150 ~aAA~adfVi~~YNP~s~~R~~~~~~a~eil~~~-r~~~tpVgivrnag 197 (249)
T COG1010 150 RAAAEADFVIALYNPISKRRPEQLGRAFEILREH-RSPDTPVGIVRNAG 197 (249)
T ss_pred HHHhhCCEEEEEECCccccchHHHHHHHHHHHHh-cCCCCcEEEEecCC
Confidence 3456799999999988876666666665555554 33689999887766
No 469
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=46.81 E-value=1.1e+02 Score=23.36 Aligned_cols=79 Identities=16% Similarity=0.116 Sum_probs=39.8
Q ss_pred CEEEEEEecCCccccHHhHHH---Hhcc---CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 032598 16 NVTIKLWDLGGQPRFRSMWER---YCRA---VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 89 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~---~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 89 (137)
+..+.++||+|.......... .+.. ..-.++|+|.+.. ...+......+.. .+ ..-++.||.|-...
T Consensus 334 d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~--~~~l~~i~~~f~~----~~-~~g~IlTKlDet~~ 406 (484)
T PRK06995 334 NKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH--GDTLNEVVQAYRG----PG-LAGCILTKLDEAAS 406 (484)
T ss_pred CCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc--HHHHHHHHHHhcc----CC-CCEEEEeCCCCccc
Confidence 457899999996544322111 2222 2236788888653 2333222222211 22 33567899997543
Q ss_pred C-CHHHHHHHhCC
Q 032598 90 L-SKEDLMEQMGL 101 (137)
Q Consensus 90 ~-~~~~~~~~~~~ 101 (137)
. ..-.+....+.
T Consensus 407 ~G~~l~i~~~~~l 419 (484)
T PRK06995 407 LGGALDVVIRYKL 419 (484)
T ss_pred chHHHHHHHHHCC
Confidence 2 22344444443
No 470
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=46.44 E-value=54 Score=21.30 Aligned_cols=65 Identities=12% Similarity=0.198 Sum_probs=32.3
Q ss_pred EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcC--CCCCCCcEEEEe
Q 032598 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSK--PSLNGIPLLVLG 81 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~p~ivv~ 81 (137)
..+.=.-.+|.-........++...++-++++|+.--.+.+........+.+. ...++.|++++-
T Consensus 34 ~~~iNLGfsG~~~le~~~a~~ia~~~a~~~~ld~~~N~~~~~~~~~~~~fv~~iR~~hP~tPIllv~ 100 (178)
T PF14606_consen 34 LDVINLGFSGNGKLEPEVADLIAEIDADLIVLDCGPNMSPEEFRERLDGFVKTIREAHPDTPILLVS 100 (178)
T ss_dssp -EEEEEE-TCCCS--HHHHHHHHHS--SEEEEEESHHCCTTTHHHHHHHHHHHHHTT-SSS-EEEEE
T ss_pred CCeEeeeecCccccCHHHHHHHhcCCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 33444445777777788888888877777777754212222233333333322 235779988775
No 471
>PRK13660 hypothetical protein; Provisional
Probab=46.19 E-value=82 Score=20.54 Aligned_cols=48 Identities=15% Similarity=0.125 Sum_probs=24.6
Q ss_pred cHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 30 FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 30 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
++....-.+..+|+++.++|.....+.... +....+.....+.|+..+
T Consensus 119 ~~~rn~fmv~~sd~~i~~YD~e~~Ggt~y~---~~~A~k~~~~~~y~i~~I 166 (182)
T PRK13660 119 FRQYNQFMLEHTDGALLVYDEENEGSPKYF---YEAAKKKQEKEDYPLDLI 166 (182)
T ss_pred HHHHHHHHHHccCeEEEEEcCCCCCChHHH---HHHHHHhhhccCceEEEe
Confidence 334444446778888888887655443322 222222222245666554
No 472
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=45.49 E-value=32 Score=23.59 Aligned_cols=50 Identities=6% Similarity=0.043 Sum_probs=29.7
Q ss_pred CEEEEEEecCCccccHHh-HHHHhccCCEEEEEEeCCCCCChHHHHHHHHHH
Q 032598 16 NVTIKLWDLGGQPRFRSM-WERYCRAVSAIVYVVDAADYDNLPVSRSELHDL 66 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~-~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~ 66 (137)
++.+.++||+|....... ....+.-||.+++++.++. .++......+..+
T Consensus 116 ~yD~viID~~~~~~~~~l~~~~~~~aAD~vlIp~~p~~-~si~~~~~ll~~i 166 (279)
T PRK13230 116 GPDVVIYDILGDVVCGGFAMPLQKGLADDVYIVTTCDP-MAIYAANNICKGI 166 (279)
T ss_pred CCCEEEEecCCccccCCccccccccccceEEEeccchH-HHHHHHHHHHHHH
Confidence 578899999875322111 1222345899999988753 4555555444433
No 473
>PRK13695 putative NTPase; Provisional
Probab=45.45 E-value=76 Score=19.95 Aligned_cols=77 Identities=10% Similarity=0.176 Sum_probs=40.8
Q ss_pred hccCCEEEEEEe---CCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEe
Q 032598 38 CRAVSAIVYVVD---AADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMI 114 (137)
Q Consensus 38 ~~~~~~~i~v~d---~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (137)
++.++. +++| ..+..+ ......+..+. ..+.|++++.||.... ...+.+... +...++++
T Consensus 94 l~~~~~--lllDE~~~~e~~~-~~~~~~l~~~~----~~~~~~i~v~h~~~~~------~~~~~i~~~----~~~~i~~~ 156 (174)
T PRK13695 94 LEEADV--IIIDEIGKMELKS-PKFVKAVEEVL----DSEKPVIATLHRRSVH------PFVQEIKSR----PGGRVYEL 156 (174)
T ss_pred cCCCCE--EEEECCCcchhhh-HHHHHHHHHHH----hCCCeEEEEECchhhH------HHHHHHhcc----CCcEEEEE
Confidence 445665 6888 333222 11223333333 2568999999985322 222222211 12245555
Q ss_pred ecccCCChHHHHHHHHHhhh
Q 032598 115 SCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 115 Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+.+|-+++.+.+.+.++
T Consensus 157 ---~~~~r~~~~~~~~~~~~ 173 (174)
T PRK13695 157 ---TPENRDSLPFEILNRLK 173 (174)
T ss_pred ---cchhhhhHHHHHHHHHh
Confidence 56677888888887664
No 474
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=45.13 E-value=68 Score=19.32 Aligned_cols=39 Identities=15% Similarity=0.220 Sum_probs=29.3
Q ss_pred HHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 97 EQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+.|........++.+..+|+-.+..+.+.++.+.+.+++
T Consensus 84 ~~L~~~Gi~~eRv~~~~~~~~~~~~fa~~~~~f~~~i~~ 122 (124)
T PF02662_consen 84 KLLEELGIEPERVRLYWISAPEGKRFAEIVNEFTERIKE 122 (124)
T ss_pred HHHHHcCCChhHeEEEEeCcccHHHHHHHHHHHHHHHHH
Confidence 333333344567789999999999999999999888765
No 475
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=44.09 E-value=16 Score=26.40 Aligned_cols=36 Identities=25% Similarity=0.332 Sum_probs=25.9
Q ss_pred EEEEEEecCCccccH----HhHHH---HhccCCEEEEEEeCCC
Q 032598 17 VTIKLWDLGGQPRFR----SMWER---YCRAVSAIVYVVDAAD 52 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~----~~~~~---~~~~~~~~i~v~d~~~ 52 (137)
..++++|++|.-+.. .+-.. .++.+|+++-|+++..
T Consensus 84 a~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 84 AFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred eeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 568999998864433 23333 3678999999998764
No 476
>PF07680 DoxA: TQO small subunit DoxA; InterPro: IPR011636 Thiosulphate:quinone oxidoreductase (TQO) catalyses one of the early steps in elemental sulphur oxidation. A novel TQO enzyme was purified from the thermo-acidophilic archaeon Acidianus ambivalens and shown to consist of a large subunit (DoxD) and a smaller subunit (DoxA). The DoxD- and DoxA-like two subunits are fused together in a single polypeptide in Q8AAF0 from SWISSPROT.
Probab=42.20 E-value=43 Score=20.65 Aligned_cols=31 Identities=13% Similarity=0.380 Sum_probs=24.8
Q ss_pred CCcccceeeEEEeCCEEEEEEecCCccccHH
Q 032598 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS 32 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~ 32 (137)
.|.+++....+..+.+.|+++++.|...+-+
T Consensus 16 ~P~~eis~~~~~~~~L~f~vyr~~G~D~Ygs 46 (133)
T PF07680_consen 16 KPKLEISDALIENGTLSFHVYRVEGPDVYGS 46 (133)
T ss_pred CccEEEeeeEEeCCeEEEEEEEcCCCccCCc
Confidence 4677777777888889999999999876643
No 477
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=41.74 E-value=1.1e+02 Score=20.95 Aligned_cols=62 Identities=24% Similarity=0.400 Sum_probs=36.8
Q ss_pred CCEEEEEEecCCccccHHhHHHHh-ccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYC-RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 87 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~-~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 87 (137)
.++.+.+..+.+............ +++||+|+. .. ... .+.+.. +.+ .++|++++....+..
T Consensus 30 ~Gy~l~l~~t~~~~~~e~~i~~l~~~~vDGiI~~-s~-~~~-~~~l~~----~~~----~~iPvV~~~~~~~~~ 92 (279)
T PF00532_consen 30 HGYQLLLCNTGDDEEKEEYIELLLQRRVDGIILA-SS-END-DEELRR----LIK----SGIPVVLIDRYIDNP 92 (279)
T ss_dssp TTCEEEEEEETTTHHHHHHHHHHHHTTSSEEEEE-SS-SCT-CHHHHH----HHH----TTSEEEEESS-SCTT
T ss_pred cCCEEEEecCCCchHHHHHHHHHHhcCCCEEEEe-cc-cCC-hHHHHH----HHH----cCCCEEEEEeccCCc
Confidence 578888888877654444444333 569999887 32 222 222222 222 369988888876655
No 478
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=41.07 E-value=93 Score=19.68 Aligned_cols=50 Identities=10% Similarity=-0.019 Sum_probs=30.7
Q ss_pred hHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeC
Q 032598 33 MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNK 83 (137)
Q Consensus 33 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 83 (137)
.+...+..||++|++.-.-...-.-.+..++..+. .....++|++++.+-
T Consensus 61 ~~~~~i~~AD~iIi~tP~Y~~s~~~~LKn~lD~~~-~~~l~~K~~~~v~~~ 110 (174)
T TIGR03566 61 RILQAIESADLLVVGSPVYRGSYTGLFKHLFDLVD-PNALIGKPVLLAATG 110 (174)
T ss_pred HHHHHHHHCCEEEEECCcCcCcCcHHHHHHHHhcC-HhHhCCCEEEEEEec
Confidence 34455788999999887665433333444444332 123468999888774
No 479
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=39.70 E-value=1e+02 Score=20.93 Aligned_cols=52 Identities=10% Similarity=0.119 Sum_probs=31.6
Q ss_pred CCEEEEEEecCCccccHHhH-HHHhccCCEEEEEEeCCCCCChHHHHHHHHHHh
Q 032598 15 GNVTIKLWDLGGQPRFRSMW-ERYCRAVSAIVYVVDAADYDNLPVSRSELHDLL 67 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~-~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~ 67 (137)
+++.+.++||+|........ ......+|.+++++.++ +.++......+..+.
T Consensus 112 ~~yD~ViIDt~~~~~~~~~~~~~~~~aaD~vlip~~p~-~~si~~~~~~~~~i~ 164 (264)
T PRK13231 112 EDIDVVIYDVLGDVVCGGFSVPLREDYADEVYIVTSGE-YMSLYAANNIARGIK 164 (264)
T ss_pred CCCCEEEEecCCCceEccccccccccccceeEEEecCc-hhHHHHHHHHHHHHH
Confidence 35789999998754322211 11125789999998774 356666666555443
No 480
>PRK12739 elongation factor G; Reviewed
Probab=37.95 E-value=38 Score=26.88 Aligned_cols=26 Identities=12% Similarity=0.009 Sum_probs=22.4
Q ss_pred ceeEEEeecccCCChHHHHHHHHHhh
Q 032598 108 EVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 108 ~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
-++++..||.++.|++.+++.|++.+
T Consensus 252 ~~Pv~~gSa~~~~Gv~~LLd~I~~~l 277 (691)
T PRK12739 252 FFPVLCGSAFKNKGVQPLLDAVVDYL 277 (691)
T ss_pred EEEEEeccccCCccHHHHHHHHHHHC
Confidence 35678889999999999999998765
No 481
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=37.03 E-value=1.2e+02 Score=20.25 Aligned_cols=44 Identities=16% Similarity=0.086 Sum_probs=24.5
Q ss_pred hccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCC
Q 032598 38 CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 84 (137)
Q Consensus 38 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 84 (137)
+...|.+++.-|.++....+.....+..+... ....+++.+|+=
T Consensus 39 ~~~~D~viiaGDl~~~~~~~~~~~~l~~l~~l---~~~v~~V~GNHD 82 (232)
T cd07393 39 VAPEDIVLIPGDISWAMKLEEAKLDLAWIDAL---PGTKVLLKGNHD 82 (232)
T ss_pred CCCCCEEEEcCCCccCCChHHHHHHHHHHHhC---CCCeEEEeCCcc
Confidence 34789999999998754444333333323221 222345557763
No 482
>PF15162 DUF4580: Domain of unknown function (DUF4580)
Probab=36.26 E-value=1.2e+02 Score=19.39 Aligned_cols=50 Identities=14% Similarity=0.046 Sum_probs=32.2
Q ss_pred CCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhcc-CCEEEEEEeCC
Q 032598 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRA-VSAIVYVVDAA 51 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~-~~~~i~v~d~~ 51 (137)
+.|++.+...+.-.++-|-+.|.+....+-+.+..+... .++++++..+.
T Consensus 34 S~sve~~svIFpLSGvAFLL~d~~~~~~~l~ki~kF~~ihrNsflvL~aal 84 (162)
T PF15162_consen 34 SDSVEPGSVIFPLSGVAFLLMDAQECFMFLAKIEKFIDIHRNSFLVLSAAL 84 (162)
T ss_pred cccccCCeEEEEcccceeeEeccHHHhhHHHHHHHHHhccCCceEEeehhh
Confidence 445666666677778888888887766555666666654 45555555443
No 483
>PF07764 Omega_Repress: Omega Transcriptional Repressor; InterPro: IPR011686 The omega transcriptional repressor regulates expression of genes involved in copy number control and stable maintenance of plasmids. The omega protein belongs to the structural superfamily of MetJ/Arc repressors featuring a ribbon-helix-helix DNA-binding motif with the beta-ribbon located in and recognising the major groove of operator DNA [].; PDB: 2BNW_D 1IRQ_A 2CAX_B 2BNZ_A.
Probab=34.31 E-value=38 Score=17.74 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=14.2
Q ss_pred ecccCCChHHHHHHHHHhh
Q 032598 115 SCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 115 Sa~~~~~v~~~~~~i~~~~ 133 (137)
||++|-|++++.+--.+..
T Consensus 44 tAknGgNvKEvme~~lr~~ 62 (71)
T PF07764_consen 44 TAKNGGNVKEVMEQALREK 62 (71)
T ss_dssp HHHSSS-HHHHHHHHHHHH
T ss_pred ecccCCCHHHHHHHHHHHH
Confidence 8899999999887665543
No 484
>PF09885 DUF2112: Uncharacterized protein conserved in archaea (DUF2112); InterPro: IPR012356 The exact function of this protein is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=34.25 E-value=84 Score=19.44 Aligned_cols=37 Identities=14% Similarity=0.050 Sum_probs=27.0
Q ss_pred CCEEEEEEecCC-ccccHHhHHHHhccCCEEEEEEeCC
Q 032598 15 GNVTIKLWDLGG-QPRFRSMWERYCRAVSAIVYVVDAA 51 (137)
Q Consensus 15 ~~~~~~~~Dt~g-~~~~~~~~~~~~~~~~~~i~v~d~~ 51 (137)
.+.++--.++|. ....-++..-.+..|++.|+|-+..
T Consensus 54 kGlkYAAvEvPSGvRGRMsl~gplIeeAeAaIIv~~~p 91 (143)
T PF09885_consen 54 KGLKYAAVEVPSGVRGRMSLIGPLIEEAEAAIIVEDAP 91 (143)
T ss_pred hccceeEeecCCcccchhhhhhhhHhhhceeeEecCCC
Confidence 356666777754 4445577778889999999998764
No 485
>PF10381 Autophagy_Cterm: Autophagocytosis associated protein C-terminal; InterPro: IPR019461 Autophagocytosis is a starvation-induced process responsible for transport of cytoplasmic proteins to the vacuole. The small C-terminal domain is likely to be a distinct binding region for the stability of the autophagosome complex []. It carries a highly characteristic conserved FLKF sequence motif. ; PDB: 2DYT_A.
Probab=33.91 E-value=9.5 Score=16.10 Aligned_cols=9 Identities=33% Similarity=0.929 Sum_probs=4.5
Q ss_pred CCCccccee
Q 032598 1 MIPTVGFNM 9 (137)
Q Consensus 1 ~~pt~~~~~ 9 (137)
++||+++.+
T Consensus 15 ViPtIeyD~ 23 (25)
T PF10381_consen 15 VIPTIEYDY 23 (25)
T ss_dssp HSTTB--TT
T ss_pred cCCceeeec
Confidence 478887543
No 486
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=33.84 E-value=1.7e+02 Score=20.56 Aligned_cols=83 Identities=11% Similarity=-0.007 Sum_probs=42.7
Q ss_pred CCEEEEEEecCCccc-cHHhHHHHhccCCEEEEEEeCCCCCChHH---HHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC
Q 032598 15 GNVTIKLWDLGGQPR-FRSMWERYCRAVSAIVYVVDAADYDNLPV---SRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL 90 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~~~~~---~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 90 (137)
.++.+.++|++|... ...........||.++.+...+- .++.. +.+.++.+.+. ...-.+.-++.|+.+...
T Consensus 121 ~~yD~IliD~~~~~~~~g~~~~~a~~~Ad~viVvt~~e~-~sl~~a~~l~k~v~~~~~~-~~~v~i~GVV~N~~~~~~-- 196 (296)
T TIGR02016 121 WDFDFVLMDFLGDVVCGGFATPLARSLAEEVIVIGSNDR-QSLYVANNICNAVEYFRKL-GGRVGLLGLVVNRDDGSG-- 196 (296)
T ss_pred ccCCEEEEecCCCccccccccchhhhhCCeEEEEecchH-HHHHHHHHHHHHHHHHHHc-CCCCcceEEEEeCCCCcc--
Confidence 368899999977531 01101112345888888876542 33433 33333333221 111224568899997632
Q ss_pred CHHHHHHHhCC
Q 032598 91 SKEDLMEQMGL 101 (137)
Q Consensus 91 ~~~~~~~~~~~ 101 (137)
...++.+.++.
T Consensus 197 ~~~~~~~~~~i 207 (296)
T TIGR02016 197 EAQAFAREVGI 207 (296)
T ss_pred HHHHHHHHcCC
Confidence 33455555543
No 487
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=33.78 E-value=1.3e+02 Score=19.07 Aligned_cols=44 Identities=9% Similarity=-0.016 Sum_probs=28.9
Q ss_pred ccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCC
Q 032598 39 RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 84 (137)
Q Consensus 39 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 84 (137)
+.-+..|.-...+.+.++++--.|+.+..-.. +.-.+++++||-
T Consensus 82 ~~y~vYivtaamdhp~s~~dK~eWl~E~FPFi--~~qn~vfCgnKn 125 (180)
T COG4502 82 SIYNVYIVTAAMDHPKSCEDKGEWLKEKFPFI--SYQNIVFCGNKN 125 (180)
T ss_pred hhheEEEEEeccCCchhHHHHHHHHHHHCCCC--ChhhEEEecCCC
Confidence 33455544444456889988888988776554 444578888874
No 488
>PF11524 SeleniumBinding: Selenium binding protein; InterPro: IPR021603 Selenium is an important nutrient which needs to be regulated since lack of the nutrient leads to cell abnormalities and high concentrations are toxic.SeBP regulates the level of free selenium in the cell by sequestering the nutrient during transport. SeBP acts as a pentamer and delivers the selenium to the selenophosphate synthetase enzyme []. Each subunit is composed of an alpha helix on top of a four stranded twisted ss sheet, stabilised by hydrogen bonds []. members of this entry are restricted to the archaeal Methanococcales.; PDB: 2JZ7_D.
Probab=33.77 E-value=77 Score=17.45 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=18.5
Q ss_pred eEEE-eecccCCChHHHHHHHHHhhhhc
Q 032598 110 CCYM-ISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 110 ~~~~-~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
.+.. +|+.. +|++++++.|-+.++++
T Consensus 21 y~~gIvS~~~-envd~li~~lee~vk~k 47 (81)
T PF11524_consen 21 YYLGIVSEAS-ENVDELIKKLEEKVKAK 47 (81)
T ss_dssp EEEEEEEEBS-SSHHHHHHHHHHHHHHT
T ss_pred EeehhHHHHH-hhHHHHHHHHHHHHHhC
Confidence 3444 45544 39999999999988764
No 489
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=31.40 E-value=1.1e+02 Score=22.36 Aligned_cols=36 Identities=14% Similarity=0.086 Sum_probs=26.2
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD 52 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 52 (137)
+.+.+.++|||+.... .....+..||.+|+++.++.
T Consensus 233 ~~yD~IiiD~pp~~~~--~~~~al~aad~viipv~p~~ 268 (387)
T TIGR03453 233 DDYDVVVIDCPPQLGF--LTLSALCAATGVLITVHPQM 268 (387)
T ss_pred hcCCEEEEeCCccHhH--HHHHHHHHcCeeEEcCCCch
Confidence 3578999999987544 33445667899998887653
No 490
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=31.17 E-value=1.1e+02 Score=17.69 Aligned_cols=45 Identities=18% Similarity=0.137 Sum_probs=27.0
Q ss_pred HHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 032598 36 RYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 86 (137)
Q Consensus 36 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 86 (137)
..++.||++|..++...+++= ..-.+-... ..++|++++.+....
T Consensus 57 ~~i~~~D~via~l~~~~~d~G--t~~ElG~A~----algkpv~~~~~d~~~ 101 (113)
T PF05014_consen 57 EGIRECDIVIANLDGFRPDSG--TAFELGYAY----ALGKPVILLTEDDRP 101 (113)
T ss_dssp HHHHHSSEEEEEECSSS--HH--HHHHHHHHH----HTTSEEEEEECCCCT
T ss_pred HHHHHCCEEEEECCCCCCCCc--HHHHHHHHH----HCCCEEEEEEcCCcc
Confidence 457889999999988543221 111111111 257899998887765
No 491
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=31.13 E-value=1.8e+02 Score=20.93 Aligned_cols=80 Identities=16% Similarity=0.079 Sum_probs=38.8
Q ss_pred CEEEEEEecCCccc---cHHhHHHHhccCCEEEEEEeCCCCCChHH---HHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 032598 16 NVTIKLWDLGGQPR---FRSMWERYCRAVSAIVYVVDAADYDNLPV---SRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 89 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~---~~~~~~~~~~~~~~~i~v~d~~~~~~~~~---~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 89 (137)
.+.+.++|++|... +.. .....-++.++.|. ..+..++.. +.+.+..+.+. .....-.-+|.||.|..+
T Consensus 147 ~~DyVliD~~gdv~~ggf~l--~i~~~~ad~VIVVt-~pe~~si~~A~~v~kai~~~~~l-g~~~~i~GlViNr~d~~~- 221 (329)
T cd02033 147 DFDYVLLDFLGDVVCGGFGL--PIARDMAQKVIVVG-SNDLQSLYVANNVCNAVEYFRKL-GGNVGVAGMVINKDDGTG- 221 (329)
T ss_pred cCCEEEEecCCcceeccccc--hhhhcCCceEEEeC-CchHHHHHHHHHHHHHHHHHHHh-CCCCCceEEEEeCcCCcc-
Confidence 46788999987643 211 11112255554444 333333422 23333333221 111122678899998643
Q ss_pred CCHHHHHHHhCC
Q 032598 90 LSKEDLMEQMGL 101 (137)
Q Consensus 90 ~~~~~~~~~~~~ 101 (137)
..+.+.+.++.
T Consensus 222 -~ie~~ae~lgi 232 (329)
T cd02033 222 -EAQAFAAHAGI 232 (329)
T ss_pred -hHHHHHHHhCC
Confidence 34556666654
No 492
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=30.42 E-value=1.2e+02 Score=22.09 Aligned_cols=47 Identities=21% Similarity=0.236 Sum_probs=28.2
Q ss_pred ccCCEEEEEEeCCCC--CChHHHHHHHHHHhcCCCCCCCcEEEE-eeCCCC
Q 032598 39 RAVSAIVYVVDAADY--DNLPVSRSELHDLLSKPSLNGIPLLVL-GNKIDK 86 (137)
Q Consensus 39 ~~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~p~ivv-~nK~D~ 86 (137)
.+.|++|+--|+-+. .+...+... ..+++.....++|++++ ||+=..
T Consensus 39 ~~vD~vliAGDlFd~~~Ps~~a~~~~-~~~l~~l~~~~Ipv~~I~GNHD~~ 88 (390)
T COG0420 39 EKVDFVLIAGDLFDTNNPSPRALKLF-LEALRRLKDAGIPVVVIAGNHDSP 88 (390)
T ss_pred ccCCEEEEccccccCCCCCHHHHHHH-HHHHHHhccCCCcEEEecCCCCch
Confidence 357999998887664 233434333 34444434467998776 666544
No 493
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=30.21 E-value=1.4e+02 Score=19.20 Aligned_cols=56 Identities=20% Similarity=0.265 Sum_probs=34.6
Q ss_pred HhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 032598 32 SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 32 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 88 (137)
..+...+..+|+++++.--.+. ++....+-.-.++......++|+.+++.-.-...
T Consensus 59 ~~~~~~i~~aD~li~~tPeYn~-s~pg~lKnaiD~l~~~~~~~Kpv~~~~~s~g~~~ 114 (184)
T COG0431 59 QALREAIAAADGLIIATPEYNG-SYPGALKNAIDWLSREALGGKPVLLLGTSGGGAG 114 (184)
T ss_pred HHHHHHHHhCCEEEEECCccCC-CCCHHHHHHHHhCCHhHhCCCcEEEEecCCCchh
Confidence 4556668889999998866553 4444333333333333456899888887775443
No 494
>PRK13556 azoreductase; Provisional
Probab=29.06 E-value=1.7e+02 Score=19.13 Aligned_cols=48 Identities=8% Similarity=0.087 Sum_probs=33.5
Q ss_pred HHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCC------------CCCCCcEEEEeeC
Q 032598 36 RYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKP------------SLNGIPLLVLGNK 83 (137)
Q Consensus 36 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~------------~~~~~p~ivv~nK 83 (137)
..++.||.+|+++-.-+..-...+..|+..+...- ...++|++++..-
T Consensus 85 ~~l~~AD~iVi~~P~yn~~~Pa~LK~~iD~v~~~g~tf~~~~~g~~gll~~K~~~vi~ts 144 (208)
T PRK13556 85 NQFLEADKVVFAFPLWNFTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKVALLNAR 144 (208)
T ss_pred HHHHHCCEEEEeccccccCCcHHHHHHHHHHhcCCceeecCCCCCccccCCCEEEEEEeC
Confidence 34778999999998887655566777887776531 1346777777663
No 495
>COG4474 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.66 E-value=1.7e+02 Score=19.00 Aligned_cols=23 Identities=4% Similarity=-0.067 Sum_probs=16.2
Q ss_pred HhccCCEEEEEEeCCCCCChHHH
Q 032598 37 YCRAVSAIVYVVDAADYDNLPVS 59 (137)
Q Consensus 37 ~~~~~~~~i~v~d~~~~~~~~~~ 59 (137)
.+..+|++++++|..+..++...
T Consensus 126 ~le~sdg~ll~YD~ekegs~ky~ 148 (180)
T COG4474 126 LLEKSDGALLFYDEEKEGSPKYF 148 (180)
T ss_pred hhccCceeEEEEcCcccCChHHH
Confidence 35678888888888777665543
No 496
>PF14784 ECIST_Cterm: C-terminal domain of the ECSIT protein
Probab=28.26 E-value=1.5e+02 Score=18.15 Aligned_cols=40 Identities=18% Similarity=0.256 Sum_probs=28.1
Q ss_pred cCCEEEEEEeCCCCCChHHHHHHHHHHhcC-CCCCCCcEEE
Q 032598 40 AVSAIVYVVDAADYDNLPVSRSELHDLLSK-PSLNGIPLLV 79 (137)
Q Consensus 40 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~p~iv 79 (137)
+-||.|+.+-++-..+-+.+..|+..+.+. ....++|+++
T Consensus 83 q~dGti~Amc~tg~~~~~sL~~WI~~Lq~~NP~L~~ipV~F 123 (126)
T PF14784_consen 83 QEDGTIFAMCMTGTSDKDSLLSWIRGLQETNPNLAQIPVLF 123 (126)
T ss_pred eccceEEEEEeccCCCHHHHHHHHHHHHhhCCchhcceEEE
Confidence 467888777777666667777898888764 3445678765
No 497
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=28.03 E-value=3.2e+02 Score=22.04 Aligned_cols=66 Identities=12% Similarity=0.038 Sum_probs=40.3
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE-EEEeeCCCCC
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL-LVLGNKIDKP 87 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~~ 87 (137)
.+.+.++|||........ ......+|++++|...... +...+...+..+.+ .+.++ =+|.|+++..
T Consensus 640 ~yD~IIIDtPP~~~~~Da-~~la~~ad~~llVvr~~~t-~~~~~~~~~~~l~~----~~~~~~G~VlN~~~~~ 706 (726)
T PRK09841 640 HYDLVIVDTPPMLAVSDA-AVVGRSVGTSLLVARFGLN-TAKEVSLSMQRLEQ----AGVNIKGAILNGVIKR 706 (726)
T ss_pred cCCEEEEeCCCccccchH-HHHHHhCCeEEEEEeCCCC-CHHHHHHHHHHHHh----CCCceEEEEEeCcccC
Confidence 577899999876544211 2234678999999866542 33444444444432 33443 4789999854
No 498
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=26.73 E-value=1.5e+02 Score=17.65 Aligned_cols=28 Identities=14% Similarity=0.214 Sum_probs=16.2
Q ss_pred CCccccHHhHHHHhccCCEEEEEEeCCC
Q 032598 25 GGQPRFRSMWERYCRAVSAIVYVVDAAD 52 (137)
Q Consensus 25 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 52 (137)
|....+.+.+..+.+..+.-++-+|.+.
T Consensus 36 p~C~~~~P~l~~~~~~~~~~~y~vdvd~ 63 (122)
T TIGR01295 36 PYCRKFSGTLSGVVAQTKAPIYYIDSEN 63 (122)
T ss_pred hhHHHHhHHHHHHHHhcCCcEEEEECCC
Confidence 3345556666666655555566666663
No 499
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=26.12 E-value=1.2e+02 Score=18.36 Aligned_cols=33 Identities=15% Similarity=0.095 Sum_probs=16.3
Q ss_pred EEEEEEecCCccccHHhHHHHhccCCEEEEEEeC
Q 032598 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDA 50 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~ 50 (137)
+.+.+.|+|........ ...++.+|.+++|...
T Consensus 118 yd~IivD~~~~~~~~~~-~~~l~~~D~ii~v~~~ 150 (157)
T PF13614_consen 118 YDYIIVDLPSSLSNPDT-QAVLELADKIILVVRP 150 (157)
T ss_dssp SSEEEEEEESTTTHTHH-HHHHTTHSEEEEEEET
T ss_pred CCEEEEECcCCccHHHH-HHHHHHCCEEEEEECC
Confidence 34556666554332211 1245566666666654
No 500
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=25.81 E-value=1.1e+02 Score=23.67 Aligned_cols=17 Identities=24% Similarity=0.550 Sum_probs=12.6
Q ss_pred CCEEEEEEecCCccccH
Q 032598 15 GNVTIKLWDLGGQPRFR 31 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~ 31 (137)
++--+++||+.|+..+-
T Consensus 185 d~G~VtlwDv~g~sp~~ 201 (673)
T KOG4378|consen 185 DKGAVTLWDVQGMSPIF 201 (673)
T ss_pred cCCeEEEEeccCCCccc
Confidence 34468999999986553
Done!