Query 032598
Match_columns 137
No_of_seqs 105 out of 1835
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 05:05:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032598.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032598hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fzq_A ADP-ribosylation factor 100.0 2.1E-28 7.1E-33 156.0 15.2 135 2-136 45-179 (181)
2 1r8s_A ADP-ribosylation factor 100.0 5E-28 1.7E-32 151.4 15.7 136 1-136 28-163 (164)
3 1upt_A ARL1, ADP-ribosylation 100.0 2.5E-27 8.4E-32 149.1 16.2 136 1-136 35-170 (171)
4 1zd9_A ADP-ribosylation factor 100.0 2E-27 6.9E-32 152.1 15.5 136 1-136 51-186 (188)
5 2b6h_A ADP-ribosylation factor 100.0 2.4E-27 8.4E-32 152.3 14.4 135 2-136 58-192 (192)
6 1ksh_A ARF-like protein 2; sma 100.0 2.8E-27 9.4E-32 151.0 14.4 136 1-136 46-181 (186)
7 1zj6_A ADP-ribosylation factor 100.0 4E-27 1.4E-31 150.5 15.1 134 2-135 45-178 (187)
8 2x77_A ADP-ribosylation factor 100.0 4.1E-27 1.4E-31 150.6 14.2 135 2-136 51-185 (189)
9 4dkx_A RAS-related protein RAB 100.0 2.3E-28 7.8E-33 159.9 8.1 125 1-134 42-175 (216)
10 4bas_A ADP-ribosylation factor 100.0 1E-27 3.6E-32 154.3 11.0 135 1-135 47-189 (199)
11 1moz_A ARL1, ADP-ribosylation 99.9 6.9E-27 2.4E-31 148.6 14.0 136 1-136 46-181 (183)
12 2h17_A ADP-ribosylation factor 99.9 7.5E-27 2.6E-31 148.6 13.7 131 2-132 50-180 (181)
13 1m2o_B GTP-binding protein SAR 99.9 1.2E-26 4.1E-31 148.9 14.6 132 1-132 51-189 (190)
14 1f6b_A SAR1; gtpases, N-termin 99.9 7.6E-27 2.6E-31 150.7 13.4 133 1-133 53-197 (198)
15 2h57_A ADP-ribosylation factor 99.9 2.6E-26 9E-31 147.0 13.4 135 1-135 51-187 (190)
16 3o47_A ADP-ribosylation factor 99.9 7.9E-26 2.7E-30 156.1 15.0 135 2-136 194-328 (329)
17 3lvq_E ARF-GAP with SH3 domain 99.9 1E-25 3.5E-30 162.9 14.3 136 1-136 350-485 (497)
18 3t1o_A Gliding protein MGLA; G 99.9 7.7E-25 2.6E-29 140.4 10.6 127 2-135 54-192 (198)
19 3q72_A GTP-binding protein RAD 99.9 3.6E-24 1.2E-28 134.0 10.1 127 3-137 32-166 (166)
20 1cip_A Protein (guanine nucleo 99.9 1.5E-24 5.2E-29 150.6 8.4 135 2-136 178-345 (353)
21 2hup_A RAS-related protein RAB 99.9 1.5E-23 5.3E-28 135.4 11.6 128 2-135 59-193 (201)
22 3ohm_A Guanine nucleotide-bind 99.9 5.8E-24 2E-28 146.0 9.2 135 2-136 152-319 (327)
23 3kkq_A RAS-related protein M-R 99.9 1.4E-23 4.8E-28 133.4 10.2 127 2-136 48-183 (183)
24 3tkl_A RAS-related protein RAB 99.9 9.6E-23 3.3E-27 130.7 13.7 125 2-135 46-179 (196)
25 2g6b_A RAS-related protein RAB 99.9 1.8E-23 6.2E-28 132.4 10.1 126 2-136 41-175 (180)
26 1u8z_A RAS-related protein RAL 99.9 1.6E-23 5.4E-28 131.0 9.3 129 2-135 34-167 (168)
27 1zcb_A G alpha I/13; GTP-bindi 99.9 4.9E-24 1.7E-28 148.5 7.6 134 2-135 186-353 (362)
28 3ihw_A Centg3; RAS, centaurin, 99.9 6E-23 2.1E-27 131.0 11.9 123 2-136 50-181 (184)
29 1c1y_A RAS-related protein RAP 99.9 1.3E-23 4.5E-28 131.4 8.4 129 2-134 33-166 (167)
30 1x3s_A RAS-related protein RAB 99.9 2.7E-23 9.4E-28 133.1 10.0 129 2-135 45-178 (195)
31 3bc1_A RAS-related protein RAB 99.9 9.5E-23 3.2E-27 130.3 12.4 126 2-135 41-185 (195)
32 3t5g_A GTP-binding protein RHE 99.9 1.9E-23 6.4E-28 132.6 8.9 128 1-136 35-170 (181)
33 3oes_A GTPase rhebl1; small GT 99.9 1.2E-23 4.1E-28 135.8 7.4 127 2-136 54-188 (201)
34 3q85_A GTP-binding protein REM 99.9 6.7E-23 2.3E-27 128.6 10.6 115 15-137 49-169 (169)
35 1azs_C GS-alpha; complex (lyas 99.9 9.7E-24 3.3E-28 148.3 7.3 134 2-135 202-385 (402)
36 2ew1_A RAS-related protein RAB 99.9 1E-22 3.4E-27 131.8 11.4 125 2-135 56-189 (201)
37 2fu5_C RAS-related protein RAB 99.9 1.8E-23 6E-28 132.9 7.8 125 2-135 38-171 (183)
38 1ek0_A Protein (GTP-binding pr 99.9 2E-24 6.8E-29 135.4 3.3 125 2-135 33-169 (170)
39 2bov_A RAla, RAS-related prote 99.9 6.2E-23 2.1E-27 132.5 10.2 129 2-135 44-177 (206)
40 1z06_A RAS-related protein RAB 99.9 1.5E-22 5E-27 129.4 11.7 126 2-135 50-188 (189)
41 2a9k_A RAS-related protein RAL 99.9 3.1E-23 1.1E-27 131.8 8.4 129 2-135 48-181 (187)
42 3cbq_A GTP-binding protein REM 99.9 9.9E-23 3.4E-27 131.2 10.8 114 15-136 70-189 (195)
43 3q3j_B RHO-related GTP-binding 99.9 1.3E-23 4.4E-28 137.1 6.5 126 1-135 56-203 (214)
44 2f7s_A C25KG, RAS-related prot 99.9 6.7E-23 2.3E-27 133.6 9.9 112 16-135 83-199 (217)
45 2fg5_A RAB-22B, RAS-related pr 99.9 2.4E-22 8.3E-27 128.8 12.3 129 1-135 52-186 (192)
46 2fn4_A P23, RAS-related protei 99.9 2.8E-23 9.5E-28 131.5 7.8 130 2-135 39-172 (181)
47 2il1_A RAB12; G-protein, GDP, 99.9 2.1E-22 7.2E-27 129.2 12.0 130 2-136 56-191 (192)
48 2efe_B Small GTP-binding prote 99.9 1.4E-22 4.7E-27 128.4 10.7 128 2-135 42-175 (181)
49 3dz8_A RAS-related protein RAB 99.9 4.3E-23 1.5E-27 132.2 8.5 124 3-135 54-186 (191)
50 4dsu_A GTPase KRAS, isoform 2B 99.9 1.7E-22 5.9E-27 128.7 11.3 126 2-135 34-166 (189)
51 1r2q_A RAS-related protein RAB 99.9 1.8E-22 6.2E-27 126.4 11.2 128 2-135 36-169 (170)
52 1z0f_A RAB14, member RAS oncog 99.9 3.2E-22 1.1E-26 126.3 12.3 128 2-135 45-178 (179)
53 2hxs_A RAB-26, RAS-related pro 99.9 9E-23 3.1E-27 128.9 9.7 127 2-136 36-174 (178)
54 1zbd_A Rabphilin-3A; G protein 99.9 3.1E-22 1.1E-26 129.2 12.0 125 2-135 38-171 (203)
55 2a5j_A RAS-related protein RAB 99.9 1.4E-22 4.9E-27 129.7 10.3 125 2-135 51-184 (191)
56 1wms_A RAB-9, RAB9, RAS-relate 99.9 6.2E-22 2.1E-26 125.0 13.0 131 2-136 37-175 (177)
57 2nzj_A GTP-binding protein REM 99.9 1.1E-22 3.9E-27 128.1 9.5 125 3-135 34-169 (175)
58 1kao_A RAP2A; GTP-binding prot 99.9 2.6E-22 9E-27 125.3 11.0 126 2-135 33-166 (167)
59 3reg_A RHO-like small GTPase; 99.9 1.4E-22 4.8E-27 130.0 9.9 127 1-136 52-189 (194)
60 3tw8_B RAS-related protein RAB 99.9 1.4E-22 4.7E-27 128.3 9.7 124 2-135 39-171 (181)
61 2bme_A RAB4A, RAS-related prot 99.9 2.6E-22 9E-27 127.7 10.9 128 2-135 40-173 (186)
62 2yc2_C IFT27, small RAB-relate 99.9 7.7E-23 2.6E-27 132.2 8.4 129 2-135 52-192 (208)
63 4fid_A G protein alpha subunit 99.9 1.9E-23 6.3E-28 144.0 5.6 134 2-135 146-328 (340)
64 2atv_A RERG, RAS-like estrogen 99.9 6E-23 2E-27 132.0 7.6 127 1-136 57-192 (196)
65 2bcg_Y Protein YP2, GTP-bindin 99.9 4.3E-22 1.5E-26 128.8 11.6 128 2-135 38-171 (206)
66 1z0j_A RAB-22, RAS-related pro 99.9 6.9E-22 2.3E-26 123.9 12.1 128 2-134 36-168 (170)
67 2p5s_A RAS and EF-hand domain 99.9 1.7E-22 6E-27 130.2 9.5 126 2-136 58-198 (199)
68 2oil_A CATX-8, RAS-related pro 99.9 4.9E-22 1.7E-26 127.3 11.4 128 2-135 55-188 (193)
69 3r7w_B Gtpase2, GTP-binding pr 99.9 1.2E-22 4.1E-27 139.1 8.9 128 2-135 32-174 (331)
70 3clv_A RAB5 protein, putative; 99.9 8.6E-22 2.9E-26 126.7 12.3 111 17-135 93-204 (208)
71 2ce2_X GTPase HRAS; signaling 99.9 7.7E-22 2.6E-26 122.9 11.6 127 2-136 33-166 (166)
72 2iwr_A Centaurin gamma 1; ANK 99.9 1.7E-22 6E-27 127.8 8.6 126 1-135 35-169 (178)
73 1z2a_A RAS-related protein RAB 99.9 1.5E-22 5.2E-27 126.6 8.1 124 2-135 35-167 (168)
74 2j0v_A RAC-like GTP-binding pr 99.9 4E-23 1.4E-27 134.3 5.6 126 1-135 38-180 (212)
75 3c5c_A RAS-like protein 12; GD 99.9 3.9E-23 1.3E-27 132.1 5.4 126 1-135 50-186 (187)
76 1g16_A RAS-related protein SEC 99.9 5.5E-22 1.9E-26 124.3 10.5 126 2-136 33-166 (170)
77 2atx_A Small GTP binding prote 99.9 4.3E-22 1.5E-26 127.7 10.2 125 1-134 47-192 (194)
78 3gj0_A GTP-binding nuclear pro 99.9 4.8E-23 1.6E-27 134.8 5.8 124 2-135 45-175 (221)
79 2gf9_A RAS-related protein RAB 99.9 2.7E-22 9.4E-27 128.2 9.2 125 2-135 52-185 (189)
80 2o52_A RAS-related protein RAB 99.9 2E-22 6.7E-27 130.1 8.6 128 2-135 55-188 (200)
81 2y8e_A RAB-protein 6, GH09086P 99.9 4.1E-22 1.4E-26 125.8 9.9 129 2-136 44-178 (179)
82 3cpj_B GTP-binding protein YPT 99.9 1.9E-22 6.4E-27 132.2 8.4 128 2-135 43-176 (223)
83 2erx_A GTP-binding protein DI- 99.9 1.7E-22 5.8E-27 126.8 7.7 127 2-136 33-168 (172)
84 1z08_A RAS-related protein RAB 99.9 1.5E-22 5.1E-27 127.0 7.3 128 2-135 36-169 (170)
85 3cph_A RAS-related protein SEC 99.9 1.5E-21 5.1E-26 126.7 12.0 125 2-135 50-182 (213)
86 1ky3_A GTP-binding protein YPT 99.9 3.9E-22 1.3E-26 126.2 8.9 131 2-136 38-179 (182)
87 3bwd_D RAC-like GTP-binding pr 99.9 5E-23 1.7E-27 130.6 4.7 125 2-135 38-181 (182)
88 3con_A GTPase NRAS; structural 99.9 1.1E-21 3.7E-26 125.4 10.7 127 2-136 51-184 (190)
89 2gf0_A GTP-binding protein DI- 99.9 1.6E-22 5.5E-27 129.9 6.7 127 2-136 38-172 (199)
90 4djt_A GTP-binding nuclear pro 99.9 6.9E-22 2.4E-26 128.9 9.8 129 2-135 41-175 (218)
91 2j1l_A RHO-related GTP-binding 99.9 1.5E-22 5E-27 132.0 6.4 126 2-136 64-210 (214)
92 2fh5_B SR-beta, signal recogni 99.9 3.3E-21 1.1E-25 125.3 12.7 131 3-133 37-214 (214)
93 2g3y_A GTP-binding protein GEM 99.9 4.2E-22 1.4E-26 129.8 8.3 125 3-135 69-203 (211)
94 1vg8_A RAS-related protein RAB 99.9 3.4E-22 1.2E-26 129.2 7.2 130 2-135 38-175 (207)
95 2q3h_A RAS homolog gene family 99.9 1.4E-22 4.9E-27 130.6 5.3 125 2-135 50-195 (201)
96 1m7b_A RND3/RHOE small GTP-bin 99.9 1.4E-22 4.7E-27 129.1 5.1 126 1-135 36-183 (184)
97 4gzl_A RAS-related C3 botulinu 99.9 1.7E-22 5.7E-27 130.9 5.4 130 2-133 60-203 (204)
98 1mh1_A RAC1; GTP-binding, GTPa 99.9 2.1E-22 7.3E-27 127.9 5.5 125 2-135 35-180 (186)
99 2xtz_A Guanine nucleotide-bind 99.9 7.2E-23 2.5E-27 142.2 3.4 121 15-135 181-345 (354)
100 2fv8_A H6, RHO-related GTP-bin 99.9 1.6E-21 5.3E-26 126.4 9.3 133 2-136 55-201 (207)
101 3l0i_B RAS-related protein RAB 99.9 1.6E-22 5.5E-27 130.3 4.6 125 3-136 64-197 (199)
102 2gco_A H9, RHO-related GTP-bin 99.9 2.3E-21 8E-26 125.1 9.7 133 1-135 54-200 (201)
103 1gwn_A RHO-related GTP-binding 99.9 2.4E-22 8.1E-27 130.4 4.8 126 1-135 57-204 (205)
104 2zej_A Dardarin, leucine-rich 99.9 3.4E-22 1.2E-26 127.4 5.2 132 1-135 33-178 (184)
105 3l82_B F-box only protein 4; T 99.8 9.5E-21 3.2E-25 121.6 10.2 111 25-137 110-225 (227)
106 3llu_A RAS-related GTP-binding 99.8 6.3E-21 2.2E-25 122.6 7.9 117 14-133 66-195 (196)
107 2cjw_A GTP-binding protein GEM 99.8 9.8E-21 3.4E-25 121.5 7.3 112 15-134 54-171 (192)
108 3th5_A RAS-related C3 botulinu 99.7 3.1E-22 1.1E-26 129.4 0.0 130 2-133 60-203 (204)
109 2lkc_A Translation initiation 99.8 9.2E-20 3.1E-24 115.0 11.2 123 7-135 45-171 (178)
110 2qu8_A Putative nucleolar GTP- 99.8 1.6E-19 5.6E-24 118.6 10.6 125 7-135 66-205 (228)
111 3r7w_A Gtpase1, GTP-binding pr 99.8 3.9E-20 1.3E-24 126.6 7.7 127 2-134 36-180 (307)
112 2wji_A Ferrous iron transport 99.8 4.4E-19 1.5E-23 111.1 11.9 113 7-134 40-164 (165)
113 1u0l_A Probable GTPase ENGC; p 99.8 4.3E-20 1.5E-24 126.1 7.6 118 1-131 47-169 (301)
114 1svi_A GTP-binding protein YSX 99.8 2.6E-19 8.8E-24 114.6 10.6 108 18-134 70-194 (195)
115 2wkq_A NPH1-1, RAS-related C3 99.8 9.1E-20 3.1E-24 125.4 7.5 133 2-136 185-331 (332)
116 2dyk_A GTP-binding protein; GT 99.8 4.2E-19 1.4E-23 110.3 9.9 114 7-133 39-160 (161)
117 2gj8_A MNME, tRNA modification 99.8 3.9E-19 1.3E-23 112.2 9.0 116 7-134 42-165 (172)
118 3l2o_B F-box only protein 4; s 99.8 2.5E-19 8.4E-24 120.1 8.2 112 24-137 194-310 (312)
119 3pqc_A Probable GTP-binding pr 99.8 8.3E-19 2.8E-23 112.0 9.6 129 2-135 52-194 (195)
120 3c5h_A Glucocorticoid receptor 99.8 3.7E-20 1.3E-24 123.7 3.2 119 12-134 90-254 (255)
121 2cxx_A Probable GTP-binding pr 99.8 9.5E-20 3.3E-24 116.1 4.0 131 3-136 32-185 (190)
122 3iev_A GTP-binding protein ERA 99.8 6.1E-18 2.1E-22 115.8 12.7 120 10-135 51-182 (308)
123 2wjg_A FEOB, ferrous iron tran 99.8 4.4E-18 1.5E-22 108.3 11.2 115 7-136 44-170 (188)
124 4dhe_A Probable GTP-binding pr 99.7 2.6E-18 9.1E-23 112.1 6.8 117 14-135 76-211 (223)
125 3cb4_D GTP-binding protein LEP 99.7 9.3E-17 3.2E-21 118.1 15.5 109 16-134 70-181 (599)
126 2f9l_A RAB11B, member RAS onco 99.7 2.5E-17 8.4E-22 106.0 11.1 127 2-134 35-167 (199)
127 1wf3_A GTP-binding protein; GT 99.7 4.7E-17 1.6E-21 111.1 12.3 115 11-134 49-172 (301)
128 3dpu_A RAB family protein; roc 99.7 4.9E-18 1.7E-22 123.9 7.9 124 2-135 71-208 (535)
129 3a1s_A Iron(II) transport prot 99.7 4.2E-17 1.4E-21 109.1 11.6 113 7-134 42-166 (258)
130 3gee_A MNME, tRNA modification 99.7 5.2E-17 1.8E-21 116.8 12.5 117 7-134 271-397 (476)
131 3iby_A Ferrous iron transport 99.7 4.7E-18 1.6E-22 113.6 6.6 111 7-132 38-164 (256)
132 2hjg_A GTP-binding protein ENG 99.7 1E-17 3.5E-22 119.5 8.5 122 9-135 215-349 (436)
133 2ywe_A GTP-binding protein LEP 99.7 1.3E-16 4.3E-21 117.3 14.2 109 16-134 72-183 (600)
134 3sjy_A Translation initiation 99.7 2.4E-17 8.4E-22 116.5 10.1 113 17-134 75-191 (403)
135 4dcu_A GTP-binding protein ENG 99.7 1.9E-17 6.5E-22 118.7 9.5 123 8-135 234-369 (456)
136 1lnz_A SPO0B-associated GTP-bi 99.7 1.8E-17 6.1E-22 114.8 9.0 128 3-136 191-331 (342)
137 1xzp_A Probable tRNA modificat 99.7 4E-16 1.4E-20 112.3 16.1 117 5-134 279-404 (482)
138 2elf_A Protein translation elo 99.7 1.5E-16 5.3E-21 111.2 11.5 123 3-134 46-179 (370)
139 3b1v_A Ferrous iron uptake tra 99.7 2.4E-17 8.4E-22 111.0 7.1 104 16-134 48-163 (272)
140 3i8s_A Ferrous iron transport 99.7 1.8E-17 6.2E-22 111.7 6.2 113 7-134 40-168 (274)
141 1wb1_A Translation elongation 99.7 6.9E-17 2.4E-21 116.5 9.2 124 4-133 60-187 (482)
142 3tr5_A RF-3, peptide chain rel 99.7 3.6E-16 1.2E-20 113.7 12.8 82 4-90 69-150 (528)
143 2e87_A Hypothetical protein PH 99.7 2.7E-16 9.4E-21 109.6 11.7 125 4-135 201-336 (357)
144 1s0u_A EIF-2-gamma, translatio 99.7 2.2E-16 7.6E-21 111.8 10.7 113 17-134 81-197 (408)
145 3qq5_A Small GTP-binding prote 99.7 1.9E-16 6.4E-21 112.3 10.2 117 6-134 71-195 (423)
146 1oix_A RAS-related protein RAB 99.7 2.9E-16 9.8E-21 100.5 10.1 127 2-133 59-190 (191)
147 1zun_B Sulfate adenylate trans 99.7 3.9E-16 1.3E-20 111.3 11.7 116 6-125 93-214 (434)
148 3j2k_7 ERF3, eukaryotic polype 99.7 3.8E-16 1.3E-20 111.5 11.2 120 4-127 82-217 (439)
149 1mky_A Probable GTP-binding pr 99.7 3.3E-16 1.1E-20 111.8 10.7 117 7-134 39-165 (439)
150 1jny_A EF-1-alpha, elongation 99.7 3.1E-17 1.1E-21 117.0 5.3 119 4-126 71-204 (435)
151 3k53_A Ferrous iron transport 99.7 1.9E-15 6.3E-20 101.7 13.0 115 7-135 40-166 (271)
152 2hjg_A GTP-binding protein ENG 99.7 1.4E-16 4.8E-21 113.6 7.5 111 11-134 45-164 (436)
153 1kk1_A EIF2gamma; initiation o 99.7 3.2E-16 1.1E-20 111.0 8.9 113 17-134 83-199 (410)
154 2c78_A Elongation factor TU-A; 99.7 4.9E-16 1.7E-20 109.9 9.6 122 7-133 65-210 (405)
155 1d2e_A Elongation factor TU (E 99.7 2.7E-16 9.2E-21 111.0 8.0 125 4-133 53-193 (397)
156 3p26_A Elongation factor 1 alp 99.7 7.4E-16 2.5E-20 111.2 10.3 118 4-124 98-227 (483)
157 3izy_P Translation initiation 99.7 3.4E-17 1.2E-21 118.9 3.2 115 15-134 50-167 (537)
158 1nrj_B SR-beta, signal recogni 99.7 5.7E-18 2E-22 110.3 -0.9 78 15-92 53-138 (218)
159 3geh_A MNME, tRNA modification 99.7 9.6E-16 3.3E-20 109.9 10.4 113 9-135 264-384 (462)
160 1r5b_A Eukaryotic peptide chai 99.6 2.9E-17 9.9E-22 118.0 0.1 120 3-126 107-243 (467)
161 1zo1_I IF2, translation initia 99.6 1.5E-16 5.2E-21 114.7 2.0 116 11-132 45-164 (501)
162 1g7s_A Translation initiation 99.6 4.4E-15 1.5E-19 109.3 9.7 111 18-133 71-216 (594)
163 2h5e_A Peptide chain release f 99.6 2.6E-14 8.8E-19 104.1 13.3 80 7-91 72-151 (529)
164 4dcu_A GTP-binding protein ENG 99.6 2.3E-15 8E-20 107.9 7.7 111 12-134 66-184 (456)
165 1f60_A Elongation factor EEF1A 99.6 1.5E-15 5.1E-20 109.0 5.5 119 3-125 71-202 (458)
166 1mky_A Probable GTP-binding pr 99.6 9.2E-15 3.1E-19 104.4 9.3 122 9-135 220-355 (439)
167 3avx_A Elongation factor TS, e 99.6 1.2E-14 4E-19 112.6 10.4 119 10-133 352-484 (1289)
168 3izq_1 HBS1P, elongation facto 99.6 9.4E-16 3.2E-20 113.2 4.1 119 4-125 232-362 (611)
169 1dar_A EF-G, elongation factor 99.6 1.8E-13 6.1E-18 102.5 15.5 83 3-90 63-145 (691)
170 2qtf_A Protein HFLX, GTP-bindi 99.6 2.8E-14 9.5E-19 99.6 10.2 126 3-135 212-354 (364)
171 2aka_B Dynamin-1; fusion prote 99.6 3.6E-14 1.2E-18 96.4 10.0 112 16-132 124-250 (299)
172 1ega_A Protein (GTP-binding pr 99.5 2.9E-14 1E-18 97.3 8.4 115 11-134 50-174 (301)
173 3mca_A HBS1, elongation factor 99.5 4.9E-16 1.7E-20 114.4 -1.4 123 6-132 244-394 (592)
174 2ged_A SR-beta, signal recogni 99.5 3.1E-15 1E-19 95.5 2.0 85 15-99 89-181 (193)
175 2rdo_7 EF-G, elongation factor 99.5 1.3E-12 4.5E-17 98.0 15.5 81 4-89 62-149 (704)
176 2dy1_A Elongation factor G; tr 99.5 8.8E-13 3E-17 98.4 14.4 76 7-87 64-139 (665)
177 2xtp_A GTPase IMAP family memb 99.5 8.1E-14 2.8E-18 93.0 8.0 124 6-135 60-208 (260)
178 3vqt_A RF-3, peptide chain rel 99.5 1.9E-12 6.4E-17 94.7 14.6 82 4-90 87-168 (548)
179 2xex_A Elongation factor G; GT 99.5 2.3E-12 7.8E-17 96.6 15.2 82 4-90 62-143 (693)
180 3t5d_A Septin-7; GTP-binding p 99.4 1.1E-13 3.7E-18 93.3 5.8 121 2-133 46-202 (274)
181 2yv5_A YJEQ protein; hydrolase 99.4 6.6E-14 2.3E-18 95.6 3.7 96 27-131 66-165 (302)
182 2qag_A Septin-2, protein NEDD5 99.4 5.1E-14 1.7E-18 98.3 2.1 121 3-135 77-233 (361)
183 3lxw_A GTPase IMAP family memb 99.4 3.1E-12 1E-16 85.0 10.0 123 4-135 57-208 (247)
184 2j69_A Bacterial dynamin-like 99.4 1.8E-12 6.1E-17 97.1 8.3 115 17-135 174-325 (695)
185 1udx_A The GTP-binding protein 99.4 6.2E-12 2.1E-16 89.1 10.5 127 4-136 191-326 (416)
186 3lxx_A GTPase IMAP family memb 99.4 1.2E-11 4E-16 81.6 11.2 119 7-135 68-214 (239)
187 1jwy_B Dynamin A GTPase domain 99.3 1.1E-11 3.8E-16 84.7 10.7 116 15-135 129-262 (315)
188 3j25_A Tetracycline resistance 99.3 4.2E-12 1.4E-16 94.4 7.5 122 7-133 57-237 (638)
189 1yrb_A ATP(GTP)binding protein 99.3 6.8E-13 2.3E-17 88.5 2.1 119 16-135 108-257 (262)
190 1pui_A ENGB, probable GTP-bind 99.3 3E-11 1E-15 77.8 9.6 110 18-135 73-199 (210)
191 3p32_A Probable GTPase RV1496/ 99.3 8.5E-12 2.9E-16 86.9 6.2 108 15-134 170-283 (355)
192 2x2e_A Dynamin-1; nitration, h 99.2 2.5E-11 8.6E-16 84.4 7.8 111 16-131 129-254 (353)
193 3t34_A Dynamin-related protein 99.2 3.3E-11 1.1E-15 84.0 6.2 107 15-128 134-254 (360)
194 1n0u_A EF-2, elongation factor 99.2 6.2E-11 2.1E-15 90.5 8.0 67 16-87 97-163 (842)
195 3h2y_A GTPase family protein; 99.2 6.3E-12 2.2E-16 87.9 2.0 97 25-133 54-158 (368)
196 4fn5_A EF-G 1, elongation fact 99.2 8.7E-10 3E-14 83.0 13.5 69 16-89 84-152 (709)
197 3ec1_A YQEH GTPase; atnos1, at 99.2 1.4E-11 4.8E-16 86.2 3.1 101 25-134 56-161 (369)
198 2p67_A LAO/AO transport system 99.1 3.3E-11 1.1E-15 83.5 4.4 109 14-134 146-260 (341)
199 3def_A T7I23.11 protein; chlor 99.1 1.7E-10 5.9E-15 77.1 7.7 82 6-88 73-165 (262)
200 1puj_A YLQF, conserved hypothe 99.1 2.2E-10 7.4E-15 77.5 7.5 102 21-134 3-105 (282)
201 3zvr_A Dynamin-1; hydrolase, D 99.1 1E-09 3.5E-14 82.7 10.2 112 15-131 148-274 (772)
202 2wsm_A Hydrogenase expression/ 99.0 1.2E-10 4.2E-15 75.6 3.1 106 15-135 107-214 (221)
203 2www_A Methylmalonic aciduria 99.0 1.2E-09 4.2E-14 75.9 8.0 107 15-133 165-277 (349)
204 1h65_A Chloroplast outer envel 98.9 5.6E-09 1.9E-13 70.0 8.6 79 10-89 80-169 (270)
205 1wxq_A GTP-binding protein; st 98.9 1.7E-10 5.8E-15 81.4 1.2 38 16-53 70-114 (397)
206 2qpt_A EH domain-containing pr 98.9 3E-09 1E-13 77.9 6.4 74 18-95 155-239 (550)
207 2qnr_A Septin-2, protein NEDD5 98.8 6.6E-10 2.3E-14 75.8 1.8 108 16-135 75-214 (301)
208 1jal_A YCHF protein; nucleotid 98.7 2.2E-07 7.7E-12 64.7 11.4 36 17-52 66-108 (363)
209 3cnl_A YLQF, putative uncharac 98.6 1.1E-08 3.6E-13 68.5 2.4 93 24-131 4-97 (262)
210 2qm8_A GTPase/ATPase; G protei 98.6 1.8E-07 6.1E-12 64.7 8.1 108 15-134 146-260 (337)
211 2qag_C Septin-7; cell cycle, c 98.5 1.1E-08 3.8E-13 72.6 -0.7 105 17-132 88-224 (418)
212 4a9a_A Ribosome-interacting GT 98.5 5.1E-07 1.7E-11 63.3 7.5 84 2-87 104-195 (376)
213 2dby_A GTP-binding protein; GD 98.4 6.8E-06 2.3E-10 57.5 12.2 37 16-52 68-111 (368)
214 2hf9_A Probable hydrogenase ni 98.4 1.7E-07 5.7E-12 60.9 2.8 61 74-137 164-226 (226)
215 1t9h_A YLOQ, probable GTPase E 98.2 4.2E-07 1.5E-11 62.0 2.6 85 35-128 81-170 (307)
216 2rcn_A Probable GTPase ENGC; Y 98.1 9.1E-06 3.1E-10 56.6 7.1 82 38-129 128-213 (358)
217 2j37_W Signal recognition part 97.9 4.6E-05 1.6E-09 55.4 7.5 110 15-132 182-310 (504)
218 2ohf_A Protein OLA1, GTP-bindi 97.4 0.00019 6.6E-09 50.6 4.9 37 17-53 86-129 (396)
219 3dm5_A SRP54, signal recogniti 96.5 0.006 2.1E-07 43.7 5.9 67 15-88 181-253 (443)
220 2v3c_C SRP54, signal recogniti 96.3 0.0057 2E-07 43.7 5.0 108 15-130 179-306 (432)
221 4dzz_A Plasmid partitioning pr 95.9 0.038 1.3E-06 34.7 6.9 69 16-88 75-144 (206)
222 1j8m_F SRP54, signal recogniti 95.8 0.028 9.5E-07 38.1 6.3 66 15-88 179-253 (297)
223 3kl4_A SRP54, signal recogniti 94.8 0.04 1.4E-06 39.4 4.5 67 15-88 178-252 (433)
224 2ph1_A Nucleotide-binding prot 94.5 0.32 1.1E-05 32.0 8.2 67 15-86 127-194 (262)
225 3k9g_A PF-32 protein; ssgcid, 94.1 0.37 1.3E-05 31.6 7.9 66 15-85 143-208 (267)
226 3ea0_A ATPase, para family; al 94.1 0.7 2.4E-05 29.7 9.6 82 16-101 118-199 (245)
227 1ni3_A YCHF GTPase, YCHF GTP-b 93.6 0.25 8.6E-06 34.9 6.5 36 17-52 85-127 (392)
228 3end_A Light-independent proto 92.6 0.28 9.7E-06 33.0 5.6 83 15-101 155-238 (307)
229 3cwq_A Para family chromosome 92.1 0.45 1.5E-05 30.2 5.7 68 15-88 66-134 (209)
230 2xxa_A Signal recognition part 91.7 0.72 2.5E-05 33.0 6.9 78 15-100 182-267 (433)
231 1g3q_A MIND ATPase, cell divis 91.3 0.77 2.6E-05 29.4 6.3 81 15-101 110-191 (237)
232 1tq4_A IIGP1, interferon-induc 91.0 0.84 2.9E-05 32.4 6.6 110 18-134 121-252 (413)
233 3ec1_A YQEH GTPase; atnos1, at 90.8 0.014 4.7E-07 40.8 -2.6 64 18-89 213-289 (369)
234 3bfv_A CAPA1, CAPB2, membrane 89.4 2 6.9E-05 28.5 7.2 66 16-87 191-257 (271)
235 1wcv_1 SOJ, segregation protei 89.3 0.84 2.9E-05 29.8 5.2 71 15-88 110-183 (257)
236 3szr_A Interferon-induced GTP- 89.3 0.99 3.4E-05 33.7 6.1 71 16-90 146-230 (608)
237 3h2y_A GTPase family protein; 89.1 0.018 6.2E-07 40.2 -3.1 65 19-91 213-290 (368)
238 2qag_B Septin-6, protein NEDD5 87.7 1.1 3.6E-05 32.1 5.1 20 73-92 175-194 (427)
239 3kjh_A CO dehydrogenase/acetyl 87.6 0.53 1.8E-05 30.3 3.4 78 15-100 130-207 (254)
240 3q9l_A Septum site-determining 87.5 0.6 2.1E-05 30.3 3.6 83 16-101 113-205 (260)
241 2ffh_A Protein (FFH); SRP54, s 85.1 2 6.7E-05 30.7 5.4 67 15-88 179-251 (425)
242 1hyq_A MIND, cell division inh 84.4 0.99 3.4E-05 29.4 3.5 80 15-100 109-189 (263)
243 3la6_A Tyrosine-protein kinase 83.8 7.6 0.00026 25.9 7.8 68 16-88 201-268 (286)
244 3cio_A ETK, tyrosine-protein k 82.7 8.7 0.0003 25.8 7.7 67 16-88 213-280 (299)
245 2oze_A ORF delta'; para, walke 81.6 5.4 0.00019 26.4 6.3 71 15-88 153-226 (298)
246 1cp2_A CP2, nitrogenase iron p 79.1 2.1 7.1E-05 28.0 3.5 71 15-86 114-186 (269)
247 3e70_C DPA, signal recognition 77.5 8.8 0.0003 26.3 6.3 92 16-124 211-309 (328)
248 2xj4_A MIPZ; replication, cell 77.4 2.2 7.4E-05 28.4 3.3 34 16-51 103-136 (286)
249 3sop_A Neuronal-specific septi 76.8 3.1 0.00011 27.6 3.8 45 41-91 112-157 (270)
250 1zu4_A FTSY; GTPase, signal re 75.5 12 0.0004 25.5 6.5 80 15-101 190-282 (320)
251 2afh_E Nitrogenase iron protei 75.4 3 0.0001 27.6 3.5 71 15-86 117-189 (289)
252 3ez9_A Para; DNA binding, wing 71.7 5.6 0.00019 27.8 4.3 36 15-52 246-281 (403)
253 1vma_A Cell division protein F 69.1 6.2 0.00021 26.7 3.9 80 15-101 185-277 (306)
254 2yhs_A FTSY, cell division pro 65.6 9.7 0.00033 27.9 4.5 80 15-101 374-466 (503)
255 1ls1_A Signal recognition part 65.5 12 0.00041 25.1 4.8 80 15-101 179-265 (295)
256 1ni3_A YCHF GTPase, YCHF GTP-b 60.3 39 0.0013 23.8 6.7 60 71-133 221-305 (392)
257 1byi_A Dethiobiotin synthase; 57.5 32 0.0011 21.4 6.0 68 15-87 107-180 (224)
258 3hyn_A Putative signal transdu 57.2 33 0.0011 21.6 5.6 53 27-83 66-118 (189)
259 2px0_A Flagellar biosynthesis 56.6 34 0.0012 22.9 5.8 67 15-88 181-253 (296)
260 3u7r_A NADPH-dependent FMN red 49.9 44 0.0015 20.8 5.8 51 33-83 60-113 (190)
261 1uf3_A Hypothetical protein TT 49.7 43 0.0015 20.6 6.1 60 19-83 9-73 (228)
262 3fvw_A Putative NAD(P)H-depend 49.6 43 0.0015 20.6 5.7 53 33-85 60-121 (192)
263 1s2d_A Purine trans deoxyribos 46.4 48 0.0017 20.2 5.2 39 37-81 78-116 (167)
264 3k1y_A Oxidoreductase; structu 46.4 51 0.0017 20.5 5.8 50 33-83 78-127 (191)
265 2q62_A ARSH; alpha/beta, flavo 45.8 60 0.002 21.1 7.1 51 34-84 92-146 (247)
266 1bif_A 6-phosphofructo-2-kinas 44.1 26 0.00087 25.1 3.8 49 17-66 87-145 (469)
267 4hs4_A Chromate reductase; tri 43.3 58 0.002 20.3 6.5 51 34-84 67-119 (199)
268 1rtt_A Conserved hypothetical 41.1 44 0.0015 20.4 4.1 50 35-84 67-118 (193)
269 1rj9_A FTSY, signal recognitio 39.9 83 0.0029 21.1 6.6 78 17-101 185-275 (304)
270 1f8y_A Nucleoside 2-deoxyribos 38.6 45 0.0015 20.1 3.8 42 37-84 75-116 (157)
271 2yvt_A Hypothetical protein AQ 38.0 76 0.0026 20.1 6.1 36 19-54 9-46 (260)
272 4eq6_A Chromosome segregation 37.8 78 0.0027 20.2 5.6 45 18-62 9-55 (214)
273 3fkq_A NTRC-like two-domain pr 35.4 40 0.0014 23.2 3.6 36 15-52 258-293 (373)
274 3gv0_A Transcriptional regulat 34.4 76 0.0026 20.4 4.7 60 15-85 39-100 (288)
275 1eiw_A Hypothetical protein MT 34.1 20 0.00069 20.4 1.6 42 37-83 35-76 (111)
276 3pg5_A Uncharacterized protein 33.5 48 0.0016 22.8 3.7 35 16-52 153-187 (361)
277 2ark_A Flavodoxin; FMN, struct 32.9 84 0.0029 19.0 8.0 65 15-85 33-99 (188)
278 3ez2_A Plasmid partition prote 32.8 38 0.0013 23.5 3.1 36 15-52 243-278 (398)
279 3fwy_A Light-independent proto 32.4 1.2E+02 0.004 20.5 5.6 82 16-101 163-245 (314)
280 3lcm_A SMU.1420, putative oxid 32.3 90 0.0031 19.2 5.7 51 34-84 67-129 (196)
281 2vzf_A NADH-dependent FMN redu 32.1 89 0.003 19.1 6.5 47 35-82 64-110 (197)
282 3qk7_A Transcriptional regulat 31.6 1.1E+02 0.0036 19.8 5.3 60 15-85 39-99 (294)
283 3h75_A Periplasmic sugar-bindi 30.3 1E+02 0.0034 20.6 4.9 62 16-87 34-99 (350)
284 1t0i_A YLR011WP; FMN binding p 30.2 93 0.0032 18.8 5.5 47 34-82 78-124 (191)
285 3svl_A Protein YIEF; E. coli C 29.5 1E+02 0.0035 19.0 6.7 51 34-84 66-118 (193)
286 3ehd_A Uncharacterized conserv 28.5 1E+02 0.0035 18.7 4.5 50 36-91 65-114 (162)
287 3h16_A TIR protein; bacteria T 28.5 51 0.0017 19.5 2.8 55 28-86 61-118 (154)
288 3gfs_A FMN-dependent NADPH-azo 28.1 47 0.0016 19.9 2.7 50 34-84 57-106 (174)
289 2nx2_A Hypothetical protein YP 26.9 96 0.0033 19.1 3.9 19 35-53 125-143 (181)
290 1t5b_A Acyl carrier protein ph 26.7 1.1E+02 0.0038 18.5 5.3 50 36-85 82-143 (201)
291 3ha2_A NADPH-quinone reductase 26.5 1.1E+02 0.0039 18.6 7.8 65 19-84 31-102 (177)
292 1o5k_A DHDPS, dihydrodipicolin 26.4 1.5E+02 0.0051 19.9 5.1 40 39-81 106-145 (306)
293 2ojp_A DHDPS, dihydrodipicolin 26.4 1.5E+02 0.005 19.8 5.1 39 40-81 96-134 (292)
294 1d4a_A DT-diaphorase, quinone 26.2 1.4E+02 0.0048 19.5 5.8 49 37-85 90-150 (273)
295 3l21_A DHDPS, dihydrodipicolin 25.9 1.5E+02 0.0052 19.9 5.1 45 39-86 109-157 (304)
296 1xky_A Dihydrodipicolinate syn 25.1 1.4E+02 0.0048 20.0 4.8 40 39-81 106-145 (301)
297 2p62_A Hypothetical protein PH 24.2 1.6E+02 0.0053 19.4 6.2 62 6-70 47-115 (241)
298 2jvf_A De novo protein M7; tet 23.9 34 0.0012 17.8 1.2 24 112-135 52-75 (96)
299 3eb2_A Putative dihydrodipicol 23.9 1.4E+02 0.0049 19.9 4.6 40 39-81 98-137 (300)
300 1rli_A Trp repressor binding p 23.5 1.2E+02 0.004 18.0 3.9 50 35-84 66-125 (184)
301 2fz5_A Flavodoxin; alpha/beta 23.4 1.1E+02 0.0036 17.1 4.1 62 16-85 28-91 (137)
302 2fzv_A Putative arsenical resi 23.0 1.5E+02 0.005 19.8 4.5 52 33-84 116-171 (279)
303 3f2v_A General stress protein 22.6 1.5E+02 0.005 18.4 5.9 52 34-85 52-111 (192)
304 2v9d_A YAGE; dihydrodipicolini 22.4 1.6E+02 0.0055 20.2 4.7 40 39-81 125-164 (343)
305 3abz_A Beta-glucosidase I; gly 21.9 1.3E+02 0.0045 23.7 4.5 44 36-83 569-623 (845)
306 3r6w_A FMN-dependent NADH-azor 21.8 1.5E+02 0.0051 18.3 5.5 49 36-84 83-147 (212)
307 2a5l_A Trp repressor binding p 21.5 1.4E+02 0.0049 17.9 5.7 51 35-85 66-119 (200)
308 2ehh_A DHDPS, dihydrodipicolin 21.5 1.3E+02 0.0046 19.9 4.1 45 39-86 94-142 (294)
309 2f62_A Nucleoside 2-deoxyribos 21.4 1.5E+02 0.005 18.0 4.2 44 35-84 62-108 (161)
310 1sqs_A Conserved hypothetical 21.0 1.7E+02 0.0057 18.5 6.0 50 35-84 74-126 (242)
311 2yxg_A DHDPS, dihydrodipicolin 20.9 1.4E+02 0.0047 19.8 4.1 40 39-81 94-133 (289)
312 2vc6_A MOSA, dihydrodipicolina 20.6 1.4E+02 0.0048 19.8 4.1 45 39-86 94-142 (292)
313 3tak_A DHDPS, dihydrodipicolin 20.3 1.5E+02 0.0051 19.7 4.1 40 39-81 95-134 (291)
314 3hcw_A Maltose operon transcri 20.2 1.2E+02 0.004 19.6 3.6 61 15-86 41-103 (295)
315 3m5v_A DHDPS, dihydrodipicolin 20.2 1.5E+02 0.005 19.9 4.1 45 39-86 102-150 (301)
316 3zyz_A Beta-D-glucoside glucoh 20.1 2E+02 0.0069 22.1 5.2 15 35-49 422-436 (713)
No 1
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.96 E-value=2.1e-28 Score=155.99 Aligned_cols=135 Identities=29% Similarity=0.589 Sum_probs=114.8
Q ss_pred CCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
.||+|++...+..++..+.+|||||++.++..+..+++.+|++++|+|+++.++++....|+..+.......++|+++++
T Consensus 45 ~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~ 124 (181)
T 1fzq_A 45 TPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFA 124 (181)
T ss_dssp EEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEE
T ss_pred cCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEE
Confidence 58899888888888999999999999999999999999999999999999999999988888888665444679999999
Q ss_pred eCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 82 NKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 82 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
||+|+.+.....++.+.++........+.++++||++|+|++++|+++.+.+.++
T Consensus 125 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 125 NKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 179 (181)
T ss_dssp ECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC---
T ss_pred ECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHHHhc
Confidence 9999987777667777665443344567899999999999999999999988654
No 2
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.96 E-value=5e-28 Score=151.39 Aligned_cols=136 Identities=29% Similarity=0.640 Sum_probs=115.8
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
+.||+++....+..++..+.+|||||+++++..+..+++.+|++++|+|++++++++....|+..+.......++|++++
T Consensus 28 ~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv 107 (164)
T 1r8s_A 28 TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVF 107 (164)
T ss_dssp CCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEE
T ss_pred ccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEE
Confidence 36899988888888999999999999999999999999999999999999999999998889888876544468999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
+||+|+.+.....++...++........++++++||++|+|++++|++|.+.+.++
T Consensus 108 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 163 (164)
T 1r8s_A 108 ANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 163 (164)
T ss_dssp EECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC---
T ss_pred EECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHHhhc
Confidence 99999987666666777666444444567899999999999999999999988754
No 3
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.96 E-value=2.5e-27 Score=149.06 Aligned_cols=136 Identities=35% Similarity=0.680 Sum_probs=118.1
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
+.||++.....+..++..+.+|||||++++...+..+++.+|++++|+|++++.+++....|+..+.......++|++++
T Consensus 35 ~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv 114 (171)
T 1upt_A 35 TIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVF 114 (171)
T ss_dssp CCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEE
T ss_pred cCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEE
Confidence 36899988888888899999999999999999999999999999999999999999998888888876544468999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
+||+|+.+.....++...++.......++.++++||++|+|++++|+++.+.+.++
T Consensus 115 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 170 (171)
T 1upt_A 115 ANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 170 (171)
T ss_dssp EECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred EECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHHhhc
Confidence 99999987766667777665444445567899999999999999999999998765
No 4
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.96 E-value=2e-27 Score=152.12 Aligned_cols=136 Identities=69% Similarity=1.240 Sum_probs=116.3
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
+.||++.++..+..++..+.+|||||++++...+..+++.+|++++|+|+++.++++.+..|+..+.......++|+++|
T Consensus 51 ~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv 130 (188)
T 1zd9_A 51 MIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVL 130 (188)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEE
T ss_pred cCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEE
Confidence 46899999888999999999999999999999999999999999999999999999999888888876544467999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
+||+|+.......++...++........+.++++||++|+|++++|++|.+.+.++
T Consensus 131 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 186 (188)
T 1zd9_A 131 GNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSR 186 (188)
T ss_dssp EECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC--
T ss_pred EECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 99999987666666666665443444567899999999999999999999988754
No 5
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.95 E-value=2.4e-27 Score=152.34 Aligned_cols=135 Identities=30% Similarity=0.635 Sum_probs=112.5
Q ss_pred CCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
.||+++....++.++..+.+|||||+++++..+..+++.+|++++|+|++++.+++....|+..+.......++|+++++
T Consensus 58 ~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~ 137 (192)
T 2b6h_A 58 IPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFA 137 (192)
T ss_dssp EEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEE
T ss_pred CCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEE
Confidence 58899888888899999999999999999999999999999999999999999999998998888765444689999999
Q ss_pred eCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 82 NKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 82 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
||+|+.+.....++...++........+.++++||++|+|++++|++|.+.+.++
T Consensus 138 NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~q 192 (192)
T 2b6h_A 138 NKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 192 (192)
T ss_dssp ECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHTTTC
T ss_pred ECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHHhcC
Confidence 9999987766677777776544444567899999999999999999999988653
No 6
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.95 E-value=2.8e-27 Score=150.99 Aligned_cols=136 Identities=32% Similarity=0.596 Sum_probs=117.5
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
+.||++++...+..++..+++|||||++++...+..+++.+|++++|+|++++.+++....|+..+.......++|++++
T Consensus 46 ~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv 125 (186)
T 1ksh_A 46 ISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIF 125 (186)
T ss_dssp CCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEE
T ss_pred ccccCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEE
Confidence 46899988888888999999999999999999999999999999999999999999998888888876544467999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
+||+|+.+.....++.+.++........++++++||++|+|++++|+++.+.+.++
T Consensus 126 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 126 ANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp EECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred EeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 99999988777777777665433334567899999999999999999999988653
No 7
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=4e-27 Score=150.50 Aligned_cols=134 Identities=27% Similarity=0.516 Sum_probs=111.8
Q ss_pred CCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
.||+|++...+..++..+.+|||||+++++..+..+++.+|++++|+|+++.++++....|+..+.......++|+++++
T Consensus 45 ~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~ 124 (187)
T 1zj6_A 45 SPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFA 124 (187)
T ss_dssp ECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEE
T ss_pred cCCCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEE
Confidence 58999888888889999999999999999999999999999999999999999999999999888775434679999999
Q ss_pred eCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 82 NKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 82 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
||+|+.+.....++.+.++.......++.++++||++|+|++++|++|++.+.+
T Consensus 125 NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 125 NKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKI 178 (187)
T ss_dssp ECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC
T ss_pred ECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 999998766666666666543333456789999999999999999999998754
No 8
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.95 E-value=4.1e-27 Score=150.63 Aligned_cols=135 Identities=36% Similarity=0.646 Sum_probs=117.6
Q ss_pred CCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
.||++++...+..++..+.+|||||+++++..+..+++.+|++++|+|++++++++....|+..+.......++|+++++
T Consensus 51 ~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~ 130 (189)
T 2x77_A 51 VPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFA 130 (189)
T ss_dssp CSSTTCCEEEEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEE
T ss_pred CCCCceEEEEEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEE
Confidence 58999888888889999999999999999988888999999999999999999999998888888776555789999999
Q ss_pred eCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 82 NKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 82 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
||+|+.+.....++...++........++++++||++|+|++++++++.+.+.++
T Consensus 131 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 131 NKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp ECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred ECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHHHhc
Confidence 9999987766667777766444445567899999999999999999999988654
No 9
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.95 E-value=2.3e-28 Score=159.88 Aligned_cols=125 Identities=21% Similarity=0.360 Sum_probs=97.1
Q ss_pred CCCcccceeeE--EE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMRK--VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~~--~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
+.||+|.++.. +. ...+++++|||+|+++++++++.+++.++++++|||+++..+++.+..|+..+.... ..++|
T Consensus 42 ~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~-~~~~p 120 (216)
T 4dkx_A 42 YQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTER-GSDVI 120 (216)
T ss_dssp --------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-TTSSE
T ss_pred cCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhc-CCCCe
Confidence 46899865543 33 445899999999999999999999999999999999999999999999998886543 26799
Q ss_pred EEEEeeCCCCCCCCCH-----HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 77 LLVLGNKIDKPEALSK-----EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
++||+||+|+.+.+.+ .++...++ +.|++|||++|+||+++|+.|++.+.
T Consensus 121 iilVgNK~Dl~~~r~V~~~e~~~~a~~~~--------~~~~e~SAktg~nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 121 IMLVGNKTDLADKRQVSIEEGERKAKELN--------VMFIETSAKAGYNVKQLFRRVAAALP 175 (216)
T ss_dssp EEEEEECTTCGGGCCSCHHHHHHHHHHHT--------CEEEEEBTTTTBSHHHHHHHHHHHC-
T ss_pred EEEEeeccchHhcCcccHHHHhhHHHHhC--------CeeEEEeCCCCcCHHHHHHHHHHHHH
Confidence 9999999999765432 23444444 35999999999999999999998875
No 10
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.95 E-value=1e-27 Score=154.26 Aligned_cols=135 Identities=28% Similarity=0.605 Sum_probs=115.6
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCC-------C
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSL-------N 73 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-------~ 73 (137)
+.||+|++...++..++.+.+|||||++++...+..+++.+|++++|+|+++..+++.+..|+..+...... .
T Consensus 47 ~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (199)
T 4bas_A 47 ITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGG 126 (199)
T ss_dssp CCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSC
T ss_pred cccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccC
Confidence 479999999999999999999999999999999999999999999999999999999998898888764211 3
Q ss_pred CCcEEEEeeCCCCCCCCCHHHHHHHhCCCCC-CCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 74 GIPLLVLGNKIDKPEALSKEDLMEQMGLKSI-TDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 74 ~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++|+++|+||+|+.......++...++.... ....+.++++||++|+|++++|++|.+.+.+
T Consensus 127 ~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 189 (199)
T 4bas_A 127 RVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASR 189 (199)
T ss_dssp BCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHH
Confidence 7999999999999887776777666653222 3356789999999999999999999998864
No 11
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.95 E-value=6.9e-27 Score=148.62 Aligned_cols=136 Identities=33% Similarity=0.629 Sum_probs=114.5
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
+.||+|+....+..++..+.+|||||++++...+..+++.+|++++|+|+++..+++....|+..+.......++|++++
T Consensus 46 ~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv 125 (183)
T 1moz_A 46 TKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVF 125 (183)
T ss_dssp ECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEE
T ss_pred cCCcCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEE
Confidence 35899988888888899999999999999999999999999999999999999999999999888877554578999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
+||+|+.+.....++.+.++........+.++++||++|+|+++++++|.+.+.++
T Consensus 126 ~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 126 ANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 181 (183)
T ss_dssp EECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHHH
T ss_pred EECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHHHhc
Confidence 99999987766777777776554445677899999999999999999999988653
No 12
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.95 E-value=7.5e-27 Score=148.60 Aligned_cols=131 Identities=27% Similarity=0.529 Sum_probs=113.1
Q ss_pred CCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
.||+|++...+..++..+.+|||||++++...+..+++.+|++++|+|+++..+++....|+..+.......++|+++++
T Consensus 50 ~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~ 129 (181)
T 2h17_A 50 SPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFA 129 (181)
T ss_dssp ECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEE
T ss_pred CCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEE
Confidence 58999888888889999999999999999999999999999999999999999999998888888765434679999999
Q ss_pred eCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHh
Q 032598 82 NKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 82 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
||+|+.+.....++.+.++........+.++++||++|+|++++|++|.+.
T Consensus 130 NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 130 NKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp ECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred ECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHhh
Confidence 999998766666676666544334456789999999999999999999865
No 13
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.95 E-value=1.2e-26 Score=148.90 Aligned_cols=132 Identities=33% Similarity=0.575 Sum_probs=113.1
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
+.||++.+...+..++..+.+|||||++.++..+..+++.+|++++|+|++++.+++....|+..+.......++|++++
T Consensus 51 ~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv 130 (190)
T 1m2o_B 51 LQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVIL 130 (190)
T ss_dssp CCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEE
T ss_pred cccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEE
Confidence 46899988888888899999999999999999999999999999999999999999999999988876544467999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCC-------CCCCceeEEEeecccCCChHHHHHHHHHh
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKS-------ITDREVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
+||+|+.+.....++.+.++... .....+.++++||++|+|++++|++|.+.
T Consensus 131 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 131 GNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp EECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred EECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 99999987666667777665432 12346789999999999999999999875
No 14
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.95 E-value=7.6e-27 Score=150.73 Aligned_cols=133 Identities=33% Similarity=0.615 Sum_probs=107.8
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
+.||++.+...+..++..+.+|||||++.++..+..+++.+|++++|+|++++++++....|+..+.......++|++++
T Consensus 53 ~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv 132 (198)
T 1f6b_A 53 HVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILIL 132 (198)
T ss_dssp --CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEE
T ss_pred cCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEE
Confidence 46899988888888899999999999999999999999999999999999999999999999988876544467999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCC---------C---CCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKS---------I---TDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~---------~---~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
+||+|+.......++.+.++... . ....+.+++|||++|+|++++|++|.+.+
T Consensus 133 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 133 GNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp EECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred EECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 99999987666666666665321 0 12457899999999999999999998765
No 15
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.94 E-value=2.6e-26 Score=147.03 Aligned_cols=135 Identities=27% Similarity=0.619 Sum_probs=113.6
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCC--CCCcEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSL--NGIPLL 78 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~p~i 78 (137)
+.||+++....+..++..+.+|||||+++++..+..+++.+|++++|+|+++..+++....|+..+...... .++|++
T Consensus 51 ~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~pii 130 (190)
T 2h57_A 51 ILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPIL 130 (190)
T ss_dssp CCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEE
T ss_pred cCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEE
Confidence 468899888888888999999999999999999999999999999999999988899888888888765443 679999
Q ss_pred EEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 79 VLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 79 vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+|+||+|+.......++.+.+........++.++++||++|+|++++|++|.+.+.+
T Consensus 131 lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 131 FFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp EEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred EEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 999999998766666666666533333346789999999999999999999988764
No 16
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.94 E-value=7.9e-26 Score=156.12 Aligned_cols=135 Identities=30% Similarity=0.646 Sum_probs=116.0
Q ss_pred CCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
.||++..+..++.+++.+++|||||++.+..++..+++.+|++++|+|+++..+++.+..++..+.......++|+++|+
T Consensus 194 ~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~ 273 (329)
T 3o47_A 194 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFA 273 (329)
T ss_dssp EEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEE
T ss_pred ccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEE
Confidence 47889888899999999999999999999999999999999999999999999999999888888776555689999999
Q ss_pred eCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 82 NKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 82 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
||+|+.+.....++...++........+.++++||++|+|++++|++|.+.+.++
T Consensus 274 NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~~~ 328 (329)
T 3o47_A 274 NKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 328 (329)
T ss_dssp ECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHTC-
T ss_pred ECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHHhc
Confidence 9999988877788888887766666788999999999999999999999988764
No 17
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.94 E-value=1e-25 Score=162.91 Aligned_cols=136 Identities=34% Similarity=0.665 Sum_probs=120.8
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
+.||++.++..+..+++.+.+|||||++.++.++..+++.+|++++|+|+++..+++.+..|+..+.......++|+++|
T Consensus 350 ~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv 429 (497)
T 3lvq_E 350 TIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF 429 (497)
T ss_dssp CCCCSSEEEEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEE
T ss_pred cCCccceeEEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEE
Confidence 46999999999999999999999999999999999999999999999999999999999999988877655568999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
+||+|+.+.....++...++........+.++++||++|+|++++|++|.+.+.++
T Consensus 430 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~~~ 485 (497)
T 3lvq_E 430 ANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKSK 485 (497)
T ss_dssp EECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHCC--
T ss_pred EECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 99999988777777888887665556678899999999999999999999988653
No 18
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.92 E-value=7.7e-25 Score=140.44 Aligned_cols=127 Identities=19% Similarity=0.239 Sum_probs=100.8
Q ss_pred CCcccceeeE-----EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCC------CCCChHHHHHHHHHHhcCC
Q 032598 2 IPTVGFNMRK-----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAA------DYDNLPVSRSELHDLLSKP 70 (137)
Q Consensus 2 ~pt~~~~~~~-----~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~------~~~~~~~~~~~~~~~~~~~ 70 (137)
.||++.++.. ++...+.+++|||||++++...+..+++.+|++++|+|++ +.+++..+..|+..+. .
T Consensus 54 ~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~--~ 131 (198)
T 3t1o_A 54 ERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG--L 131 (198)
T ss_dssp CEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT--C
T ss_pred ccceeeeecccccccccCCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc--c
Confidence 3566655442 3345689999999999999999999999999999999999 4455666667777663 2
Q ss_pred CCCCCcEEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCce-eEEEeecccCCChHHHHHHHHHhhhh
Q 032598 71 SLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREV-CCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 71 ~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
...++|+++|+||+|+.+.....+........ ++ .++++||++|+|++++|++|.+.+.+
T Consensus 132 ~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~ 192 (198)
T 3t1o_A 132 TLDDVPIVIQVNKRDLPDALPVEMVRAVVDPE-----GKFPVLEAVATEGKGVFETLKEVSRLVLA 192 (198)
T ss_dssp CTTSSCEEEEEECTTSTTCCCHHHHHHHHCTT-----CCSCEEECBGGGTBTHHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEEEchhcccccCHHHHHHHHHhc-----CCceEEEEecCCCcCHHHHHHHHHHHHHH
Confidence 34689999999999998776666666665532 33 69999999999999999999998864
No 19
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.91 E-value=3.6e-24 Score=134.01 Aligned_cols=127 Identities=14% Similarity=0.170 Sum_probs=83.6
Q ss_pred CcccceeeE---EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEE
Q 032598 3 PTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLV 79 (137)
Q Consensus 3 pt~~~~~~~---~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 79 (137)
|+.+..+.. ++...+.+.+|||||++.+...+..+++.+|++++|+|++++.+++.+..|+..+.......++|+++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~il 111 (166)
T 3q72_A 32 EAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIIL 111 (166)
T ss_dssp ----CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEE
T ss_pred CccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 455544332 33446789999999999999999999999999999999999999999999998887765557899999
Q ss_pred EeeCCCCCCCCCH--H---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhcC
Q 032598 80 LGNKIDKPEALSK--E---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSKS 137 (137)
Q Consensus 80 v~nK~D~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~ 137 (137)
++||+|+.+.... . ...... +++++++||++|+|++++|++|.+.+.++|
T Consensus 112 v~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~r 166 (166)
T 3q72_A 112 VGNKSDLVRSREVSVDEGRACAVVF--------DCKFIETSAALHHNVQALFEGVVRQIRLRR 166 (166)
T ss_dssp EEECTTCCSSCCSCHHHHHHHHHHT--------TCEEEECBGGGTBSHHHHHHHHHHHHHHHC
T ss_pred EEeccccccccccCHHHHHHHHHHh--------CCcEEEeccCCCCCHHHHHHHHHHHHHhcC
Confidence 9999999765432 2 222222 246999999999999999999999988654
No 20
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.91 E-value=1.5e-24 Score=150.61 Aligned_cols=135 Identities=20% Similarity=0.319 Sum_probs=108.1
Q ss_pred CCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCC----------CChHHHHHHHHHHhcCCC
Q 032598 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADY----------DNLPVSRSELHDLLSKPS 71 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~ 71 (137)
.||+|++...+..+++.+++|||+|++++++.|.+++++++++|+|+|+++. .++++...|+..+.....
T Consensus 178 ~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~ 257 (353)
T 1cip_A 178 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKW 257 (353)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred CceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcc
Confidence 5889988888999999999999999999999999999999999999999994 458888889988887655
Q ss_pred CCCCcEEEEeeCCCCCCC-----------------CCHHHHHHHhC-----CCCC-CCCceeEEEeecccCCChHHHHHH
Q 032598 72 LNGIPLLVLGNKIDKPEA-----------------LSKEDLMEQMG-----LKSI-TDREVCCYMISCKNSTNIDTVIDW 128 (137)
Q Consensus 72 ~~~~p~ivv~nK~D~~~~-----------------~~~~~~~~~~~-----~~~~-~~~~~~~~~~Sa~~~~~v~~~~~~ 128 (137)
..++|+++++||+|+... ....+...... .... ..+.+.+++|||++|+||+++|.+
T Consensus 258 ~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~ 337 (353)
T 1cip_A 258 FTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDA 337 (353)
T ss_dssp GTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred ccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHH
Confidence 578999999999998421 22222222111 1111 135678999999999999999999
Q ss_pred HHHhhhhc
Q 032598 129 LVKHSKSK 136 (137)
Q Consensus 129 i~~~~~~~ 136 (137)
+.+.+.++
T Consensus 338 v~~~i~~~ 345 (353)
T 1cip_A 338 VTDVIIKN 345 (353)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988653
No 21
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.91 E-value=1.5e-23 Score=135.45 Aligned_cols=128 Identities=21% Similarity=0.344 Sum_probs=96.5
Q ss_pred CCccccee--eEEEeCC--EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~--~~~~~~~--~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+ ..+..++ +.+.+|||||++++...+..+++.+|++++|+|+++..+++.+..|+..+.... ..++|+
T Consensus 59 ~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~-~~~~pi 137 (201)
T 2hup_A 59 GSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQ 137 (201)
T ss_dssp ------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHS-CTTCEE
T ss_pred CCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCE
Confidence 47777443 4455544 799999999999999999999999999999999999888988888888876543 367999
Q ss_pred EEEeeCCCCCCCC--CHHHHHHHhCCCCCCCCce-eEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEAL--SKEDLMEQMGLKSITDREV-CCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++|+||+|+.+.+ ...+....... .++ .++++||++|+|++++|++|.+.+.+
T Consensus 138 ilv~NK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 193 (201)
T 2hup_A 138 LLIGNKSDLSELREVSLAEAQSLAEH-----YDILCAIETSAKDSSNVEEAFLRVATELIM 193 (201)
T ss_dssp EEEEECTTCGGGCCSCHHHHHHHHHH-----TTCSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEEECCccccccccCHHHHHHHHHH-----cCCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999997533 22222222211 123 68999999999999999999998864
No 22
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.90 E-value=5.8e-24 Score=146.00 Aligned_cols=135 Identities=18% Similarity=0.288 Sum_probs=108.1
Q ss_pred CCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCC----------CCCChHHHHHHHHHHhcCCC
Q 032598 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAA----------DYDNLPVSRSELHDLLSKPS 71 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~ 71 (137)
.||+|++...+..+++++++|||+|++++++.|.+|+++++++++|+|++ +..++.+...|+..+.....
T Consensus 152 ~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~ 231 (327)
T 3ohm_A 152 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW 231 (327)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGG
T ss_pred CceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhc
Confidence 68999999999999999999999999999999999999999999999665 45667778888888887666
Q ss_pred CCCCcEEEEeeCCCCCCC------------------CCHHHH----HHHhC-CCCCCCCceeEEEeecccCCChHHHHHH
Q 032598 72 LNGIPLLVLGNKIDKPEA------------------LSKEDL----MEQMG-LKSITDREVCCYMISCKNSTNIDTVIDW 128 (137)
Q Consensus 72 ~~~~p~ivv~nK~D~~~~------------------~~~~~~----~~~~~-~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 128 (137)
..++|+++++||+|+.+. ....+. ...+. ......+.+.+++|||++++||+++|..
T Consensus 232 ~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~ 311 (327)
T 3ohm_A 232 FQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAA 311 (327)
T ss_dssp GTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHH
T ss_pred cCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHH
Confidence 678999999999997532 122221 11121 1122345678999999999999999999
Q ss_pred HHHhhhhc
Q 032598 129 LVKHSKSK 136 (137)
Q Consensus 129 i~~~~~~~ 136 (137)
+.+.+.++
T Consensus 312 v~~~Il~~ 319 (327)
T 3ohm_A 312 VKDTILQL 319 (327)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99988754
No 23
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.90 E-value=1.4e-23 Score=133.36 Aligned_cols=127 Identities=18% Similarity=0.254 Sum_probs=100.5
Q ss_pred CCcccceee-EEEe--CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 2 IPTVGFNMR-KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 2 ~pt~~~~~~-~~~~--~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.||++..+. .+.. ..+.+.+|||||++.+...+..+++.+|++++|+|++++.+++.+..|+..+.......++|++
T Consensus 48 ~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i 127 (183)
T 3kkq_A 48 DPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMI 127 (183)
T ss_dssp CTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEE
T ss_pred CCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 466664443 2333 3466788999999999999999999999999999999998999888898888765445789999
Q ss_pred EEeeCCCCCCCCC--H---HHHHHHhCCCCCCCCceeEEEeecc-cCCChHHHHHHHHHhhhhc
Q 032598 79 VLGNKIDKPEALS--K---EDLMEQMGLKSITDREVCCYMISCK-NSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 79 vv~nK~D~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~v~~~~~~i~~~~~~~ 136 (137)
+++||+|+.+... . ..+...++ +.++++||+ +|+|++++|++|.+.+.++
T Consensus 128 lv~nK~Dl~~~~~v~~~~~~~~~~~~~--------~~~~~~Sa~~~~~~v~~l~~~l~~~i~~q 183 (183)
T 3kkq_A 128 LVANKVDLMHLRKVTRDQGKEMATKYN--------IPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183 (183)
T ss_dssp EEEECTTCSTTCCSCHHHHHHHHHHHT--------CCEEEEBCSSSCBSHHHHHHHHHHHHHHC
T ss_pred EEEECCCchhccCcCHHHHHHHHHHhC--------CeEEEeccCCCCCCHHHHHHHHHHHHhhC
Confidence 9999999976433 2 23344443 359999999 9999999999999988753
No 24
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.90 E-value=9.6e-23 Score=130.69 Aligned_cols=125 Identities=25% Similarity=0.458 Sum_probs=100.3
Q ss_pred CCccccee--eEEEeCC--EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~--~~~~~~~--~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+ ..+..++ +.+.+|||||++.+...+..+++.+|++++|+|+++..+++.+..|+..+..... .++|+
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ 124 (196)
T 3tkl_A 46 ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNK 124 (196)
T ss_dssp CCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEE
T ss_pred CCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCE
Confidence 46666443 4455544 7899999999999999999999999999999999998888888888887765432 57999
Q ss_pred EEEeeCCCCCCCCCH-----HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALSK-----EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|+.+.... ..+...++ ++++++||++|+|++++|++|.+.+.+
T Consensus 125 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~g~gv~~l~~~l~~~i~~ 179 (196)
T 3tkl_A 125 LLVGNKCDLTTKKVVDYTTAKEFADSLG--------IPFLETSAKNATNVEQSFMTMAAEIKK 179 (196)
T ss_dssp EEEEECTTCTTTCCSCHHHHHHHHHHTT--------CCEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEEECcccccccccCHHHHHHHHHHcC--------CcEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 999999999765432 22333333 359999999999999999999998865
No 25
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=1.8e-23 Score=132.38 Aligned_cols=126 Identities=27% Similarity=0.486 Sum_probs=92.0
Q ss_pred CCcccceeeE--EEeC--CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMRK--VTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~~--~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++.++.. +..+ .+.+.+|||||++.+...+..+++.+|++++|+|++++.+++.+..|+..+..... .++|+
T Consensus 41 ~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~pi 119 (180)
T 2g6b_A 41 ISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVAL 119 (180)
T ss_dssp CCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEE
T ss_pred CCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcE
Confidence 5777766543 3333 46899999999999999999999999999999999998888888888887765432 67999
Q ss_pred EEEeeCCCCCCCCC--HH---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 78 LVLGNKIDKPEALS--KE---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 78 ivv~nK~D~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
++++||+|+.+... .. .+...++ ++++++||++|+|++++|+++.+.+.++
T Consensus 120 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 120 MLLGNKVDSAHERVVKREDGEKLAKEYG--------LPFMETSAKTGLNVDLAFTAIAKELKRR 175 (180)
T ss_dssp EEEEECCSTTSCCCSCHHHHHHHHHHHT--------CCEEECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred EEEEECcccCcccccCHHHHHHHHHHcC--------CeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999976432 22 2333333 3599999999999999999999988653
No 26
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.90 E-value=1.6e-23 Score=130.96 Aligned_cols=129 Identities=22% Similarity=0.322 Sum_probs=97.6
Q ss_pred CCcccceee-EEEe--CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 2 IPTVGFNMR-KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 2 ~pt~~~~~~-~~~~--~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.||.+..+. .+.. +.+.+.+|||||++++...+..+++.+|++++|+|++++.+++....|+..+.......++|++
T Consensus 34 ~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii 113 (168)
T 1u8z_A 34 EPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL 113 (168)
T ss_dssp CTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEE
T ss_pred CCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 466665543 2333 3478999999999999999999999999999999999998898888888888765444679999
Q ss_pred EEeeCCCCCCCCC--HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 79 VLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 79 vv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++||+|+.+... ..+....... .+++++++||++|+|++++|+++.+.+.+
T Consensus 114 lv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 114 LVGNKSDLEDKRQVSVEEAKNRADQ-----WNVNYVETSAKTRANVDKVFFDLMREIRA 167 (168)
T ss_dssp EEEECGGGGGGCCSCHHHHHHHHHH-----HTCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred EEEECccccccCccCHHHHHHHHHH-----cCCeEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence 9999999965432 2222222211 12469999999999999999999998865
No 27
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.90 E-value=4.9e-24 Score=148.48 Aligned_cols=134 Identities=21% Similarity=0.312 Sum_probs=100.1
Q ss_pred CCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCC----------CCChHHHHHHHHHHhcCCC
Q 032598 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD----------YDNLPVSRSELHDLLSKPS 71 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~ 71 (137)
.||+|++...+..+++.+++|||+|+++++..|.+++++++++|+|+|+++ ..++.....|+..+.....
T Consensus 186 ~~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~ 265 (362)
T 1zcb_A 186 RPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRV 265 (362)
T ss_dssp CCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred CCccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchh
Confidence 578898888888899999999999999999999999999999999999999 5578888889998887655
Q ss_pred CCCCcEEEEeeCCCCCCC------------------CCHHHHHHHh-----CCCCCC-CCceeEEEeecccCCChHHHHH
Q 032598 72 LNGIPLLVLGNKIDKPEA------------------LSKEDLMEQM-----GLKSIT-DREVCCYMISCKNSTNIDTVID 127 (137)
Q Consensus 72 ~~~~p~ivv~nK~D~~~~------------------~~~~~~~~~~-----~~~~~~-~~~~~~~~~Sa~~~~~v~~~~~ 127 (137)
..++|+++++||+|+.+. ....+....+ ...... .+.+.+++|||++++||+++|.
T Consensus 266 ~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~ 345 (362)
T 1zcb_A 266 FSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFR 345 (362)
T ss_dssp GTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHH
T ss_pred hCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHH
Confidence 578999999999998521 2233322211 111111 3467899999999999999999
Q ss_pred HHHHhhhh
Q 032598 128 WLVKHSKS 135 (137)
Q Consensus 128 ~i~~~~~~ 135 (137)
++.+.+.+
T Consensus 346 ~v~~~i~~ 353 (362)
T 1zcb_A 346 DVKDTILH 353 (362)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
No 28
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.90 E-value=6e-23 Score=131.03 Aligned_cols=123 Identities=15% Similarity=0.248 Sum_probs=95.1
Q ss_pred CCcccceeeEEEeCC--EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEE
Q 032598 2 IPTVGFNMRKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLV 79 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~--~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 79 (137)
.||.+.....+..++ +.+.+|||+|+++++ +++.+|++++|+|+++..+++.+..|+..+.......++|+++
T Consensus 50 ~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piil 124 (184)
T 3ihw_A 50 SPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVL 124 (184)
T ss_dssp CTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEE
T ss_pred CCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 466553334455444 778889999999887 7888999999999999999999889999987765446799999
Q ss_pred EeeCCCCCC--CC--CHH---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 80 LGNKIDKPE--AL--SKE---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 80 v~nK~D~~~--~~--~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
++||+|+.. .. ... ++...++ .+.++++||++|+|++++|+++++.+.++
T Consensus 125 v~nK~Dl~~~~~~~v~~~~~~~~~~~~~-------~~~~~e~Sa~~~~gv~~lf~~l~~~i~~~ 181 (184)
T 3ihw_A 125 VGTQDAISAANPRVIDDSRARKLSTDLK-------RCTYYETCATYGLNVERVFQDVAQKVVAL 181 (184)
T ss_dssp EEECTTCBTTBCCCSCHHHHHHHHHHTT-------TCEEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred EEECcccccccccccCHHHHHHHHHHcC-------CCeEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 999999842 22 222 2333332 24699999999999999999999988754
No 29
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.90 E-value=1.3e-23 Score=131.41 Aligned_cols=129 Identities=19% Similarity=0.242 Sum_probs=99.3
Q ss_pred CCcccceeeE-E--EeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 2 IPTVGFNMRK-V--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 2 ~pt~~~~~~~-~--~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.||++..+.. + +.+.+.+.+|||||++++...+..+++.+|++++|+|++++.+++.+..|+..+.......++|++
T Consensus 33 ~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii 112 (167)
T 1c1y_A 33 DPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMI 112 (167)
T ss_dssp CCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEE
T ss_pred CCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEE
Confidence 4677755442 2 234678999999999999999999999999999999999988888888888877664444689999
Q ss_pred EEeeCCCCCCCCC--HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 79 VLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 79 vv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+++||+|+.+... ..+....... ...++++++||++|+|++++|++|.+.+.
T Consensus 113 lv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 113 LVGNKCDLEDERVVGKEQGQNLARQ----WCNCAFLESSAKSKINVNEIFYDLVRQIN 166 (167)
T ss_dssp EEEECTTCGGGCCSCHHHHHHHHHH----TTSCEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred EEEECccccccccCCHHHHHHHHHH----ccCCcEEEecCCCCCCHHHHHHHHHHHHh
Confidence 9999999975433 2222221111 01346999999999999999999998875
No 30
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=2.7e-23 Score=133.07 Aligned_cols=129 Identities=22% Similarity=0.371 Sum_probs=100.7
Q ss_pred CCccccee--eEEEe--CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNM--RKVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~--~~~~~--~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+ ..+.. ..+.+.+|||||++.+...+..+++.+|++++|+|++++.++..+..|+..+.......++|+
T Consensus 45 ~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ 124 (195)
T 1x3s_A 45 AATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVN 124 (195)
T ss_dssp CCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEE
T ss_pred CCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcE
Confidence 57777444 33433 458899999999999999999999999999999999998888888899888877654568999
Q ss_pred EEEeeCCCCCCCC-CHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEAL-SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|+.... ...+....... .++.++++||++|+|++++|++|.+.+.+
T Consensus 125 ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 178 (195)
T 1x3s_A 125 MLVGNKIDKENREVDRNEGLKFARK-----HSMLFIEASAKTCDGVQCAFEELVEKIIQ 178 (195)
T ss_dssp EEEEECTTSSSCCSCHHHHHHHHHH-----TTCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred EEEEECCcCcccccCHHHHHHHHHH-----cCCEEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 9999999995432 22222222111 13469999999999999999999998764
No 31
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.90 E-value=9.5e-23 Score=130.29 Aligned_cols=126 Identities=26% Similarity=0.435 Sum_probs=100.8
Q ss_pred CCcccceee---EEEeC-----------CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHh
Q 032598 2 IPTVGFNMR---KVTKG-----------NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLL 67 (137)
Q Consensus 2 ~pt~~~~~~---~~~~~-----------~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~ 67 (137)
.||++.++. .+... .+.+.+|||||++.+...+..+++.+|++++|+|++++.+++.+..|+..+.
T Consensus 41 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~ 120 (195)
T 3bc1_A 41 ITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQ 120 (195)
T ss_dssp CCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred ccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 577775554 33333 4799999999999999999999999999999999999888888888888887
Q ss_pred cCCCCCCCcEEEEeeCCCCCCCCC--HH---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 68 SKPSLNGIPLLVLGNKIDKPEALS--KE---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 68 ~~~~~~~~p~ivv~nK~D~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
......++|+++++||+|+.+... .. ++...++ +.++++||++|+|++++|++|.+.+.+
T Consensus 121 ~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 121 MHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYG--------IPYFETSAANGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp HHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHT--------CCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcC--------CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 654446799999999999975332 22 2333333 359999999999999999999988764
No 32
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.90 E-value=1.9e-23 Score=132.58 Aligned_cols=128 Identities=19% Similarity=0.235 Sum_probs=100.0
Q ss_pred CCCcccceee-EEEeCC--EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 1 MIPTVGFNMR-KVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 1 ~~pt~~~~~~-~~~~~~--~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
+.||++..+. .+..++ +.+.+|||||++.+...+..+++.+|++++|+|+++..+++.+..|+..+.......++|+
T Consensus 35 ~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ 114 (181)
T 3t5g_A 35 YDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPI 114 (181)
T ss_dssp CCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCE
T ss_pred CCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 3577775543 334444 7889999999999998899999999999999999999999999999888877655568999
Q ss_pred EEEeeCCCCCCCCCH--H---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 78 LVLGNKIDKPEALSK--E---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 78 ivv~nK~D~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
++++||+|+.+.... . .+...+ ++.++++||++|+|++++|+++.+.+.++
T Consensus 115 ilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 170 (181)
T 3t5g_A 115 MLVGNKKDLHMERVISYEEGKALAESW--------NAAFLESSAKENQTAVDVFRRIILEAEKM 170 (181)
T ss_dssp EEEEECTTCTTTCCSCHHHHHHHHHHT--------TCEEEECCTTSHHHHHHHHHHHHHHHHTC
T ss_pred EEEEECccchhcceecHHHHHHHHHHh--------CCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 999999999654432 2 233333 33699999999999999999999988754
No 33
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.89 E-value=1.2e-23 Score=135.79 Aligned_cols=127 Identities=19% Similarity=0.242 Sum_probs=98.3
Q ss_pred CCcccceeeE---EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 2 IPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 2 ~pt~~~~~~~---~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.||++..+.. ++.+.+.+.+|||||++.+...+..+++.+|++++|+|+++..+++.+..|+..+.......++|++
T Consensus 54 ~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii 133 (201)
T 3oes_A 54 DPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVV 133 (201)
T ss_dssp CCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEE
T ss_pred CCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 4677744432 3456799999999999999999999999999999999999999999999999998876555689999
Q ss_pred EEeeCCCCCCCCCH-----HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 79 VLGNKIDKPEALSK-----EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 79 vv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
+|+||+|+.+.... ..+...++ +.++++||++|.|++++|++|.+.+.+.
T Consensus 134 lv~nK~Dl~~~~~v~~~~~~~~~~~~~--------~~~~~~Sa~~~~~v~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 134 LVGNKADLSPEREVQAVEGKKLAESWG--------ATFMESSARENQLTQGIFTKVIQEIARV 188 (201)
T ss_dssp EEEECTTCGGGCCSCHHHHHHHHHHHT--------CEEEECCTTCHHHHHHHHHHHHHHHHHC
T ss_pred EEEECccCccccccCHHHHHHHHHHhC--------CeEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 99999998754432 22333333 3699999999999999999999988653
No 34
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.89 E-value=6.7e-23 Score=128.55 Aligned_cols=115 Identities=17% Similarity=0.215 Sum_probs=88.7
Q ss_pred CCEEEEEEecCCccccHH-hHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--
Q 032598 15 GNVTIKLWDLGGQPRFRS-MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-- 91 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~-~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-- 91 (137)
..+.+.+|||||++.+.. .+..+++.+|++++|+|++++++++.+..|+..+.......++|+++++||+|+.+...
T Consensus 49 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~ 128 (169)
T 3q85_A 49 EEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVS 128 (169)
T ss_dssp EEEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSC
T ss_pred eEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCC
Confidence 347889999999998876 77778999999999999999999999999998887754445899999999999974433
Q ss_pred HHH---HHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhcC
Q 032598 92 KED---LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSKS 137 (137)
Q Consensus 92 ~~~---~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~ 137 (137)
..+ +...+ ++.++++||++|+|++++|+++.+.+..+|
T Consensus 129 ~~~~~~~~~~~--------~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~r 169 (169)
T 3q85_A 129 LEEGRHLAGTL--------SCKHIETSAALHHNTRELFEGAVRQIRLRR 169 (169)
T ss_dssp HHHHHHHHHHT--------TCEEEECBTTTTBSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHc--------CCcEEEecCccCCCHHHHHHHHHHHHHhcC
Confidence 222 22233 346999999999999999999999988764
No 35
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.89 E-value=9.7e-24 Score=148.25 Aligned_cols=134 Identities=18% Similarity=0.212 Sum_probs=105.6
Q ss_pred CCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCC----------CCChHHHHHHHHHHhcCCC
Q 032598 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD----------YDNLPVSRSELHDLLSKPS 71 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~ 71 (137)
.||+|++...+..+++.+++|||+|++++++.|..|+++++++|+|+|+++ ..+++....|+..+.....
T Consensus 202 ~~TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~ 281 (402)
T 1azs_C 202 VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRW 281 (402)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTT
T ss_pred cceeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhccc
Confidence 468888888888889999999999999999999999999999999999999 7889999999999987655
Q ss_pred CCCCcEEEEeeCCCCCCCC------C-------------------------HHHHHHHh-----C----CCCCCCCceeE
Q 032598 72 LNGIPLLVLGNKIDKPEAL------S-------------------------KEDLMEQM-----G----LKSITDREVCC 111 (137)
Q Consensus 72 ~~~~p~ivv~nK~D~~~~~------~-------------------------~~~~~~~~-----~----~~~~~~~~~~~ 111 (137)
..++|+++++||+|+.... + ..+....+ . ......+.+.+
T Consensus 282 ~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~ 361 (402)
T 1azs_C 282 LRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYP 361 (402)
T ss_dssp CSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEE
T ss_pred CCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEE
Confidence 6789999999999974210 0 00111111 0 00001135678
Q ss_pred EEeecccCCChHHHHHHHHHhhhh
Q 032598 112 YMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 112 ~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++|||++++||+++|.++.+.+.+
T Consensus 362 ~~TSA~d~~nV~~vF~~v~~~I~~ 385 (402)
T 1azs_C 362 HFTCAVDTENIRRVFNDCRDIIQR 385 (402)
T ss_dssp EECCTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeecCcCHHHHHHHHHHHHHH
Confidence 999999999999999999888764
No 36
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=1e-22 Score=131.79 Aligned_cols=125 Identities=25% Similarity=0.380 Sum_probs=98.3
Q ss_pred CCccccee--eEEEeCC--EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~--~~~~~~~--~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++.++ ..+..++ +.+.+|||||++++...+..+++.+|++++|+|+++..+++.+..|+..+.... ..++|+
T Consensus 56 ~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~pi 134 (201)
T 2ew1_A 56 GATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA-SNKVIT 134 (201)
T ss_dssp CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEE
T ss_pred CCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCE
Confidence 47777444 3444444 789999999999999999999999999999999999888888888888776542 257999
Q ss_pred EEEeeCCCCCCCCC--HHH---HHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALS--KED---LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++|+||+|+.+... ..+ +.... ++.++++||++|+|++++|+++.+.+.+
T Consensus 135 ilv~NK~Dl~~~~~v~~~~~~~~~~~~--------~~~~~~~Sa~~g~gv~~l~~~l~~~i~~ 189 (201)
T 2ew1_A 135 VLVGNKIDLAERREVSQQRAEEFSEAQ--------DMYYLETSAKESDNVEKLFLDLACRLIS 189 (201)
T ss_dssp EEEEECGGGGGGCSSCHHHHHHHHHHH--------TCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEEECCCCccccccCHHHHHHHHHHc--------CCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999965432 222 22222 2359999999999999999999988754
No 37
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.89 E-value=1.8e-23 Score=132.91 Aligned_cols=125 Identities=25% Similarity=0.441 Sum_probs=85.3
Q ss_pred CCccccee--eEEEeCC--EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~--~~~~~~~--~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+ ..+..++ +.+.+|||||++.+...+..+++.+|++++|+|++++.+++.+..|+..+.... ..++|+
T Consensus 38 ~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~pi 116 (183)
T 2fu5_C 38 ISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHA-SADVEK 116 (183)
T ss_dssp HHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEE
T ss_pred CCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCE
Confidence 36666443 3455444 899999999999999999999999999999999999888888888888876532 257999
Q ss_pred EEEeeCCCCCCCCC--HH---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALS--KE---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|+.+... .. .+...++ ++++++||++|+|++++|.+|.+.+.+
T Consensus 117 ilv~nK~Dl~~~~~v~~~~~~~~~~~~~--------~~~~~~Sa~~~~~i~~l~~~l~~~i~~ 171 (183)
T 2fu5_C 117 MILGNKCDVNDKRQVSKERGEKLALDYG--------IKFMETSAKANINVENAFFTLARDIKA 171 (183)
T ss_dssp EEEEEC--CCSCCCSCHHHHHHHHHHHT--------CEEEECCC---CCHHHHHHHHHHHHHH
T ss_pred EEEEECccCCccCcCCHHHHHHHHHHcC--------CeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999976433 22 2233332 469999999999999999999988764
No 38
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.89 E-value=2e-24 Score=135.39 Aligned_cols=125 Identities=26% Similarity=0.396 Sum_probs=98.4
Q ss_pred CCccccee--eEEEe--CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNM--RKVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~--~~~~~--~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+ ..+.. ..+.+.+|||||++.+...+..+++.+|++++|+|++++.+++....|+..+.... ..++|+
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi 111 (170)
T 1ek0_A 33 EPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQA-SKDIII 111 (170)
T ss_dssp CCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEE
T ss_pred CCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhc-CCCCcE
Confidence 57777443 33433 35789999999999999999999999999999999999988988888888876543 257999
Q ss_pred EEEeeCCCCCCC---CC--HH---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEA---LS--KE---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~---~~--~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|+... .. .. ++.... +++++++||++|.|++++|++|.+.+.+
T Consensus 112 ilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~--------~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 169 (170)
T 1ek0_A 112 ALVGNKIDXLQEGGERKVAREEGEKLAEEK--------GLLFFETSAKTGENVNDVFLGIGEKIPL 169 (170)
T ss_dssp EEEEECGGGGGSSCCCCSCHHHHHHHHHHH--------TCEEEECCTTTCTTHHHHHHHHHTTSCC
T ss_pred EEEEECCCccccccccCCCHHHHHHHHHHc--------CCEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 999999998654 21 11 222222 2469999999999999999999988754
No 39
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.89 E-value=6.2e-23 Score=132.53 Aligned_cols=129 Identities=21% Similarity=0.317 Sum_probs=100.9
Q ss_pred CCccccee-eEEEeC--CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 2 IPTVGFNM-RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 2 ~pt~~~~~-~~~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.||++..+ ..+..+ .+.+.+|||||++.+...+..+++.+|++++|+|+++..+++.+..|+..+.......++|++
T Consensus 44 ~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii 123 (206)
T 2bov_A 44 EPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL 123 (206)
T ss_dssp CTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEE
T ss_pred CCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 46777544 334433 368999999999999999999999999999999999998999988898888775544689999
Q ss_pred EEeeCCCCCCCCC--HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 79 VLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 79 vv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++||+|+.+... ..+....... .+++++++||++|+|++++|++|.+.+.+
T Consensus 124 lv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 124 LVGNKSDLEDKRQVSVEEAKNRAEQ-----WNVNYVETSAKTRANVDKVFFDLMREIRA 177 (206)
T ss_dssp EEEECTTCGGGCCSCHHHHHHHHHH-----HTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEeccCccccccccHHHHHHHHHH-----hCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999975432 2222222211 12369999999999999999999988754
No 40
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.89 E-value=1.5e-22 Score=129.43 Aligned_cols=126 Identities=29% Similarity=0.480 Sum_probs=96.8
Q ss_pred CCccccee--eEEEeCC--EEEEEEecCCccccH-HhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 2 IPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFR-SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 2 ~pt~~~~~--~~~~~~~--~~~~~~Dt~g~~~~~-~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
.||++.++ ..+..++ +.+.+|||||++++. ..+..+++.+|++++|+|+++..+++.+..|+..+.......++|
T Consensus 50 ~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~p 129 (189)
T 1z06_A 50 EATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIP 129 (189)
T ss_dssp CCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCC
T ss_pred CCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 46777444 3454444 789999999999998 889999999999999999999888888888988887765456899
Q ss_pred EEEEeeCCCCCCCCC--HH---HHHHHhCCCCCCCCceeEEEeecccC---CChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALS--KE---DLMEQMGLKSITDREVCCYMISCKNS---TNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~---~~v~~~~~~i~~~~~~ 135 (137)
+++++||+|+.+... .. .+....+ +.++++||++| +|++++|++|++.+.+
T Consensus 130 iilv~nK~Dl~~~~~v~~~~~~~~~~~~~--------~~~~~~Sa~~~~~~~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 130 RILVGNKCDLRSAIQVPTDLAQKFADTHS--------MPLFETSAKNPNDNDHVEAIFMTLAHKLKS 188 (189)
T ss_dssp EEEEEECTTCGGGCCSCHHHHHHHHHHTT--------CCEEECCSSSGGGGSCHHHHHHHHC-----
T ss_pred EEEEEECccccccceeCHHHHHHHHHHcC--------CEEEEEeCCcCCcccCHHHHHHHHHHHHhh
Confidence 999999999965432 22 2222222 35999999999 9999999999887754
No 41
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.89 E-value=3.1e-23 Score=131.82 Aligned_cols=129 Identities=22% Similarity=0.322 Sum_probs=100.7
Q ss_pred CCcccceee-EEEeC--CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 2 IPTVGFNMR-KVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 2 ~pt~~~~~~-~~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.||++..+. .+... .+.+.+|||||++.+...+..+++.+|++++|+|+++..+++.+..|+..+.......++|++
T Consensus 48 ~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii 127 (187)
T 2a9k_A 48 EPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL 127 (187)
T ss_dssp CTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEE
T ss_pred CCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 466665443 23333 468999999999999999999999999999999999998888888888888765444589999
Q ss_pred EEeeCCCCCCCCC--HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 79 VLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 79 vv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+|+||+|+.+... ..+....... .+++++++||++|+|++++|++|.+.+.+
T Consensus 128 lv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 181 (187)
T 2a9k_A 128 LVGNKSDLEDKRQVSVEEAKNRAEQ-----WNVNYVETSAKTRANVDKVFFDLMREIRA 181 (187)
T ss_dssp EEEECGGGGGGCCSCHHHHHHHHHH-----TTCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEECccccccCccCHHHHHHHHHH-----cCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999865432 2332222211 13469999999999999999999998865
No 42
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.89 E-value=9.9e-23 Score=131.16 Aligned_cols=114 Identities=17% Similarity=0.222 Sum_probs=92.0
Q ss_pred CCEEEEEEecCCccccHH-hHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--
Q 032598 15 GNVTIKLWDLGGQPRFRS-MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-- 91 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~-~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-- 91 (137)
..+.+.+|||+|++++.. ++..+++.+|++++|+|+++..+++.+..|+..+.......++|+++++||+|+.+...
T Consensus 70 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~ 149 (195)
T 3cbq_A 70 EEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVS 149 (195)
T ss_dssp EEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSC
T ss_pred EEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcC
Confidence 357889999999988765 77888999999999999999999999999988886643335799999999999975433
Q ss_pred HHH---HHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 92 KED---LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 92 ~~~---~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
..+ +...+ ++.++++||++|.|++++|+++++.+.++
T Consensus 150 ~~~~~~~a~~~--------~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~ 189 (195)
T 3cbq_A 150 LEEGRHLAGTL--------SCKHIETSAALHHNTRELFEGAVRQIRLR 189 (195)
T ss_dssp HHHHHHHHHHT--------TCEEEEEBTTTTBSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHh--------CCEEEEEcCCCCCCHHHHHHHHHHHHHHh
Confidence 222 22222 24699999999999999999999988653
No 43
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.89 E-value=1.3e-23 Score=137.10 Aligned_cols=126 Identities=18% Similarity=0.236 Sum_probs=99.6
Q ss_pred CCCcccceeeE---EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHH-HHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPV-SRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~~---~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~p 76 (137)
+.||++..+.. ++...+.+.+|||+|++++..++..+++.+|++++|+|+++..+++. ...|+..+... ..++|
T Consensus 56 ~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~p 133 (214)
T 3q3j_B 56 YVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDY--CPSTR 133 (214)
T ss_dssp CCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHH--CTTSE
T ss_pred cCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHh--CCCCC
Confidence 46888866642 34556899999999999999999999999999999999999999988 67888877654 25799
Q ss_pred EEEEeeCCCCCCC--------------CCH---HHHHHHhCCCCCCCCceeEEEeecccCCC-hHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEA--------------LSK---EDLMEQMGLKSITDREVCCYMISCKNSTN-IDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~--------------~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~-v~~~~~~i~~~~~~ 135 (137)
+++|+||+|+.+. ... ..+...++. ..++++||++|+| ++++|+++++.+.+
T Consensus 134 iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-------~~~~e~SA~~g~g~v~~lf~~l~~~~~~ 203 (214)
T 3q3j_B 134 VLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGA-------EIYLEGSAFTSEKSIHSIFRTASMLCLN 203 (214)
T ss_dssp EEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTC-------SEEEECCTTTCHHHHHHHHHHHHHHHHC
T ss_pred EEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCC-------CEEEEeccCCCcccHHHHHHHHHHHHhc
Confidence 9999999999652 222 223333332 1599999999998 99999999998764
No 44
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.89 E-value=6.7e-23 Score=133.61 Aligned_cols=112 Identities=21% Similarity=0.428 Sum_probs=92.5
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HH
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KE 93 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~ 93 (137)
.+.+.+|||||++++...+..+++.+|++++|+|+++..+++.+..|+..+.......++|+++|+||+|+..... ..
T Consensus 83 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~ 162 (217)
T 2f7s_A 83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNER 162 (217)
T ss_dssp EEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHH
T ss_pred eEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHH
Confidence 6789999999999999999999999999999999999888888888887776554346899999999999975433 22
Q ss_pred ---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 94 ---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 94 ---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++...++ +.++++||++|+|++++|++|.+.+.+
T Consensus 163 ~~~~~~~~~~--------~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 163 QARELADKYG--------IPYFETSAATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp HHHHHHHHTT--------CCEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC--------CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 2233332 359999999999999999999988754
No 45
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=2.4e-22 Score=128.83 Aligned_cols=129 Identities=24% Similarity=0.320 Sum_probs=100.7
Q ss_pred CCCcccceeeE--EE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMRK--VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~~--~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
+.||+|.++.. +. .....+.+|||||++++...+..+++.+|++++|+|+++..+++.+..|+..+.... ..++|
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~-~~~~p 130 (192)
T 2fg5_A 52 ISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHG-PENIV 130 (192)
T ss_dssp CCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHS-CTTCE
T ss_pred cCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCc
Confidence 35777755432 33 356899999999999999999999999999999999999999998888888876542 35799
Q ss_pred EEEEeeCCCCCCCC--CHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++|+||+|+.+.. ...+....... .++.++++||++|+|++++|++|.+.+.+
T Consensus 131 iiiv~NK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 131 MAIAGNKCDLSDIREVPLKDAKEYAES-----IGAIVVETSAKNAINIEELFQGISRQIPP 186 (192)
T ss_dssp EEEEEECGGGGGGCCSCHHHHHHHHHT-----TTCEEEECBTTTTBSHHHHHHHHHHTCC-
T ss_pred EEEEEECcccccccccCHHHHHHHHHH-----cCCEEEEEeCCCCcCHHHHHHHHHHHHHh
Confidence 99999999996532 23333332221 23569999999999999999999988764
No 46
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.89 E-value=2.8e-23 Score=131.45 Aligned_cols=130 Identities=21% Similarity=0.312 Sum_probs=100.4
Q ss_pred CCcccceee-EEEeC--CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 2 IPTVGFNMR-KVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 2 ~pt~~~~~~-~~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.||++..+. .+..+ .+.+.+|||||++++...+..+++.+|++++|+|+++..+++.+..|+..+.......++|++
T Consensus 39 ~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii 118 (181)
T 2fn4_A 39 DPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVV 118 (181)
T ss_dssp CTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEE
T ss_pred CCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 567775544 34444 378999999999999999999999999999999999988888888888888654444679999
Q ss_pred EEeeCCCCCCCCCH-HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 79 VLGNKIDKPEALSK-EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 79 vv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++||+|+.+.... .+....+.. ..++.++++||++|+|++++|++|.+.+.+
T Consensus 119 lv~nK~Dl~~~~~v~~~~~~~~~~----~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 172 (181)
T 2fn4_A 119 LVGNKADLESQRQVPRSEASAFGA----SHHVAYFEASAKLRLNVDEAFEQLVRAVRK 172 (181)
T ss_dssp EEEECGGGGGGCCSCHHHHHHHHH----HTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEECcccccccccCHHHHHHHHH----HcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 99999999754332 111122210 113469999999999999999999998864
No 47
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.89 E-value=2.1e-22 Score=129.16 Aligned_cols=130 Identities=22% Similarity=0.306 Sum_probs=98.9
Q ss_pred CCccccee--eEEEeC--CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNM--RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~--~~~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+ ..+..+ .+.+.+|||||++++...+..+++.+|++++|+|+++..+++.+..|+..+... ...++|+
T Consensus 56 ~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~-~~~~~pi 134 (192)
T 2il1_A 56 KSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKY-ASEDAEL 134 (192)
T ss_dssp -CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEE
T ss_pred CCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcE
Confidence 46776443 345444 478999999999999999999999999999999999988888888887766543 2257999
Q ss_pred EEEeeCCCCCCCCC--HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 78 LVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 78 ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
++|+||+|+.+... ..+....... ...+.++++||++|+|++++|++|.+.+.++
T Consensus 135 ilV~NK~Dl~~~~~v~~~~~~~~~~~----~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~ 191 (192)
T 2il1_A 135 LLVGNKLDCETDREITRQQGEKFAQQ----ITGMRFCEASAKDNFNVDEIFLKLVDDILKK 191 (192)
T ss_dssp EEEEECGGGGGGCCSCHHHHHHHHHT----STTCEEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred EEEEECcccccccccCHHHHHHHHHh----cCCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999975433 2222222111 1245799999999999999999999988653
No 48
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.89 E-value=1.4e-22 Score=128.41 Aligned_cols=128 Identities=20% Similarity=0.306 Sum_probs=99.2
Q ss_pred CCcccceee--EEEe--CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMR--KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~--~~~~--~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+. .+.. ....+.+|||||++++...+..+++.+|++++|+|+++..+++....|+..+.... ..++|+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ 120 (181)
T 2efe_B 42 ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQG-NPNMVM 120 (181)
T ss_dssp CCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEE
T ss_pred CCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcE
Confidence 467774443 3433 35789999999999999999999999999999999999888888888888877643 257999
Q ss_pred EEEeeCCCCCCCCC--HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|+.+... ..+....... .+++++++||++|+|++++|++|.+.+.+
T Consensus 121 i~v~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 121 ALAGNKSDLLDARKVTAEDAQTYAQE-----NGLFFMETSAKTATNVKEIFYEIARRLPR 175 (181)
T ss_dssp EEEEECTTCTTTCCSCHHHHHHHHHH-----TTCEEEECCSSSCTTHHHHHHHHHHTCC-
T ss_pred EEEEECCcccccccCCHHHHHHHHHH-----cCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 99999999965433 2222222211 13469999999999999999999988764
No 49
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=4.3e-23 Score=132.17 Aligned_cols=124 Identities=23% Similarity=0.414 Sum_probs=99.2
Q ss_pred Ccccceee--EE--EeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 3 PTVGFNMR--KV--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 3 pt~~~~~~--~~--~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
||++..+. .+ ..+++.+.+|||||++.+...+..+++.+|++++|+|+++..+++.+..|+..+.... ..++|++
T Consensus 54 ~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~pii 132 (191)
T 3dz8_A 54 STVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYS-WDNAQVI 132 (191)
T ss_dssp EEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEE
T ss_pred CCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEE
Confidence 55664443 23 3467999999999999999999999999999999999999989988888888886632 3579999
Q ss_pred EEeeCCCCCCCCCH--H---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 79 VLGNKIDKPEALSK--E---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 79 vv~nK~D~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+|+||+|+.+.... . .+...++ +.++++||++|+|++++|++|.+.+.+
T Consensus 133 lv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 186 (191)
T 3dz8_A 133 LVGNKCDMEEERVVPTEKGQLLAEQLG--------FDFFEASAKENISVRQAFERLVDAICD 186 (191)
T ss_dssp EEEECTTCGGGCCSCHHHHHHHHHHHT--------CEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEECCCCccccccCHHHHHHHHHHcC--------CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 99999998654322 2 2333333 359999999999999999999998865
No 50
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.89 E-value=1.7e-22 Score=128.66 Aligned_cols=126 Identities=20% Similarity=0.323 Sum_probs=96.7
Q ss_pred CCcccceee-EEEe--CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 2 IPTVGFNMR-KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 2 ~pt~~~~~~-~~~~--~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.||.+..+. .+.. ..+.+.+|||||++.+...+..+++.+|++++|+|+++..+++.+..|+..+.......++|++
T Consensus 34 ~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i 113 (189)
T 4dsu_A 34 DPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV 113 (189)
T ss_dssp CTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEE
T ss_pred CCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 355553332 2333 3466889999999999999999999999999999999998899988898888775555789999
Q ss_pred EEeeCCCCCCCCCH----HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 79 VLGNKIDKPEALSK----EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 79 vv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++||+|+.+.... ..+...++ ++++++||++|+|++++|++|.+.+.+
T Consensus 114 ~v~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 166 (189)
T 4dsu_A 114 LVGNKCDLPSRTVDTKQAQDLARSYG--------IPFIETSAKTRQGVDDAFYTLVREIRK 166 (189)
T ss_dssp EEEECTTSSSCSSCHHHHHHHHHHHT--------CCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEECccCcccccCHHHHHHHHHHcC--------CeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999754322 23333343 359999999999999999999998764
No 51
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.89 E-value=1.8e-22 Score=126.43 Aligned_cols=128 Identities=20% Similarity=0.295 Sum_probs=98.7
Q ss_pred CCcccceee--EEEe--CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMR--KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~--~~~~--~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+. .+.. .++.+.+|||||++++...+..+++.+|++++|+|++++.+++....|+..+.... ..++|+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~i 114 (170)
T 1r2q_A 36 ESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-SPNIVI 114 (170)
T ss_dssp CCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEE
T ss_pred CCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcE
Confidence 467774443 3333 36789999999999999999999999999999999999888888888888776542 257999
Q ss_pred EEEeeCCCCCCCCC--HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|+.+... ..+....... ..+.++++||++|+|++++|++|.+.+.+
T Consensus 115 ilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~g~gi~~l~~~i~~~~~~ 169 (170)
T 1r2q_A 115 ALSGNKADLANKRAVDFQEAQSYADD-----NSLLFMETSAKTSMNVNEIFMAIAKKLPK 169 (170)
T ss_dssp EEEEECGGGGGGCCSCHHHHHHHHHH-----TTCEEEECCTTTCTTHHHHHHHHHHTSCC
T ss_pred EEEEECccCccccccCHHHHHHHHHH-----cCCeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 99999999865432 2222222111 13469999999999999999999987754
No 52
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.89 E-value=3.2e-22 Score=126.33 Aligned_cols=128 Identities=20% Similarity=0.270 Sum_probs=98.3
Q ss_pred CCccccee--eEEEe--CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNM--RKVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~--~~~~~--~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+ ..+.. ..+.+.+|||||++.+...+..+++.+|++++|+|+++..+++.+..|+..+.... ..++|+
T Consensus 45 ~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi 123 (179)
T 1z0f_A 45 PHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVI 123 (179)
T ss_dssp TTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEE
T ss_pred CCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhc-CCCCcE
Confidence 46676443 33443 34789999999999999999999999999999999999888888888887776542 257999
Q ss_pred EEEeeCCCCCCCCC--HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|+.+... ..+....... .++.++++||++|+|++++|+++.+.+.+
T Consensus 124 ilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 124 ILIGNKADLEAQRDVTYEEAKQFAEE-----NGLLFLEASAKTGENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp EEEEECTTCGGGCCSCHHHHHHHHHH-----TTCEEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred EEEEECcccccccccCHHHHHHHHHH-----cCCEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 99999999965432 2222222211 13469999999999999999999998764
No 53
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.89 E-value=9e-23 Score=128.95 Aligned_cols=127 Identities=20% Similarity=0.348 Sum_probs=97.7
Q ss_pred CCcccc--eeeEEEeCC---EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCC-CCCC
Q 032598 2 IPTVGF--NMRKVTKGN---VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPS-LNGI 75 (137)
Q Consensus 2 ~pt~~~--~~~~~~~~~---~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~ 75 (137)
.||++. ....+...+ +.+.+|||||++.+...+..+++.+|++++|+|++++.+++.+..|+..+..... ..+.
T Consensus 36 ~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ 115 (178)
T 2hxs_A 36 KQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQ 115 (178)
T ss_dssp HHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCC
T ss_pred CCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCC
Confidence 477773 345566544 8999999999999999999999999999999999998888888888877754211 1134
Q ss_pred c-EEEEeeCCCCCCCCC--HH---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 76 P-LLVLGNKIDKPEALS--KE---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 76 p-~ivv~nK~D~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
| +++++||+|+.+... .. .+...++ ++++++||++|+|++++|++|.+.+.+.
T Consensus 116 ~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 116 PLVALVGNKIDLEHMRTIKPEKHLRFCQENG--------FSSHFVSAKTGDSVFLCFQKVAAEILGI 174 (178)
T ss_dssp CEEEEEEECGGGGGGCSSCHHHHHHHHHHHT--------CEEEEECTTTCTTHHHHHHHHHHHHTTC
T ss_pred CeEEEEEEccccccccccCHHHHHHHHHHcC--------CcEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 5 899999999975432 22 2233332 4699999999999999999999988654
No 54
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.89 E-value=3.1e-22 Score=129.19 Aligned_cols=125 Identities=18% Similarity=0.412 Sum_probs=99.3
Q ss_pred CCcccceee--EEEe--CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMR--KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~--~~~~--~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||+|..+. .+.. ..+.+.+|||||++++...+..+++.+|++++|+|+++..+++.+..|+..+.... ..++|+
T Consensus 38 ~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~pi 116 (203)
T 1zbd_A 38 VSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV 116 (203)
T ss_dssp CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CSSCEE
T ss_pred CCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCE
Confidence 577774443 3433 35799999999999999999999999999999999999888888888888776542 357999
Q ss_pred EEEeeCCCCCCCCCH-----HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALSK-----EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++|+||+|+.+.... ..+...++ +.++++||++|.|++++|++|.+.+.+
T Consensus 117 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 171 (203)
T 1zbd_A 117 LLVGNKCDMEDERVVSSERGRQLADHLG--------FEFFEASAKDNINVKQTFERLVDVICE 171 (203)
T ss_dssp EEEEECTTCTTSCCSCHHHHHHHHHHHT--------CEEEECBTTTTBSSHHHHHHHHHHHHH
T ss_pred EEEEECcccCcccccCHHHHHHHHHHCC--------CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 999999999764332 22333333 369999999999999999999988754
No 55
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.89 E-value=1.4e-22 Score=129.74 Aligned_cols=125 Identities=22% Similarity=0.333 Sum_probs=96.7
Q ss_pred CCccccee--eEEEeC--CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNM--RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~--~~~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+ ..+..+ .+.+.+|||||++++...+..+++.+|++++|+|+++..+++.+..|+..+.... ..++|+
T Consensus 51 ~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~-~~~~pi 129 (191)
T 2a5j_A 51 DLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS-SSNMVI 129 (191)
T ss_dssp ---CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEE
T ss_pred CCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCE
Confidence 36666443 345444 4789999999999999999999999999999999999888888888888876532 257999
Q ss_pred EEEeeCCCCCCCCC--HH---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALS--KE---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|+.+... .. .+.... ++.++++||++|+|++++|++|++.+.+
T Consensus 130 ilv~nK~Dl~~~~~v~~~~~~~~~~~~--------~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 184 (191)
T 2a5j_A 130 MLIGNKSDLESRRDVKREEGEAFAREH--------GLIFMETSAKTACNVEEAFINTAKEIYR 184 (191)
T ss_dssp EEEEECTTCGGGCCSCHHHHHHHHHHH--------TCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEEECcccCCccccCHHHHHHHHHHc--------CCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999965332 22 222222 2469999999999999999999988764
No 56
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.89 E-value=6.2e-22 Score=124.96 Aligned_cols=131 Identities=22% Similarity=0.385 Sum_probs=98.6
Q ss_pred CCccccee--eEEEeCC--EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCC---CCCC
Q 032598 2 IPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKP---SLNG 74 (137)
Q Consensus 2 ~pt~~~~~--~~~~~~~--~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~ 74 (137)
.||++.++ ..+..++ +.+.+|||||++.+...+..+++.+|++++|+|+++..+++.+..|+..+.... ...+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 116 (177)
T 1wms_A 37 FHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPES 116 (177)
T ss_dssp --CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTT
T ss_pred CCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCC
Confidence 47777554 3444444 799999999999999999999999999999999999888888888887775432 2367
Q ss_pred CcEEEEeeCCCCCCCC-CHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 75 IPLLVLGNKIDKPEAL-SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 75 ~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
+|+++++||+|+.+.. ...+....... ...++++++||++|+|++++|+++.+.+.++
T Consensus 117 ~p~i~v~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 117 FPFVILGNKIDISERQVSTEEAQAWCRD----NGDYPYFETSAKDATNVAAAFEEAVRRVLAT 175 (177)
T ss_dssp SCEEEEEECTTCSSCSSCHHHHHHHHHH----TTCCCEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred CcEEEEEECCcccccccCHHHHHHHHHh----cCCceEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 8999999999996322 22333222210 1234699999999999999999999988754
No 57
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.89 E-value=1.1e-22 Score=128.07 Aligned_cols=125 Identities=18% Similarity=0.180 Sum_probs=90.3
Q ss_pred Cccccee--eEEEeC--CEEEEEEecCCccc--cHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 3 PTVGFNM--RKVTKG--NVTIKLWDLGGQPR--FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 3 pt~~~~~--~~~~~~--~~~~~~~Dt~g~~~--~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
||.|.+. ..+..+ .+.+.+|||||++. +..+...+++.++++++|+|++++.+++.+..|+..+.......++|
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~p 113 (175)
T 2nzj_A 34 EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVP 113 (175)
T ss_dssp CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CC
T ss_pred CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCC
Confidence 5566443 334433 46899999999987 56777888999999999999999999998888888877654446799
Q ss_pred EEEEeeCCCCCCCCCH--HH---HHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALSK--ED---LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++++||+|+.+.+.. .+ ....+ +++++++||++|+|++++|++|.+.+.+
T Consensus 114 iilv~NK~Dl~~~~~v~~~~~~~~~~~~--------~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 169 (175)
T 2nzj_A 114 IILVGNKADLARCREVSVEEGRACAVVF--------DCKFIETSATLQHNVAELFEGVVRQLRL 169 (175)
T ss_dssp EEEEEECTTCTTTCCSCHHHHHHHHHHH--------TSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEEEEChhhccccccCHHHHHHHHHHc--------CCeEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 9999999999765332 22 22222 2469999999999999999999998864
No 58
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.88 E-value=2.6e-22 Score=125.26 Aligned_cols=126 Identities=17% Similarity=0.294 Sum_probs=99.0
Q ss_pred CCccccee-eEEEeC--CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 2 IPTVGFNM-RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 2 ~pt~~~~~-~~~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.||++..+ ..+..+ ...+.+|||||++.+...+..+++.++++++|+|++++.+++.+..|+..+.......++|++
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii 112 (167)
T 1kao_A 33 DPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVI 112 (167)
T ss_dssp CTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEE
T ss_pred CCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 45666333 233333 466999999999999999999999999999999999988888888888888765545689999
Q ss_pred EEeeCCCCCCCCCH-----HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 79 VLGNKIDKPEALSK-----EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 79 vv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++||+|+.+.... ..+...++ ++++++||++|+|+++++++|.+.+.+
T Consensus 113 lv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 166 (167)
T 1kao_A 113 LVGNKVDLESEREVSSSEGRALAEEWG--------CPFMETSAKSKTMVDELFAEIVRQMNY 166 (167)
T ss_dssp EEEECGGGGGGCCSCHHHHHHHHHHHT--------SCEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEECCcccccccCCHHHHHHHHHHhC--------CCEEEecCCCCcCHHHHHHHHHHHHhh
Confidence 99999998654332 22333333 359999999999999999999988764
No 59
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.88 E-value=1.4e-22 Score=130.03 Aligned_cols=127 Identities=16% Similarity=0.247 Sum_probs=98.0
Q ss_pred CCCcccceeeE-EE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHH-HHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMRK-VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVS-RSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~~-~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p 76 (137)
+.||++..+.. +. ...+.+.+|||||++++...+..+++.+|++++|+|+++..+++.+ ..|...+... ..++|
T Consensus 52 ~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p 129 (194)
T 3reg_A 52 YVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHY--IDTAK 129 (194)
T ss_dssp CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTSE
T ss_pred cCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCC
Confidence 35788766543 33 3457789999999999999999999999999999999999888886 5676666543 35799
Q ss_pred EEEEeeCCCCCCC----CCHH---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 77 LLVLGNKIDKPEA----LSKE---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 77 ~ivv~nK~D~~~~----~~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
+++|+||+|+.+. .... ++...++.. .++++||++|+|++++|+++.+.+.++
T Consensus 130 ~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 130 TVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCV-------AYIEASSVAKIGLNEVFEKSVDCIFSN 189 (194)
T ss_dssp EEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCS-------CEEECBTTTTBSHHHHHHHHHHHHHCS
T ss_pred EEEEEEChhhccCCCCcccHHHHHHHHHhcCCC-------EEEEeecCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999753 1222 233333321 299999999999999999999988754
No 60
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.88 E-value=1.4e-22 Score=128.25 Aligned_cols=124 Identities=25% Similarity=0.479 Sum_probs=99.2
Q ss_pred CCccccee--eEEEeCC--EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~--~~~~~~~--~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+ ..+...+ +.+.+|||||++.+...+..+++.+|++++|+|++++.+++.+..|+..+... ..++|+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ 116 (181)
T 3tw8_B 39 ITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQN--CDDVCR 116 (181)
T ss_dssp TTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH--CTTSEE
T ss_pred CCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCCCE
Confidence 46666433 4455555 88999999999999999999999999999999999998999888888888653 257999
Q ss_pred EEEeeCCCCCCCCCH-----HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALSK-----EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++|+||+|+.+.... ......++ ++++++||++|+|++++|++|.+.+.+
T Consensus 117 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 171 (181)
T 3tw8_B 117 ILVGNKNDDPERKVVETEDAYKFAGQMG--------IQLFETSAKENVNVEEMFNCITELVLR 171 (181)
T ss_dssp EEEEECTTCGGGCCSCHHHHHHHHHHHT--------CCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCchhcccCHHHHHHHHHHcC--------CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 999999998754332 22333333 359999999999999999999998764
No 61
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.88 E-value=2.6e-22 Score=127.69 Aligned_cols=128 Identities=21% Similarity=0.304 Sum_probs=98.4
Q ss_pred CCccccee--eEEEeCC--EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~--~~~~~~~--~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+ ..+..++ +.+.+|||||++.+...+..+++.+|++++|+|++++.+++.+..|+..+..... .++|+
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~pi 118 (186)
T 2bme_A 40 NHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS-QNIVI 118 (186)
T ss_dssp CCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEE
T ss_pred CCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCcE
Confidence 46666443 3454444 7899999999999999999999999999999999998888888888877755322 57999
Q ss_pred EEEeeCCCCCCCCC--HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|+..... ..+...... ..++.++++||++|+|++++|+++.+.+.+
T Consensus 119 ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 173 (186)
T 2bme_A 119 ILCGNKKDLDADREVTFLEASRFAQ-----ENELMFLETSALTGENVEEAFVQCARKILN 173 (186)
T ss_dssp EEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEEECcccccccccCHHHHHHHHH-----HcCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 99999999964332 222222111 113469999999999999999999988754
No 62
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.88 E-value=7.7e-23 Score=132.16 Aligned_cols=129 Identities=16% Similarity=0.163 Sum_probs=86.5
Q ss_pred CCccc--ceeeEEEeC----CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCC--CC
Q 032598 2 IPTVG--FNMRKVTKG----NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPS--LN 73 (137)
Q Consensus 2 ~pt~~--~~~~~~~~~----~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~ 73 (137)
.||++ +....+..+ .+.+.+|||||++.+...+..+++.+|++++|+|++++.+++.+..|+..+..... ..
T Consensus 52 ~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~ 131 (208)
T 2yc2_C 52 AMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRER 131 (208)
T ss_dssp ---------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTS
T ss_pred CCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhccccc
Confidence 46776 344455544 57999999999999999999999999999999999999899998899888876432 25
Q ss_pred CCcEEEEeeCCCCCC-CCC--HHHHHHHhCCCCCCCCceeEEEeeccc-CCChHHHHHHHHHhhhh
Q 032598 74 GIPLLVLGNKIDKPE-ALS--KEDLMEQMGLKSITDREVCCYMISCKN-STNIDTVIDWLVKHSKS 135 (137)
Q Consensus 74 ~~p~ivv~nK~D~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~~v~~~~~~i~~~~~~ 135 (137)
++|+++|+||+|+.+ ... ..+....... .++.++++||++ |+|++++|++|.+.+.+
T Consensus 132 ~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~-----~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 132 PLRAVLVANKTDLPPQRHQVRLDMAQDWATT-----NTLDFFDVSANPPGKDADAPFLSIATTFYR 192 (208)
T ss_dssp CCEEEEEEECC-------CCCHHHHHHHHHH-----TTCEEEECCC-------CHHHHHHHHHHHH
T ss_pred CCcEEEEEECcccchhhccCCHHHHHHHHHH-----cCCEEEEeccCCCCcCHHHHHHHHHHHHHH
Confidence 799999999999976 322 2222222211 124699999999 99999999999987753
No 63
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.88 E-value=1.9e-23 Score=144.02 Aligned_cols=134 Identities=20% Similarity=0.275 Sum_probs=107.3
Q ss_pred CCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCC----------CCCChHHHHHHHHHHhcCCC
Q 032598 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAA----------DYDNLPVSRSELHDLLSKPS 71 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~ 71 (137)
.||+|++...+..+++.+++|||+|++++++.|.+|+++++++|+|+|++ +..++.+...|+..+.....
T Consensus 146 ~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~ 225 (340)
T 4fid_A 146 TKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEF 225 (340)
T ss_dssp CCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGG
T ss_pred cceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhc
Confidence 58899999999999999999999999999999999999999999999998 56678888888888887666
Q ss_pred CCCCcEEEEeeCCCCCCCC-----------------CHH----HHHHHh------C-CCCCCC-----------CceeEE
Q 032598 72 LNGIPLLVLGNKIDKPEAL-----------------SKE----DLMEQM------G-LKSITD-----------REVCCY 112 (137)
Q Consensus 72 ~~~~p~ivv~nK~D~~~~~-----------------~~~----~~~~~~------~-~~~~~~-----------~~~~~~ 112 (137)
..++|+++++||+|+.... ... .+...+ . ...... +.+.++
T Consensus 226 ~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h 305 (340)
T 4fid_A 226 LKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTN 305 (340)
T ss_dssp GTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEE
T ss_pred cCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEE
Confidence 6789999999999975311 111 122233 1 111111 468899
Q ss_pred EeecccCCChHHHHHHHHHhhhh
Q 032598 113 MISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 113 ~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+|||+++.||+.+|..+.+.+.+
T Consensus 306 ~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 306 PTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp EECTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEeeCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999988764
No 64
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=6e-23 Score=132.01 Aligned_cols=127 Identities=21% Similarity=0.226 Sum_probs=99.4
Q ss_pred CCCcccceeeE-EEe--CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 1 MIPTVGFNMRK-VTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 1 ~~pt~~~~~~~-~~~--~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
+.||++..+.. +.. +.+.+.+|||||++. ...+..+++.+|++++|+|++++.+++.+..|+..+.......++|+
T Consensus 57 ~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~pi 135 (196)
T 2atv_A 57 YDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTL 135 (196)
T ss_dssp CCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCE
T ss_pred cCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcE
Confidence 35777755543 333 357899999999988 78889999999999999999998889888888887766434468999
Q ss_pred EEEeeCCCCCCCCC--HH---HHHHHhCCCCCCCCceeEEEeecccCC-ChHHHHHHHHHhhhhc
Q 032598 78 LVLGNKIDKPEALS--KE---DLMEQMGLKSITDREVCCYMISCKNST-NIDTVIDWLVKHSKSK 136 (137)
Q Consensus 78 ivv~nK~D~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~v~~~~~~i~~~~~~~ 136 (137)
++++||+|+.+... .. ++...+ ++.++++||++|+ |++++|++|++.+.++
T Consensus 136 ilv~NK~Dl~~~~~v~~~~~~~~~~~~--------~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~~ 192 (196)
T 2atv_A 136 ILVGNKADLDHSRQVSTEEGEKLATEL--------ACAFYECSACTGEGNITEIFYELCREVRRR 192 (196)
T ss_dssp EEEEECGGGGGGCCSCHHHHHHHHHHH--------TSEEEECCTTTCTTCHHHHHHHHHHHHHHH
T ss_pred EEEEECcccccccccCHHHHHHHHHHh--------CCeEEEECCCcCCcCHHHHHHHHHHHHHhh
Confidence 99999999975432 22 223333 2469999999999 9999999999988653
No 65
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.88 E-value=4.3e-22 Score=128.83 Aligned_cols=128 Identities=23% Similarity=0.363 Sum_probs=99.1
Q ss_pred CCcccceee--EEEeC--CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMR--KVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~--~~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+. .+..+ .+.+.+|||||++++...+..+++.+|++++|+|++++.+++.+..|+..+.... ..++|+
T Consensus 38 ~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~pi 116 (206)
T 2bcg_Y 38 ISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA-TSTVLK 116 (206)
T ss_dssp CCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEE
T ss_pred CCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCE
Confidence 577775443 44444 4689999999999999999999999999999999999989998888888776543 257999
Q ss_pred EEEeeCCCCCCCCC--HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++|+||+|+.+... .......... .+++++++||++|+|++++|++|.+.+.+
T Consensus 117 ilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 117 LLVGNKCDLKDKRVVEYDVAKEFADA-----NKMPFLETSALDSTNVEDAFLTMARQIKE 171 (206)
T ss_dssp EEEEECTTCTTTCCSCHHHHHHHHHH-----TTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEEECCCCccccccCHHHHHHHHHH-----cCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999976432 2222211111 12359999999999999999999988754
No 66
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.88 E-value=6.9e-22 Score=123.86 Aligned_cols=128 Identities=21% Similarity=0.277 Sum_probs=98.0
Q ss_pred CCcccceee--EEEeC--CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMR--KVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~--~~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||+|..+. .+... ...+.+|||||++++...+..+++.+|++++|+|++++.+++....|+..+... ..+++|+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~i 114 (170)
T 1z0j_A 36 NPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQH-GPPSIVV 114 (170)
T ss_dssp CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTSEE
T ss_pred CCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCcE
Confidence 577774443 34433 488999999999999999999999999999999999988888888888877653 2367999
Q ss_pred EEEeeCCCCCCCCCH-HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 78 LVLGNKIDKPEALSK-EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 78 ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
++++||+|+.+.... .+....+.. ..+++++++||++|+|++++|+++.+.+.
T Consensus 115 ilv~nK~Dl~~~~~v~~~~~~~~~~----~~~~~~~~~Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 115 AIAGNKCDLTDVREVMERDAKDYAD----SIHAIFVETSAKNAININELFIEISRRIP 168 (170)
T ss_dssp EEEEECTTCGGGCCSCHHHHHHHHH----HTTCEEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred EEEEECCccccccccCHHHHHHHHH----HcCCEEEEEeCCCCcCHHHHHHHHHHHHh
Confidence 999999999754332 111111110 11346999999999999999999998775
No 67
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.88 E-value=1.7e-22 Score=130.16 Aligned_cols=126 Identities=21% Similarity=0.363 Sum_probs=91.5
Q ss_pred CCccccee--eEEEe--CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNM--RKVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~--~~~~~--~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||+|..+ ..+.. +.+.+.+|||||++++...+..+++.+|++++|+|+++..+++.+..|+..+.... ..++|+
T Consensus 58 ~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~pi 136 (199)
T 2p5s_A 58 SATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAA-HETVPI 136 (199)
T ss_dssp -------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC----CCE
T ss_pred CCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCCE
Confidence 46676443 33443 34789999999999999999999999999999999999888888888887775432 257899
Q ss_pred EEEeeCCCCCC------CCC--HH---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 78 LVLGNKIDKPE------ALS--KE---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 78 ivv~nK~D~~~------~~~--~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
++|+||+|+.+ ... .. .+.... ++.++++||++|+|++++|.+|++.+.++
T Consensus 137 ilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~--------~~~~~~~SA~~g~gv~el~~~l~~~i~~~ 198 (199)
T 2p5s_A 137 MLVGNKADIRDTAATEGQKCVPGHFGEKLAMTY--------GALFCETSAKDGSNIVEAVLHLAREVKKR 198 (199)
T ss_dssp EEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHH--------TCEEEECCTTTCTTHHHHHHHHHHHHTC-
T ss_pred EEEEECcccccccccccccccCHHHHHHHHHHc--------CCeEEEeeCCCCCCHHHHHHHHHHHHHhh
Confidence 99999999852 111 11 222222 34699999999999999999999988754
No 68
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.88 E-value=4.9e-22 Score=127.32 Aligned_cols=128 Identities=22% Similarity=0.325 Sum_probs=99.2
Q ss_pred CCcccceee--EEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMR--KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~--~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||+|..+. .+. ...+.+.+|||||++++...+..+++.+|++++|+|+++..++..+..|+..+.... ..++|+
T Consensus 55 ~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~-~~~~pi 133 (193)
T 2oil_A 55 RTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHA-EATIVV 133 (193)
T ss_dssp CCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTS-CTTCEE
T ss_pred CCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeE
Confidence 467775443 333 245889999999999999999999999999999999999888888888888886643 367999
Q ss_pred EEEeeCCCCCCCCC--HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|+..... ..+....... .++.++++||++|+|++++|++|.+.+.+
T Consensus 134 ilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 188 (193)
T 2oil_A 134 MLVGNKSDLSQAREVPTEEARMFAEN-----NGLLFLETSALDSTNVELAFETVLKEIFA 188 (193)
T ss_dssp EEEEECGGGGGGCCSCHHHHHHHHHH-----TTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEEECCCcccccccCHHHHHHHHHH-----cCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999975432 2222222111 13469999999999999999999988764
No 69
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.88 E-value=1.2e-22 Score=139.11 Aligned_cols=128 Identities=20% Similarity=0.202 Sum_probs=92.3
Q ss_pred CCcccceeeEEEeCCEEEEEEecCCccccHH---hHHHHhccCCEEEEEEeCCCCCChHHHHHHH----HHHhcCCCCCC
Q 032598 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS---MWERYCRAVSAIVYVVDAADYDNLPVSRSEL----HDLLSKPSLNG 74 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~---~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~----~~~~~~~~~~~ 74 (137)
.||+|.++..+ ...+++++|||+||++|+. .+..|+++++++++|+|+++. +.....|+ ..+... .++
T Consensus 32 ~~Tig~~~~~v-~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~--~~~~~~~l~~~l~~~~~~--~~~ 106 (331)
T 3r7w_B 32 ESTSNPSLEHF-STLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDE--YINAITNLAMIIEYAYKV--NPS 106 (331)
T ss_dssp CCCCSCCCEEE-CSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSC--TTHHHHHHHHHHHHHHHH--CTT
T ss_pred cCeeeeeeEEE-ccEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCch--HHHHHHHHHHHHHHHhhc--CCC
Confidence 58999888877 3568999999999999964 468999999999999999987 33333333 333221 257
Q ss_pred CcEEEEeeCCCCCCCCCH--------HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 75 IPLLVLGNKIDKPEALSK--------EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 75 ~p~ivv~nK~D~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+|+++++||+|+...... .+..+.+........++.|++|||++ .||.++|..+++.+..
T Consensus 107 ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 107 INIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp CEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTTSST
T ss_pred CcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHHHHHh
Confidence 999999999999764221 11222333211112468899999997 6999999999987753
No 70
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.88 E-value=8.6e-22 Score=126.66 Aligned_cols=111 Identities=21% Similarity=0.346 Sum_probs=89.7
Q ss_pred EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC-CCHHHH
Q 032598 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA-LSKEDL 95 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~~~~~ 95 (137)
..+.+|||||++.+...+..+++.+|++++|+|++++.+++.+..|+..+... .++|+++|+||+|.... ....+.
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~---~~~piilv~NK~D~~~~~~~~~~~ 169 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS---SNYIIILVANKIDKNKFQVDILEV 169 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH---SCCEEEEEEECTTCC-CCSCHHHH
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhh---CCCcEEEEEECCCcccccCCHHHH
Confidence 88999999999999999999999999999999999988888888888888654 23999999999994221 223333
Q ss_pred HHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 96 MEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
...... .++.++++||++|+|++++|++|.+.+.+
T Consensus 170 ~~~~~~-----~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 170 QKYAQD-----NNLLFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp HHHHHH-----TTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHH-----cCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 332221 13469999999999999999999988764
No 71
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.88 E-value=7.7e-22 Score=122.92 Aligned_cols=127 Identities=18% Similarity=0.300 Sum_probs=98.7
Q ss_pred CCcccceee-EEEe--CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 2 IPTVGFNMR-KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 2 ~pt~~~~~~-~~~~--~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.||++..+. .+.. ..+.+.+|||||++++...+..+++.+|++++|+|+++..+++.+..|+..+.......++|++
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~i 112 (166)
T 2ce2_X 33 DPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112 (166)
T ss_dssp CTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEE
T ss_pred CCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 456664433 2333 3477899999999999999999999999999999999988888888888877664434579999
Q ss_pred EEeeCCCCCCCCC-H---HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 79 VLGNKIDKPEALS-K---EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 79 vv~nK~D~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
+++||+|+.+... . .++...++ ++++++||++|+|++++++++.+.+.++
T Consensus 113 iv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 166 (166)
T 2ce2_X 113 LVGNKSDLAARTVESRQAQDLARSYG--------IPYIETSAKTRQGVEDAFYTLVREIRQH 166 (166)
T ss_dssp EEEECTTCSCCCSCHHHHHHHHHHHT--------CCEEEECTTTCTTHHHHHHHHHHHHHTC
T ss_pred EEEEchhhhhcccCHHHHHHHHHHcC--------CeEEEecCCCCCCHHHHHHHHHHHHHhC
Confidence 9999999876322 2 22333333 3599999999999999999999988653
No 72
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.88 E-value=1.7e-22 Score=127.77 Aligned_cols=126 Identities=12% Similarity=0.159 Sum_probs=90.7
Q ss_pred CCCcccceee-EEEe--CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcC--CCCCCC
Q 032598 1 MIPTVGFNMR-KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSK--PSLNGI 75 (137)
Q Consensus 1 ~~pt~~~~~~-~~~~--~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~ 75 (137)
+.||++..+. .+.. ..+.+.+|||||+++ ..+++.+|++++|+|++++.+++.+..|+..+... ....++
T Consensus 35 ~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~ 109 (178)
T 2iwr_A 35 LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGL 109 (178)
T ss_dssp CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCC
T ss_pred cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 3688885543 3443 347899999999987 45788999999999999999999888865544332 122579
Q ss_pred cEEEEeeCCCCCC--CC--CHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 76 PLLVLGNKIDKPE--AL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 76 p~ivv~nK~D~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
|+++++||+|+.. .+ ...+....... ...+.++++||++|+|++++|+++++.+.+
T Consensus 110 piilv~nK~Dl~~~~~~~v~~~~~~~~~~~----~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 169 (178)
T 2iwr_A 110 ALALVGTQDRISASSPRVVGDARARALXAD----MKRCSYYETXATYGLNVDRVFQEVAQKVVT 169 (178)
T ss_dssp EEEEEEECTTCBTTBCCCSCHHHHHHHHHH----HSSEEEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred CEEEEEECccccccccCcCCHHHHHHHHHh----hcCCeEEEEeccccCCHHHHHHHHHHHHHH
Confidence 9999999999842 22 22222221110 013569999999999999999999988754
No 73
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.88 E-value=1.5e-22 Score=126.62 Aligned_cols=124 Identities=24% Similarity=0.426 Sum_probs=98.2
Q ss_pred CCcccceee--EEEeC--CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMR--KVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~--~~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++.++. .+..+ ...+.+|||||++.+...+..+++.+|++++|+|++++.+++.+..|+..+.... .+.|+
T Consensus 35 ~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~pi 112 (168)
T 1z2a_A 35 KKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV--GDIPT 112 (168)
T ss_dssp SCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH--CSCCE
T ss_pred CCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCE
Confidence 577774443 34433 5789999999999999999999999999999999999888888888888776542 57899
Q ss_pred EEEeeCCCCCCCCC--HHH---HHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALS--KED---LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|+.+... ..+ +...++ +.++++||++|+|+++++++|.+.+.+
T Consensus 113 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 113 ALVQNKIDLLDDSCIKNEEAEGLAKRLK--------LRFYRTSVKEDLNVSEVFKYLAEKHLQ 167 (168)
T ss_dssp EEEEECGGGGGGCSSCHHHHHHHHHHHT--------CEEEECBTTTTBSSHHHHHHHHHHHHC
T ss_pred EEEEECcccCcccccCHHHHHHHHHHcC--------CeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 99999999865432 222 233332 369999999999999999999998764
No 74
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.88 E-value=4e-23 Score=134.25 Aligned_cols=126 Identities=23% Similarity=0.323 Sum_probs=96.5
Q ss_pred CCCcccceee-EEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMR-KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~-~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p 76 (137)
+.||++..+. .+. ...+.+.+|||||++++..++..+++.+|++++|+|++++.+++.+. .|+..+.... +++|
T Consensus 38 ~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~p 115 (212)
T 2j0v_A 38 YIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA--PNVP 115 (212)
T ss_dssp CCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCC
T ss_pred CCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCC
Confidence 4578885554 233 34589999999999999999999999999999999999998888876 6777775532 4799
Q ss_pred EEEEeeCCCCCCCC----------CH---HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEAL----------SK---EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~----------~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++++||+|+.+.. .. .++...++. ..++++||++|+|++++|+++.+.+.+
T Consensus 116 iilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~-------~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 116 IVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGA-------AAYIECSSKTQQNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp EEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTC-------SEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCC-------ceEEEccCCCCCCHHHHHHHHHHHHhh
Confidence 99999999986542 11 122333332 269999999999999999999988764
No 75
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.88 E-value=3.9e-23 Score=132.12 Aligned_cols=126 Identities=21% Similarity=0.274 Sum_probs=94.6
Q ss_pred CCCcccceee-EE--EeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCC--CCCC
Q 032598 1 MIPTVGFNMR-KV--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPS--LNGI 75 (137)
Q Consensus 1 ~~pt~~~~~~-~~--~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~ 75 (137)
+.||++..+. .+ +.+.+.+.+|||||+++++.+ ..+++.+|++++|+|+++..+++.+..|+..+..... ..++
T Consensus 50 ~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~ 128 (187)
T 3c5c_A 50 YDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSI 128 (187)
T ss_dssp CCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred cCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCC
Confidence 3578885543 22 334588999999999988775 6799999999999999999999998888888765321 2579
Q ss_pred cEEEEeeCCCCCCCCC--HH---HHHHHhCCCCCCCCceeEEEeec-ccCCChHHHHHHHHHhhhh
Q 032598 76 PLLVLGNKIDKPEALS--KE---DLMEQMGLKSITDREVCCYMISC-KNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 76 p~ivv~nK~D~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~Sa-~~~~~v~~~~~~i~~~~~~ 135 (137)
|+++++||+|+.+.+. .. ++...++ +.++++|| ++|+|++++|+++++.+.+
T Consensus 129 piilv~nK~Dl~~~~~v~~~~~~~~~~~~~--------~~~~e~Sa~~~g~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 129 PALLLGNKLDMAQYRQVTKAEGVALAGRFG--------CLFFEVSACLDFEHVQHVFHEAVREARR 186 (187)
T ss_dssp CEEEEEECGGGGGGCSSCHHHHHHHHHHHT--------CEEEECCSSSCSHHHHHHHHHHHHHHHC
T ss_pred CEEEEEECcchhhcCccCHHHHHHHHHHcC--------CcEEEEeecCccccHHHHHHHHHHHHhh
Confidence 9999999999965432 22 3333333 36999999 8999999999999998864
No 76
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.88 E-value=5.5e-22 Score=124.31 Aligned_cols=126 Identities=27% Similarity=0.445 Sum_probs=95.1
Q ss_pred CCccccee--eEEEeC--CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNM--RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~--~~~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+ ..+..+ .+.+.+|||||++.+...+..+++.+|++++|+|++++.+++.+..|+..+.... ..++|+
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~pi 111 (170)
T 1g16_A 33 ITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHA-NDEAQL 111 (170)
T ss_dssp -----CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEE
T ss_pred CCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcE
Confidence 46666443 344433 4789999999999999999999999999999999999888888888888776542 257999
Q ss_pred EEEeeCCCCCCCCC-H---HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 78 LVLGNKIDKPEALS-K---EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 78 ivv~nK~D~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
++++||+|+.+... . ..+...++ ++++++||++|+|++++|+++.+.+.++
T Consensus 112 ilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 112 LLVGNKSDMETRVVTADQGEALAKELG--------IPFIESSAKNDDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp EEEEECTTCTTCCSCHHHHHHHHHHHT--------CCEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred EEEEECccCCcCccCHHHHHHHHHHcC--------CeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 99999999954322 2 22333333 3599999999999999999999988653
No 77
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=4.3e-22 Score=127.68 Aligned_cols=125 Identities=19% Similarity=0.285 Sum_probs=96.9
Q ss_pred CCCcccceee-EEEeC--CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMR-KVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~-~~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p 76 (137)
+.||++..+. .+..+ .+.+.+|||||++++...+..+++.+|++++|+|++++.+++.+. .|+..+... ..++|
T Consensus 47 ~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p 124 (194)
T 2atx_A 47 YVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY--APNVP 124 (194)
T ss_dssp CCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--STTCC
T ss_pred CCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCC
Confidence 3578875553 34433 488999999999999999999999999999999999988888876 677777653 24799
Q ss_pred EEEEeeCCCCCCCC--------------CHH---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 77 LLVLGNKIDKPEAL--------------SKE---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 77 ~ivv~nK~D~~~~~--------------~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+++++||+|+.... ... .+...++. +.++++||++|+|++++|+++.+.+.
T Consensus 125 iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-------~~~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 125 FLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGA-------CCYVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp EEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTC-------SCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCC-------cEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 99999999997531 111 12222221 25999999999999999999998875
No 78
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.88 E-value=4.8e-23 Score=134.77 Aligned_cols=124 Identities=21% Similarity=0.408 Sum_probs=99.9
Q ss_pred CCcccceeeEEE----eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMRKVT----KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~~~~----~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||+|.+..... .+++.+.+|||||++.+...+..+++.+|++++|+|+++..+++.+..|+..+.... .++|+
T Consensus 45 ~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ 122 (221)
T 3gj0_A 45 VATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPI 122 (221)
T ss_dssp ETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS--TTCCE
T ss_pred CCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCE
Confidence 577775554432 346889999999999999999999999999999999999988988888988887642 47999
Q ss_pred EEEeeCCCCCCCCCHH---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALSKE---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++|+||+|+.+..... .+.... ++.++++||++|.|++++|++|.+.+.+
T Consensus 123 ilv~nK~Dl~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~~~gi~~l~~~l~~~l~~ 175 (221)
T 3gj0_A 123 VLCGNKVDIKDRKVKAKSIVFHRKK--------NLQYYDISAKSNYNFEKPFLWLARKLIG 175 (221)
T ss_dssp EEEEECTTSSSCSSCGGGCCHHHHH--------TCEEEECBGGGTBTTTHHHHHHHHHHHT
T ss_pred EEEEECCccccccccHHHHHHHHHc--------CCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 9999999997543321 122222 3469999999999999999999998764
No 79
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.88 E-value=2.7e-22 Score=128.18 Aligned_cols=125 Identities=21% Similarity=0.434 Sum_probs=99.0
Q ss_pred CCcccceee--EEEe--CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMR--KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~--~~~~--~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||+|..+. .+.. +.+.+.+|||||++++...+..+++.+|++++|+|+++..+++.+..|+..+.... ..++|+
T Consensus 52 ~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~pi 130 (189)
T 2gf9_A 52 VSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYS-WDNAQV 130 (189)
T ss_dssp CCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEE
T ss_pred CCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCE
Confidence 577775543 3333 35789999999999999999999999999999999999888888888888776542 357999
Q ss_pred EEEeeCCCCCCCCC--H---HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALS--K---EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++|+||+|+.+... . .++...++ +.++++||++|.|++++|++|.+.+.+
T Consensus 131 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 131 ILVGNKCDLEDERVVPAEDGRRLADDLG--------FEFFEASAKENINVKQVFERLVDVICE 185 (189)
T ss_dssp EEEEECTTCGGGCCSCHHHHHHHHHHHT--------CEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEEECcccccccCCCHHHHHHHHHHcC--------CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 99999999975432 2 22333333 369999999999999999999988764
No 80
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.88 E-value=2e-22 Score=130.12 Aligned_cols=128 Identities=23% Similarity=0.304 Sum_probs=95.6
Q ss_pred CCccccee--eEEEeCC--EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~--~~~~~~~--~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+ ..+..++ +.+.+|||||++++...+..+++.+|++++|+|+++..+++.+..|+..+..... .++|+
T Consensus 55 ~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~pi 133 (200)
T 2o52_A 55 NHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLAS-PNIVV 133 (200)
T ss_dssp -----CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTC-TTCEE
T ss_pred CCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCcE
Confidence 46666443 3454444 8999999999999999999999999999999999998888888888887765432 67999
Q ss_pred EEEeeCCCCCCCCCH--HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALSK--EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++|+||+|+...... .+...... ..++.++++||++|+|++++|++|.+.+.+
T Consensus 134 ilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 188 (200)
T 2o52_A 134 ILCGNKKDLDPEREVTFLEASRFAQ-----ENELMFLETSALTGENVEEAFLKCARTILN 188 (200)
T ss_dssp EEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEEECCCcccccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 999999999654322 22222111 113469999999999999999999988754
No 81
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.88 E-value=4.1e-22 Score=125.81 Aligned_cols=129 Identities=21% Similarity=0.338 Sum_probs=97.5
Q ss_pred CCccccee--eEEEeCC--EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~--~~~~~~~--~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+ ..+..++ +.+.+|||||++.+...+..+++.+|++++|+|++++.+++....|+..+.... ..++|+
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~pi 122 (179)
T 2y8e_A 44 QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTER-GSDVII 122 (179)
T ss_dssp CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEE
T ss_pred CCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcE
Confidence 46666443 3344443 789999999999999999999999999999999999888888888888776532 257999
Q ss_pred EEEeeCCCCCCCCC--HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 78 LVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 78 ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
++++||+|+.+... ..+....... .+++++++||++|+|++++|++|.+.+.++
T Consensus 123 ilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 178 (179)
T 2y8e_A 123 MLVGNKTDLSDKRQVSTEEGERKAKE-----LNVMFIETSAKAGYNVKQLFRRVAAALPGM 178 (179)
T ss_dssp EEEEECGGGGGGCCSCHHHHHHHHHH-----HTCEEEEEBTTTTBSHHHHHHHHHHTCC--
T ss_pred EEEEECCcccccCcCCHHHHHHHHHH-----cCCeEEEEeCCCCCCHHHHHHHHHHHHhhc
Confidence 99999999865433 2222211111 134699999999999999999999987654
No 82
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.9e-22 Score=132.21 Aligned_cols=128 Identities=20% Similarity=0.310 Sum_probs=93.9
Q ss_pred CCccccee--eEEEeCC--EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~--~~~~~~~--~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+ ..+..++ +.+.+|||||++++..++..+++.+|++++|+|+++..+++.+..|+..+.... ..++|+
T Consensus 43 ~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~-~~~~pi 121 (223)
T 3cpj_B 43 KSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENA-DDNVAV 121 (223)
T ss_dssp ----CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHC-C--CEE
T ss_pred CCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeE
Confidence 46777443 3455555 799999999999999999999999999999999999989998888888876542 357999
Q ss_pred EEEeeCCCCCCCCC--HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++|+||+|+.+... ..+....... .++.++++||++|+|++++|++|.+.+.+
T Consensus 122 ilv~nK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 122 GLIGNKSDLAHLRAVPTEESKTFAQE-----NQLLFTETSALNSENVDKAFEELINTIYQ 176 (223)
T ss_dssp EEEECCGGGGGGCCSCHHHHHHHHHH-----TTCEEEECCCC-CCCHHHHHHHHHHHHTT
T ss_pred EEEEECcccccccccCHHHHHHHHHH-----cCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999965432 2222221111 13469999999999999999999998864
No 83
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=1.7e-22 Score=126.76 Aligned_cols=127 Identities=20% Similarity=0.292 Sum_probs=96.3
Q ss_pred CCcccceeeE-EE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCC-CCCCCcE
Q 032598 2 IPTVGFNMRK-VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKP-SLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~~-~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ 77 (137)
.||++..+.. +. .+...+.+|||||++++...+..+++.+|++++|+|++++.+++....|+..+.... ...++|+
T Consensus 33 ~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pi 112 (172)
T 2erx_A 33 IPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPI 112 (172)
T ss_dssp CCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCE
T ss_pred CCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCE
Confidence 5677755543 22 234789999999999999999999999999999999999888877777776665431 2357999
Q ss_pred EEEeeCCCCCCCCCH--H---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 78 LVLGNKIDKPEALSK--E---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 78 ivv~nK~D~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
++++||+|+.+.... . .+.... +++++++||++|+|++++|++|.+.+.++
T Consensus 113 i~v~nK~Dl~~~~~v~~~~~~~~~~~~--------~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 168 (172)
T 2erx_A 113 MLVGNKCDESPSREVQSSEAEALARTW--------KCAFMETSAKLNHNVKELFQELLNLEKRR 168 (172)
T ss_dssp EEEEECGGGGGGCCSCHHHHHHHHHHH--------TCEEEECBTTTTBSHHHHHHHHHHTCCSS
T ss_pred EEEEEccccccccccCHHHHHHHHHHh--------CCeEEEecCCCCcCHHHHHHHHHHHHhhh
Confidence 999999998654332 1 122222 24699999999999999999999988654
No 84
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.87 E-value=1.5e-22 Score=127.00 Aligned_cols=128 Identities=25% Similarity=0.323 Sum_probs=91.5
Q ss_pred CCcccceee--EEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMR--KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~--~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+. .+. ...+.+.+|||||++++...+..+++.+|++++|+|+++..+++.+..|+..+.... ..++|+
T Consensus 36 ~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi 114 (170)
T 1z08_A 36 ITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKML-GNEICL 114 (170)
T ss_dssp CCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHH-GGGSEE
T ss_pred CCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCeE
Confidence 577775543 344 345789999999999999999999999999999999999888888888887765432 246899
Q ss_pred EEEeeCCCCCCCCC--HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|+.+... ..+....... .++.++++||++|+|++++|++|.+.+.+
T Consensus 115 ilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 169 (170)
T 1z08_A 115 CIVGNKIDLEKERHVSIQEAESYAES-----VGAKHYHTSAKQNKGIEELFLDLCKRMIE 169 (170)
T ss_dssp EEEEECGGGGGGCCSCHHHHHHHHHH-----TTCEEEEEBTTTTBSHHHHHHHHHHHHHC
T ss_pred EEEEECcccccccccCHHHHHHHHHH-----cCCeEEEecCCCCCCHHHHHHHHHHHHhh
Confidence 99999999975432 2222221111 12469999999999999999999998764
No 85
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.87 E-value=1.5e-21 Score=126.66 Aligned_cols=125 Identities=27% Similarity=0.455 Sum_probs=98.1
Q ss_pred CCccccee--eEEEeCC--EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~--~~~~~~~--~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+ ..+..++ +.+.+|||||++.+...+..+++.+|++++|+|+++..+++.+..|+..+..... .++|+
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~pi 128 (213)
T 3cph_A 50 ITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAN-DEAQL 128 (213)
T ss_dssp SCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTT-TCSEE
T ss_pred CCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCE
Confidence 46777444 3455555 7899999999999999999999999999999999998888888888887765422 47899
Q ss_pred EEEeeCCCCCCCCC-H---HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALS-K---EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++|+||+|+..... . ..+...++ ++++++||++|+|++++|++|.+.+.+
T Consensus 129 ilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 129 LLVGNKSDMETRVVTADQGEALAKELG--------IPFIESSAKNDDNVNEIFFTLAKLIQE 182 (213)
T ss_dssp EEEEECTTCSSCCSCHHHHHHHHHHHT--------CCEEECBTTTTBSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCcccccCHHHHHHHHHHcC--------CEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999943222 1 22333333 359999999999999999999987754
No 86
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.87 E-value=3.9e-22 Score=126.24 Aligned_cols=131 Identities=27% Similarity=0.430 Sum_probs=86.9
Q ss_pred CCccccee--eEEEe---CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCC---CCC
Q 032598 2 IPTVGFNM--RKVTK---GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKP---SLN 73 (137)
Q Consensus 2 ~pt~~~~~--~~~~~---~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~ 73 (137)
.||++..+ ..+.. ....+.+|||||++.+...+..+++.+|++++|+|+++..+++.+..|+..+.... ...
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ 117 (182)
T 1ky3_A 38 KATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPE 117 (182)
T ss_dssp ---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTT
T ss_pred CCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcC
Confidence 46776443 33433 35899999999999999999999999999999999999888888888887776432 236
Q ss_pred CCcEEEEeeCCCCCCCC---CHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 74 GIPLLVLGNKIDKPEAL---SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 74 ~~p~ivv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
++|+++++||+|+.... ...+....... ...+.++++||++|+|++++|+++.+.+.++
T Consensus 118 ~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 118 TFPFVILGNKIDAEESKKIVSEKSAQELAKS----LGDIPLFLTSAKNAINVDTAFEEIARSALQQ 179 (182)
T ss_dssp TCCEEEEEECTTSCGGGCCSCHHHHHHHHHH----TTSCCEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCccccccccCCHHHHHHHHHh----cCCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 79999999999995432 22222221110 1234699999999999999999999987653
No 87
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.87 E-value=5e-23 Score=130.56 Aligned_cols=125 Identities=21% Similarity=0.324 Sum_probs=87.0
Q ss_pred CCcccceee---EEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~---~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+. .++...+.+.+|||||++++...+..+++.+|++++|+|++++.+++.+. .|+..+.... .++|+
T Consensus 38 ~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~pi 115 (182)
T 3bwd_D 38 VPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA--PGVPI 115 (182)
T ss_dssp -------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCCE
T ss_pred CCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCE
Confidence 466664332 24556688889999999999999999999999999999999988888876 5777665532 47999
Q ss_pred EEEeeCCCCCCCCCH---------------HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALSK---------------EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|+.+.... .++...++. ..++++||++|+|++++|+++.+.+.+
T Consensus 116 ilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-------~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 116 VLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGA-------PAYIECSSKSQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp EEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTC-------SEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred EEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCC-------CEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 999999998654221 122333331 269999999999999999999988753
No 88
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.87 E-value=1.1e-21 Score=125.39 Aligned_cols=127 Identities=18% Similarity=0.310 Sum_probs=88.1
Q ss_pred CCcccceee-EEEeC--CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 2 IPTVGFNMR-KVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 2 ~pt~~~~~~-~~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.||++..+. .+..+ .+.+.+|||||++.+...+..+++.+|++++|+|+++..+++.+..|+..+.......++|++
T Consensus 51 ~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i 130 (190)
T 3con_A 51 DPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMV 130 (190)
T ss_dssp CTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEE
T ss_pred CCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEE
Confidence 456664443 33333 467999999999999999999999999999999999988888888888877654333579999
Q ss_pred EEeeCCCCCCCC-CHH---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 79 VLGNKIDKPEAL-SKE---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 79 vv~nK~D~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
+++||+|+.... ... ++...++ +.++++||++|+|++++|++|.+.+.+.
T Consensus 131 lv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 184 (190)
T 3con_A 131 LVGNKCDLPTRTVDTKQAHELAKSYG--------IPFIETSAKTRQGVEDAFYTLVREIRQY 184 (190)
T ss_dssp EEEECTTCSCCCSCHHHHHHHHHHHT--------CCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEEECCcCCcccCCHHHHHHHHHHcC--------CeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 999999987532 222 2333333 3599999999999999999999988653
No 89
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=1.6e-22 Score=129.94 Aligned_cols=127 Identities=18% Similarity=0.266 Sum_probs=96.4
Q ss_pred CCcccceeeE-EE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCC-CCCCcE
Q 032598 2 IPTVGFNMRK-VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPS-LNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~~-~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ 77 (137)
.||++..+.. +. ...+.+.+|||||++.+...+..+++.+|++++|+|+++..+++.+..|+..+..... ..++|+
T Consensus 38 ~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~pi 117 (199)
T 2gf0_A 38 IPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPV 117 (199)
T ss_dssp SCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCE
T ss_pred cCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 5777755543 22 3357899999999999999999999999999999999998888777777665544211 247899
Q ss_pred EEEeeCCCCCCCCC-HH---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 78 LVLGNKIDKPEALS-KE---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 78 ivv~nK~D~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
++|+||+|+..... .. .+...++ +.++++||++|+|++++|++|.+.+.++
T Consensus 118 ilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 118 MLVGNKCDETQREVDTREAQAVAQEWK--------CAFMETSAKMNYNVKELFQELLTLETRR 172 (199)
T ss_dssp EEEEECTTCSSCSSCHHHHHHHHHHHT--------CEEEECBTTTTBSHHHHHHHHHHHCSSS
T ss_pred EEEEECccCCccccCHHHHHHHHHHhC--------CeEEEEecCCCCCHHHHHHHHHHHHhhh
Confidence 99999999975322 22 2222222 3699999999999999999999987653
No 90
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.87 E-value=6.9e-22 Score=128.88 Aligned_cols=129 Identities=20% Similarity=0.225 Sum_probs=97.0
Q ss_pred CCcccceeeEEE--eC--C-EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 2 IPTVGFNMRKVT--KG--N-VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 2 ~pt~~~~~~~~~--~~--~-~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
.||++....... .. . +.+.+|||||++.+...+..+++.+|++++|+|+++..+++.+..|+..+.... ..++|
T Consensus 41 ~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p 119 (218)
T 4djt_A 41 NATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVV-GNEAP 119 (218)
T ss_dssp ETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-CSSSC
T ss_pred CCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCC
Confidence 366665444332 21 2 889999999999999999999999999999999999988888888887776542 24589
Q ss_pred EEEEeeCCCCCCCCCH-HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALSK-EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++|+||+|+.+.... .+....+.. ..++.++++||++|.|++++|++|.+.+.+
T Consensus 120 iilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 175 (218)
T 4djt_A 120 IVVCANKIDIKNRQKISKKLVMEVLK----GKNYEYFEISAKTAHNFGLPFLHLARIFTG 175 (218)
T ss_dssp EEEEEECTTCC----CCHHHHHHHTT----TCCCEEEEEBTTTTBTTTHHHHHHHHHHHC
T ss_pred EEEEEECCCCccccccCHHHHHHHHH----HcCCcEEEEecCCCCCHHHHHHHHHHHHhc
Confidence 9999999999764222 222222221 224579999999999999999999998865
No 91
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.87 E-value=1.5e-22 Score=132.01 Aligned_cols=126 Identities=17% Similarity=0.246 Sum_probs=82.2
Q ss_pred CCcccceee-EEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMR-KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~-~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+. .+. ...+.+.+|||||++.+...+..+++.+|++++|+|+++..+++.+. .|+..+... ..++|+
T Consensus 64 ~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~pi 141 (214)
T 2j1l_A 64 TPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHF--CKKVPI 141 (214)
T ss_dssp CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHH--CSSCCE
T ss_pred CCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHh--CCCCCE
Confidence 467764443 233 34568999999999999999999999999999999999988888876 677766543 257999
Q ss_pred EEEeeCCCCCCCCCHH-----------------HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 78 LVLGNKIDKPEALSKE-----------------DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 78 ivv~nK~D~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
++|+||+|+....... .+...++. ..++++||++|+|++++|++|.+.+.+.
T Consensus 142 ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-------~~~~~~SA~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 142 IVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGA-------VAYLECSARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp EEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC-------SEEEECBTTTTBSHHHHHHHHHHHHHHC
T ss_pred EEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCC-------CEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999997643211 12222221 2699999999999999999999988753
No 92
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.87 E-value=3.3e-21 Score=125.35 Aligned_cols=131 Identities=23% Similarity=0.289 Sum_probs=89.7
Q ss_pred CcccceeeEEEeC---CEEEEEEecCCccccHH-hHHHHhccCCEEEEEEeCCCCC-ChHHHHHHHHHHhcC--CCCCCC
Q 032598 3 PTVGFNMRKVTKG---NVTIKLWDLGGQPRFRS-MWERYCRAVSAIVYVVDAADYD-NLPVSRSELHDLLSK--PSLNGI 75 (137)
Q Consensus 3 pt~~~~~~~~~~~---~~~~~~~Dt~g~~~~~~-~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~--~~~~~~ 75 (137)
||++.++..+..+ ++.+.+|||||++++.. ++..+++.++++++|+|+++.. ++.....++..+... ....++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (214)
T 2fh5_B 37 TSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSP 116 (214)
T ss_dssp CCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCC
T ss_pred CCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCC
Confidence 3445555555554 68999999999999998 8889999999999999998742 344444444433221 123579
Q ss_pred cEEEEeeCCCCCCCCCHHHHHHHhC-----------------------CCCCC-----------CCceeEEEeecccC--
Q 032598 76 PLLVLGNKIDKPEALSKEDLMEQMG-----------------------LKSIT-----------DREVCCYMISCKNS-- 119 (137)
Q Consensus 76 p~ivv~nK~D~~~~~~~~~~~~~~~-----------------------~~~~~-----------~~~~~~~~~Sa~~~-- 119 (137)
|+++++||+|+............+. ..... ...+.|++|||++|
T Consensus 117 piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~ 196 (214)
T 2fh5_B 117 SLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRG 196 (214)
T ss_dssp EEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC----
T ss_pred CEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCc
Confidence 9999999999987655433222211 00000 11678999999999
Q ss_pred ----CChHHHHHHHHHhh
Q 032598 120 ----TNIDTVIDWLVKHS 133 (137)
Q Consensus 120 ----~~v~~~~~~i~~~~ 133 (137)
+|++++|++|.+.+
T Consensus 197 ~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 197 DTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp ---CCBCHHHHHHHHHHC
T ss_pred cccccChHHHHHHHHHhC
Confidence 99999999998763
No 93
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=4.2e-22 Score=129.80 Aligned_cols=125 Identities=15% Similarity=0.174 Sum_probs=92.5
Q ss_pred Cccccee--eEEEeC--CEEEEEEecCCccc-cHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 3 PTVGFNM--RKVTKG--NVTIKLWDLGGQPR-FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 3 pt~~~~~--~~~~~~--~~~~~~~Dt~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
|++|..+ ..+..+ .+.+.+|||+|++. ++.+...+++.++++++|||+++..+++.+..|...+.......++|+
T Consensus 69 ~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~pi 148 (211)
T 2g3y_A 69 EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPI 148 (211)
T ss_dssp --CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCE
T ss_pred CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcE
Confidence 4555443 334433 46788999999887 556666778899999999999999999998888877765433357999
Q ss_pred EEEeeCCCCCCCCCH--HH---HHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALSK--ED---LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++|+||+|+.+.+.+ .+ ....+ ++.+++|||++|+|++++|+++++.+..
T Consensus 149 ilVgNK~DL~~~r~v~~~e~~~~a~~~--------~~~~~e~SAk~g~~v~elf~~l~~~i~~ 203 (211)
T 2g3y_A 149 ILVGNKSDLVRCREVSVSEGRACAVVF--------DCKFIETSAAVQHNVKELFEGIVRQVRL 203 (211)
T ss_dssp EEEEECTTCGGGCCSCHHHHHHHHHHH--------TCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEEEChHHhcCceEeHHHHHHHHHHc--------CCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 999999999654332 21 12222 2469999999999999999999998754
No 94
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.86 E-value=3.4e-22 Score=129.21 Aligned_cols=130 Identities=23% Similarity=0.353 Sum_probs=97.5
Q ss_pred CCcccceee--EEEe--CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCC---CCC
Q 032598 2 IPTVGFNMR--KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPS---LNG 74 (137)
Q Consensus 2 ~pt~~~~~~--~~~~--~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~ 74 (137)
.||++..+. .+.. ..+.+.+|||||++.+...+..+++.+|++++|+|++++.+++.+..|+..+..... ..+
T Consensus 38 ~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 117 (207)
T 1vg8_A 38 KATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPEN 117 (207)
T ss_dssp CCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGG
T ss_pred CCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCC
Confidence 467774443 3333 348999999999999999889999999999999999998888888888877754321 247
Q ss_pred CcEEEEeeCCCCCCCCC-HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 75 IPLLVLGNKIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 75 ~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+|+++++||+|+..... .......... ...+.++++||++|+|++++|++|.+.+.+
T Consensus 118 ~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 118 FPFVVLGNKIDLENRQVATKRAQAWCYS----KNNIPYFETSAKEAINVEQAFQTIARNALK 175 (207)
T ss_dssp SCEEEEEECTTSSCCCSCHHHHHHHHHH----TTSCCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCcccccCHHHHHHHHHh----cCCceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 89999999999974322 2222222110 123469999999999999999999988754
No 95
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.86 E-value=1.4e-22 Score=130.56 Aligned_cols=125 Identities=17% Similarity=0.219 Sum_probs=95.7
Q ss_pred CCcccceee-EEEeCC--EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMR-KVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~-~~~~~~--~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+. .+..++ +.+.+|||||++++..++..+++.+|++++|+|++++.+++.+. .|+..+... ..++|+
T Consensus 50 ~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ 127 (201)
T 2q3h_A 50 IPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCH--CPKAPI 127 (201)
T ss_dssp -CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CSSSCE
T ss_pred CCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCE
Confidence 577775553 344444 67889999999999999999999999999999999998888886 677777653 247999
Q ss_pred EEEeeCCCCCCCC--------------CH---HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEAL--------------SK---EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~--------------~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++|+||+|+.... .. ..+...++. +.++++||++|+|++++|+++.+.+.+
T Consensus 128 ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-------~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 128 ILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKA-------ASYIECSALTQKNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp EEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTC-------SEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCC-------cEEEEEecCCCCCHHHHHHHHHHHHhc
Confidence 9999999986421 11 122222221 269999999999999999999988764
No 96
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.86 E-value=1.4e-22 Score=129.13 Aligned_cols=126 Identities=16% Similarity=0.248 Sum_probs=96.5
Q ss_pred CCCcccceee-EEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHH-HHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMR-KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVS-RSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~-~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p 76 (137)
+.||++..+. .+. ...+.+.+|||||++.+...+..+++.+|++++|+|++++.+++.+ ..|+..+... ..++|
T Consensus 36 ~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~p 113 (184)
T 1m7b_A 36 YVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF--CPNTK 113 (184)
T ss_dssp CCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTCE
T ss_pred CCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHH--CCCCC
Confidence 3577775543 233 3458899999999999999999999999999999999998888887 5677666543 25799
Q ss_pred EEEEeeCCCCCCC--------------CCHH---HHHHHhCCCCCCCCceeEEEeecc-cCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEA--------------LSKE---DLMEQMGLKSITDREVCCYMISCK-NSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~--------------~~~~---~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~v~~~~~~i~~~~~~ 135 (137)
+++++||+|+.+. .... ++...++ .+.++++||+ +|+|++++|+++.+.+.+
T Consensus 114 iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------~~~~~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 114 MLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG-------AATYIECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp EEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT-------CSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcC-------CcEEEEeeecCCCcCHHHHHHHHHHHHhc
Confidence 9999999999642 1111 2233332 1369999998 689999999999998865
No 97
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.86 E-value=1.7e-22 Score=130.86 Aligned_cols=130 Identities=18% Similarity=0.237 Sum_probs=94.0
Q ss_pred CCcccceee-E--EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMR-K--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~-~--~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+. . ++...+.+.+|||||++++...+..+++.+|++++|+|+++..+++... .|+..+.... .++|+
T Consensus 60 ~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~pi 137 (204)
T 4gzl_A 60 IPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC--PNTPI 137 (204)
T ss_dssp CCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCE
T ss_pred CCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCE
Confidence 466664333 2 3345577889999999999999999999999999999999998888876 6776665542 57999
Q ss_pred EEEeeCCCCCCCCCHHHHHHHhCCCCCC----------CCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 78 LVLGNKIDKPEALSKEDLMEQMGLKSIT----------DREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 78 ivv~nK~D~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
++|+||+|+.+.....+........... ....+++++||++|+|++++|+++.+.+
T Consensus 138 ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 138 ILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp EEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred EEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 9999999987543222111111110000 0113599999999999999999999865
No 98
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.86 E-value=2.1e-22 Score=127.95 Aligned_cols=125 Identities=18% Similarity=0.254 Sum_probs=94.9
Q ss_pred CCcccceee-EEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMR-KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~-~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+. .+. ...+.+.+|||||++++...+..+++.+|++++|+|++++.+++... .|+..+.... .++|+
T Consensus 35 ~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~pi 112 (186)
T 1mh1_A 35 IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC--PNTPI 112 (186)
T ss_dssp CCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS--TTSCE
T ss_pred CCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhC--CCCCE
Confidence 567774443 233 34577889999999999999999999999999999999988888876 5777665432 37999
Q ss_pred EEEeeCCCCCCCCCHH-----------------HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALSKE-----------------DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|+.+..... .+...++ .++++++||++|+|++++|+++.+.+.+
T Consensus 113 ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 113 ILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG-------AVKYLECSALTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp EEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT-------CSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred EEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcC-------CcEEEEecCCCccCHHHHHHHHHHHHhc
Confidence 9999999986532111 1112221 1369999999999999999999998864
No 99
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.86 E-value=7.2e-23 Score=142.19 Aligned_cols=121 Identities=16% Similarity=0.282 Sum_probs=90.9
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCC----------CCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAA----------DYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 84 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 84 (137)
+.+.+++|||+|++++++.|.+++++++++++|+|++ +..+++....|+..+.......++|+++++||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5689999999999999999999999999999999998 667888888899888776545789999999999
Q ss_pred CCCCCC----C-------------------HHHH----HHHh------CC-CCCCCCceeEEEeecccCCChHHHHHHHH
Q 032598 85 DKPEAL----S-------------------KEDL----MEQM------GL-KSITDREVCCYMISCKNSTNIDTVIDWLV 130 (137)
Q Consensus 85 D~~~~~----~-------------------~~~~----~~~~------~~-~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 130 (137)
|+.+.. + ..+. ...+ .. .....+.+.+++|||++++||+++|.++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 974210 0 1111 1111 00 00012345679999999999999999999
Q ss_pred Hhhhh
Q 032598 131 KHSKS 135 (137)
Q Consensus 131 ~~~~~ 135 (137)
+.+.+
T Consensus 341 ~~I~~ 345 (354)
T 2xtz_A 341 ETLRR 345 (354)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 100
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=1.6e-21 Score=126.44 Aligned_cols=133 Identities=17% Similarity=0.222 Sum_probs=93.2
Q ss_pred CCcccceee-EEEeC--CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHH-HHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMR-KVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVS-RSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~-~~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+. .+..+ .+.+.+|||||++++...+..+++.+|++++|+|+++..+++.+ ..|+..+... ..++|+
T Consensus 55 ~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~pi 132 (207)
T 2fv8_A 55 VPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHF--CPNVPI 132 (207)
T ss_dssp ----CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHH--STTCCE
T ss_pred CCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCE
Confidence 477775553 34433 47899999999999999999999999999999999998888887 4566666542 257999
Q ss_pred EEEeeCCCCCCCCCHHHHHHHhCCCCCC---------CCc-eeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 78 LVLGNKIDKPEALSKEDLMEQMGLKSIT---------DRE-VCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 78 ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~-~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
++++||+|+.+.....+....+...... ..+ ..++++||++|+|++++|++|.+.+.+.
T Consensus 133 ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 133 ILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp EEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHSC
T ss_pred EEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999996542221111111110000 011 2689999999999999999999987643
No 101
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.86 E-value=1.6e-22 Score=130.32 Aligned_cols=125 Identities=25% Similarity=0.475 Sum_probs=91.2
Q ss_pred Cccc--ceeeEEEeCC--EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 3 PTVG--FNMRKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 3 pt~~--~~~~~~~~~~--~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
||++ +....+..++ +.+.+|||||++.+...+..+++.+|++++|+|+++..+++.+..|+..+..... .++|++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~i 142 (199)
T 3l0i_B 64 STIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKL 142 (199)
T ss_dssp HHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC--CCSEEE
T ss_pred CcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcc-CCCCEE
Confidence 4444 3334455544 7899999999999999999999999999999999999999999999888866432 579999
Q ss_pred EEeeCCCCCCCCC-----HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 79 VLGNKIDKPEALS-----KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 79 vv~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
+|+||+|+.+... ...+...++ +.++++||++|+|++++|++|.+.+.++
T Consensus 143 lv~nK~Dl~~~~~v~~~~~~~~~~~~~--------~~~~~vSA~~g~gv~~l~~~l~~~l~~~ 197 (199)
T 3l0i_B 143 LVGNKCDLTTKKVVDYTTAKEFADSLG--------IPFLETSAKNATNVEQSFMTMAAEIKKR 197 (199)
T ss_dssp EC-CCSSCC--CCCCSCC-CHHHHTTT--------CCBCCCCC---HHHHHHHHHHTTTTTTT
T ss_pred EEEECccCCccccCCHHHHHHHHHHcC--------CeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 9999999965432 233444443 3589999999999999999999988754
No 102
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.86 E-value=2.3e-21 Score=125.10 Aligned_cols=133 Identities=17% Similarity=0.234 Sum_probs=95.4
Q ss_pred CCCcccceee-EEEeC--CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHH-HHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMR-KVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVS-RSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~-~~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p 76 (137)
+.||++.++. .+..+ .+.+.+|||||++++...+..+++.+|++++|+|+++..+++.+ ..|...+... ..++|
T Consensus 54 ~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p 131 (201)
T 2gco_A 54 YVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVP 131 (201)
T ss_dssp CCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--STTCC
T ss_pred cCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCC
Confidence 3577775553 34433 47899999999999999999999999999999999998888887 4566665442 24799
Q ss_pred EEEEeeCCCCCCCCCHHHHHHHhCCCCC---------CCCc-eeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALSKEDLMEQMGLKSI---------TDRE-VCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~~~~~~~~~~~~~---------~~~~-~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++++||+|+.+.....+....+..... ...+ ..++++||++|+|++++|++|.+.+.+
T Consensus 132 iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 132 IILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp EEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 9999999999764211111111100000 0011 268999999999999999999988753
No 103
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.86 E-value=2.4e-22 Score=130.36 Aligned_cols=126 Identities=16% Similarity=0.248 Sum_probs=96.8
Q ss_pred CCCcccceee-EEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHH-HHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMR-KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVS-RSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~-~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p 76 (137)
+.||++..+. .+. ...+.+.+|||||++.+...+..+++.+|++++|+|+++..+++.+ ..|+..+... ..++|
T Consensus 57 ~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~--~~~~p 134 (205)
T 1gwn_A 57 YVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF--CPNTK 134 (205)
T ss_dssp CCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTCE
T ss_pred cCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH--CCCCC
Confidence 3577775553 233 3458999999999999999999999999999999999998888887 5777776543 25799
Q ss_pred EEEEeeCCCCCCC--------------CCHH---HHHHHhCCCCCCCCceeEEEeecc-cCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEA--------------LSKE---DLMEQMGLKSITDREVCCYMISCK-NSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~--------------~~~~---~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~v~~~~~~i~~~~~~ 135 (137)
+++|+||+|+.+. .... ++...++ .+.++++||+ +|+|++++|+.+.+.+.+
T Consensus 135 iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------~~~~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 135 MLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG-------AATYIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp EEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT-------CSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcC-------CCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 9999999999642 1111 2233332 1369999999 689999999999998865
No 104
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.86 E-value=3.4e-22 Score=127.43 Aligned_cols=132 Identities=13% Similarity=0.279 Sum_probs=94.1
Q ss_pred CCCcccceeeEEE-------eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCC-CChHHHHHHHHHHhcCCCC
Q 032598 1 MIPTVGFNMRKVT-------KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADY-DNLPVSRSELHDLLSKPSL 72 (137)
Q Consensus 1 ~~pt~~~~~~~~~-------~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~ 72 (137)
+.||+|.++.... .+.+.+.+|||+|++++..+++.+++.++++++|+|++++ .+++.+..|+..+... .
T Consensus 33 ~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~--~ 110 (184)
T 2zej_A 33 QSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKAR--A 110 (184)
T ss_dssp ----CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHH--C
T ss_pred cceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhh--C
Confidence 3578886665432 2578999999999999999999999999999999999987 4688888888877543 2
Q ss_pred CCCcEEEEeeCCCCCCCCCHH----HHHHHhCCCCCCC-CceeEEEeecccCC-ChHHHHHHHHHhhhh
Q 032598 73 NGIPLLVLGNKIDKPEALSKE----DLMEQMGLKSITD-REVCCYMISCKNST-NIDTVIDWLVKHSKS 135 (137)
Q Consensus 73 ~~~p~ivv~nK~D~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~Sa~~~~-~v~~~~~~i~~~~~~ 135 (137)
.++|+++|+||+|+.+..... .....+... .+. ....++++||++|. |++++++.+.+.+.+
T Consensus 111 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 111 SSSPVILVGTHLDVSDEKQRKACMSKITKELLNK-RGFPAIRDYHFVNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTC-TTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHh-cCCcchhheEEEecccCchhHHHHHHHHHHHHhc
Confidence 478999999999997543322 222333211 111 11248999999997 999999999987764
No 105
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.85 E-value=9.5e-21 Score=121.61 Aligned_cols=111 Identities=18% Similarity=0.262 Sum_probs=86.4
Q ss_pred CCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHH---HHHhcCCC-CCCCcEEEEeeCC-CCCCCCCHHHHHHHh
Q 032598 25 GGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSEL---HDLLSKPS-LNGIPLLVLGNKI-DKPEALSKEDLMEQM 99 (137)
Q Consensus 25 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~~-~~~~p~ivv~nK~-D~~~~~~~~~~~~~~ 99 (137)
+||.+.+++|++|++++|++|||+|++|.+.++ ....+ ..++.... ..+.|++|++||. |+....+..++.+.+
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L 188 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHEL 188 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHT
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHc
Confidence 489999999999999999999999999986655 55555 33444332 3689999999995 788888889999999
Q ss_pred CCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhcC
Q 032598 100 GLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSKS 137 (137)
Q Consensus 100 ~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~ 137 (137)
+.... .+.|++..|||++|+|+.+.++||++.+.+++
T Consensus 189 ~L~~l-~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~ 225 (227)
T 3l82_B 189 HLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESKR 225 (227)
T ss_dssp TGGGG-CSCEEEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred CCcCC-CCCEEEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence 87665 47899999999999999999999999987654
No 106
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.84 E-value=6.3e-21 Score=122.63 Aligned_cols=117 Identities=19% Similarity=0.249 Sum_probs=85.7
Q ss_pred eCCEEEEEEecCCccccHHhH---HHHhccCCEEEEEEeCCCC--CChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 032598 14 KGNVTIKLWDLGGQPRFRSMW---ERYCRAVSAIVYVVDAADY--DNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 14 ~~~~~~~~~Dt~g~~~~~~~~---~~~~~~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 88 (137)
.+.+.+++|||||++++.... ..+++.+|++++|+|+++. +++.....|+..+... ..++|+++|+||+|+.+
T Consensus 66 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~piilv~nK~Dl~~ 143 (196)
T 3llu_A 66 SSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV--NPDMNFEVFIHKVDGLS 143 (196)
T ss_dssp TTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSC
T ss_pred CCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc--CCCCcEEEEEeccccCc
Confidence 456899999999999987766 8999999999999999997 4455555666655321 35799999999999865
Q ss_pred CCC-------H-HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 89 ALS-------K-EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 89 ~~~-------~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
... . ......+........++.++++||++ +|++++|..+++.+
T Consensus 144 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 144 DDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred hhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 311 1 11122222111113457899999999 99999999999875
No 107
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.83 E-value=9.8e-21 Score=121.53 Aligned_cols=112 Identities=15% Similarity=0.169 Sum_probs=84.7
Q ss_pred CCEEEEEEecCCccc-cHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH-
Q 032598 15 GNVTIKLWDLGGQPR-FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK- 92 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~- 92 (137)
..+.+.+|||+|++. ++.+...+++.++++++|||+++..+++....|...+.......++|+++++||+|+...+..
T Consensus 54 ~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~ 133 (192)
T 2cjw_A 54 ESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVS 133 (192)
T ss_dssp EEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSC
T ss_pred eEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhcccccc
Confidence 346778999999876 455667788899999999999999999988888776655333357999999999998653322
Q ss_pred -HH---HHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 93 -ED---LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 93 -~~---~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
.+ ....+ ++.++++||++|+|++++|+++++.+.
T Consensus 134 ~~~~~~~a~~~--------~~~~~e~SA~~g~~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 134 VSEGRAXAVVF--------DXKFIETSAAVQHNVKELFEGIVRQVR 171 (192)
T ss_dssp HHHHHHHHHHT--------TCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--------CCceEEeccccCCCHHHHHHHHHHHHH
Confidence 21 11222 246999999999999999999998874
No 108
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.73 E-value=3.1e-22 Score=129.36 Aligned_cols=130 Identities=18% Similarity=0.246 Sum_probs=92.7
Q ss_pred CCcccceee---EEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~---~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+. .++...+.+.+|||||++++...+..+++.+|++++|+|++++.+++... .|+..+... ..++|+
T Consensus 60 ~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~--~~~~pi 137 (204)
T 3th5_A 60 IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH--CPNTPI 137 (204)
Confidence 355553332 23455678889999999999999999999999999999999998888876 566655432 237999
Q ss_pred EEEeeCCCCCCCCCHHHHHHH---------hCCCCCCCCce-eEEEeecccCCChHHHHHHHHHhh
Q 032598 78 LVLGNKIDKPEALSKEDLMEQ---------MGLKSITDREV-CCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 78 ivv~nK~D~~~~~~~~~~~~~---------~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
++++||+|+.+.....+.... .........+. .++++||++|+|++++|++|.+.+
T Consensus 138 ilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 138 ILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 999999999754321111000 00001111233 689999999999999999998765
No 109
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.83 E-value=9.2e-20 Score=115.05 Aligned_cols=123 Identities=21% Similarity=0.331 Sum_probs=90.5
Q ss_pred ceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 86 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 86 (137)
+....+..++..+.+|||||++++...+..+++.+|++++|+|+++....... ..+..+. ..++|+++++||+|+
T Consensus 45 ~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~l~~~~----~~~~p~ilv~nK~Dl 119 (178)
T 2lkc_A 45 IGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTV-EAINHAK----AANVPIIVAINKMDK 119 (178)
T ss_dssp CCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHH-HHHHHHG----GGSCCEEEEEETTTS
T ss_pred eeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHH----hCCCCEEEEEECccC
Confidence 44456777889999999999999998888889999999999999886443332 2333332 247899999999999
Q ss_pred CCCCCHHHHHHHhCCCCC--CC--CceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 87 PEALSKEDLMEQMGLKSI--TD--REVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
... ...++...+..... .. ..+.++++||++|+|++++|++|.+.+..
T Consensus 120 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 171 (178)
T 2lkc_A 120 PEA-NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEM 171 (178)
T ss_dssp SCS-CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHH
T ss_pred CcC-CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhh
Confidence 764 33334443332111 11 13689999999999999999999988765
No 110
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.81 E-value=1.6e-19 Score=118.58 Aligned_cols=125 Identities=14% Similarity=0.094 Sum_probs=84.7
Q ss_pred ceeeEEEeCCEEEEEEecCCc------ccc---HHhHHHHhccCCEEEEEEeCCCCCChHH--HHHHHHHHhcCCCCCCC
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQ------PRF---RSMWERYCRAVSAIVYVVDAADYDNLPV--SRSELHDLLSKPSLNGI 75 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~------~~~---~~~~~~~~~~~~~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~ 75 (137)
.....+..++..+.+|||||+ ++. ...+..++..+|++++|+|+++..+++. ...|+..+... ..++
T Consensus 66 ~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~ 143 (228)
T 2qu8_A 66 LYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNK 143 (228)
T ss_dssp EEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CC
T ss_pred eeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCC
Confidence 444455667899999999999 442 1223455788999999999999877642 23455555442 2479
Q ss_pred cEEEEeeCCCCCCCCCHHH----HHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 76 PLLVLGNKIDKPEALSKED----LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 76 p~ivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
|+++|+||+|+.+...... ....+... ....+.++++||++|+|++++|++|.+.+.+
T Consensus 144 piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 144 SIVIGFNKIDKCNMDSLSIDNKLLIKQILDN--VKNPIKFSSFSTLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp CEEEEEECGGGCC--CCCHHHHHHHHHHHHH--CCSCEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cEEEEEeCcccCCchhhHHHHHHHHHHHHHh--cCCCceEEEEecccCCCHHHHHHHHHHHHHH
Confidence 9999999999976543211 11222100 0012579999999999999999999988764
No 111
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.81 E-value=3.9e-20 Score=126.61 Aligned_cols=127 Identities=18% Similarity=0.218 Sum_probs=95.7
Q ss_pred CCcccceeeEEEe-CCEEEEEEecCCcccc-----HHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCC-CCCC
Q 032598 2 IPTVGFNMRKVTK-GNVTIKLWDLGGQPRF-----RSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKP-SLNG 74 (137)
Q Consensus 2 ~pt~~~~~~~~~~-~~~~~~~~Dt~g~~~~-----~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~ 74 (137)
.||++..+..+.. +++.+.+|||||++++ ...+..+++++|++++|+|+++..+++.+..|...+.... ..++
T Consensus 36 ~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~ 115 (307)
T 3r7w_A 36 GATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPD 115 (307)
T ss_dssp CCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTT
T ss_pred CCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCC
Confidence 5788888877764 6899999999999988 6788889999999999999999999988866644333210 1257
Q ss_pred CcEEEEeeCCCCCCCCCH--------H---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 75 IPLLVLGNKIDKPEALSK--------E---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 75 ~p~ivv~nK~D~~~~~~~--------~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+|+++++||+|+.+.... . ++...++. ..++++++||++ .|+.++|..+++.+.
T Consensus 116 ~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~-----~~~~~~~tSa~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 116 AKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGF-----PNLIGFPTSIWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp CEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTC-----CSCEEEECCTTS-SHHHHHHHHHHHTTC
T ss_pred CeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCC-----CCeEEEEeeecC-ChHHHHHHHHHHHHc
Confidence 999999999999762111 1 12222221 135799999999 899999999887654
No 112
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.81 E-value=4.4e-19 Score=111.13 Aligned_cols=113 Identities=19% Similarity=0.192 Sum_probs=84.7
Q ss_pred ceeeEEEeCCEEEEEEecCCccccH------HhHHHHhc--cCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFR------SMWERYCR--AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~------~~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.....+..++..+.+|||||++++. .+...+++ .++++++|+|+++. +....|+..+.. .++|++
T Consensus 40 ~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~---~~~~~~~~~~~~----~~~p~i 112 (165)
T 2wji_A 40 KKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL---ERNLYLTLQLME----MGANLL 112 (165)
T ss_dssp CCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCH---HHHHHHHHHHHH----TTCCEE
T ss_pred eeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCch---hHhHHHHHHHHh----cCCCEE
Confidence 4445566778999999999998764 45566665 89999999999863 344456655543 368999
Q ss_pred EEeeCCCCCCCC----CHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 79 VLGNKIDKPEAL----SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 79 vv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+++||+|+.... ...++...++. +++++||++|+|++++|+++.+.+.
T Consensus 113 lv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~SA~~~~~v~~l~~~l~~~~~ 164 (165)
T 2wji_A 113 LALNKMDLAKSLGIEIDVDKLEKILGV--------KVVPLSAAKKMGIEELKKAISIAVK 164 (165)
T ss_dssp EEEECHHHHHHTTCCCCHHHHHHHHTS--------CEEECBGGGTBSHHHHHHHHHHHTT
T ss_pred EEEEchHhccccChhhHHHHHHHHhCC--------CEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 999999985322 23445555543 4999999999999999999998764
No 113
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.81 E-value=4.3e-20 Score=126.07 Aligned_cols=118 Identities=14% Similarity=0.049 Sum_probs=92.2
Q ss_pred CCCcccceeeE-EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCC-ChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 1 MIPTVGFNMRK-VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD-NLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 1 ~~pt~~~~~~~-~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
+.||+|..+.. +..++ ++.+||| +++++.+++.+++++|++++|+|++++. ++..+..|+..+.. .++|++
T Consensus 47 ~~pTiGd~~~~~~~~~~-~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~----~~~pii 119 (301)
T 1u0l_A 47 LKIYVGDRVEYTPDETG-SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETV 119 (301)
T ss_dssp CCCCTTCEEEEECCCSS-SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEE
T ss_pred CCCCCccEEEEEEcCCC-eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----CCCCEE
Confidence 46999966553 22233 7999999 9999999999999999999999999987 68888888876643 479999
Q ss_pred EEeeCCCCCCCCCH---HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHH
Q 032598 79 VLGNKIDKPEALSK---EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 79 vv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
+|+||+|+.+.... .+....++.. +.++++||++|+|++++|..+..
T Consensus 120 lv~NK~DL~~~~~v~~~~~~~~~~~~~------~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 120 MVINKMDLYDEDDLRKVRELEEIYSGL------YPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp EEECCGGGCCHHHHHHHHHHHHHHTTT------SCEEECCTTTCTTHHHHHHHHSS
T ss_pred EEEeHHHcCCchhHHHHHHHHHHHhhh------CcEEEEECCCCcCHHHHHHHhcC
Confidence 99999999754332 2334444321 46999999999999999988754
No 114
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.81 E-value=2.6e-19 Score=114.63 Aligned_cols=108 Identities=20% Similarity=0.227 Sum_probs=82.7
Q ss_pred EEEEEecCC----------ccccHHhHHHHhccC---CEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCC
Q 032598 18 TIKLWDLGG----------QPRFRSMWERYCRAV---SAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 84 (137)
Q Consensus 18 ~~~~~Dt~g----------~~~~~~~~~~~~~~~---~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 84 (137)
++.+||||| ++.+...+..+++.+ |++++|+|+++..+..... ....+.. .++|+++++||+
T Consensus 70 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~----~~~p~i~v~nK~ 144 (195)
T 1svi_A 70 ELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY----YGIPVIVIATKA 144 (195)
T ss_dssp TEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH----TTCCEEEEEECG
T ss_pred cEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEECc
Confidence 799999999 778888888888887 9999999999987766532 1122211 568999999999
Q ss_pred CCCCCCCHH----HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 85 DKPEALSKE----DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 85 D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
|+.+..... ++.+.++. ...+.++++||++|+|++++|++|.+.+.
T Consensus 145 Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 145 DKIPKGKWDKHAKVVRQTLNI----DPEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp GGSCGGGHHHHHHHHHHHHTC----CTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred ccCChHHHHHHHHHHHHHHcc----cCCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 998765443 33333432 23467999999999999999999998775
No 115
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.80 E-value=9.1e-20 Score=125.38 Aligned_cols=133 Identities=17% Similarity=0.229 Sum_probs=93.8
Q ss_pred CCcccceee-EEEeC--CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMR-KVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~-~~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+. .+..+ .+.+.+|||||++.+...+..+++.+|++++|+|+++..+++.+. .|+..+.... .++|+
T Consensus 185 ~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ 262 (332)
T 2wkq_A 185 IPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC--PNTPI 262 (332)
T ss_dssp CCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTSCE
T ss_pred CCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhC--CCCcE
Confidence 466664443 23333 466779999999999999999999999999999999988888876 5666665432 37999
Q ss_pred EEEeeCCCCCCCCCHHHHHHHhCCCCC---------CCCc-eeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 78 LVLGNKIDKPEALSKEDLMEQMGLKSI---------TDRE-VCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 78 ivv~nK~D~~~~~~~~~~~~~~~~~~~---------~~~~-~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
++++||+|+.+.....+.......... ...+ ..++++||++|+|++++|+++.+.+.+.
T Consensus 263 ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 263 ILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp EEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred EEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHhcC
Confidence 999999998643111111111000000 0012 2699999999999999999999987653
No 116
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.80 E-value=4.2e-19 Score=110.25 Aligned_cols=114 Identities=15% Similarity=0.202 Sum_probs=82.1
Q ss_pred ceeeEEEeCCEEEEEEecCCccc-------cHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEE
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPR-------FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLV 79 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~-------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 79 (137)
.....+..++..+.+|||||+.. +...+..+++.+|++++|+|+++..+... .++...... .++|+++
T Consensus 39 ~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~--~~~~~~~~~---~~~p~il 113 (161)
T 2dyk_A 39 LKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQAD--YEVAEYLRR---KGKPVIL 113 (161)
T ss_dssp CEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHH--HHHHHHHHH---HTCCEEE
T ss_pred ceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhH--HHHHHHHHh---cCCCEEE
Confidence 44455667788999999999987 45667778999999999999998644432 333333322 4689999
Q ss_pred EeeCCCCCCCCCHHHHHHHhCCCCCCCCce-eEEEeecccCCChHHHHHHHHHhh
Q 032598 80 LGNKIDKPEALSKEDLMEQMGLKSITDREV-CCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 80 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
++||+|+.+... .. ..+. ..++ .++++||++|+|++++|+++.+.+
T Consensus 114 v~nK~Dl~~~~~--~~-~~~~-----~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 114 VATKVDDPKHEL--YL-GPLY-----GLGFGDPIPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp EEECCCSGGGGG--GC-GGGG-----GGSSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred EEECcccccchH--hH-HHHH-----hCCCCCeEEEecccCCChHHHHHHHHHhC
Confidence 999999975421 11 1111 1122 589999999999999999998764
No 117
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.79 E-value=3.9e-19 Score=112.18 Aligned_cols=116 Identities=12% Similarity=0.156 Sum_probs=82.9
Q ss_pred ceeeEEEeCCEEEEEEecCCccccHHh--------HHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFRSM--------WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~~~--------~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
+....+..++..+.+|||||++++... ...+++.+|++++|+|+++..+++. ..|+..+.... ..++|++
T Consensus 42 ~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~-~~~~p~i 119 (172)
T 2gj8_A 42 VLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDP-AEIWPEFIARL-PAKLPIT 119 (172)
T ss_dssp CEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHS-CTTCCEE
T ss_pred eeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhc-ccCCCEE
Confidence 334556677888999999998653211 1245789999999999999887763 35655554432 2479999
Q ss_pred EEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 79 VLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 79 vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+|+||+|+.+.... + .......++++||++|+|++++|++|.+.+.
T Consensus 120 lv~NK~Dl~~~~~~------~----~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 120 VVRNKADITGETLG------M----SEVNGHALIRLSARTGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp EEEECHHHHCCCCE------E----EEETTEEEEECCTTTCTTHHHHHHHHHHHC-
T ss_pred EEEECccCCcchhh------h----hhccCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 99999998542110 0 0112457999999999999999999998765
No 118
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.79 E-value=2.5e-19 Score=120.10 Aligned_cols=112 Identities=18% Similarity=0.258 Sum_probs=89.4
Q ss_pred cCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHH---HHhcCCC-CCCCcEEEEeeC-CCCCCCCCHHHHHHH
Q 032598 24 LGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELH---DLLSKPS-LNGIPLLVLGNK-IDKPEALSKEDLMEQ 98 (137)
Q Consensus 24 t~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~---~~~~~~~-~~~~p~ivv~nK-~D~~~~~~~~~~~~~ 98 (137)
.+||.+.+++|++|++++|++|||+|++|.+.++ ....+. .++.... ..+.|++|++|| .|+.+..+..++.+.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~ 272 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 272 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence 4789999999999999999999999999987665 444333 3333221 367999999997 589888888999999
Q ss_pred hCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhcC
Q 032598 99 MGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSKS 137 (137)
Q Consensus 99 ~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~ 137 (137)
++.... .+.|++..|||++|+|+.+.++||++.+.+++
T Consensus 273 L~L~~l-~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~ 310 (312)
T 3l2o_B 273 LHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESKR 310 (312)
T ss_dssp TTGGGG-CSCEEEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred cCCccC-CCcEEEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence 987665 47899999999999999999999999987654
No 119
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.79 E-value=8.3e-19 Score=112.03 Aligned_cols=129 Identities=17% Similarity=0.107 Sum_probs=84.7
Q ss_pred CCcccceeeE-EEeCCEEEEEEecCC----------ccccHHhHHHHhccC---CEEEEEEeCCCCCChHHHHHHHHHHh
Q 032598 2 IPTVGFNMRK-VTKGNVTIKLWDLGG----------QPRFRSMWERYCRAV---SAIVYVVDAADYDNLPVSRSELHDLL 67 (137)
Q Consensus 2 ~pt~~~~~~~-~~~~~~~~~~~Dt~g----------~~~~~~~~~~~~~~~---~~~i~v~d~~~~~~~~~~~~~~~~~~ 67 (137)
.|+.+..... ....+.++.+||||| ++.+...+..+++.+ +++++|+|+++..+..... ....+.
T Consensus 52 ~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-~~~~~~ 130 (195)
T 3pqc_A 52 SKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLM-MVEWMK 130 (195)
T ss_dssp CSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHH
T ss_pred cCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHH-HHHHHH
Confidence 3555533322 222345788999999 677888888888776 9999999998765543321 111221
Q ss_pred cCCCCCCCcEEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 68 SKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 68 ~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
. .++|+++|+||+|+.+........+.+.........++++++||++|+|++++|++|.+.+.+
T Consensus 131 ~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 131 S----LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp H----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred H----cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 1 268999999999997654433222222110001123569999999999999999999998764
No 120
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.78 E-value=3.7e-20 Score=123.73 Aligned_cols=119 Identities=13% Similarity=0.079 Sum_probs=84.6
Q ss_pred EEeCCEEEEEEe-----------------------cCCccccHHhHHHHhc---------------------cCCEEEEE
Q 032598 12 VTKGNVTIKLWD-----------------------LGGQPRFRSMWERYCR---------------------AVSAIVYV 47 (137)
Q Consensus 12 ~~~~~~~~~~~D-----------------------t~g~~~~~~~~~~~~~---------------------~~~~~i~v 47 (137)
++...+.+.+|| ++|++++..++..+++ ++|++++|
T Consensus 90 ~~~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV 169 (255)
T 3c5h_A 90 EDCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLG 169 (255)
T ss_dssp ------CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEE
T ss_pred cCCcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEE
Confidence 345678999999 6677777777777776 79999999
Q ss_pred EeCCCC--CChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHH
Q 032598 48 VDAADY--DNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 125 (137)
Q Consensus 48 ~d~~~~--~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 125 (137)
+|++++ .+++.+..|+..+.......++|+++|+||+|+.+.....+....... ..++.++++||++|+|++++
T Consensus 170 ~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~----~~~~~~~e~SAk~g~gv~el 245 (255)
T 3c5h_A 170 IDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALS----KKNLQVVETSARSNVNVDLA 245 (255)
T ss_dssp EECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHT----SSSCCEEECBTTTTBSHHHH
T ss_pred EECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHh----cCCCeEEEEECCCCCCHHHH
Confidence 999998 899999999888765322257999999999999654333222221111 12346999999999999999
Q ss_pred HHHHHHhhh
Q 032598 126 IDWLVKHSK 134 (137)
Q Consensus 126 ~~~i~~~~~ 134 (137)
|++|++.+.
T Consensus 246 f~~l~~~l~ 254 (255)
T 3c5h_A 246 FSTLVQLID 254 (255)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999998764
No 121
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.78 E-value=9.5e-20 Score=116.08 Aligned_cols=131 Identities=19% Similarity=0.192 Sum_probs=88.5
Q ss_pred CcccceeeEEEeCCEEEEEEecCC-----------ccccHHhHHHHhcc-CCEEEEEEeCCCCCChHHH-HHHHHH----
Q 032598 3 PTVGFNMRKVTKGNVTIKLWDLGG-----------QPRFRSMWERYCRA-VSAIVYVVDAADYDNLPVS-RSELHD---- 65 (137)
Q Consensus 3 pt~~~~~~~~~~~~~~~~~~Dt~g-----------~~~~~~~~~~~~~~-~~~~i~v~d~~~~~~~~~~-~~~~~~---- 65 (137)
|++......+... .+.+||||| ++.+...+..+++. ++++++++++.+..++... ..|...
T Consensus 32 ~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~ 109 (190)
T 2cxx_A 32 PGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIP 109 (190)
T ss_dssp TTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCC
T ss_pred CCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccH
Confidence 4444444455544 789999999 67788888888887 7766666666666666654 344321
Q ss_pred ----HhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 66 ----LLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 66 ----~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
+.......++|+++++||+|+.... ...++...++... ......++++||++|+|++++|+++.+.+.++
T Consensus 110 ~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 110 IDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPL-SEIDKVFIPISAKFGDNIERLKNRIFEVIRER 185 (190)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCG-GGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhhh-hccCCcEEEEecCCCCCHHHHHHHHHHhcchh
Confidence 1111112579999999999997653 2344555555421 00123589999999999999999999988653
No 122
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.77 E-value=6.1e-18 Score=115.80 Aligned_cols=120 Identities=18% Similarity=0.132 Sum_probs=88.7
Q ss_pred eEEEeC-CEEEEEEecCCccccH----------HhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 10 RKVTKG-NVTIKLWDLGGQPRFR----------SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 10 ~~~~~~-~~~~~~~Dt~g~~~~~----------~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
..+..+ +.++.+|||||+.+.. ..+..+++.+|++++|+|+++..+......|+..+.. .++|++
T Consensus 51 ~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvi 126 (308)
T 3iev_A 51 GVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVI 126 (308)
T ss_dssp EEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEE
T ss_pred EEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEE
Confidence 345666 8999999999985433 5667788999999999999998888876666666644 468999
Q ss_pred EEeeCCCCC-CCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 79 VLGNKIDKP-EALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 79 vv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++||+|+. +..........+.... .....++++||++|+|++++++++.+.+.+
T Consensus 127 lV~NK~Dl~~~~~~~~~~~~~l~~~~--~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 127 VVINKIDKIGPAKNVLPLIDEIHKKH--PELTEIVPISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp EEEECGGGSSSGGGGHHHHHHHHHHC--TTCCCEEECBTTTTBSHHHHHHHHHHHSCB
T ss_pred EEEECccCCCCHHHHHHHHHHHHHhc--cCCCeEEEEeCCCCCCHHHHHHHHHHhCcc
Confidence 999999997 3333322222221100 012359999999999999999999987753
No 123
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.77 E-value=4.4e-18 Score=108.27 Aligned_cols=115 Identities=21% Similarity=0.211 Sum_probs=88.2
Q ss_pred ceeeEEEeCCEEEEEEecCCccccH------HhHHHHhc--cCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFR------SMWERYCR--AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~------~~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.....+..++..+.+|||||++.+. .++..+++ .++++++|+|.++ ++....|+..+.. .++|++
T Consensus 44 ~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~pii 116 (188)
T 2wjg_A 44 KKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLME----MGANLL 116 (188)
T ss_dssp EEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEE
T ss_pred ceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHHh----cCCCEE
Confidence 4445677788999999999998774 45666765 4999999999975 5555667666654 478999
Q ss_pred EEeeCCCCCCCC----CHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 79 VLGNKIDKPEAL----SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 79 vv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
+++||+|+.... ...++...++. .++++||++|+|++++|+++.+.+.++
T Consensus 117 lv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 117 LALNKMDLAKSLGIEIDVDKLEKILGV--------KVVPLSAAKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp EEEECHHHHHHTTCCCCHHHHHHHHTS--------CEEECBGGGTBSHHHHHHHHHHHHTTC
T ss_pred EEEEhhhccccccchHHHHHHHHHhCC--------CeEEEEecCCCCHHHHHHHHHHHHHhc
Confidence 999999985432 34455555543 499999999999999999999987653
No 124
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.74 E-value=2.6e-18 Score=112.14 Aligned_cols=117 Identities=15% Similarity=0.173 Sum_probs=79.9
Q ss_pred eCCEEEEEEecCC----------ccccHHhHHHHhcc---CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 14 KGNVTIKLWDLGG----------QPRFRSMWERYCRA---VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 14 ~~~~~~~~~Dt~g----------~~~~~~~~~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
.++..+.+||||| ++.+...+..+++. +|++++|+|+++..+... ..++..+.. .++|+++|
T Consensus 76 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~l~~----~~~p~i~v 150 (223)
T 4dhe_A 76 AAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELD-RRMIEWFAP----TGKPIHSL 150 (223)
T ss_dssp TTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHGG----GCCCEEEE
T ss_pred CCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHH-HHHHHHHHh----cCCCEEEE
Confidence 3468899999999 45557777778776 777999999988544322 233333332 56899999
Q ss_pred eeCCCCCCCCCHHH----HHHHhCCC--CCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 81 GNKIDKPEALSKED----LMEQMGLK--SITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 81 ~nK~D~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+||+|+........ +...+... ......++++++||++|+|+++++++|.+.+..
T Consensus 151 ~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 151 LTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred EeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 99999976433221 22222110 000135679999999999999999999988753
No 125
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.74 E-value=9.3e-17 Score=118.07 Aligned_cols=109 Identities=20% Similarity=0.245 Sum_probs=87.6
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH---
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK--- 92 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--- 92 (137)
++.+++|||||+.++...+..+++.+|++++|+|+++..+.+....|..... .++|+++++||+|+......
T Consensus 70 ~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~-----~~ipiIvViNKiDl~~a~~~~v~ 144 (599)
T 3cb4_D 70 TYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME-----MDLEVVPVLNKIDLPAADPERVA 144 (599)
T ss_dssp EEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH-----TTCEEEEEEECTTSTTCCHHHHH
T ss_pred eEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-----CCCCEEEeeeccCcccccHHHHH
Confidence 4899999999999999999999999999999999999877776666655442 46899999999999765422
Q ss_pred HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 93 EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
.++.+.++... ..++++||++|.|++++++++.+.+.
T Consensus 145 ~ei~~~lg~~~-----~~vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 145 EEIEDIVGIDA-----TDAVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp HHHHHHTCCCC-----TTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred HHHHHHhCCCc-----ceEEEeecccCCCchhHHHHHhhcCC
Confidence 34445444321 23899999999999999999998764
No 126
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.74 E-value=2.5e-17 Score=106.01 Aligned_cols=127 Identities=20% Similarity=0.332 Sum_probs=94.2
Q ss_pred CCccccee--eEEEeCC--EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~--~~~~~~~--~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||+|..+ ..+..++ +.+.+|||+|++.++..+..+++.++++++|+|+++..+++.+..|+..+... ...+.|+
T Consensus 35 ~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i 113 (199)
T 2f9l_A 35 KSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDH-ADSNIVI 113 (199)
T ss_dssp -CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEE
T ss_pred CCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCeE
Confidence 47777443 4455444 67889999999999888899999999999999999987787777777666432 1246899
Q ss_pred EEEeeCCCCCCCCC--HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 78 LVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 78 ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
++++||+|+.+... .... ..+.. ..++.++++||+++.|++++|++|.+.+.
T Consensus 114 ~~v~nK~Dl~~~~~~~~~~a-~~l~~----~~~~~~~d~Sal~~~~i~~l~~~l~~~~~ 167 (199)
T 2f9l_A 114 MLVGNKSDLRHLRAVPTDEA-RAFAE----KNNLSFIETSALDSTNVEEAFKNILTEIY 167 (199)
T ss_dssp EEEEECTTCGGGCCSCHHHH-HHHHH----HTTCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEECcccccccCcCHHHH-HHHHH----HcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999965432 2222 22211 12346899999999999999999998775
No 127
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.74 E-value=4.7e-17 Score=111.06 Aligned_cols=115 Identities=20% Similarity=0.225 Sum_probs=83.9
Q ss_pred EEEeCCEEEEEEecCCccc--------cHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEee
Q 032598 11 KVTKGNVTIKLWDLGGQPR--------FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGN 82 (137)
Q Consensus 11 ~~~~~~~~~~~~Dt~g~~~--------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 82 (137)
.+..++.++.+|||||..+ +......+++.+|++++|+|+++..+.. ..++...+... ..++|+++++|
T Consensus 49 i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~-~~~~p~ilV~N 125 (301)
T 1wf3_A 49 ILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPL-VGKVPILLVGN 125 (301)
T ss_dssp EEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGG-TTTSCEEEEEE
T ss_pred EEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhh-cCCCCEEEEEE
Confidence 3556789999999999876 4566677889999999999999865543 34443333321 14799999999
Q ss_pred CCCCCCCCC-HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 83 KIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 83 K~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
|+|+.+... ..+....+ . ....++++||++|.|++++++++.+.+.
T Consensus 126 K~Dl~~~~~~~~~~~~~~-~-----~~~~~~~iSA~~g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 126 KLDAAKYPEEAMKAYHEL-L-----PEAEPRMLSALDERQVAELKADLLALMP 172 (301)
T ss_dssp CGGGCSSHHHHHHHHHHT-S-----TTSEEEECCTTCHHHHHHHHHHHHTTCC
T ss_pred CcccCCchHHHHHHHHHh-c-----CcCcEEEEeCCCCCCHHHHHHHHHHhcc
Confidence 999975433 33333433 1 1235899999999999999999988653
No 128
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.74 E-value=4.9e-18 Score=123.88 Aligned_cols=124 Identities=20% Similarity=0.291 Sum_probs=86.7
Q ss_pred CCcccceeeEE------------EeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcC
Q 032598 2 IPTVGFNMRKV------------TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSK 69 (137)
Q Consensus 2 ~pt~~~~~~~~------------~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~ 69 (137)
.||+|.++.+. +.++..+.+|||||++.+...+..+++.+|++++|+|+++. +....|+..+...
T Consensus 71 ~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~ 147 (535)
T 3dpu_A 71 SQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKY 147 (535)
T ss_dssp ----CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG---GGHHHHHHHHHHH
T ss_pred CCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc---hhHHHHHHHHHHh
Confidence 47787666532 12368999999999999999999999999999999999865 4455677666553
Q ss_pred CCCCCCcEEEEeeCCCCCCCCC--HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 70 PSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 70 ~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
. .+.|+++|+||+|+.+... .......+... ++.++++||++|+|++++++++.+.+.+
T Consensus 148 ~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~-----~~~~~~vSA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 148 G--GKSPVIVVMNKIDENPSYNIEQKKINERFPAI-----ENRFHRISCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp S--SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGG-----TTCEEECCC-----CTTHHHHHHHHHTC
T ss_pred C--CCCCEEEEEECCCcccccccCHHHHHHHHHhc-----CCceEEEecCcccCHHHHHHHHHHHHhc
Confidence 2 4689999999999976543 23333333221 2359999999999999999999988764
No 129
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.73 E-value=4.2e-17 Score=109.12 Aligned_cols=113 Identities=17% Similarity=0.227 Sum_probs=85.4
Q ss_pred ceeeEEEeCCEEEEEEecCCccccHH------hHHHHh--ccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFRS------MWERYC--RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~~------~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.....+..++..+.+|||||+..+.+ +...++ +.+|++++|+|+++.++ ...|...+.. .++|++
T Consensus 42 ~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~---~~~~~~~l~~----~~~pvi 114 (258)
T 3a1s_A 42 KKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQ---SLYLLLEILE----MEKKVI 114 (258)
T ss_dssp EEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHH---HHHHHHHHHT----TTCCEE
T ss_pred EEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhh---HHHHHHHHHh----cCCCEE
Confidence 34445667789999999999987653 335565 58999999999998543 3345555543 379999
Q ss_pred EEeeCCCCCCCC----CHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 79 VLGNKIDKPEAL----SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 79 vv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+++||+|+.... ....+...++. +++++||++|.|++++|+++.+.+.
T Consensus 115 lv~NK~Dl~~~~~i~~~~~~l~~~lg~--------~vi~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 115 LAMTAIDEAKKTGMKIDRYELQKHLGI--------PVVFTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp EEEECHHHHHHTTCCBCHHHHHHHHCS--------CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEECcCCCCccchHHHHHHHHHHcCC--------CEEEEEeeCCcCHHHHHHHHHHHhh
Confidence 999999985322 24556666654 4999999999999999999998764
No 130
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.73 E-value=5.2e-17 Score=116.78 Aligned_cols=117 Identities=15% Similarity=0.092 Sum_probs=75.5
Q ss_pred ceeeEEEeCCEEEEEEecCCccccHHhHHH--------HhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFRSMWER--------YCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~--------~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.....+..++..+.+|||||++.+...+.. +++.+|++++|+|++++.+++....+...+... .++|++
T Consensus 271 ~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l---~~~piI 347 (476)
T 3gee_A 271 YIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAH---PAAKFL 347 (476)
T ss_dssp --CEEEEETTEEEEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC---TTSEEE
T ss_pred EEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc---CCCCEE
Confidence 444567778999999999999876654433 478899999999999988875432222222222 269999
Q ss_pred EEeeCCCCCCCCCHHH--HHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 79 VLGNKIDKPEALSKED--LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 79 vv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+|+||+|+........ +... + .++++++||++|+|+++++++|.+.+.
T Consensus 348 vV~NK~Dl~~~~~~~~~~l~~~-~-------~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 348 TVANKLDRAANADALIRAIADG-T-------GTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp EEEECTTSCTTTHHHHHHHHHH-H-------TSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred EEEECcCCCCccchhHHHHHhc-C-------CCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 9999999976544321 2222 0 125899999999999999999998875
No 131
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.73 E-value=4.7e-18 Score=113.60 Aligned_cols=111 Identities=20% Similarity=0.215 Sum_probs=83.3
Q ss_pred ceeeEEEeCCEEEEEEecCCccccHH----------hHHHHh--ccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCC
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFRS----------MWERYC--RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNG 74 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~~----------~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (137)
.....+..++..+.+|||||+..+.+ ....++ +.+|++++|+|+++.++. ..+...+.. .+
T Consensus 38 ~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~---~~l~~~l~~----~~ 110 (256)
T 3iby_A 38 KKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERH---LYLTSQLFE----LG 110 (256)
T ss_dssp EEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHH---HHHHHHHTT----SC
T ss_pred EEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhH---HHHHHHHHH----cC
Confidence 44556777888999999999977654 556667 889999999999984332 233333332 47
Q ss_pred CcEEEEeeCCCCCCCC----CHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHh
Q 032598 75 IPLLVLGNKIDKPEAL----SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 75 ~p~ivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
+|+++++||+|+.... ....+...++. +++++||++|+|++++++++.+.
T Consensus 111 ~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~--------~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 111 KPVVVALNMMDIAEHRGISIDTEKLESLLGC--------SVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp SCEEEEEECHHHHHHTTCEECHHHHHHHHCS--------CEEECBGGGTBSHHHHHHHHHTC
T ss_pred CCEEEEEEChhcCCcCCcHHHHHHHHHHcCC--------CEEEEECCCCCCHHHHHHHHHhh
Confidence 9999999999985432 23456666654 49999999999999999999876
No 132
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.73 E-value=1e-17 Score=119.52 Aligned_cols=122 Identities=12% Similarity=0.079 Sum_probs=87.5
Q ss_pred eeEEEeCCEEEEEEecCCc----------cccHHhHH-HHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 9 MRKVTKGNVTIKLWDLGGQ----------PRFRSMWE-RYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 9 ~~~~~~~~~~~~~~Dt~g~----------~~~~~~~~-~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
...+..++..+.+|||||+ +.+..... .+++.+|++++|+|+++..+.++. .|...+.. .++|+
T Consensus 215 ~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~i 289 (436)
T 2hjg_A 215 DTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAV 289 (436)
T ss_dssp CEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEE
T ss_pred EEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcE
Confidence 3456677889999999998 55554443 478899999999999998887765 45555543 57999
Q ss_pred EEEeeCCCCCCCCCH--HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALSK--EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|+.+.... .+....+..........+++++||++|+|++++|+.+.+.+.+
T Consensus 290 iiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 290 VIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp EEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred EEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHH
Confidence 999999999765442 2222222110001123469999999999999999999987753
No 133
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.73 E-value=1.3e-16 Score=117.26 Aligned_cols=109 Identities=19% Similarity=0.242 Sum_probs=86.4
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH---
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK--- 92 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--- 92 (137)
.+.+++|||||+.+|...+..+++.+|++++|+|+++..+.+....|..... .++|+++++||+|+......
T Consensus 72 ~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~-----~~ipiIvviNKiDl~~a~~~~v~ 146 (600)
T 2ywe_A 72 TYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE-----QDLVIIPVINKIDLPSADVDRVK 146 (600)
T ss_dssp EEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH-----TTCEEEEEEECTTSTTCCHHHHH
T ss_pred eEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH-----CCCCEEEEEeccCccccCHHHHH
Confidence 4899999999999999999999999999999999999877776666655442 46899999999999765421
Q ss_pred HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 93 EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
.++.+.++.. ...++++||++|.|++++++++++.+-
T Consensus 147 ~el~~~lg~~-----~~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 147 KQIEEVLGLD-----PEEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp HHHHHTSCCC-----GGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHhhCCC-----cccEEEEEeecCCCchHHHHHHHHhcc
Confidence 2333333321 224899999999999999999998764
No 134
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.73 E-value=2.4e-17 Score=116.51 Aligned_cols=113 Identities=18% Similarity=0.114 Sum_probs=87.3
Q ss_pred EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHH---
Q 032598 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE--- 93 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--- 93 (137)
..+.+|||||++++...+..+++.+|++++|+|+++..+..+...++..+... ...|+++++||+|+.+.....
T Consensus 75 ~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~ 151 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQY 151 (403)
T ss_dssp EEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHH
T ss_pred ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHH
Confidence 78999999999999999999999999999999999977676666666555332 235899999999997643222
Q ss_pred -HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 94 -DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 94 -~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
++.+.+.. .....++++++||++|+|+++++++|.+.+.
T Consensus 152 ~~i~~~l~~--~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 152 RQIKQFTKG--TWAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp HHHHHHHTT--STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHHh--hCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 23333321 1223567999999999999999999998653
No 135
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.73 E-value=1.9e-17 Score=118.71 Aligned_cols=123 Identities=12% Similarity=0.069 Sum_probs=86.0
Q ss_pred eeeEEEeCCEEEEEEecCC----------ccccHHhHHH-HhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 8 NMRKVTKGNVTIKLWDLGG----------QPRFRSMWER-YCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 8 ~~~~~~~~~~~~~~~Dt~g----------~~~~~~~~~~-~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
....+..++..+++||||| ++.+...... +++.+|++++|+|+++..+... ..+...+.. .++|
T Consensus 234 ~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~-~~~~~~~~~----~~~~ 308 (456)
T 4dcu_A 234 VDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQD-KRIAGYAHE----AGKA 308 (456)
T ss_dssp TSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH----TTCE
T ss_pred EEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHH-HHHHHHHHH----cCCC
Confidence 3345777888999999999 6777766554 7899999999999998544322 234433332 5699
Q ss_pred EEEEeeCCCCCCCCCH--HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALSK--EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++|+||+|+.+.... .+..+.+.........++++++||++|+|++++|+++.+.+.+
T Consensus 309 ~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 309 VVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp EEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred EEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHH
Confidence 9999999999765432 2222222111001123469999999999999999999987753
No 136
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.73 E-value=1.8e-17 Score=114.80 Aligned_cols=128 Identities=19% Similarity=0.201 Sum_probs=94.0
Q ss_pred CcccceeeEEEeCC-EEEEEEecCCccc----cHHhHHHHh---ccCCEEEEEEeCCC---CCChHHHHHHHHHHhcCC-
Q 032598 3 PTVGFNMRKVTKGN-VTIKLWDLGGQPR----FRSMWERYC---RAVSAIVYVVDAAD---YDNLPVSRSELHDLLSKP- 70 (137)
Q Consensus 3 pt~~~~~~~~~~~~-~~~~~~Dt~g~~~----~~~~~~~~~---~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~- 70 (137)
+|+..+...+...+ ..+.+|||||... +..+...++ +.++++++|+|+++ .++++....|...+....
T Consensus 191 tTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~ 270 (342)
T 1lnz_A 191 TTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNL 270 (342)
T ss_dssp SCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCS
T ss_pred cccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhh
Confidence 45556666676654 7999999999643 333445554 45999999999998 677888878877776642
Q ss_pred CCCCCcEEEEeeCCCCCCCCC-HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 71 SLNGIPLLVLGNKIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 71 ~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
...++|+++|+||+|+..... ..++...+.. .++++++||++++|+++++++|.+.+.+.
T Consensus 271 ~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~------~~~v~~iSA~tg~gi~eL~~~l~~~l~~~ 331 (342)
T 1lnz_A 271 RLTERPQIIVANKMDMPEAAENLEAFKEKLTD------DYPVFPISAVTREGLRELLFEVANQLENT 331 (342)
T ss_dssp STTTSCBCBEEECTTSTTHHHHHHHHHHHCCS------CCCBCCCSSCCSSTTHHHHHHHHHHHTSC
T ss_pred hhcCCCEEEEEECccCCCCHHHHHHHHHHhhc------CCCEEEEECCCCcCHHHHHHHHHHHHhhC
Confidence 235799999999999975321 2334444431 14589999999999999999999988653
No 137
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.72 E-value=4e-16 Score=112.29 Aligned_cols=117 Identities=14% Similarity=0.210 Sum_probs=87.2
Q ss_pred ccceeeEEEeCCEEEEEEecCCcc-ccH--------HhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCC
Q 032598 5 VGFNMRKVTKGNVTIKLWDLGGQP-RFR--------SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGI 75 (137)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~Dt~g~~-~~~--------~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (137)
.......+..++..+.+|||||.. .+. .....+++.+|++++|+|++++.++++.. .++.+ .++
T Consensus 279 ~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~-il~~l------~~~ 351 (482)
T 1xzp_A 279 RDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRK-ILERI------KNK 351 (482)
T ss_dssp SCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHH-HHHHH------TTS
T ss_pred eeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHH-HHHHh------cCC
Confidence 335556777889999999999987 543 23456789999999999999987776532 22222 368
Q ss_pred cEEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 76 PLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 76 p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
|+++|+||+|+.......++..... ..++++++||++|+|+++++++|.+.+.
T Consensus 352 piivV~NK~DL~~~~~~~~~~~~~~------~~~~~i~iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 352 RYLVVINKVDVVEKINEEEIKNKLG------TDRHMVKISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp SEEEEEEECSSCCCCCHHHHHHHHT------CSTTEEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred CEEEEEECcccccccCHHHHHHHhc------CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 9999999999976544444444332 1235899999999999999999998754
No 138
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.70 E-value=1.5e-16 Score=111.23 Aligned_cols=123 Identities=8% Similarity=-0.018 Sum_probs=90.3
Q ss_pred CcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE-EEEe
Q 032598 3 PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL-LVLG 81 (137)
Q Consensus 3 pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~ 81 (137)
+|++..+..+..++.++++|||||+++|...+...++.+|++++|+| ++ ....+...++..+.. .++|. ++++
T Consensus 46 iTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~-g~~~qt~e~~~~~~~----~~i~~~ivvv 119 (370)
T 2elf_A 46 TSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQ-GLDAHTGECIIALDL----LGFKHGIIAL 119 (370)
T ss_dssp EESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TT-CCCHHHHHHHHHHHH----TTCCEEEEEE
T ss_pred EEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CC-CCcHHHHHHHHHHHH----cCCCeEEEEE
Confidence 46677777787788899999999999999888889999999999999 54 344444555444432 35777 8889
Q ss_pred e-CCCCCCCCCH----HHHHHHhCCCCCCCCceeEEE--eeccc---CCChHHHHHHHHHhhh
Q 032598 82 N-KIDKPEALSK----EDLMEQMGLKSITDREVCCYM--ISCKN---STNIDTVIDWLVKHSK 134 (137)
Q Consensus 82 n-K~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~--~Sa~~---~~~v~~~~~~i~~~~~ 134 (137)
| |+|+ +.... .++.+.++.. ....+++++ +||++ ++|++++++.|.+.+.
T Consensus 120 NNK~Dl-~~~~~~~~~~~i~~~l~~~--~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 120 TRSDST-HMHAIDELKAKLKVITSGT--VLQDWECISLNTNKSAKNPFEGVDELKARINEVAE 179 (370)
T ss_dssp CCGGGS-CHHHHHHHHHHHHHHTTTS--TTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHH
T ss_pred EeccCC-CHHHHHHHHHHHHHHHHhc--CCCceEEEecccccccCcCCCCHHHHHHHHHhhcc
Confidence 9 9999 43222 2233333321 123568999 99999 9999999999987653
No 139
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.70 E-value=2.4e-17 Score=110.98 Aligned_cols=104 Identities=22% Similarity=0.303 Sum_probs=80.1
Q ss_pred CEEEEEEecCCccccH------HhHHHHhc--cCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 032598 16 NVTIKLWDLGGQPRFR------SMWERYCR--AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 87 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~------~~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 87 (137)
+..+.+|||||+.++. .+...++. .+|++++|+|+++. +....|...+.. .++|+++++||+|+.
T Consensus 48 ~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~---e~~~~~~~~l~~----~~~p~ilv~NK~Dl~ 120 (272)
T 3b1v_A 48 NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNL---ERNLYLTTQLIE----TGIPVTIALNMIDVL 120 (272)
T ss_dssp CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGH---HHHHHHHHHHHH----TCSCEEEEEECHHHH
T ss_pred CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCch---HhHHHHHHHHHh----cCCCEEEEEEChhhC
Confidence 6789999999998775 56677775 59999999999874 333445555543 479999999999985
Q ss_pred CC----CCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 88 EA----LSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 88 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
.. .....+...++. +++++||++|+|++++|+++.+.+.
T Consensus 121 ~~~~~~~~~~~l~~~lg~--------~vi~~SA~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 121 DGQGKKINVDKLSYHLGV--------PVVATSALKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp HHTTCCCCHHHHHHHHTS--------CEEECBTTTTBSHHHHHHHHHHSCT
T ss_pred CcCCcHHHHHHHHHHcCC--------CEEEEEccCCCCHHHHHHHHHHHHh
Confidence 32 234556666653 4999999999999999999998764
No 140
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.70 E-value=1.8e-17 Score=111.75 Aligned_cols=113 Identities=19% Similarity=0.216 Sum_probs=82.3
Q ss_pred ceeeEEEeCCEEEEEEecCCccccH----------HhHHHHh--ccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCC
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFR----------SMWERYC--RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNG 74 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~----------~~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (137)
.....+...+..+.+|||||+.++. .....++ +.+|++++|+|+++.++ ...+...+.. .+
T Consensus 40 ~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~---~~~~~~~l~~----~~ 112 (274)
T 3i8s_A 40 RKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLER---NLYLTLQLLE----LG 112 (274)
T ss_dssp EEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHH---HHHHHHHHHH----HT
T ss_pred EEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHH---HHHHHHHHHh----cC
Confidence 3344566677899999999987755 2334443 78999999999988433 3333333432 36
Q ss_pred CcEEEEeeCCCCCCCC----CHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 75 IPLLVLGNKIDKPEAL----SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 75 ~p~ivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+|+++++||+|+.+.. ....+...++. +++++||++|+|++++++++.+.+.
T Consensus 113 ~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~--------~~i~~SA~~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 113 IPCIVALNMLDIAEKQNIRIEIDALSARLGC--------PVIPLVSTRGRGIEALKLAIDRYKA 168 (274)
T ss_dssp CCEEEEEECHHHHHHTTEEECHHHHHHHHTS--------CEEECCCGGGHHHHHHHHHHHTCCC
T ss_pred CCEEEEEECccchhhhhHHHHHHHHHHhcCC--------CEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 9999999999986432 23556666654 4999999999999999999988764
No 141
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.70 E-value=6.9e-17 Score=116.46 Aligned_cols=124 Identities=16% Similarity=0.146 Sum_probs=86.6
Q ss_pred cccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeC
Q 032598 4 TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNK 83 (137)
Q Consensus 4 t~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 83 (137)
|+...+..+..++..+++|||||++++...+..+++.+|++++|+|+++.... +....+..+.. .++|.++++||
T Consensus 60 Ti~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~-qt~e~l~~~~~----~~ip~IvviNK 134 (482)
T 1wb1_A 60 TIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKT-QTGEHMLILDH----FNIPIIVVITK 134 (482)
T ss_dssp ----CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCH-HHHHHHHHHHH----TTCCBCEEEEC
T ss_pred EEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccH-HHHHHHHHHHH----cCCCEEEEEEC
Confidence 45555666777889999999999999999999999999999999999885322 22233332221 46888999999
Q ss_pred CCCCCCCCHH----HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 84 IDKPEALSKE----DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 84 ~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
+|+.+..... ++.+.+... .....++++++||++|+|+++++++|.+.+
T Consensus 135 ~Dl~~~~~~~~~~~~l~~~l~~~-~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i 187 (482)
T 1wb1_A 135 SDNAGTEEIKRTEMIMKSILQST-HNLKNSSIIPISAKTGFGVDELKNLIITTL 187 (482)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHS-SSGGGCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCcccchhHHHHHHHHHHHHhhh-cccccceEEEEECcCCCCHHHHHHHHHHhh
Confidence 9997532222 222222111 011245799999999999999999999865
No 142
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.70 E-value=3.6e-16 Score=113.67 Aligned_cols=82 Identities=21% Similarity=0.179 Sum_probs=66.1
Q ss_pred cccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeC
Q 032598 4 TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNK 83 (137)
Q Consensus 4 t~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 83 (137)
|+......+..++..+++|||||+.++...+..+++.+|++++|+|+++..+.+....| ..+.. .++|+++++||
T Consensus 69 Ti~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~----~~iPiivviNK 143 (528)
T 3tr5_A 69 SVTTSVMQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL----RHTPIMTFINK 143 (528)
T ss_dssp SSSSSEEEEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT----TTCCEEEEEEC
T ss_pred eEEEeEEEEEeCCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH----cCCCEEEEEeC
Confidence 44455667888899999999999999999999999999999999999997666554433 33322 47899999999
Q ss_pred CCCCCCC
Q 032598 84 IDKPEAL 90 (137)
Q Consensus 84 ~D~~~~~ 90 (137)
+|+....
T Consensus 144 ~Dl~~~~ 150 (528)
T 3tr5_A 144 MDRDTRP 150 (528)
T ss_dssp TTSCCSC
T ss_pred CCCcccc
Confidence 9997653
No 143
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.69 E-value=2.7e-16 Score=109.57 Aligned_cols=125 Identities=20% Similarity=0.213 Sum_probs=88.8
Q ss_pred cccceeeEEEeCCEEEEEEecCCccccH---------HhHHHHhccCCEEEEEEeCCCCC--ChHHHHHHHHHHhcCCCC
Q 032598 4 TVGFNMRKVTKGNVTIKLWDLGGQPRFR---------SMWERYCRAVSAIVYVVDAADYD--NLPVSRSELHDLLSKPSL 72 (137)
Q Consensus 4 t~~~~~~~~~~~~~~~~~~Dt~g~~~~~---------~~~~~~~~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~ 72 (137)
|.+.....+..++..+.+|||||..... .....+...+|++++|+|+++.. +++....|+..+....
T Consensus 201 t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~-- 278 (357)
T 2e87_A 201 TRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF-- 278 (357)
T ss_dssp SSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT--
T ss_pred eeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc--
Confidence 4445556666778899999999985421 12223345699999999998876 6777777877776532
Q ss_pred CCCcEEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 73 NGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 73 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
.++|+++|+||+|+.......+....... ..++++++||++|+|++++++++.+.+..
T Consensus 279 ~~~piilV~NK~Dl~~~~~~~~~~~~~~~-----~~~~~~~iSA~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 279 KDLPFLVVINKIDVADEENIKRLEKFVKE-----KGLNPIKISALKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp TTSCEEEEECCTTTCCHHHHHHHHHHHHH-----TTCCCEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECcccCChHHHHHHHHHHHh-----cCCCeEEEeCCCCcCHHHHHHHHHHHHHH
Confidence 27999999999999754333222222211 12458999999999999999999988753
No 144
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.69 E-value=2.2e-16 Score=111.79 Aligned_cols=113 Identities=16% Similarity=0.145 Sum_probs=75.7
Q ss_pred EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC----H
Q 032598 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS----K 92 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----~ 92 (137)
..+.+|||||++++...+...+..+|++++|+|+++..+..+....+..+... ...|+++++||+|+.+... .
T Consensus 81 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l---~~~~iivv~NK~Dl~~~~~~~~~~ 157 (408)
T 1s0u_A 81 RRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL---GIDKIIIVQNKIDLVDEKQAEENY 157 (408)
T ss_dssp EEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECTTSSCTTTTTTHH
T ss_pred cEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc---CCCeEEEEEEccCCCCHHHHHHHH
Confidence 78999999999999888877788899999999999764233333333333211 2357999999999976432 2
Q ss_pred HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 93 EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
.++.+.+... ....++++++||++|+|+++++++|.+.+.
T Consensus 158 ~~i~~~l~~~--~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 158 EQIKEFVKGT--IAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp HHHHHHHTTS--TTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHHHHHHhhc--CCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 3344444321 123567999999999999999999998653
No 145
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.69 E-value=1.9e-16 Score=112.33 Aligned_cols=117 Identities=16% Similarity=0.150 Sum_probs=84.8
Q ss_pred cceeeEEEeCCE-EEEEEecCCccccHHh-------HHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 6 GFNMRKVTKGNV-TIKLWDLGGQPRFRSM-------WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 6 ~~~~~~~~~~~~-~~~~~Dt~g~~~~~~~-------~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
......+...+. .+.+|||||+.++... ...+++.+|++++|+|++. ......|+..+... ++|+
T Consensus 71 d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~---~~~~~~~l~~l~~~----~~pi 143 (423)
T 3qq5_A 71 DPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAP---TPYEDDVVNLFKEM----EIPF 143 (423)
T ss_dssp CCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSC---CHHHHHHHHHHHHT----TCCE
T ss_pred eeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCC---hHHHHHHHHHHHhc----CCCE
Confidence 344455555544 8999999999766433 4567899999999999832 23334566655443 7999
Q ss_pred EEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 78 LVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 78 ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
++|+||+|+...... +....+.. ..++.++++||++|+|++++|++|.+.+.
T Consensus 144 IvV~NK~Dl~~~~~~-~~~~~l~~----~~g~~v~~vSAktg~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 144 VVVVNKIDVLGEKAE-ELKGLYES----RYEAKVLLVSALQKKGFDDIGKTISEILP 195 (423)
T ss_dssp EEECCCCTTTTCCCT-HHHHHSSC----CTTCCCCCCSSCCTTSTTTHHHHHHHHSC
T ss_pred EEEEeCcCCCCccHH-HHHHHHHH----HcCCCEEEEECCCCCCHHHHHHHHHHhhh
Confidence 999999999876654 33344432 12346999999999999999999998874
No 146
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.69 E-value=2.9e-16 Score=100.52 Aligned_cols=127 Identities=20% Similarity=0.316 Sum_probs=93.1
Q ss_pred CCccccee--eEEEeCC--EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~--~~~~~~~--~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+ ..+..++ +.+.+|||+|++++...+..+++.++++++|+|.++..+++.+..|+..+... ...+.|+
T Consensus 59 ~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i 137 (191)
T 1oix_A 59 KSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDH-ADSNIVI 137 (191)
T ss_dssp CCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEE
T ss_pred CCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcE
Confidence 47777443 4455544 56678999999999999999999999999999999877777777777665432 1246899
Q ss_pred EEEeeCCCCCCCCCH-HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 78 LVLGNKIDKPEALSK-EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 78 ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
++++||+|+.+.... ......+.. ..++.++++||+++.|++++|+++.+.+
T Consensus 138 ~~v~nK~Dl~~~~~~~~~~a~~l~~----~~~~~~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 138 MLVGNKSDLRHLRAVPTDEARAFAE----KNGLSFIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp EEEEECGGGGGGCCSCHHHHHHHHH----HTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEECcccccccccCHHHHHHHHH----HcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 999999998653321 122222211 1234689999999999999999998765
No 147
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.68 E-value=3.9e-16 Score=111.34 Aligned_cols=116 Identities=12% Similarity=0.009 Sum_probs=79.7
Q ss_pred cceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCC
Q 032598 6 GFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 85 (137)
Q Consensus 6 ~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 85 (137)
...+..+..++..+.+|||||+++|...+..+++.+|++++|+|+++.... +...++..+... .-.|+++++||+|
T Consensus 93 ~~~~~~~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~-qt~~~l~~~~~~---~~~~iIvviNK~D 168 (434)
T 1zun_B 93 DVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT-QTRRHSYIASLL---GIKHIVVAINKMD 168 (434)
T ss_dssp CCEEEEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH-HHHHHHHHHHHT---TCCEEEEEEECTT
T ss_pred EeeeeEeecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEEcCc
Confidence 344555677889999999999999999999999999999999999986533 333344333221 2236999999999
Q ss_pred CCCCCC--H----HHHHHHhCCCCCCCCceeEEEeecccCCChHHH
Q 032598 86 KPEALS--K----EDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 125 (137)
Q Consensus 86 ~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 125 (137)
+.+... . .++...+.........++++++||++|+|++++
T Consensus 169 l~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 169 LNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred CCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 976321 1 112222221111123578999999999999874
No 148
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.68 E-value=3.8e-16 Score=111.51 Aligned_cols=120 Identities=18% Similarity=0.169 Sum_probs=81.3
Q ss_pred cccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCC---h---HHHHHHHHHHhcCCCCCCCc-
Q 032598 4 TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDN---L---PVSRSELHDLLSKPSLNGIP- 76 (137)
Q Consensus 4 t~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~p- 76 (137)
|+...+..+..++.++.+|||||+++|...+..+++.+|++++|+|+++... + .+....+..+.. .++|
T Consensus 82 Tid~~~~~~~~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~----~~v~~ 157 (439)
T 3j2k_7 82 TVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----AGVKH 157 (439)
T ss_pred eEEEeEEEEecCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH----cCCCe
Confidence 4445556677888999999999999999999999999999999999998532 1 122222222221 3566
Q ss_pred EEEEeeCCCCCCCCC----HH----HHHHHhCCCCCC-CCceeEEEeecccCCChHHHHH
Q 032598 77 LLVLGNKIDKPEALS----KE----DLMEQMGLKSIT-DREVCCYMISCKNSTNIDTVID 127 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~----~~----~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~~~~ 127 (137)
+++++||+|+..... .. ++...+....+. ...++++++||++|+|++++.+
T Consensus 158 iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 158 LIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred EEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 899999999964211 11 222222211111 1256799999999999998654
No 149
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.68 E-value=3.3e-16 Score=111.80 Aligned_cols=117 Identities=20% Similarity=0.219 Sum_probs=82.0
Q ss_pred ceeeEEEeCCEEEEEEecCCccc---------cHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPR---------FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~---------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
..+..+..++..+++|||||.+. ++..+..+++.||++++|+|+++..+..+ .++..++.. .++|+
T Consensus 39 ~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d--~~i~~~l~~---~~~p~ 113 (439)
T 1mky_A 39 PVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKED--ESLADFLRK---STVDT 113 (439)
T ss_dssp CSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHH--HHHHHHHHH---HTCCE
T ss_pred eeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCE
Confidence 44556777889999999999764 34567778999999999999988655433 233333322 46899
Q ss_pred EEEeeCCCCCCCCCHHHH-HHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 78 LVLGNKIDKPEALSKEDL-MEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 78 ivv~nK~D~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
++++||+|+.... .... .+..... . -.++++||++|.|++++++++.+.+.
T Consensus 114 ilv~NK~D~~~~~-~~~~~~~~~~lg-~----~~~~~iSA~~g~gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 114 ILVANKAENLREF-EREVKPELYSLG-F----GEPIPVSAEHNINLDTMLETIIKKLE 165 (439)
T ss_dssp EEEEESCCSHHHH-HHHTHHHHGGGS-S----CSCEECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCcccc-HHHHHHHHHhcC-C----CCEEEEeccCCCCHHHHHHHHHHhcc
Confidence 9999999985320 1111 1211111 1 14799999999999999999988764
No 150
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.68 E-value=3.1e-17 Score=117.01 Aligned_cols=119 Identities=16% Similarity=0.139 Sum_probs=77.8
Q ss_pred cccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHH-------HHHHHHHHhcCCCCCCCc
Q 032598 4 TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPV-------SRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 4 t~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~-------~~~~~~~~~~~~~~~~~p 76 (137)
|+...+..++..+..+.+|||||+++|...+..+++.+|++++|+|+++ .+++. ........... .-.|
T Consensus 71 Ti~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~---~~~~ 146 (435)
T 1jny_A 71 TINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM---GLDQ 146 (435)
T ss_dssp ------CEEECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT---TCTT
T ss_pred eeEeeEEEEecCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc---CCCe
Confidence 5555666778888999999999999999999999999999999999998 44442 22222222111 2246
Q ss_pred EEEEeeCCCCCCCC-C-------HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHH
Q 032598 77 LLVLGNKIDKPEAL-S-------KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 126 (137)
Q Consensus 77 ~ivv~nK~D~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 126 (137)
+++++||+|+.+.. . ..++...+....+....+.++++||++|+|+.+++
T Consensus 147 iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~ 204 (435)
T 1jny_A 147 LIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS 204 (435)
T ss_dssp CEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred EEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence 89999999997631 1 12222222211112224679999999999997543
No 151
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.67 E-value=1.9e-15 Score=101.72 Aligned_cols=115 Identities=11% Similarity=0.124 Sum_probs=85.9
Q ss_pred ceeeEEEeCCEEEEEEecCCccccHH------hHHHHh--ccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFRS------MWERYC--RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~~------~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.....+..++..+.+|||||+..+.. ....++ ..+|++++|+|+++. +....+...+... ..+|++
T Consensus 40 ~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~---~~~~~~~~~~~~~---~~~p~i 113 (271)
T 3k53_A 40 KKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL---MRNLFLTLELFEM---EVKNII 113 (271)
T ss_dssp EEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH---HHHHHHHHHHHHT---TCCSEE
T ss_pred eeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc---hhhHHHHHHHHhc---CCCCEE
Confidence 33445677888999999999987765 566666 689999999999874 3333444444432 239999
Q ss_pred EEeeCCCCCCC----CCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 79 VLGNKIDKPEA----LSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 79 vv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++||+|+.+. .....+...++. +++++||++|.|++++++++.+.+.+
T Consensus 114 lv~NK~Dl~~~~~~~~~~~~l~~~lg~--------~~~~~Sa~~g~gi~~l~~~i~~~~~~ 166 (271)
T 3k53_A 114 LVLNKFDLLKKKGAKIDIKKMRKELGV--------PVIPTNAKKGEGVEELKRMIALMAEG 166 (271)
T ss_dssp EEEECHHHHHHHTCCCCHHHHHHHHSS--------CEEECBGGGTBTHHHHHHHHHHHHHT
T ss_pred EEEEChhcCcccccHHHHHHHHHHcCC--------cEEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 99999996432 234566666664 49999999999999999999987753
No 152
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.67 E-value=1.4e-16 Score=113.64 Aligned_cols=111 Identities=22% Similarity=0.285 Sum_probs=75.5
Q ss_pred EEEeCCEEEEEEecCCcc--------ccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEee
Q 032598 11 KVTKGNVTIKLWDLGGQP--------RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGN 82 (137)
Q Consensus 11 ~~~~~~~~~~~~Dt~g~~--------~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 82 (137)
.+..++..+.+|||||++ .+...+..+++.+|++++|+|+.+..+..+ .++...+.. .++|+++++|
T Consensus 45 ~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d--~~~~~~l~~---~~~pvilv~N 119 (436)
T 2hjg_A 45 SAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD--EEVAKILYR---TKKPVVLAVN 119 (436)
T ss_dssp ECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHHTT---CCSCEEEEEE
T ss_pred EEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH--HHHHHHHHH---cCCCEEEEEE
Confidence 344557789999999985 567778888999999999999998766543 444454443 5789999999
Q ss_pred CCCCCCCCC-HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 83 KIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 83 K~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
|+|+..... ..++. .++. -.++++||++|.|++++++++.+.+.
T Consensus 120 K~D~~~~~~~~~~~~-~lg~-------~~~~~iSA~~g~gv~~L~~~i~~~l~ 164 (436)
T 2hjg_A 120 KLDNTEMRANIYDFY-SLGF-------GEPYPISGTHGLGLGDLLDAVAEHFK 164 (436)
T ss_dssp CCCC-----CCCSSG-GGSS-------CCCEECBTTTTBTHHHHHHHHHHTGG
T ss_pred CccCccchhhHHHHH-HcCC-------CCeEEEeCcCCCChHHHHHHHHHhcC
Confidence 999864321 01111 1111 14899999999999999999998775
No 153
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.66 E-value=3.2e-16 Score=111.03 Aligned_cols=113 Identities=15% Similarity=0.141 Sum_probs=80.7
Q ss_pred EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC----H
Q 032598 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS----K 92 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----~ 92 (137)
..+.+|||||+++|...+...+..+|++++|+|+++..+..+....+..+... ...|+++++||+|+.+... .
T Consensus 83 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~ 159 (410)
T 1kk1_A 83 RRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENY 159 (410)
T ss_dssp EEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHH
T ss_pred cEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc---CCCcEEEEEECccCCCHHHHHHHH
Confidence 78999999999999888888889999999999999754223333333322211 2357999999999976432 1
Q ss_pred HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 93 EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
.++.+.+... ....++++++||++|+|+++++++|.+.+.
T Consensus 160 ~~i~~~l~~~--~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 160 RQIKEFIEGT--VAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHHHHHTTS--TTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHHhc--CcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 2333333321 123567999999999999999999988653
No 154
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.66 E-value=4.9e-16 Score=109.94 Aligned_cols=122 Identities=16% Similarity=0.103 Sum_probs=85.6
Q ss_pred ceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCC
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKID 85 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D 85 (137)
.....+..++..+.+|||||+++|...+..+++.+|++++|+|+++.... +...++..+.. .++| +++++||+|
T Consensus 65 ~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~----~~ip~iivviNK~D 139 (405)
T 2c78_A 65 TAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ----VGVPYIVVFMNKVD 139 (405)
T ss_dssp CEEEEEECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHH----TTCCCEEEEEECGG
T ss_pred eeeeEeccCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCEEEEEEECcc
Confidence 33445666789999999999999999999999999999999999986543 34445444432 3677 889999999
Q ss_pred CCCCCC-HH----HHHHHhCCCCCCCCceeEEEeecccCCC------------------hHHHHHHHHHhh
Q 032598 86 KPEALS-KE----DLMEQMGLKSITDREVCCYMISCKNSTN------------------IDTVIDWLVKHS 133 (137)
Q Consensus 86 ~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~------------------v~~~~~~i~~~~ 133 (137)
+.+... .. ++...+.........++++++||++|.| +.++++.+.+.+
T Consensus 140 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 210 (405)
T 2c78_A 140 MVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYI 210 (405)
T ss_dssp GCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHS
T ss_pred ccCcHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhc
Confidence 975211 11 2222222111112246799999999987 778888877654
No 155
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.66 E-value=2.7e-16 Score=110.99 Aligned_cols=125 Identities=14% Similarity=0.055 Sum_probs=85.8
Q ss_pred cccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEee
Q 032598 4 TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGN 82 (137)
Q Consensus 4 t~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~n 82 (137)
|++..+..+..++..+.+|||||+++|...+..+++.+|++++|+|+++....+. ...+..+.. .++| +++++|
T Consensus 53 Ti~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt-~e~l~~~~~----~~vp~iivviN 127 (397)
T 1d2e_A 53 TINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQT-REHLLLARQ----IGVEHVVVYVN 127 (397)
T ss_dssp EEECEEEEEECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHH----TTCCCEEEEEE
T ss_pred EEEeeeEEeccCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCeEEEEEE
Confidence 3334444566677899999999999999989999999999999999998654332 333333322 3678 689999
Q ss_pred CCCCCCCCCH-----HHHHHHhCCCCCCCCceeEEEeecccCCC----------hHHHHHHHHHhh
Q 032598 83 KIDKPEALSK-----EDLMEQMGLKSITDREVCCYMISCKNSTN----------IDTVIDWLVKHS 133 (137)
Q Consensus 83 K~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~----------v~~~~~~i~~~~ 133 (137)
|+|+.+.... .++.+.+.........++++++||++|.| ++++++.+.+.+
T Consensus 128 K~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 128 KADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp CGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred CcccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 9999752111 12222222111222346799999999775 889999988755
No 156
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.65 E-value=7.4e-16 Score=111.18 Aligned_cols=118 Identities=14% Similarity=0.045 Sum_probs=78.2
Q ss_pred cccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCCh------HHHHHHHHHHhcCCCCCCCcE
Q 032598 4 TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNL------PVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 4 t~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~------~~~~~~~~~~~~~~~~~~~p~ 77 (137)
|+......+..++..+.+|||||++++...+..+++.+|++++|+|+++.... .+........... ...|+
T Consensus 98 Ti~~~~~~~~~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~---~~~~i 174 (483)
T 3p26_A 98 TVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL---GIHNL 174 (483)
T ss_dssp SCCCCEEEEECSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT---TCCCE
T ss_pred ceEeeeEEEecCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc---CCCcE
Confidence 34445566778889999999999999999999999999999999999985432 1222222222111 22569
Q ss_pred EEEeeCCCCCCCCC--HH----HHHHHhCCCCCCCCceeEEEeecccCCChHH
Q 032598 78 LVLGNKIDKPEALS--KE----DLMEQMGLKSITDREVCCYMISCKNSTNIDT 124 (137)
Q Consensus 78 ivv~nK~D~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 124 (137)
++++||+|+.+... .. ++...+.........+.++++||++|+|+++
T Consensus 175 IvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 175 IIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp EEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred EEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 99999999976321 11 1222221111122357899999999999975
No 157
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.65 E-value=3.4e-17 Score=118.91 Aligned_cols=115 Identities=18% Similarity=0.202 Sum_probs=83.9
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--H
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--K 92 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~ 92 (137)
++..+++|||||++.|..++..+++.+|++++|+|+++....+.... +..+.. .++|+++++||+|+.+... .
T Consensus 50 ~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~-l~~~~~----~~vPiIVViNKiDl~~~~~~~v 124 (537)
T 3izy_P 50 SGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVES-IQHAKD----AHVPIVLAINKCDKAEADPEKV 124 (537)
T ss_dssp CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHH-HHHHHT----TTCCEEECCBSGGGTTTSCCSS
T ss_pred CCCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHHH-HHHHHH----cCCcEEEEEecccccccchHHH
Confidence 45689999999999999999999999999999999998765544332 232322 5689999999999975422 1
Q ss_pred HHHHHHhCCCCCC-CCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 93 EDLMEQMGLKSIT-DREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 93 ~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
......+...... ...++++++||++|+|++++++++...+.
T Consensus 125 ~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 125 KKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALAE 167 (537)
T ss_dssp SSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred HHHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhhh
Confidence 2222222221111 23567999999999999999999987753
No 158
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.65 E-value=5.7e-18 Score=110.25 Aligned_cols=78 Identities=27% Similarity=0.398 Sum_probs=65.9
Q ss_pred CCEEEEEEecCCccccHHhHHHHhcc----CCEEEEEEeCC-CCCChHHHHHHHHHHhcCC---CCCCCcEEEEeeCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRA----VSAIVYVVDAA-DYDNLPVSRSELHDLLSKP---SLNGIPLLVLGNKIDK 86 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~----~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~D~ 86 (137)
....+.+|||||++.++..+..+++. ++++++|+|++ +.+++.....|+..+.... ...++|+++++||+|+
T Consensus 53 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 132 (218)
T 1nrj_B 53 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL 132 (218)
T ss_dssp GGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred eCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHh
Confidence 45689999999999999999999887 89999999999 8889998888888776532 1257999999999999
Q ss_pred CCCCCH
Q 032598 87 PEALSK 92 (137)
Q Consensus 87 ~~~~~~ 92 (137)
......
T Consensus 133 ~~~~~~ 138 (218)
T 1nrj_B 133 FTARPP 138 (218)
T ss_dssp TTCCCH
T ss_pred cccCCH
Confidence 876653
No 159
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.65 E-value=9.6e-16 Score=109.88 Aligned_cols=113 Identities=14% Similarity=0.166 Sum_probs=73.7
Q ss_pred eeEEEeCCEEEEEEecCCccccHHhHHH--------HhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 9 MRKVTKGNVTIKLWDLGGQPRFRSMWER--------YCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 9 ~~~~~~~~~~~~~~Dt~g~~~~~~~~~~--------~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
...+..++..+.+|||||...+...+.. +++.+|++++|+|++++.+... ..++..+ ...|+++|
T Consensus 264 ~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l------~~~piivV 336 (462)
T 3geh_A 264 ESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD-QEIYEQV------KHRPLILV 336 (462)
T ss_dssp HHEEEETTEEEEECC--------------------CCCCSCSEEEEEEETTTCSCHHH-HHHHHHH------TTSCEEEE
T ss_pred EEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhc------cCCcEEEE
Confidence 3456778899999999998766544433 4678999999999998766554 3344444 23699999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+||+|+....... .... . ....+++++||++|+|+++++++|.+.+..
T Consensus 337 ~NK~Dl~~~~~~~----~~~~--~-~~~~~~i~iSAktg~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 337 MNKIDLVEKQLIT----SLEY--P-ENITQIVHTAAAQKQGIDSLETAILEIVQT 384 (462)
T ss_dssp EECTTSSCGGGST----TCCC--C-TTCCCEEEEBTTTTBSHHHHHHHHHHHHTT
T ss_pred EECCCCCcchhhH----HHHH--h-ccCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 9999997543322 1110 0 124569999999999999999999988753
No 160
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.62 E-value=2.9e-17 Score=118.03 Aligned_cols=120 Identities=18% Similarity=0.176 Sum_probs=66.8
Q ss_pred CcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCC---ChH---HHHHHHHHHhcCCCCCCCc
Q 032598 3 PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD---NLP---VSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 3 pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~p 76 (137)
+|++..+..+..++..+.+|||||+++|...+..+++.+|++++|+|+++.. +|+ +....+.... ..++|
T Consensus 107 iTi~~~~~~~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~----~~~vp 182 (467)
T 1r5b_A 107 KTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLAR----TQGIN 182 (467)
T ss_dssp ------CCEEECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHH----HTTCS
T ss_pred ceEEeeeEEEecCCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHH----HcCCC
Confidence 3555566667778899999999999999999999999999999999999852 221 1112222221 14576
Q ss_pred -EEEEeeCCCCCCCC-CH-------HHHHHHhCCC-CCC-CCceeEEEeecccCCChHHHH
Q 032598 77 -LLVLGNKIDKPEAL-SK-------EDLMEQMGLK-SIT-DREVCCYMISCKNSTNIDTVI 126 (137)
Q Consensus 77 -~ivv~nK~D~~~~~-~~-------~~~~~~~~~~-~~~-~~~~~~~~~Sa~~~~~v~~~~ 126 (137)
+++++||+|+.... .. .++...+... .+. ...++++++||++|+|+.+++
T Consensus 183 ~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 183 HLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp SEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred EEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 89999999996422 11 1222222110 111 125679999999999998755
No 161
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.60 E-value=1.5e-16 Score=114.70 Aligned_cols=116 Identities=28% Similarity=0.328 Sum_probs=80.1
Q ss_pred EEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC
Q 032598 11 KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL 90 (137)
Q Consensus 11 ~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 90 (137)
.+..++..+++|||||++.|..++..+++.+|++++|+|+++....+.. ..+.... ..++|+++++||+|+.+..
T Consensus 45 ~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~-e~l~~~~----~~~vPiIVviNKiDl~~~~ 119 (501)
T 1zo1_I 45 HVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTI-EAIQHAK----AAQVPVVVAVNKIDKPEAD 119 (501)
T ss_dssp CCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTH-HHHHHHH----HTTCCEEEEEECSSSSTTC
T ss_pred EEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHH-HHHHHHH----hcCceEEEEEEeccccccC
Confidence 3445567899999999999999888889999999999999884322221 1222221 1468999999999997532
Q ss_pred CHHHHHHHhCCCCC----CCCceeEEEeecccCCChHHHHHHHHHh
Q 032598 91 SKEDLMEQMGLKSI----TDREVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 91 ~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
. ..+...+..... ....++++++||++|+|++++++++...
T Consensus 120 ~-~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 120 P-DRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQ 164 (501)
T ss_dssp C-CCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTTT
T ss_pred H-HHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhhh
Confidence 1 111122211100 0123689999999999999999998754
No 162
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.60 E-value=4.4e-15 Score=109.27 Aligned_cols=111 Identities=17% Similarity=0.204 Sum_probs=78.0
Q ss_pred EEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH-----
Q 032598 18 TIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK----- 92 (137)
Q Consensus 18 ~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----- 92 (137)
.+++|||||+++|..++..+++.+|++++|+|+++.-..+....+ ..+. ..++|+++++||+|+......
T Consensus 71 ~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l-~~l~----~~~vPiIVViNKiDl~~~~~~~~~~~ 145 (594)
T 1g7s_A 71 GLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEAL-NILR----MYRTPFVVAANKIDRIHGWRVHEGRP 145 (594)
T ss_dssp EEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHH-HHHH----HTTCCEEEEEECGGGSTTCCCCTTCC
T ss_pred CEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHH-HHHH----HcCCeEEEEecccccccccccccCCc
Confidence 699999999999999888888999999999999985333222222 2222 157899999999999642110
Q ss_pred ---------H-----------HHHHHhCCCCC----------CCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 93 ---------E-----------DLMEQMGLKSI----------TDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 93 ---------~-----------~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
. ++...+..... ....++++++||++|+|++++++++...+
T Consensus 146 ~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~ 216 (594)
T 1g7s_A 146 FMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLA 216 (594)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhc
Confidence 0 11122211000 12356899999999999999999998765
No 163
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.60 E-value=2.6e-14 Score=104.07 Aligned_cols=80 Identities=23% Similarity=0.227 Sum_probs=61.7
Q ss_pred ceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 86 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 86 (137)
.....+..++..+++|||||+.++...+..+++.+|++++|+|+++..... ....+..+ ...++|+++++||+|+
T Consensus 72 ~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~----~~~~ipiivviNK~Dl 146 (529)
T 2h5e_A 72 TSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVT----RLRDTPILTFMNKLDR 146 (529)
T ss_dssp TTEEEEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHH----TTTTCCEEEEEECTTS
T ss_pred eeEEEEEECCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHH----HHcCCCEEEEEcCcCC
Confidence 344567788999999999999999988899999999999999999864322 22232222 2257899999999999
Q ss_pred CCCCC
Q 032598 87 PEALS 91 (137)
Q Consensus 87 ~~~~~ 91 (137)
.....
T Consensus 147 ~~~~~ 151 (529)
T 2h5e_A 147 DIRDP 151 (529)
T ss_dssp CCSCH
T ss_pred ccccH
Confidence 76543
No 164
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.60 E-value=2.3e-15 Score=107.91 Aligned_cols=111 Identities=21% Similarity=0.275 Sum_probs=77.2
Q ss_pred EEeCCEEEEEEecCC--------ccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeC
Q 032598 12 VTKGNVTIKLWDLGG--------QPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNK 83 (137)
Q Consensus 12 ~~~~~~~~~~~Dt~g--------~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 83 (137)
+...+..+.+||||| ++.++.....+++.+|++++|+|..+..+ ....++...+.. .++|+++++||
T Consensus 66 ~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~--~~d~~l~~~l~~---~~~pvilV~NK 140 (456)
T 4dcu_A 66 AEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVT--AADEEVAKILYR---TKKPVVLAVNK 140 (456)
T ss_dssp CTTCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSC--HHHHHHHHHHTT---CCSCEEEEEEC
T ss_pred EEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCC--hHHHHHHHHHHH---cCCCEEEEEEC
Confidence 444577899999999 77788888899999999999999876433 334555555543 67999999999
Q ss_pred CCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 84 IDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 84 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+|+.+... ...+.+... .-..+++||++|.|+.++++++.+.+.
T Consensus 141 ~D~~~~~~--~~~e~~~lg-----~~~~~~iSA~~g~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 141 LDNTEMRA--NIYDFYSLG-----FGEPYPISGTHGLGLGDLLDAVAEHFK 184 (456)
T ss_dssp C-----------CCSGGGS-----SSSEEECCTTTCTTHHHHHHHHHTTGG
T ss_pred ccchhhhh--hHHHHHHcC-----CCceEEeecccccchHHHHHHHHhhcc
Confidence 99864321 111111110 113679999999999999999988764
No 165
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.58 E-value=1.5e-15 Score=108.97 Aligned_cols=119 Identities=14% Similarity=0.113 Sum_probs=79.5
Q ss_pred CcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCC---ChH---HHHHHHHHHhcCCCCCCCc
Q 032598 3 PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD---NLP---VSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 3 pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~p 76 (137)
.|+...+..++.++..+.+|||||+++|...+..+++.+|++++|+|+++.. +++ +....+..... .++|
T Consensus 71 iTi~~~~~~~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~----~~v~ 146 (458)
T 1f60_A 71 ITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVR 146 (458)
T ss_dssp CCCSCSCEEEECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCC
T ss_pred cEEEEEEEEEecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH----cCCC
Confidence 3566666778888999999999999999999999999999999999998642 111 22222222221 3455
Q ss_pred -EEEEeeCCCCCCCCC--HH----HHHHHhCCCCCCCCceeEEEeecccCCChHHH
Q 032598 77 -LLVLGNKIDKPEALS--KE----DLMEQMGLKSITDREVCCYMISCKNSTNIDTV 125 (137)
Q Consensus 77 -~ivv~nK~D~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 125 (137)
+++++||+|+.+... .. ++...+....+....++++++||++|+|+.++
T Consensus 147 ~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 147 QLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp EEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred eEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 899999999974211 11 12221111111112457999999999998643
No 166
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.58 E-value=9.2e-15 Score=104.39 Aligned_cols=122 Identities=18% Similarity=0.071 Sum_probs=79.0
Q ss_pred eeEEEeCCEEEEEEecCCccccHHhH------------HHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 9 MRKVTKGNVTIKLWDLGGQPRFRSMW------------ERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 9 ~~~~~~~~~~~~~~Dt~g~~~~~~~~------------~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
...+..++..+.+|||+|..+..... ..+++.+|++++|+|+++..+.++. ++...... .++|
T Consensus 220 ~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~---~~~~ 294 (439)
T 1mky_A 220 DDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ--RMAGLMER---RGRA 294 (439)
T ss_dssp CEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH---TTCE
T ss_pred EEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH---cCCC
Confidence 34566778899999999985443321 3467889999999999987665542 22222221 5789
Q ss_pred EEEEeeCCCCCCCCC--HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++++||+|+.+... ..+....+..........+++++||++|.|++++|+.+.+.+.+
T Consensus 295 ~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 295 SVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp EEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 999999999975432 22222222110001123468999999999999999999887653
No 167
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.58 E-value=1.2e-14 Score=112.63 Aligned_cols=119 Identities=14% Similarity=0.071 Sum_probs=84.1
Q ss_pred eEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCCC
Q 032598 10 RKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDKPE 88 (137)
Q Consensus 10 ~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~ 88 (137)
..++.++..+++|||||+++|...+..+++.+|++++|+|+++.... +...++..+.. .++| +++++||+|+.+
T Consensus 352 v~f~~~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~----lgIP~IIVVINKiDLv~ 426 (1289)
T 3avx_A 352 VEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQ----VGVPYIIVFLNKCDMVD 426 (1289)
T ss_dssp EEEECSSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHH----HTCSCEEEEEECCTTCC
T ss_pred EEEcCCCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHH----cCCCeEEEEEeeccccc
Confidence 34666789999999999999999999999999999999999986433 23344433322 3577 789999999975
Q ss_pred CCCH-----HHHHHHhCCCCCCCCceeEEEeecccC--------CChHHHHHHHHHhh
Q 032598 89 ALSK-----EDLMEQMGLKSITDREVCCYMISCKNS--------TNIDTVIDWLVKHS 133 (137)
Q Consensus 89 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~--------~~v~~~~~~i~~~~ 133 (137)
.... .++.+.+.........++++++||++| .|+.++++.|.+.+
T Consensus 427 d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 427 DEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred chhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 3211 122222221112223567999999999 46889999888754
No 168
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.57 E-value=9.4e-16 Score=113.22 Aligned_cols=119 Identities=13% Similarity=0.090 Sum_probs=79.0
Q ss_pred cccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCC---Ch---HHHHHHHHHHhcCCCCCCCcE
Q 032598 4 TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD---NL---PVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 4 t~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~p~ 77 (137)
|+......+..++.++.+|||||++++...+..+++.+|++++|+|+++.. ++ .+....+..+ .. ....|+
T Consensus 232 Tid~~~~~~~~~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~-~~--lgi~~i 308 (611)
T 3izq_1 232 TVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLA-SS--LGIHNL 308 (611)
T ss_dssp CCSCSCCEEECSSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHH-HT--TTCCEE
T ss_pred eEeeeeEEEecCCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHH-HH--cCCCeE
Confidence 444556678888899999999999999999999999999999999998731 11 1122222222 22 122459
Q ss_pred EEEeeCCCCCCCCC--H----HHHHHHhCCCCCCCCceeEEEeecccCCChHHH
Q 032598 78 LVLGNKIDKPEALS--K----EDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 125 (137)
Q Consensus 78 ivv~nK~D~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 125 (137)
++++||+|+.+... . .++...+.........++++++||++|+|+.++
T Consensus 309 IVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 309 IIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp EEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred EEEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 99999999976321 1 112222211111123567999999999999865
No 169
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.56 E-value=1.8e-13 Score=102.45 Aligned_cols=83 Identities=19% Similarity=0.163 Sum_probs=65.7
Q ss_pred CcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEee
Q 032598 3 PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGN 82 (137)
Q Consensus 3 pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 82 (137)
+|++.+...+..++..+++|||||+.++...+..+++.+|++++|+|+++..+.+....|.. +.. .++|+++++|
T Consensus 63 iTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~----~~~p~ivviN 137 (691)
T 1dar_A 63 ITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK----YKVPRIAFAN 137 (691)
T ss_dssp ----CCEEEEEETTEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH----TTCCEEEEEE
T ss_pred cccccceEEEEECCeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH----cCCCEEEEEE
Confidence 45666666778889999999999999999999999999999999999999877666554443 322 4789999999
Q ss_pred CCCCCCCC
Q 032598 83 KIDKPEAL 90 (137)
Q Consensus 83 K~D~~~~~ 90 (137)
|+|+....
T Consensus 138 KiD~~~~~ 145 (691)
T 1dar_A 138 KMDKTGAD 145 (691)
T ss_dssp CTTSTTCC
T ss_pred CCCcccCC
Confidence 99997653
No 170
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.56 E-value=2.8e-14 Score=99.64 Aligned_cols=126 Identities=22% Similarity=0.221 Sum_probs=84.0
Q ss_pred CcccceeeEEEeCCEEEEEEecCCc---------cccHHhHHHHhccCCEEEEEEeCCCCC--ChHHHHHHHHHHhcCCC
Q 032598 3 PTVGFNMRKVTKGNVTIKLWDLGGQ---------PRFRSMWERYCRAVSAIVYVVDAADYD--NLPVSRSELHDLLSKPS 71 (137)
Q Consensus 3 pt~~~~~~~~~~~~~~~~~~Dt~g~---------~~~~~~~~~~~~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~ 71 (137)
+|.+.....+...+..+.+|||+|. +.++..+. .++.+|.+++|+|++++. .......+.. ++....
T Consensus 212 ~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~~aD~il~VvD~s~~~~~~~~~~~~~~~-~L~~l~ 289 (364)
T 2qtf_A 212 TTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAKYSDALILVIDSTFSENLLIETLQSSFE-ILREIG 289 (364)
T ss_dssp --CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHH-GGGGSSEEEEEEETTSCHHHHHHHHHHHHH-HHHHHT
T ss_pred cccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHH-HHHhCCEEEEEEECCCCcchHHHHHHHHHH-HHHHhC
Confidence 4556666778777889999999996 22344333 578899999999998864 3333322322 222222
Q ss_pred CCCCcEEEEeeCCCCCCCCCHH--HH----HHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 72 LNGIPLLVLGNKIDKPEALSKE--DL----MEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 72 ~~~~p~ivv~nK~D~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
..++|+++|+||+|+.+..... .. ...+. .....++++||++|+|+++++++|.+.+..
T Consensus 290 ~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~-----~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 290 VSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELY-----SPIFDVIPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp CCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHC-----SCEEEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhc-----CCCCcEEEEECCCCcCHHHHHHHHHHHhcc
Confidence 3578999999999997543111 11 12331 113458999999999999999999987753
No 171
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.55 E-value=3.6e-14 Score=96.36 Aligned_cols=112 Identities=15% Similarity=0.125 Sum_probs=75.4
Q ss_pred CEEEEEEecCCcc-------------ccHHhHHHHhccCCEEE-EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 16 NVTIKLWDLGGQP-------------RFRSMWERYCRAVSAIV-YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 16 ~~~~~~~Dt~g~~-------------~~~~~~~~~~~~~~~~i-~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
...+.+|||||.. .+......+++.++.++ +|+|+++..+......+...+. ..+.|+++|+
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~----~~~~~~i~V~ 199 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD----PQGQRTIGVI 199 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHC----TTCSSEEEEE
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhC----CCCCeEEEEE
Confidence 4789999999963 45677788899998777 7999987544333333444442 2468999999
Q ss_pred eCCCCCCCCC-HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHh
Q 032598 82 NKIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 82 nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
||+|+.+... ..+..... ..........++++||++|+|++++++++.+.
T Consensus 200 NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 200 TKLDLMDEGTDARDVLENK-LLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp ECGGGSCTTCCCHHHHTTC-SSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred EccccCCCCchHHHHHhCC-cCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 9999976433 22222110 01111123468899999999999999998753
No 172
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.53 E-value=2.9e-14 Score=97.28 Aligned_cols=115 Identities=17% Similarity=0.180 Sum_probs=76.8
Q ss_pred EEEeCCEEEEEEecCCcc-ccHHh--------HHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 11 KVTKGNVTIKLWDLGGQP-RFRSM--------WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 11 ~~~~~~~~~~~~Dt~g~~-~~~~~--------~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
.+..++.++.+|||||.. ..... ...+++.+|++++|+|+++ +.....++...+.. .+.|+++++
T Consensus 50 i~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~---~~~P~ilvl 123 (301)
T 1ega_A 50 IHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR---WTPDDEMVLNKLRE---GKAPVILAV 123 (301)
T ss_dssp EEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC---CCHHHHHHHHHHHS---SSSCEEEEE
T ss_pred EEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC---CCHHHHHHHHHHHh---cCCCEEEEE
Confidence 456778999999999997 33221 2233677999999999977 33333444443332 578999999
Q ss_pred eCCCCCCC-CCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 82 NKIDKPEA-LSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 82 nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
||+|+... ....+....+... . ....++++||++|.|++++++.+.+.+.
T Consensus 124 NK~D~~~~~~~~~~~l~~l~~~-~--~~~~~i~iSA~~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 124 NKVDNVQEKADLLPHLQFLASQ-M--NFLDIVPISAETGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp ESTTTCCCHHHHHHHHHHHHTT-S--CCSEEEECCTTTTTTHHHHHHHHHTTCC
T ss_pred ECcccCccHHHHHHHHHHHHHh-c--CcCceEEEECCCCCCHHHHHHHHHHhCC
Confidence 99999752 1122223323211 0 0125899999999999999999987653
No 173
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.52 E-value=4.9e-16 Score=114.38 Aligned_cols=123 Identities=19% Similarity=0.131 Sum_probs=66.6
Q ss_pred cceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCC---Ch---HHHHHHHHHHhcCCCCCCCc-EE
Q 032598 6 GFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD---NL---PVSRSELHDLLSKPSLNGIP-LL 78 (137)
Q Consensus 6 ~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~p-~i 78 (137)
......+..++..+.+|||||+++|...+..+++.+|++|+|+|+++.. ++ .+....+..+.. .++| ++
T Consensus 244 d~~~~~~~~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~----lgip~iI 319 (592)
T 3mca_A 244 DVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA----LGISEIV 319 (592)
T ss_dssp ---------------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH----SSCCCEE
T ss_pred EeeEEEEEeCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH----cCCCeEE
Confidence 3444456666789999999999999888888899999999999998642 11 111222222221 3455 89
Q ss_pred EEeeCCCCCCCCC--H----HHHHHHh-CCCCCCCCceeEEEeecccCCChH--------------HHHHHHHHh
Q 032598 79 VLGNKIDKPEALS--K----EDLMEQM-GLKSITDREVCCYMISCKNSTNID--------------TVIDWLVKH 132 (137)
Q Consensus 79 vv~nK~D~~~~~~--~----~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~v~--------------~~~~~i~~~ 132 (137)
+++||+|+.+... . .++...+ ....+....++++++||++|+|+. .|++.|...
T Consensus 320 vviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~ 394 (592)
T 3mca_A 320 VSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQL 394 (592)
T ss_dssp EEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTS
T ss_pred EEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhh
Confidence 9999999975221 1 2333434 322333346789999999999998 677777654
No 174
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.51 E-value=3.1e-15 Score=95.49 Aligned_cols=85 Identities=25% Similarity=0.395 Sum_probs=67.5
Q ss_pred CCEEEEEEecCCccccHHhHHHHhcc----CCEEEEEEeCC-CCCChHHHHHHHHHHhcCC---CCCCCcEEEEeeCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRA----VSAIVYVVDAA-DYDNLPVSRSELHDLLSKP---SLNGIPLLVLGNKIDK 86 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~----~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~D~ 86 (137)
.+..+.+|||||++.+...+..+++. +|++++|+|++ +..++.....|+..+.... ...++|+++++||+|+
T Consensus 89 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 168 (193)
T 2ged_A 89 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL 168 (193)
T ss_dssp CCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred cCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHh
Confidence 46789999999999988888888776 89999999999 7777887777777776432 1257999999999999
Q ss_pred CCCCCHHHHHHHh
Q 032598 87 PEALSKEDLMEQM 99 (137)
Q Consensus 87 ~~~~~~~~~~~~~ 99 (137)
.+.....++...+
T Consensus 169 ~~~~~~~~~~~~l 181 (193)
T 2ged_A 169 FTARPPSKIKDAL 181 (193)
T ss_dssp TTCCCHHHHHHHH
T ss_pred cCCCCHHHHHHHH
Confidence 8877765555444
No 175
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.50 E-value=1.3e-12 Score=97.98 Aligned_cols=81 Identities=20% Similarity=0.119 Sum_probs=61.5
Q ss_pred cccceeeEEEeCC-------EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 4 TVGFNMRKVTKGN-------VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 4 t~~~~~~~~~~~~-------~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
|+......+..++ +.+++|||||+.+|...+..+++.+|++++|+|+++....+....| .... ..++|
T Consensus 62 Ti~~~~~~~~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~----~~~ip 136 (704)
T 2rdo_7 62 TITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQAN----KYKVP 136 (704)
T ss_pred eeeeceEEEEECCccccCCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHH----HcCCC
Confidence 3444444555555 8999999999999999999999999999999999987554433333 2222 24689
Q ss_pred EEEEeeCCCCCCC
Q 032598 77 LLVLGNKIDKPEA 89 (137)
Q Consensus 77 ~ivv~nK~D~~~~ 89 (137)
+++++||+|+...
T Consensus 137 ~ilviNKiD~~~~ 149 (704)
T 2rdo_7 137 RIAFVNKMDRMGA 149 (704)
T ss_pred EEEEEeCCCcccc
Confidence 9999999998764
No 176
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.50 E-value=8.8e-13 Score=98.39 Aligned_cols=76 Identities=18% Similarity=0.113 Sum_probs=60.4
Q ss_pred ceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 86 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 86 (137)
.....+..++..+++|||||+.++...+..+++.+|++++|+|+++....... .++..+.. .++|+++++||+|+
T Consensus 64 ~~~~~~~~~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~----~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 64 TGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER----LGLPRMVVVTKLDK 138 (665)
T ss_dssp CEEEEEEETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH----TTCCEEEEEECGGG
T ss_pred ecceEEeeCCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHH----ccCCEEEEecCCch
Confidence 34445677899999999999999999999999999999999998876443332 33333332 46899999999999
Q ss_pred C
Q 032598 87 P 87 (137)
Q Consensus 87 ~ 87 (137)
.
T Consensus 139 ~ 139 (665)
T 2dy1_A 139 G 139 (665)
T ss_dssp C
T ss_pred h
Confidence 7
No 177
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.50 E-value=8.1e-14 Score=93.03 Aligned_cols=124 Identities=12% Similarity=0.089 Sum_probs=77.7
Q ss_pred cceeeEEEeCCEEEEEEecCCccccH-----------HhHHHHhccCCEEEEEEeCCCCCChH-HHHHHHHHHhcCCCCC
Q 032598 6 GFNMRKVTKGNVTIKLWDLGGQPRFR-----------SMWERYCRAVSAIVYVVDAADYDNLP-VSRSELHDLLSKPSLN 73 (137)
Q Consensus 6 ~~~~~~~~~~~~~~~~~Dt~g~~~~~-----------~~~~~~~~~~~~~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~ 73 (137)
......+..++.++.+|||||+..+. .....+++.+|++++|+|++...... ....++...... ..
T Consensus 60 ~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~--~~ 137 (260)
T 2xtp_A 60 TCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGE--DA 137 (260)
T ss_dssp SCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCG--GG
T ss_pred eeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCc--hh
Confidence 34445667788999999999986542 22334678899999999998632222 122333333221 11
Q ss_pred CCcEEEEee-CCCCCCCCCHHH------------HHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 74 GIPLLVLGN-KIDKPEALSKED------------LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 74 ~~p~ivv~n-K~D~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
..|.++++| |+|+... .... +...++.... .+..+++||++|.|++++|++|.+.+.+
T Consensus 138 ~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 138 MGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAACGGRIC---AFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp GGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHTTTCEE---ECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHhCCeEE---EecCcccccccHHHHHHHHHHHHHHHHh
Confidence 356666666 9999753 3332 3333332100 0111789999999999999999988764
No 178
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.48 E-value=1.9e-12 Score=94.69 Aligned_cols=82 Identities=20% Similarity=0.200 Sum_probs=65.3
Q ss_pred cccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeC
Q 032598 4 TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNK 83 (137)
Q Consensus 4 t~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 83 (137)
||.-....+.+++..++++||||+.+|.......++-+|++|+|+|+.+.-..+...-| ..+.. .++|.++++||
T Consensus 87 TI~s~~~~~~~~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~----~~lp~i~fINK 161 (548)
T 3vqt_A 87 SVTTSVMQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRM----RATPVMTFVNK 161 (548)
T ss_dssp -CTTTEEEEEETTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHH----TTCCEEEEEEC
T ss_pred cEeeceEEEEECCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHH----hCCceEEEEec
Confidence 34445556889999999999999999999999999999999999999986554444344 33332 57999999999
Q ss_pred CCCCCCC
Q 032598 84 IDKPEAL 90 (137)
Q Consensus 84 ~D~~~~~ 90 (137)
+|.....
T Consensus 162 ~Dr~~ad 168 (548)
T 3vqt_A 162 MDREALH 168 (548)
T ss_dssp TTSCCCC
T ss_pred ccchhcc
Confidence 9987654
No 179
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.47 E-value=2.3e-12 Score=96.57 Aligned_cols=82 Identities=23% Similarity=0.208 Sum_probs=64.9
Q ss_pred cccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeC
Q 032598 4 TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNK 83 (137)
Q Consensus 4 t~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 83 (137)
|+......+..++..+++|||||+.++...+..+++.+|++++|+|+++..+.+....|. .+.. .++|+++++||
T Consensus 62 Ti~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~----~~~p~ilviNK 136 (693)
T 2xex_A 62 TITSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATT----YGVPRIVFVNK 136 (693)
T ss_dssp --CCSEEEEEETTEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHH----TTCCEEEEEEC
T ss_pred eEeeeeEEEEECCeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHH----cCCCEEEEEEC
Confidence 455555667788999999999999999999999999999999999999876666554443 2322 46899999999
Q ss_pred CCCCCCC
Q 032598 84 IDKPEAL 90 (137)
Q Consensus 84 ~D~~~~~ 90 (137)
+|+....
T Consensus 137 ~Dl~~~~ 143 (693)
T 2xex_A 137 MDKLGAN 143 (693)
T ss_dssp TTSTTCC
T ss_pred CCccccc
Confidence 9997653
No 180
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.45 E-value=1.1e-13 Score=93.27 Aligned_cols=121 Identities=15% Similarity=0.191 Sum_probs=64.9
Q ss_pred CCcccceeeEEE----eCCEEEEEEecCCc-------cccHHhH-------HHHhcc-------------CCEEEEEEeC
Q 032598 2 IPTVGFNMRKVT----KGNVTIKLWDLGGQ-------PRFRSMW-------ERYCRA-------------VSAIVYVVDA 50 (137)
Q Consensus 2 ~pt~~~~~~~~~----~~~~~~~~~Dt~g~-------~~~~~~~-------~~~~~~-------------~~~~i~v~d~ 50 (137)
.||++....... +..+++++|||||. +.+..+. ..+++. +|+++++++.
T Consensus 46 ~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~ 125 (274)
T 3t5d_A 46 KKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAP 125 (274)
T ss_dssp ---CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECS
T ss_pred CCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecC
Confidence 467776665433 23369999999997 3344444 445443 7799999987
Q ss_pred CCCCChHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHH----HHHHhCCCCCCCCceeEEEeecccCCChHHH
Q 032598 51 ADYDNLPVSR-SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKED----LMEQMGLKSITDREVCCYMISCKNSTNIDTV 125 (137)
Q Consensus 51 ~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 125 (137)
+... +.... .++..+.. ++|+++|+||+|+........ +.+.+.. .++.++++||++++|++++
T Consensus 126 ~~~~-~~~~d~~~l~~l~~-----~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~-----~~i~v~~~sa~~~~~~~~l 194 (274)
T 3t5d_A 126 SGHG-LKPLDIEFMKRLHE-----KVNIIPLIAKADTLTPEECQQFKKQIMKEIQE-----HKIKIYEFPETDDEEENKL 194 (274)
T ss_dssp CCSS-CCHHHHHHHHHHTT-----TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHH-----TTCCCCCC-----------
T ss_pred CCCC-CCHHHHHHHHHHhc-----cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHH-----cCCeEEcCCCCCChhHHHH
Confidence 7532 22222 23333321 699999999999865433322 2222221 2345888999999999999
Q ss_pred HHHHHHhh
Q 032598 126 IDWLVKHS 133 (137)
Q Consensus 126 ~~~i~~~~ 133 (137)
+++|.+.+
T Consensus 195 ~~~l~~~~ 202 (274)
T 3t5d_A 195 VKKIKDRL 202 (274)
T ss_dssp CHHHHHTC
T ss_pred HHHHhcCC
Confidence 99998754
No 181
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.43 E-value=6.6e-14 Score=95.55 Aligned_cols=96 Identities=17% Similarity=0.085 Sum_probs=72.1
Q ss_pred ccccHHhHHHHhccCCEEEEEEeCCCCC-ChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC---HHHHHHHhCCC
Q 032598 27 QPRFRSMWERYCRAVSAIVYVVDAADYD-NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS---KEDLMEQMGLK 102 (137)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~~~~~~~ 102 (137)
++++..+.+.+++++|++++|+|++++. ++..+.+|+..+.. .++|+++|+||+|+.+... ..+....+..
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~- 140 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISIYRD- 140 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHH-
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHHHHH-
Confidence 5677777777899999999999999885 88888888876643 5799999999999975431 1222222211
Q ss_pred CCCCCceeEEEeecccCCChHHHHHHHHH
Q 032598 103 SITDREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 103 ~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
.+..++++||++|+|+++++..+..
T Consensus 141 ----~g~~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 141 ----AGYDVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp ----TTCEEEECCTTTCTTHHHHHHHTTT
T ss_pred ----CCCeEEEEECCCCCCHHHHHhhccC
Confidence 1236999999999999999987654
No 182
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.41 E-value=5.1e-14 Score=98.28 Aligned_cols=121 Identities=16% Similarity=0.228 Sum_probs=58.9
Q ss_pred CcccceeeEE--EeCC--EEEEEEecCCc-------cccHHhHH-------HHhccCC-------------EEEEEEeCC
Q 032598 3 PTVGFNMRKV--TKGN--VTIKLWDLGGQ-------PRFRSMWE-------RYCRAVS-------------AIVYVVDAA 51 (137)
Q Consensus 3 pt~~~~~~~~--~~~~--~~~~~~Dt~g~-------~~~~~~~~-------~~~~~~~-------------~~i~v~d~~ 51 (137)
||++.....+ ...+ ..+++|||||. +.+..++. .+++.++ +++++++.+
T Consensus 77 ~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~ 156 (361)
T 2qag_A 77 RTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF 156 (361)
T ss_dssp -CEEEEEEEEC----CEEEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS
T ss_pred CceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC
Confidence 4555444332 2233 58999999999 66666665 6666544 345555432
Q ss_pred CCCChHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHH----HHHHhCCCCCCCCceeEEEeecccCCChHHHH
Q 032598 52 DYDNLPVSRS-ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKED----LMEQMGLKSITDREVCCYMISCKNSTNIDTVI 126 (137)
Q Consensus 52 ~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 126 (137)
..++..... ++..+ ..++|+++|+||+|+........ +..... ..++.++++||++|.| ++.|
T Consensus 157 -~~~l~~~d~~~~~~l-----~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~-----~~~i~~~~~Sa~~~~~-~e~~ 224 (361)
T 2qag_A 157 -GHGLKPLDVAFMKAI-----HNKVNIVPVIAKADTLTLKERERLKKRILDEIE-----EHNIKIYHLPDAESDE-DEDF 224 (361)
T ss_dssp -SSSCCHHHHHHHHHT-----CS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTT-----CC-CCSCCCC----------C
T ss_pred -CCCcchhHHHHHHHh-----ccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHH-----HCCCCEEeCCCcCCCc-chhH
Confidence 345555543 33332 15789999999999976443322 222222 2245789999999999 8888
Q ss_pred HHHHHhhhh
Q 032598 127 DWLVKHSKS 135 (137)
Q Consensus 127 ~~i~~~~~~ 135 (137)
.++.+.+.+
T Consensus 225 ~~l~~~i~~ 233 (361)
T 2qag_A 225 KEQTRLLKA 233 (361)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888777653
No 183
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.39 E-value=3.1e-12 Score=84.99 Aligned_cols=123 Identities=8% Similarity=0.073 Sum_probs=75.8
Q ss_pred cccceeeEEEeCCEEEEEEecCCc--------cccHHhHHHHh----ccCCEEEEEEeCCCCCChH-HHHHHHHHHhcCC
Q 032598 4 TVGFNMRKVTKGNVTIKLWDLGGQ--------PRFRSMWERYC----RAVSAIVYVVDAADYDNLP-VSRSELHDLLSKP 70 (137)
Q Consensus 4 t~~~~~~~~~~~~~~~~~~Dt~g~--------~~~~~~~~~~~----~~~~~~i~v~d~~~~~~~~-~~~~~~~~~~~~~ 70 (137)
|.......+..++..+.+|||||. +.+......++ +.+|++++|+|++.....+ ....++......
T Consensus 57 T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~- 135 (247)
T 3lxw_A 57 TRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGE- 135 (247)
T ss_dssp CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCG-
T ss_pred cccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhCh-
Confidence 334455567788999999999996 33333333333 8999999999998632211 122333333221
Q ss_pred CCCCCcEEEEeeCCCCCCCCCH-----------HHHHHHhCCCCCCCCceeEEEeecc-----cCCChHHHHHHHHHhhh
Q 032598 71 SLNGIPLLVLGNKIDKPEALSK-----------EDLMEQMGLKSITDREVCCYMISCK-----NSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 71 ~~~~~p~ivv~nK~D~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~Sa~-----~~~~v~~~~~~i~~~~~ 134 (137)
...+.|++++.||+|+.+.... ..+...++. .++.+++. .+.|+++|++.+.+.+.
T Consensus 136 ~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~--------~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~ 207 (247)
T 3lxw_A 136 DVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGG--------RVCAFDNRATGREQEAQVEQLLGMVEGLVL 207 (247)
T ss_dssp GGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTT--------CEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCC--------eEEEEeCCCCccccHHHHHHHHHHHHHHHH
Confidence 1236899999999999653211 222222222 24444433 36899999999988876
Q ss_pred h
Q 032598 135 S 135 (137)
Q Consensus 135 ~ 135 (137)
+
T Consensus 208 ~ 208 (247)
T 3lxw_A 208 E 208 (247)
T ss_dssp H
T ss_pred H
Confidence 4
No 184
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.37 E-value=1.8e-12 Score=97.15 Aligned_cols=115 Identities=17% Similarity=0.137 Sum_probs=79.1
Q ss_pred EEEEEEecCCccc---cHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC---
Q 032598 17 VTIKLWDLGGQPR---FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--- 90 (137)
Q Consensus 17 ~~~~~~Dt~g~~~---~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--- 90 (137)
..+.+|||||... .......+++.+|++++|+|+++..+..+...|...+. ..+.|+++|+||+|+....
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~----~~~~~iiiVlNK~Dl~~~~~~~ 249 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK----GRGLTVFFLVNAWDQVRESLID 249 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT----TSCCCEEEEEECGGGGGGGCSS
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH----hhCCCEEEEEECcccccccccC
Confidence 3689999999754 44566778999999999999998877766554443332 1367899999999986432
Q ss_pred --CHH-------HHH----HHhCCC----CCCCCceeEEEeecc--------------cCCChHHHHHHHHHhhhh
Q 032598 91 --SKE-------DLM----EQMGLK----SITDREVCCYMISCK--------------NSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 91 --~~~-------~~~----~~~~~~----~~~~~~~~~~~~Sa~--------------~~~~v~~~~~~i~~~~~~ 135 (137)
... .+. ..+... ........++++||+ +|.|+++++..+.+.+..
T Consensus 250 ~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 250 PDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence 100 111 112110 000123468999999 999999999999887753
No 185
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.36 E-value=6.2e-12 Score=89.10 Aligned_cols=127 Identities=20% Similarity=0.178 Sum_probs=84.2
Q ss_pred cccceeeEEEeCC-EEEEEEecCCcccc----H---HhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCC-CCC
Q 032598 4 TVGFNMRKVTKGN-VTIKLWDLGGQPRF----R---SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPS-LNG 74 (137)
Q Consensus 4 t~~~~~~~~~~~~-~~~~~~Dt~g~~~~----~---~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~ 74 (137)
|+..+...+...+ ..+.+||+||.... . ......++.++.+++++|++ ..++..+..+..++..... ...
T Consensus 191 Tl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~ 269 (416)
T 1udx_A 191 TLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLR 269 (416)
T ss_dssp SSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHH
T ss_pred eecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhc
Confidence 3444455565554 78999999997431 1 11222356799999999998 5556665555554443211 135
Q ss_pred CcEEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 75 IPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 75 ~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
.|.++++||+|+........+...+.. ..+.++.+||++++|+++++++|.+.+.+.
T Consensus 270 ~P~ILVlNKlDl~~~~~~~~l~~~l~~-----~g~~vi~iSA~~g~gi~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 270 RPSLVALNKVDLLEEEAVKALADALAR-----EGLAVLPVSALTGAGLPALKEALHALVRST 326 (416)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHT-----TTSCEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred CCEEEEEECCChhhHHHHHHHHHHHHh-----cCCeEEEEECCCccCHHHHHHHHHHHHHhc
Confidence 889999999999764222333333321 134599999999999999999999988653
No 186
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.36 E-value=1.2e-11 Score=81.64 Aligned_cols=119 Identities=12% Similarity=0.095 Sum_probs=72.8
Q ss_pred ceeeEEEeCCEEEEEEecCCcc-----------ccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCC-CCCC
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQP-----------RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKP-SLNG 74 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~-----------~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~ 74 (137)
.....+...+..+.+|||||.. .+...+..+++.++++++|+|++.....+ ..++..+.... ....
T Consensus 68 ~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~--~~~l~~~~~~~~~~~~ 145 (239)
T 3lxx_A 68 CEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEE--HKATEKILKMFGERAR 145 (239)
T ss_dssp CEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHH--HHHHHHHHHHHHHHHG
T ss_pred EEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHH--HHHHHHHHHHhhhhcc
Confidence 4455677788999999999943 34444455567789999999998654422 23333332210 0123
Q ss_pred CcEEEEeeCCCCCCCCCHH-----------HHHHHhCCCCCCCCceeEEEeecc-----cCCChHHHHHHHHHhhhh
Q 032598 75 IPLLVLGNKIDKPEALSKE-----------DLMEQMGLKSITDREVCCYMISCK-----NSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 75 ~p~ivv~nK~D~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~Sa~-----~~~~v~~~~~~i~~~~~~ 135 (137)
.|+++++||+|+....... ++.+.++. .++.+++. ++.++.+++..+.+.+.+
T Consensus 146 ~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~--------~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 146 SFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGD--------RYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp GGEEEEEECGGGC------------CHHHHHHHHHHSS--------SEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCC--------EEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 6899999999986543322 23333332 25555554 336899999998887754
No 187
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.35 E-value=1.1e-11 Score=84.71 Aligned_cols=116 Identities=17% Similarity=0.143 Sum_probs=71.7
Q ss_pred CCEEEEEEecCCccc-------------cHHhHHHHhccCCEEEEEEeCCCCC-ChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 15 GNVTIKLWDLGGQPR-------------FRSMWERYCRAVSAIVYVVDAADYD-NLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
.+.++.+|||||..+ +......+++.+|++++|+|+++.. ...........+ . ..+.|+++|
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~-~---~~~~~~i~v 204 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV-D---PEGKRTIGV 204 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH-C---SSCSSEEEE
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh-C---CCCCcEEEE
Confidence 457899999999753 4567777899999999999975432 111111222222 2 256899999
Q ss_pred eeCCCCCCCCC-HHHHHHHhCCCCCCCCceeEEEeeccc---CCChHHHHHHHHHhhhh
Q 032598 81 GNKIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCKN---STNIDTVIDWLVKHSKS 135 (137)
Q Consensus 81 ~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~v~~~~~~i~~~~~~ 135 (137)
+||+|+..... ..+..... .........++..+||.+ +.|+.+++..+.+.+..
T Consensus 205 ~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 205 ITKLDLMDKGTDAMEVLTGR-VIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp EECTTSSCSSCCCHHHHTTS-SSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred EcCcccCCcchHHHHHHhCC-CccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 99999975543 12222210 011101122344456666 78999999998877643
No 188
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.31 E-value=4.2e-12 Score=94.41 Aligned_cols=122 Identities=20% Similarity=0.214 Sum_probs=87.3
Q ss_pred ceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 86 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 86 (137)
.....+.+++..++++||||+.+|.......++-+|++|+|+|+.+.-..+...-| ..+.. .++|.++++||+|.
T Consensus 57 s~~~~~~~~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~-~~a~~----~~lp~i~~INKmDr 131 (638)
T 3j25_A 57 TGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILF-HALRK----MGIPTIFFINKIDQ 131 (638)
T ss_dssp CCCCCCBCSSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHH-HHHHH----HTCSCEECCEECCS
T ss_pred eeeEEEEECCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHH-HHHHH----cCCCeEEEEecccc
Confidence 33445677889999999999999999999999999999999999986433332223 33322 46899999999998
Q ss_pred CCCCCH---HHHHHHhCCCCC--------------------------------------------------------CCC
Q 032598 87 PEALSK---EDLMEQMGLKSI--------------------------------------------------------TDR 107 (137)
Q Consensus 87 ~~~~~~---~~~~~~~~~~~~--------------------------------------------------------~~~ 107 (137)
...+.. .++.+.++.... ...
T Consensus 132 ~~a~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (638)
T 3j25_A 132 NGIDLSTVYQDIKEKLSAEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCS 211 (638)
T ss_dssp SSCCSHHHHHHHHHTTCCCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTS
T ss_pred ccCCHHHHHHHHHHHhCCCccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccc
Confidence 765432 334443331100 001
Q ss_pred ceeEEEeecccCCChHHHHHHHHHhh
Q 032598 108 EVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 108 ~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
-.+++..||+++.|++.+++.+.+.+
T Consensus 212 ~~Pv~~gSa~~~~Gv~~LLd~i~~~~ 237 (638)
T 3j25_A 212 LFPLYHGSAKSNIGIDNLIEVITNKF 237 (638)
T ss_dssp CCCCCCCCSTTCCSHHHHHHHHHHSC
T ss_pred cccccccccccCCCchhHhhhhhccc
Confidence 23567789999999999999998754
No 189
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.29 E-value=6.8e-13 Score=88.46 Aligned_cols=119 Identities=16% Similarity=0.000 Sum_probs=71.2
Q ss_pred CEEEEEEecCCccccHHhHH------HHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 032598 16 NVTIKLWDLGGQPRFRSMWE------RYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 89 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 89 (137)
++.+.+|||||+........ ..+.. +.+++++|+....+..................++|+++++||+|+...
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~ 186 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSE 186 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCH
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEeccccccc
Confidence 35799999999976543211 23455 899999998765444433222111111001135899999999998754
Q ss_pred CCHHHHHHHhCC-------------------------CCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 90 LSKEDLMEQMGL-------------------------KSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 90 ~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
....++...+.. .........++++||++|+|+++++++|.+.+..
T Consensus 187 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 187 EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 322111111100 0000012358999999999999999999987753
No 190
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.29 E-value=3e-11 Score=77.84 Aligned_cols=110 Identities=17% Similarity=0.133 Sum_probs=71.0
Q ss_pred EEEEEecCCccc----------cHHhHHHHh---ccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCC
Q 032598 18 TIKLWDLGGQPR----------FRSMWERYC---RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 84 (137)
Q Consensus 18 ~~~~~Dt~g~~~----------~~~~~~~~~---~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 84 (137)
.+.+|||||... ++.....++ +.++++++++|+++..+.... .+..... ..++|+++++||+
T Consensus 73 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~---~~~~~~~~v~nK~ 147 (210)
T 1pui_A 73 GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAV---DSNIAVLVLLTKA 147 (210)
T ss_dssp TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHH---HTTCCEEEEEECG
T ss_pred CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHH--HHHHHHH---HcCCCeEEEEecc
Confidence 678999999742 333444455 468999999999987654321 1111211 1468999999999
Q ss_pred CCCCCCCH----HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 85 DKPEALSK----EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 85 D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
|+...... ..+...+... ...+.++++||+++.|+++++++|.+.+.+
T Consensus 148 D~~s~~~~~~~~~~~~~~~~~~---~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 148 DKLASGARKAQLNMVREAVLAF---NGDVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp GGSCHHHHHHHHHHHHHHHGGG---CSCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred cCCCchhHHHHHHHHHHHHHhc---CCCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 98653211 1222222111 123568999999999999999999887643
No 191
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.26 E-value=8.5e-12 Score=86.89 Aligned_cols=108 Identities=15% Similarity=0.092 Sum_probs=71.5
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHH-
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE- 93 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~- 93 (137)
.+..+.+|||||.... ....++.+|.+++|+|+...+....+. ....++|.++|+||+|+.+.....
T Consensus 170 ~~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~---------~~~~~~p~ivVlNK~Dl~~~~~~~~ 237 (355)
T 3p32_A 170 AGFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIK---------KGVLELADIVVVNKADGEHHKEARL 237 (355)
T ss_dssp TTCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCC---------TTSGGGCSEEEEECCCGGGHHHHHH
T ss_pred CCCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHH---------HhHhhcCCEEEEECCCCcChhHHHH
Confidence 5789999999996432 223458899999999987655432211 112357999999999986432222
Q ss_pred ---HHHHHhCCCC--CCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 94 ---DLMEQMGLKS--ITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 94 ---~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
++...+.... ......+++++||++|+|+++++++|.+.+.
T Consensus 238 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 238 AARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQ 283 (355)
T ss_dssp HHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 2222221100 0011346999999999999999999988764
No 192
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.24 E-value=2.5e-11 Score=84.43 Aligned_cols=111 Identities=14% Similarity=0.124 Sum_probs=69.0
Q ss_pred CEEEEEEecCCcc-------------ccHHhHHHHhccCCEEEEE-EeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 16 NVTIKLWDLGGQP-------------RFRSMWERYCRAVSAIVYV-VDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 16 ~~~~~~~Dt~g~~-------------~~~~~~~~~~~~~~~~i~v-~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
..++.+|||||.. .+..+...|++.++.++++ +|++..........+...+. ..+.|+++|+
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~----~~~~~~i~V~ 204 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVD----PQGQRTIGVI 204 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHC----TTCTTEEEEE
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhC----cCCCceEEEe
Confidence 5789999999963 4556777888777666554 45543222122222333332 2578999999
Q ss_pred eCCCCCCCCC-HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHH
Q 032598 82 NKIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 82 nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
||+|+.+... ........ ..........++++||++|.|++++++++.+
T Consensus 205 NK~Dl~~~~~~~~~~~~~~-~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 205 TKLDLMDEGTDARDVLENK-LLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp ECGGGSCTTCCCHHHHTTC-SSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred ccccccCcchhHHHHHhCC-cccccCCceEEEeCCcccccccccHHHHHHH
Confidence 9999975433 22222211 1111112245788999999999999998876
No 193
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.18 E-value=3.3e-11 Score=84.03 Aligned_cols=107 Identities=16% Similarity=0.180 Sum_probs=70.7
Q ss_pred CCEEEEEEecCCcccc-------------HHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 15 GNVTIKLWDLGGQPRF-------------RSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
....+++|||||..++ ..+...+++.++++++|+|+.+.+.... .++..+. .....+.|+++|+
T Consensus 134 ~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~--~~~~l~~-~~~~~~~~~i~V~ 210 (360)
T 3t34_A 134 NVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATS--DAIKISR-EVDPSGDRTFGVL 210 (360)
T ss_dssp TSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGC--HHHHHHH-HSCTTCTTEEEEE
T ss_pred CCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCH--HHHHHHH-HhcccCCCEEEEE
Confidence 3568999999998776 6788889999999999998876443321 2222222 2223568999999
Q ss_pred eCCCCCCCCCH-HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHH
Q 032598 82 NKIDKPEALSK-EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDW 128 (137)
Q Consensus 82 nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 128 (137)
||+|+...... .+....+. ...+..|+++|+.++.++++.+..
T Consensus 211 nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 211 TKIDLMDKGTDAVEILEGRS----FKLKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp ECGGGCCTTCCSHHHHTTSS----SCCSSCCEEECCCCHHHHHTTCCH
T ss_pred eCCccCCCcccHHHHHcCcc----ccccCCeEEEEECChHHhccCCCH
Confidence 99999754332 22222211 122456899999988887765444
No 194
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.18 E-value=6.2e-11 Score=90.54 Aligned_cols=67 Identities=24% Similarity=0.234 Sum_probs=57.6
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 87 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 87 (137)
+..+++|||||+.+|...+..+++.+|++++|+|+++..+++....|.... . .++|+++++||+|+.
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G----ERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H----TTCEEEEEEECHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H----cCCCeEEEEECCCcc
Confidence 689999999999999999999999999999999999987777655554433 2 468999999999986
No 195
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.17 E-value=6.3e-12 Score=87.92 Aligned_cols=97 Identities=21% Similarity=0.264 Sum_probs=66.6
Q ss_pred CCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHH-------H
Q 032598 25 GGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-KEDL-------M 96 (137)
Q Consensus 25 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~-------~ 96 (137)
...++|++.+.++.+.++++++|+|++++. ..|...+.+. ..++|+++|+||+|+..... ...+ .
T Consensus 54 ~~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~--~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~ 126 (368)
T 3h2y_A 54 LTDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRF--VGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSA 126 (368)
T ss_dssp --CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHH--SSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHH--hCCCcEEEEEEChhcCCcccCHHHHHHHHHHHH
Confidence 356889999999999999999999998742 1232222221 13789999999999975432 2222 1
Q ss_pred HHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 97 EQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
...+. +...++.+||++|+|++++++.+.+..
T Consensus 127 ~~~g~-----~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 127 KQLGL-----KPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HHTTC-----CCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHcCC-----CcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 22221 112589999999999999999997654
No 196
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.17 E-value=8.7e-10 Score=82.97 Aligned_cols=69 Identities=23% Similarity=0.225 Sum_probs=56.8
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 89 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 89 (137)
++.++++||||+.+|.......++-+|++|+|+|+.+.-..+...-|.... + .++|.++++||+|....
T Consensus 84 ~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~-~----~~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 84 NYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQAN-K----YGVPRIVYVNKMDRQGA 152 (709)
T ss_dssp CEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHH-H----HTCCEEEEEECSSSTTC
T ss_pred CEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHH-H----cCCCeEEEEccccccCc
Confidence 689999999999999999999999999999999999865544443343333 2 46999999999998654
No 197
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.15 E-value=1.4e-11 Score=86.18 Aligned_cols=101 Identities=20% Similarity=0.204 Sum_probs=67.0
Q ss_pred CCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHHH----h
Q 032598 25 GGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-KEDLMEQ----M 99 (137)
Q Consensus 25 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~----~ 99 (137)
..+++|++.+.++.+.++++++|+|++++.+ .|...+... ..+.|+++|+||+|+..... ...+.+. +
T Consensus 56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~--l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~ 128 (369)
T 3ec1_A 56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRF--AADNPILLVGNKADLLPRSVKYPKLLRWMRRMA 128 (369)
T ss_dssp ---CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHH--CTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHH--hCCCCEEEEEEChhcCCCccCHHHHHHHHHHHH
Confidence 4588999999999999999999999998653 111111111 13689999999999975432 2222111 1
Q ss_pred CCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 100 GLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 100 ~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
... +.+...++.+||++|.|++++++.+.+...
T Consensus 129 ~~~--g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 129 EEL--GLCPVDVCLVSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp HTT--TCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred HHc--CCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 111 111125899999999999999999976553
No 198
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.14 E-value=3.3e-11 Score=83.50 Aligned_cols=109 Identities=13% Similarity=0.096 Sum_probs=67.4
Q ss_pred eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHH
Q 032598 14 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE 93 (137)
Q Consensus 14 ~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~ 93 (137)
.+++.+.++||||....... ..+.+|++++|+|++..+.++.+.. . ..++|.++|+||+|+.+.....
T Consensus 146 ~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~------~~~~p~ivv~NK~Dl~~~~~~~ 213 (341)
T 2p67_A 146 AAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---G------LMEVADLIVINKDDGDNHTNVA 213 (341)
T ss_dssp HTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---H------HHHHCSEEEECCCCTTCHHHHH
T ss_pred ccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---h------hhcccCEEEEECCCCCChHHHH
Confidence 34678999999997654332 4688999999999976432211100 0 0246889999999997532222
Q ss_pred ----HHHHHhCCCCC--CCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 94 ----DLMEQMGLKSI--TDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 94 ----~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
++...+..... ......++++||++|+|+++++++|.+.+.
T Consensus 214 ~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 214 IARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 22221111000 011246899999999999999999987653
No 199
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.13 E-value=1.7e-10 Score=77.09 Aligned_cols=82 Identities=13% Similarity=0.047 Sum_probs=55.2
Q ss_pred cceeeEEEeCCEEEEEEecCCccccHHhHHHHhc---------cCCEEEEEEeCCCCCChHHH-HHHHHHHhcCCC-CCC
Q 032598 6 GFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCR---------AVSAIVYVVDAADYDNLPVS-RSELHDLLSKPS-LNG 74 (137)
Q Consensus 6 ~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~---------~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~-~~~ 74 (137)
......+..++..+.+|||||+.++......+++ .+|++++|++++... +... ..++..+..... ...
T Consensus 73 ~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~ 151 (262)
T 3def_A 73 RPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIW 151 (262)
T ss_dssp CCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGG
T ss_pred eeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhh
Confidence 3445567788999999999999876544433332 789999999987754 4333 245554443211 112
Q ss_pred CcEEEEeeCCCCCC
Q 032598 75 IPLLVLGNKIDKPE 88 (137)
Q Consensus 75 ~p~ivv~nK~D~~~ 88 (137)
.|+++++||+|+..
T Consensus 152 ~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 152 CKTLLVLTHAQFSP 165 (262)
T ss_dssp GGEEEEEECTTCCC
T ss_pred cCEEEEEeCcccCC
Confidence 48999999999853
No 200
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.12 E-value=2.2e-10 Score=77.49 Aligned_cols=102 Identities=17% Similarity=0.167 Sum_probs=68.1
Q ss_pred EEecCCcc-ccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHHh
Q 032598 21 LWDLGGQP-RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQM 99 (137)
Q Consensus 21 ~~Dt~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~ 99 (137)
+-..||+. +........++.+|+++.|+|+.++.+... ..+..++ .++|.++++||+|+.+........+.+
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~ 75 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHF 75 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC--HHHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHH
Confidence 44578886 455666778999999999999999866542 1222232 568999999999997632223334444
Q ss_pred CCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 100 GLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 100 ~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
.. .+.+++.+||+++.|++++++.+.+.+.
T Consensus 76 ~~-----~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 76 EN-----QGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp HT-----TTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred Hh-----cCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 21 1235899999999999999998877654
No 201
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.07 E-value=1e-09 Score=82.69 Aligned_cols=112 Identities=16% Similarity=0.119 Sum_probs=73.0
Q ss_pred CCEEEEEEecCCccc-------------cHHhHHHHh-ccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 15 GNVTIKLWDLGGQPR-------------FRSMWERYC-RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~-------------~~~~~~~~~-~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
...++.++||||... ...+...++ +.+|.+++|+|++......+.......+. ..+.|+++|
T Consensus 148 ~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~----~~g~pvIlV 223 (772)
T 3zvr_A 148 HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD----PQGQRTIGV 223 (772)
T ss_dssp TCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHC----TTCSSEEEE
T ss_pred CCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHH----hcCCCEEEE
Confidence 345799999999543 334555565 46899999999987544443323333332 246899999
Q ss_pred eeCCCCCCCCCH-HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHH
Q 032598 81 GNKIDKPEALSK-EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 81 ~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
+||+|+.+.... ..+.. -...........++.+||++|.|++++++.+.+
T Consensus 224 lNKiDlv~~~~~~~~il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 224 ITKLDLMDEGTDARDVLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp EECTTSSCTTCCSHHHHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred EeCcccCCcchhhHHHHH-HHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 999999755332 22222 111111112345788999999999999999886
No 202
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.02 E-value=1.2e-10 Score=75.60 Aligned_cols=106 Identities=15% Similarity=0.133 Sum_probs=67.7
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC--CCH
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA--LSK 92 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--~~~ 92 (137)
.+..+.+|||+|+..... .+...++.+++|+|+++.... ...+.. . .+.|.++++||+|+.+. ...
T Consensus 107 ~~~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~~~~-~------~~~~~iiv~NK~Dl~~~~~~~~ 174 (221)
T 2wsm_A 107 SDCDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEKHPE-I------FRVADLIVINKVALAEAVGADV 174 (221)
T ss_dssp TTCSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHHCHH-H------HHTCSEEEEECGGGHHHHTCCH
T ss_pred CCCCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhhhhh-h------hhcCCEEEEecccCCcchhhHH
Confidence 356789999999521111 111357889999999875431 111111 1 24788999999998543 233
Q ss_pred HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 93 EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
.+....+... ...++++++||++|+|++++++++.+.+.+
T Consensus 175 ~~~~~~~~~~---~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 175 EKMKADAKLI---NPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp HHHHHHHHHH---CTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHh---CCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 4333333210 123569999999999999999999987754
No 203
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.01 E-value=1.2e-09 Score=75.86 Aligned_cols=107 Identities=16% Similarity=0.096 Sum_probs=65.0
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC---
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--- 91 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--- 91 (137)
.+..+.++||+|.... .....+.+|.+++|+|++.....+.+. ..+ .+.|.++++||+|+.+...
T Consensus 165 ~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~---~~i------l~~~~ivVlNK~Dl~~~~~~~~ 232 (349)
T 2www_A 165 AGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIK---RGI------IEMADLVAVTKSDGDLIVPARR 232 (349)
T ss_dssp TTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC---------------------CCSCSEEEECCCSGGGHHHHHH
T ss_pred CCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhH---HHH------HhcCCEEEEeeecCCCchhHHH
Confidence 5678999999996422 234467899999999998754322111 111 2468899999999864211
Q ss_pred -HHHHHHHhCCCCC--CCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 92 -KEDLMEQMGLKSI--TDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 92 -~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
...+...+..... .....+++++||++|+|+++++++|.+.+
T Consensus 233 ~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 233 IQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp HHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 1223332222100 01134689999999999999999998765
No 204
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.93 E-value=5.6e-09 Score=70.01 Aligned_cols=79 Identities=9% Similarity=0.047 Sum_probs=51.4
Q ss_pred eEEEeCCEEEEEEecCCccccHH-------hHHHH--hccCCEEEEEEeCCCCCChHHH-HHHHHHHhcCCC-CCCCcEE
Q 032598 10 RKVTKGNVTIKLWDLGGQPRFRS-------MWERY--CRAVSAIVYVVDAADYDNLPVS-RSELHDLLSKPS-LNGIPLL 78 (137)
Q Consensus 10 ~~~~~~~~~~~~~Dt~g~~~~~~-------~~~~~--~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~-~~~~p~i 78 (137)
..+..++..+.+|||||..++.. .+..+ .+.+|++++|+|++.. ++... ..++..+..... ....|++
T Consensus 80 ~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~ii 158 (270)
T 1h65_A 80 VSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAI 158 (270)
T ss_dssp EEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEE
T ss_pred EEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEE
Confidence 34667889999999999976532 12222 2479999999998763 34332 245444433211 1126999
Q ss_pred EEeeCCCCCCC
Q 032598 79 VLGNKIDKPEA 89 (137)
Q Consensus 79 vv~nK~D~~~~ 89 (137)
+|+||+|+...
T Consensus 159 vV~nK~Dl~~~ 169 (270)
T 1h65_A 159 VALTHAQFSPP 169 (270)
T ss_dssp EEEECCSCCCG
T ss_pred EEEECcccCCc
Confidence 99999998654
No 205
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.93 E-value=1.7e-10 Score=81.44 Aligned_cols=38 Identities=29% Similarity=0.412 Sum_probs=23.5
Q ss_pred CEEEEEEecCCcccc----HHhHHHH---hccCCEEEEEEeCCCC
Q 032598 16 NVTIKLWDLGGQPRF----RSMWERY---CRAVSAIVYVVDAADY 53 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~----~~~~~~~---~~~~~~~i~v~d~~~~ 53 (137)
..++.+|||||..+. +.+...+ ++.+|++++|+|+++.
T Consensus 70 ~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 70 LIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp EEEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred eEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 368999999998643 2333333 5889999999999875
No 206
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.88 E-value=3e-09 Score=77.92 Aligned_cols=74 Identities=19% Similarity=0.193 Sum_probs=55.5
Q ss_pred EEEEEecCCccc-----------cHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 032598 18 TIKLWDLGGQPR-----------FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 86 (137)
Q Consensus 18 ~~~~~Dt~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 86 (137)
++.+|||||... +......+++.+|++++|+|+++.........++..+.. .+.|+++|+||+|+
T Consensus 155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~pvilVlNK~Dl 230 (550)
T 2qpt_A 155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG----HEDKIRVVLNKADM 230 (550)
T ss_dssp HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----CGGGEEEEEECGGG
T ss_pred CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----cCCCEEEEEECCCc
Confidence 689999999865 556777889999999999999886555555555555432 46899999999999
Q ss_pred CCCCCHHHH
Q 032598 87 PEALSKEDL 95 (137)
Q Consensus 87 ~~~~~~~~~ 95 (137)
.........
T Consensus 231 ~~~~el~~~ 239 (550)
T 2qpt_A 231 VETQQLMRV 239 (550)
T ss_dssp SCHHHHHHH
T ss_pred cCHHHHHHH
Confidence 765444333
No 207
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.85 E-value=6.6e-10 Score=75.76 Aligned_cols=108 Identities=14% Similarity=0.221 Sum_probs=55.1
Q ss_pred CEEEEEEecCCc-------cccHHhHH-------HHhccC-------------CEEEEEEeCCCCCChHHHH-HHHHHHh
Q 032598 16 NVTIKLWDLGGQ-------PRFRSMWE-------RYCRAV-------------SAIVYVVDAADYDNLPVSR-SELHDLL 67 (137)
Q Consensus 16 ~~~~~~~Dt~g~-------~~~~~~~~-------~~~~~~-------------~~~i~v~d~~~~~~~~~~~-~~~~~~~ 67 (137)
...+++|||+|. +.+..... .+++.+ ++++++.+++. .+++... ..+..+
T Consensus 75 ~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~~l- 152 (301)
T 2qnr_A 75 KLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAI- 152 (301)
T ss_dssp CEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHHHH-
T ss_pred ccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHHHH-
Confidence 478999999998 55555554 454433 33555555543 2333332 222222
Q ss_pred cCCCCCCCcEEEEeeCCCCCCCCCHH----HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 68 SKPSLNGIPLLVLGNKIDKPEALSKE----DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 68 ~~~~~~~~p~ivv~nK~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
....|+++|+||.|+....... ++.+.... .++.++++||+++ |++++|.++.+.+.+
T Consensus 153 ----~~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~-----~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 153 ----HNKVNIVPVIAKADTLTLKERERLKKRILDEIEE-----HNIKIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp ----TTTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHH-----TTCCCCCCC----------CHHHHHHHHT
T ss_pred ----HhcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHH-----cCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence 1457899999999997542221 11121111 1345899999999 999999999988754
No 208
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.73 E-value=2.2e-07 Score=64.73 Aligned_cols=36 Identities=25% Similarity=0.209 Sum_probs=28.9
Q ss_pred EEEEEEecCCccccHH-------hHHHHhccCCEEEEEEeCCC
Q 032598 17 VTIKLWDLGGQPRFRS-------MWERYCRAVSAIVYVVDAAD 52 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~~-------~~~~~~~~~~~~i~v~d~~~ 52 (137)
..+++|||||+.++.+ ....+++.+|++++|+|+++
T Consensus 66 ~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 66 TTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp CEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred eEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 6899999999977642 22345789999999999986
No 209
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.64 E-value=1.1e-08 Score=68.51 Aligned_cols=93 Identities=14% Similarity=0.088 Sum_probs=59.5
Q ss_pred cCCccc-cHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHHhCCC
Q 032598 24 LGGQPR-FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLK 102 (137)
Q Consensus 24 t~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~ 102 (137)
.||+.. ........++.+|.++.|+|+.++.+.... .+. + . ++|.++++||+|+.+........+.+...
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~--~l~-l-----l-~k~~iivlNK~DL~~~~~~~~~~~~~~~~ 74 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY--GVD-F-----S-RKETIILLNKVDIADEKTTKKWVEFFKKQ 74 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT--TSC-C-----T-TSEEEEEEECGGGSCHHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh--HHH-h-----c-CCCcEEEEECccCCCHHHHHHHHHHHHHc
Confidence 477753 334566778999999999999987654321 111 1 1 79999999999997643223333333211
Q ss_pred CCCCCceeEEEeecccCCChHHHHHHHHH
Q 032598 103 SITDREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 103 ~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
+.++ .+||+++.|++++++.+.+
T Consensus 75 -----g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 75 -----GKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp -----TCCE-EECCTTSCHHHHHHHHCCC
T ss_pred -----CCeE-EEECCCCcCHHHHHHHHHH
Confidence 2246 9999999999999887654
No 210
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.61 E-value=1.8e-07 Score=64.74 Aligned_cols=108 Identities=10% Similarity=0.091 Sum_probs=65.3
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC---
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--- 91 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--- 91 (137)
.+..+.++||+|...-.. .....+|.+++|+|+...+..+. +.. ...++|.++++||+|+.....
T Consensus 146 ~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~-------i~~--~i~~~~~ivvlNK~Dl~~~~~~s~ 213 (337)
T 2qm8_A 146 AGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQG-------IKK--GIFELADMIAVNKADDGDGERRAS 213 (337)
T ss_dssp TTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC-------------CCT--THHHHCSEEEEECCSTTCCHHHHH
T ss_pred CCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHH-------HHH--HHhccccEEEEEchhccCchhHHH
Confidence 578999999999754332 23578999999999864332111 100 001345688889999754221
Q ss_pred --HHHHHHHhCCCCC--CCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 92 --KEDLMEQMGLKSI--TDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 92 --~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
...+...+..... .....+++.+||++++|++++++.|.+...
T Consensus 214 ~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 214 AAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 1223332321110 001235888999999999999999987653
No 211
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.49 E-value=1.1e-08 Score=72.60 Aligned_cols=105 Identities=11% Similarity=0.198 Sum_probs=43.3
Q ss_pred EEEEEEecCCcccc-------HHh-------HHHH-----------hccCCE--EEEEEeCCCCCChHHHH-HHHHHHhc
Q 032598 17 VTIKLWDLGGQPRF-------RSM-------WERY-----------CRAVSA--IVYVVDAADYDNLPVSR-SELHDLLS 68 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~-------~~~-------~~~~-----------~~~~~~--~i~v~d~~~~~~~~~~~-~~~~~~~~ 68 (137)
..+++|||+|.... ..+ ...+ ++.+++ ++++.+++. .+++... .++..+.
T Consensus 88 ~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L~- 165 (418)
T 2qag_C 88 LLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRLH- 165 (418)
T ss_dssp EEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHHT-
T ss_pred cceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-cCCCHHHHHHHHHHh-
Confidence 57999999998653 111 1122 233443 444444431 2344433 3555442
Q ss_pred CCCCCCCcEEEEeeCCCCCCCCCHHH----HHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHh
Q 032598 69 KPSLNGIPLLVLGNKIDKPEALSKED----LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 69 ~~~~~~~p~ivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
.++|+++|+||+|+........ +...+.. .++.++++||+++++++++|..+.+.
T Consensus 166 ----~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~-----~~i~~~~~sa~~~~~v~~~~~~l~~~ 224 (418)
T 2qag_C 166 ----EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQE-----HKIKIYEFPETDDEEENKLVKKIKDR 224 (418)
T ss_dssp ----TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHH-----HTCCCCCCC-----------------
T ss_pred ----ccCcEEEEEEcccCccHHHHHHHHHHHHHHHHH-----cCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence 3689999999999875433222 1111111 13458999999999999988877654
No 212
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.48 E-value=5.1e-07 Score=63.27 Aligned_cols=84 Identities=18% Similarity=0.105 Sum_probs=53.7
Q ss_pred CCcccceeeEEEeCCEEEEEEecCCccccHH-------hHHHHhccCCEEEEEEeCCCCCC-hHHHHHHHHHHhcCCCCC
Q 032598 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS-------MWERYCRAVSAIVYVVDAADYDN-LPVSRSELHDLLSKPSLN 73 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~-------~~~~~~~~~~~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~ 73 (137)
..|+..+...+...+.+++++||||.....+ .....++.||++++|+|++++.. .+.+...+.... ....
T Consensus 104 ftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~~~~i~~EL~~~~--~~l~ 181 (376)
T 4a9a_A 104 FTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLHHKQIIEKELEGVG--IRLN 181 (376)
T ss_dssp SSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHHHHHHHHHHHHHTT--EEET
T ss_pred CceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHHHHHHHHHHHHHhh--Hhhc
Confidence 3566677778889999999999999743321 22234678999999999987421 122222222221 1224
Q ss_pred CCcEEEEeeCCCCC
Q 032598 74 GIPLLVLGNKIDKP 87 (137)
Q Consensus 74 ~~p~ivv~nK~D~~ 87 (137)
..|.+++.||+|..
T Consensus 182 ~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 182 KTPPDILIKKKEKG 195 (376)
T ss_dssp CCCCCEEEEECSSS
T ss_pred cCChhhhhhHhhhh
Confidence 56778888888864
No 213
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.43 E-value=6.8e-06 Score=57.47 Aligned_cols=37 Identities=19% Similarity=0.212 Sum_probs=28.9
Q ss_pred CEEEEEEecCCccccH-------HhHHHHhccCCEEEEEEeCCC
Q 032598 16 NVTIKLWDLGGQPRFR-------SMWERYCRAVSAIVYVVDAAD 52 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~-------~~~~~~~~~~~~~i~v~d~~~ 52 (137)
+..+++|||||...+. ......++.+|++++|+|+++
T Consensus 68 ~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 68 PTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred CceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 4689999999986542 223345899999999999986
No 214
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.37 E-value=1.7e-07 Score=60.89 Aligned_cols=61 Identities=20% Similarity=0.249 Sum_probs=42.6
Q ss_pred CCcEEEEeeCCCCCCC--CCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhcC
Q 032598 74 GIPLLVLGNKIDKPEA--LSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSKS 137 (137)
Q Consensus 74 ~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~ 137 (137)
+.|.++++||+|+.+. ....+....+... ...++++++||++|+|++++|+++.+.+.+.+
T Consensus 164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 226 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVGADIKKMENDAKRI---NPDAEVVLLSLKTMEGFDKVLEFIEKSVKEVK 226 (226)
T ss_dssp TTCSEEEEECGGGHHHHTCCHHHHHHHHHHH---CTTSEEEECCTTTCTTHHHHHHHHHHHHHHCC
T ss_pred hcCCEEEEeccccCchhHHHHHHHHHHHHHh---CCCCeEEEEEecCCCCHHHHHHHHHHHHHhhC
Confidence 3677999999998643 2333333322210 12346999999999999999999998887643
No 215
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.25 E-value=4.2e-07 Score=62.04 Aligned_cols=85 Identities=18% Similarity=0.093 Sum_probs=56.2
Q ss_pred HHHhccCCEEEEEEeCCCCCC-hHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC----HHHHHHHhCCCCCCCCce
Q 032598 35 ERYCRAVSAIVYVVDAADYDN-LPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS----KEDLMEQMGLKSITDREV 109 (137)
Q Consensus 35 ~~~~~~~~~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~ 109 (137)
+..+.++|.+++|+|+.++.. ...+.+++.... ..++|.++++||+|+.+... ...+...+... +.
T Consensus 81 R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~----~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~-----g~ 151 (307)
T 1t9h_A 81 RPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE----ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNI-----GY 151 (307)
T ss_dssp TTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH----TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHH-----TC
T ss_pred HHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH----HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhC-----CC
Confidence 345788999999999997643 333444433222 25789999999999986532 23334433211 12
Q ss_pred eEEEeecccCCChHHHHHH
Q 032598 110 CCYMISCKNSTNIDTVIDW 128 (137)
Q Consensus 110 ~~~~~Sa~~~~~v~~~~~~ 128 (137)
.++.+||.++.|+++++..
T Consensus 152 ~v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 152 DVYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp CEEECCHHHHTTCTTTGGG
T ss_pred eEEEEecCCCCCHHHHHhh
Confidence 4899999999998876643
No 216
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.12 E-value=9.1e-06 Score=56.60 Aligned_cols=82 Identities=17% Similarity=0.121 Sum_probs=51.8
Q ss_pred hccCCEEEEEEeCCCCC-ChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC---HHHHHHHhCCCCCCCCceeEEE
Q 032598 38 CRAVSAIVYVVDAADYD-NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS---KEDLMEQMGLKSITDREVCCYM 113 (137)
Q Consensus 38 ~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 113 (137)
..++|.+++|.+. ++. +...+.+++-... ..++|.++|+||+|+.+... .......+... +..++.
T Consensus 128 ~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~----~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~-----G~~v~~ 197 (358)
T 2rcn_A 128 AANIDQIVIVSAI-LPELSLNIIDRYLVGCE----TLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNI-----GYRVLM 197 (358)
T ss_dssp EECCCEEEEEEES-TTTCCHHHHHHHHHHHH----HHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTT-----TCCEEE
T ss_pred HhcCCEEEEEEeC-CCCCCHHHHHHHHHHHH----hcCCCEEEEEECccCCCchhHHHHHHHHHHHHhC-----CCcEEE
Confidence 5779999987654 443 3333434432221 24688899999999976432 12233333222 234899
Q ss_pred eecccCCChHHHHHHH
Q 032598 114 ISCKNSTNIDTVIDWL 129 (137)
Q Consensus 114 ~Sa~~~~~v~~~~~~i 129 (137)
+||.++.|++++...+
T Consensus 198 ~Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 198 VSSHTQDGLKPLEEAL 213 (358)
T ss_dssp CBTTTTBTHHHHHHHH
T ss_pred EecCCCcCHHHHHHhc
Confidence 9999999999887654
No 217
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.89 E-value=4.6e-05 Score=55.38 Aligned_cols=110 Identities=19% Similarity=0.154 Sum_probs=65.7
Q ss_pred CCEEEEEEecCCccccH-HhHHH---H--hccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE-EEEeeCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFR-SMWER---Y--CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL-LVLGNKIDKP 87 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~-~~~~~---~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~~ 87 (137)
+++.+.++||||..... ..+.. . ...+|.+++|+|+........ ....+.. .+|+ .+|+||+|..
T Consensus 182 ~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~---~a~~~~~-----~~~i~gvVlNK~D~~ 253 (504)
T 2j37_W 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA---QAKAFKD-----KVDVASVIVTKLDGH 253 (504)
T ss_dssp TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH---HHHHHHH-----HHCCCCEEEECTTSC
T ss_pred CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHH---HHHHHHh-----hcCceEEEEeCCccc
Confidence 57789999999986432 12111 1 226899999999987543222 2222211 1564 8899999987
Q ss_pred CCCCH-HHHHHHhCCCCC------CCCc----eeEEEeecccCCC-hHHHHHHHHHh
Q 032598 88 EALSK-EDLMEQMGLKSI------TDRE----VCCYMISCKNSTN-IDTVIDWLVKH 132 (137)
Q Consensus 88 ~~~~~-~~~~~~~~~~~~------~~~~----~~~~~~Sa~~~~~-v~~~~~~i~~~ 132 (137)
..... -.+...++.+.. .... .+...+|+..|.| +.++++++.+.
T Consensus 254 ~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 254 AKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 54332 233344432210 0001 1124579999999 99999998765
No 218
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.42 E-value=0.00019 Score=50.61 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=24.5
Q ss_pred EEEEEEecCCccccHH-------hHHHHhccCCEEEEEEeCCCC
Q 032598 17 VTIKLWDLGGQPRFRS-------MWERYCRAVSAIVYVVDAADY 53 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~~-------~~~~~~~~~~~~i~v~d~~~~ 53 (137)
..+++|||||..++.+ .+..+++.+|++++|+|+++.
T Consensus 86 ~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 86 AFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFED 129 (396)
T ss_dssp CEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC---
T ss_pred cccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence 4699999999877554 456678999999999999864
No 219
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.50 E-value=0.006 Score=43.69 Aligned_cols=67 Identities=13% Similarity=0.113 Sum_probs=40.6
Q ss_pred CCEEEEEEecCCccccHH-hHH---H--HhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRS-MWE---R--YCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~-~~~---~--~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 88 (137)
.++.+.++||+|...... ... . ....+|.+++|+|++..... ......+... -.+..++.||+|...
T Consensus 181 ~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a---~~~a~~f~~~----~~i~gVIlTKlD~~~ 253 (443)
T 3dm5_A 181 KGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA---YNQALAFKEA----TPIGSIIVTKLDGSA 253 (443)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHHHHS----CTTEEEEEECCSSCS
T ss_pred CCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH---HHHHHHHHhh----CCCeEEEEECCCCcc
Confidence 357899999999644321 111 1 12357999999999864322 2222333322 134578999999864
No 220
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.33 E-value=0.0057 Score=43.68 Aligned_cols=108 Identities=9% Similarity=0.043 Sum_probs=58.7
Q ss_pred CCEEEEEEecCCccccHHh-HHH---H--hccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCC-c-EEEEeeCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSM-WER---Y--CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGI-P-LLVLGNKIDK 86 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~-~~~---~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-p-~ivv~nK~D~ 86 (137)
.++.+.++||||....... ... . +..+|.+++|+|+.... + .......+. ... | ..++.||+|.
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~-~~~~~~~~~-----~~~~~i~gvVlnK~D~ 250 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--Q-AGIQAKAFK-----EAVGEIGSIIVTKLDG 250 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--G-HHHHHHHHH-----TTSCSCEEEEEECSSS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--H-HHHHHHHHh-----hcccCCeEEEEeCCCC
Confidence 5678999999998654321 111 1 12589999999987642 2 222222232 224 5 7899999998
Q ss_pred CCCCC-HHHHHHHhCCCCC--------C--CCceeEEEeecccCCC-hHHHHHHHH
Q 032598 87 PEALS-KEDLMEQMGLKSI--------T--DREVCCYMISCKNSTN-IDTVIDWLV 130 (137)
Q Consensus 87 ~~~~~-~~~~~~~~~~~~~--------~--~~~~~~~~~Sa~~~~~-v~~~~~~i~ 130 (137)
..... ...+...++.+.. . ...-+...+|+..|.| +..+++.+.
T Consensus 251 ~~~~g~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~ 306 (432)
T 2v3c_C 251 SAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAE 306 (432)
T ss_dssp CSTTHHHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTT
T ss_pred ccchHHHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHH
Confidence 64322 1223343332100 0 0001123467777877 666655543
No 221
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.90 E-value=0.038 Score=34.72 Aligned_cols=69 Identities=7% Similarity=0.020 Sum_probs=48.3
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCC-CCCCcEEEEeeCCCCCC
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPS-LNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~ 88 (137)
.+.+.++|+|+.. .......+..+|.+++++.++.. + .......+.+..... ..+.++.++.|+.|...
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~ 144 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA 144 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc
Confidence 5778999998875 23445567789999999988764 3 566666665544321 24577899999998643
No 222
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.83 E-value=0.028 Score=38.12 Aligned_cols=66 Identities=14% Similarity=0.082 Sum_probs=41.9
Q ss_pred CCEEEEEEecCCccc--cHH-hHH-----HHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCC
Q 032598 15 GNVTIKLWDLGGQPR--FRS-MWE-----RYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKID 85 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~--~~~-~~~-----~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D 85 (137)
+++.+.++||||... ... +.. .....+|.+++|+|+... .+.......+.. ..| ..++.||+|
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~-----~~~i~gvVlnk~D 250 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFNQ-----ASKIGTIIITKMD 250 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHH-----TCTTEEEEEECGG
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHHh-----hCCCCEEEEeCCC
Confidence 567899999999876 422 221 124468999999998753 222222233322 245 678899999
Q ss_pred CCC
Q 032598 86 KPE 88 (137)
Q Consensus 86 ~~~ 88 (137)
...
T Consensus 251 ~~~ 253 (297)
T 1j8m_F 251 GTA 253 (297)
T ss_dssp GCT
T ss_pred CCc
Confidence 753
No 223
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.77 E-value=0.04 Score=39.38 Aligned_cols=67 Identities=16% Similarity=0.108 Sum_probs=40.1
Q ss_pred CCEEEEEEecCCccc--cH----HhHHHH--hccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 032598 15 GNVTIKLWDLGGQPR--FR----SMWERY--CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 86 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~--~~----~~~~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 86 (137)
.+..+.++||||... .. ...... ....+.+++|+|+............+... -.+..++.||+|.
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~-------~~~~gVIlTKlD~ 250 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQA-------SPIGSVIITKMDG 250 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHH-------CSSEEEEEECGGG
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcc-------cCCcEEEEecccc
Confidence 357788999999754 21 111111 12468999999998643332222222221 1346889999998
Q ss_pred CC
Q 032598 87 PE 88 (137)
Q Consensus 87 ~~ 88 (137)
..
T Consensus 251 ~a 252 (433)
T 3kl4_A 251 TA 252 (433)
T ss_dssp CS
T ss_pred cc
Confidence 63
No 224
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=94.52 E-value=0.32 Score=31.97 Aligned_cols=67 Identities=12% Similarity=0.021 Sum_probs=44.0
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE-EEeeCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL-VLGNKIDK 86 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~ 86 (137)
+.+.+.++|||+...........+..+|.+++|..+.. .+...+...++.+.. .+.+++ +|.|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQE-LTAVIVEKAINMAEE----TNTSVLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSS-CCHHHHHHHHHHHHT----TTCCEEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCcc-chHHHHHHHHHHHHh----CCCCEEEEEECCCcc
Confidence 56789999998865432222222336899999987764 456666666555543 356766 89999874
No 225
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=94.11 E-value=0.37 Score=31.63 Aligned_cols=66 Identities=5% Similarity=-0.112 Sum_probs=45.3
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 85 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 85 (137)
+.+.+.++|+|+... ......+..+|.+++++.++. .+..........+... ..+.++.+|.|+.+
T Consensus 143 ~~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~~-~s~~~~~~~~~~l~~~--~~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAEK-WAVESLDLFNFFVRKL--NLFLPIFLIITRFK 208 (267)
T ss_dssp TTCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESCT-THHHHHHHHHHHHHTT--TCCCCEEEEEEEEC
T ss_pred cCCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCCh-HHHHHHHHHHHHHHHH--hccCCEEEEEeccc
Confidence 457799999987643 234456777999999998854 4555555555555433 23567889999994
No 226
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=94.07 E-value=0.7 Score=29.69 Aligned_cols=82 Identities=10% Similarity=0.054 Sum_probs=55.5
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHH
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDL 95 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 95 (137)
.+.+.++|+|+.... .....+..+|.+++++.++. .+.......++.+... ......+-++.|+.+.........+
T Consensus 118 ~yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~~~~~~~~~~~~l~~~-~~~~~~~~~v~N~~~~~~~~~~~~~ 193 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPSL-QSLRRAGQLLKLCKEF-EKPISRIEIILNRADTNSRITSDEI 193 (245)
T ss_dssp HCSEEEEEEESSCCT--THHHHGGGCSEEEEEECSSH-HHHHHHHHHHHHHHTC-SSCCSCEEEEEESTTSCTTSCHHHH
T ss_pred hCCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCcH-HHHHHHHHHHHHHHHh-CCCccceEEEEecCCCCCCCCHHHH
Confidence 467899999875432 34456788999999998753 3455555555555432 2234557899999997766566677
Q ss_pred HHHhCC
Q 032598 96 MEQMGL 101 (137)
Q Consensus 96 ~~~~~~ 101 (137)
.+.++.
T Consensus 194 ~~~~~~ 199 (245)
T 3ea0_A 194 EKVIGR 199 (245)
T ss_dssp HHHHTS
T ss_pred HHHhCC
Confidence 777764
No 227
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=93.58 E-value=0.25 Score=34.87 Aligned_cols=36 Identities=31% Similarity=0.441 Sum_probs=27.8
Q ss_pred EEEEEEecCCccc-------cHHhHHHHhccCCEEEEEEeCCC
Q 032598 17 VTIKLWDLGGQPR-------FRSMWERYCRAVSAIVYVVDAAD 52 (137)
Q Consensus 17 ~~~~~~Dt~g~~~-------~~~~~~~~~~~~~~~i~v~d~~~ 52 (137)
..+.+||+||... ........++.+|++++|+|+.+
T Consensus 85 ~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 85 AFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp EEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5789999999533 33345566889999999999875
No 228
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=92.64 E-value=0.28 Score=32.95 Aligned_cols=83 Identities=10% Similarity=0.115 Sum_probs=51.1
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE-EEeeCCCCCCCCCHH
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL-VLGNKIDKPEALSKE 93 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~~ 93 (137)
+.+.+.++|||+....... ...+..+|.+++|+.++. .+.......+..+.......+.+++ +|.|+.+.. ....
T Consensus 155 ~~yD~ViiD~p~~~~~~~~-~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~--~~~~ 230 (307)
T 3end_A 155 DDTDVVIFDVLGDVVCGGF-AAPLQHADQAVVVTANDF-DSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT--DEVD 230 (307)
T ss_dssp SSCSEEEEEECCSSCCGGG-GGGGGTCSEEEEEECSSH-HHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC--HHHH
T ss_pred ccCCEEEEeCCCccchHHH-HHHHHHCCEEEEEecCcH-HHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH--HHHH
Confidence 3578899999876432211 234678999999997653 3455555555555543223456655 899999843 2344
Q ss_pred HHHHHhCC
Q 032598 94 DLMEQMGL 101 (137)
Q Consensus 94 ~~~~~~~~ 101 (137)
++.+.++.
T Consensus 231 ~~~~~~g~ 238 (307)
T 3end_A 231 RFCKETNF 238 (307)
T ss_dssp HHHHHHTC
T ss_pred HHHHHcCC
Confidence 55555553
No 229
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=92.07 E-value=0.45 Score=30.20 Aligned_cols=68 Identities=10% Similarity=-0.054 Sum_probs=45.5
Q ss_pred CCEEEEEEecCCc-cccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 032598 15 GNVTIKLWDLGGQ-PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 15 ~~~~~~~~Dt~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 88 (137)
+.+.+.++|||+. ... .....+..+|.+++++.++. .+.......+..+... .+.+..++.|+.+...
T Consensus 66 ~~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~-~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDA-LALDALMLTIETLQKL---GNNRFRILLTIIPPYP 134 (209)
T ss_dssp GGCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSH-HHHHHHHHHHHHHHHT---CSSSEEEEECSBCCTT
T ss_pred hcCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCc-hhHHHHHHHHHHHHhc---cCCCEEEEEEecCCcc
Confidence 3467899999876 433 23446778999999998754 3445454555544432 1566889999998764
No 230
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=91.68 E-value=0.72 Score=32.97 Aligned_cols=78 Identities=17% Similarity=0.165 Sum_probs=44.8
Q ss_pred CCEEEEEEecCCccccH-HhHH-----HHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFR-SMWE-----RYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDKP 87 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~-~~~~-----~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~ 87 (137)
.++.+.++||||..... .... .....++.+++|+|+......- .....+.. ..+ .-++.||.|..
T Consensus 182 ~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~---~~~~~f~~-----~l~i~gvVlnK~D~~ 253 (433)
T 2xxa_A 182 KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAA---NTAKAFNE-----ALPLTGVVLTKVDGD 253 (433)
T ss_dssp TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHH---HHHHHHHH-----HSCCCCEEEECTTSS
T ss_pred CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHH---HHHHHHhc-----cCCCeEEEEecCCCC
Confidence 46789999999975442 2222 1244689999999997653322 22222221 133 34689999986
Q ss_pred CCCC-HHHHHHHhC
Q 032598 88 EALS-KEDLMEQMG 100 (137)
Q Consensus 88 ~~~~-~~~~~~~~~ 100 (137)
.... ...+...++
T Consensus 254 ~~~g~~l~i~~~~~ 267 (433)
T 2xxa_A 254 ARGGAALSIRHITG 267 (433)
T ss_dssp SCCTHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHC
Confidence 4332 223444443
No 231
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=91.34 E-value=0.77 Score=29.37 Aligned_cols=81 Identities=11% Similarity=-0.050 Sum_probs=51.5
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC-CCHH
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA-LSKE 93 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~~~ 93 (137)
+.+.+.++|+|+... ......+..+|.+++|..++. .+.......+..+... ...+.-++.|+.+.... ....
T Consensus 110 ~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~-~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~~~~~~~~~~ 183 (237)
T 1g3q_A 110 DKFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEI-SCLTDTMKVGIVLKKA---GLAILGFVLNRYGRSDRDIPPE 183 (237)
T ss_dssp GGCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCH-HHHHHHHHHHHHHHHT---TCEEEEEEEEEETSCTTCCCHH
T ss_pred hcCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCc-ccHHHHHHHHHHHHhC---CCceEEEEEecCCcccchhHHH
Confidence 356789999987644 334556788999999997753 3445555555544432 12345688999986543 3455
Q ss_pred HHHHHhCC
Q 032598 94 DLMEQMGL 101 (137)
Q Consensus 94 ~~~~~~~~ 101 (137)
++.+.++.
T Consensus 184 ~~~~~~~~ 191 (237)
T 1g3q_A 184 AAEDVMEV 191 (237)
T ss_dssp HHHHHHCS
T ss_pred HHHHHhCc
Confidence 66666653
No 232
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.04 E-value=0.84 Score=32.45 Aligned_cols=110 Identities=14% Similarity=0.202 Sum_probs=58.0
Q ss_pred EEEEEecCCccccHHhHHHH-----hccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC-----
Q 032598 18 TIKLWDLGGQPRFRSMWERY-----CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP----- 87 (137)
Q Consensus 18 ~~~~~Dt~g~~~~~~~~~~~-----~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~----- 87 (137)
++++||++|..........+ +...+..+. ++..... -+.+ .....+.. .+.|++++.||.|+.
T Consensus 121 ~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~~~-kqrv-~la~aL~~----~~~p~~lV~tkpdlllLDEP 193 (413)
T 1tq4_A 121 NVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATRFK-KNDI-DIAKAISM----MKKEFYFVRTKVDSDITNEA 193 (413)
T ss_dssp TEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSCCC-HHHH-HHHHHHHH----TTCEEEEEECCHHHHHHHHH
T ss_pred CeeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCCcc-HHHH-HHHHHHHh----cCCCeEEEEecCcccccCcc
Confidence 58999999853221112222 334455554 6664311 1111 22223322 468999999999863
Q ss_pred ----CCCCHHHHHHHhCCCC------CCCCceeEEEeec--ccCCChHHHHHHHHHhhh
Q 032598 88 ----EALSKEDLMEQMGLKS------ITDREVCCYMISC--KNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 88 ----~~~~~~~~~~~~~~~~------~~~~~~~~~~~Sa--~~~~~v~~~~~~i~~~~~ 134 (137)
+.....++.+.+.... ........+.+|+ ..+.|++++.+.+.+.+-
T Consensus 194 tsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lp 252 (413)
T 1tq4_A 194 DGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP 252 (413)
T ss_dssp TTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCc
Confidence 1122222222221100 0001124788999 777789999999987764
No 233
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=90.78 E-value=0.014 Score=40.81 Aligned_cols=64 Identities=13% Similarity=0.061 Sum_probs=39.5
Q ss_pred EEEEEecCCccccH--------HhHHHHh--ccCCEEEEEEeCCCC---CChHHHHHHHHHHhcCCCCCCCcEEEEeeCC
Q 032598 18 TIKLWDLGGQPRFR--------SMWERYC--RAVSAIVYVVDAADY---DNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 84 (137)
Q Consensus 18 ~~~~~Dt~g~~~~~--------~~~~~~~--~~~~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 84 (137)
.+.++||||..... .....++ +..+.+++++++... ..+.. +......+.|+++++||.
T Consensus 213 ~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~--------l~~l~~~~~~~~~v~~k~ 284 (369)
T 3ec1_A 213 GATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLAR--------LDYIKGGRRSFVCYMANE 284 (369)
T ss_dssp TCEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEE--------EEEEESSSEEEEEEECTT
T ss_pred CeEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEE--------EEEccCCCceEEEEecCC
Confidence 37999999964221 1222222 678999999988432 12211 111122568999999999
Q ss_pred CCCCC
Q 032598 85 DKPEA 89 (137)
Q Consensus 85 D~~~~ 89 (137)
|..+.
T Consensus 285 d~~~~ 289 (369)
T 3ec1_A 285 LTVHR 289 (369)
T ss_dssp SCEEE
T ss_pred ccccc
Confidence 98654
No 234
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=89.36 E-value=2 Score=28.45 Aligned_cols=66 Identities=20% Similarity=0.268 Sum_probs=43.2
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE-EEeeCCCCC
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL-VLGNKIDKP 87 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~ 87 (137)
.+.+.++|||+...... .......+|++++|+.... .+...+....+.+.. .+.+++ +|.|+.|..
T Consensus 191 ~yD~VIIDtpp~~~~~d-~~~l~~~aD~vilVv~~~~-~~~~~~~~~~~~l~~----~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTVTD-AQLFSKFTGNVVYVVNSEN-NNKDEVKKGKELIEA----TGAKLLGVVLNRMPKD 257 (271)
T ss_dssp HCSEEEEECCCTTTCSH-HHHHHHHHCEEEEEEETTS-CCHHHHHHHHHHHHT----TTCEEEEEEEEEECC-
T ss_pred CCCEEEEeCCCCchHHH-HHHHHHHCCEEEEEEeCCC-CcHHHHHHHHHHHHh----CCCCEEEEEEeCCcCC
Confidence 45789999988643221 2234567899999998865 356666555555543 345665 889999864
No 235
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=89.33 E-value=0.84 Score=29.79 Aligned_cols=71 Identities=18% Similarity=-0.010 Sum_probs=43.7
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcC--CCCCCCcEE-EEeeCCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSK--PSLNGIPLL-VLGNKIDKPE 88 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~p~i-vv~nK~D~~~ 88 (137)
+.+.+.++|+|+..... ....+..+|.+++++.++. .++......+..+... ....+.+++ ++.|+.+...
T Consensus 110 ~~yD~iiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~~ 183 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSPL--TLNALAAAEGVVVPVQAEY-YALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGRT 183 (257)
T ss_dssp TTCSEEEEECCSSCCHH--HHHHHHHCSEEEEEEESST-HHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTTC
T ss_pred cCCCEEEEeCCCCCCHH--HHHHHHHCCeEEEEecCch-HHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCCc
Confidence 56789999998864332 2345667999999998764 2344333333333211 012456764 8999998653
No 236
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=89.28 E-value=0.99 Score=33.68 Aligned_cols=71 Identities=18% Similarity=0.189 Sum_probs=39.8
Q ss_pred CEEEEEEecCCcc-------------ccHHhHHHHhccCCEEEEEEeCCCCC-ChHHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 16 NVTIKLWDLGGQP-------------RFRSMWERYCRAVSAIVYVVDAADYD-NLPVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 16 ~~~~~~~Dt~g~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
...+.+.|.||.. ....+...+++...++++++-..+.+ .-.........+. ..+.++++|+
T Consensus 146 ~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~----~~g~rtI~Vl 221 (608)
T 3szr_A 146 VPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVD----PEGDRTIGIL 221 (608)
T ss_dssp SCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHC----SSCCSEEEEE
T ss_pred CCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHh----hcCCceEEEe
Confidence 3568999999632 23345555565554544444433322 2222333333332 2467899999
Q ss_pred eCCCCCCCC
Q 032598 82 NKIDKPEAL 90 (137)
Q Consensus 82 nK~D~~~~~ 90 (137)
||.|+....
T Consensus 222 TK~Dlv~~g 230 (608)
T 3szr_A 222 TKPDLVDKG 230 (608)
T ss_dssp ECGGGSSSS
T ss_pred cchhhcCcc
Confidence 999987543
No 237
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=89.07 E-value=0.018 Score=40.22 Aligned_cols=65 Identities=9% Similarity=0.041 Sum_probs=39.2
Q ss_pred EEEEecCCccccH--------HhHHHH--hccCCEEEEEEeCCCC---CChHHHHHHHHHHhcCCCCCCCcEEEEeeCCC
Q 032598 19 IKLWDLGGQPRFR--------SMWERY--CRAVSAIVYVVDAADY---DNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 85 (137)
Q Consensus 19 ~~~~Dt~g~~~~~--------~~~~~~--~~~~~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 85 (137)
+.++||||..... .....+ .+..+.+++++++... ..+.. .......+.|+++++||+|
T Consensus 213 ~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~--------~d~l~~~~~~~~~v~nk~d 284 (368)
T 3h2y_A 213 SSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLAR--------FDYVSGGRRAFTCHFSNRL 284 (368)
T ss_dssp CEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEE--------EEEEESSSEEEEEEECTTS
T ss_pred eEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEE--------EEEecCCCceEEEEecCcc
Confidence 8999999964321 122222 2567889999987421 11111 1111224689999999999
Q ss_pred CCCCCC
Q 032598 86 KPEALS 91 (137)
Q Consensus 86 ~~~~~~ 91 (137)
..+...
T Consensus 285 ~~~~~~ 290 (368)
T 3h2y_A 285 TIHRTK 290 (368)
T ss_dssp CEEEEE
T ss_pred cccccc
Confidence 875543
No 238
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=87.70 E-value=1.1 Score=32.09 Aligned_cols=20 Identities=10% Similarity=0.064 Sum_probs=15.7
Q ss_pred CCCcEEEEeeCCCCCCCCCH
Q 032598 73 NGIPLLVLGNKIDKPEALSK 92 (137)
Q Consensus 73 ~~~p~ivv~nK~D~~~~~~~ 92 (137)
.+.|+++|.||+|.......
T Consensus 175 ~~~~vI~Vi~KtD~Lt~~E~ 194 (427)
T 2qag_B 175 SKVNIIPIIAKADAISKSEL 194 (427)
T ss_dssp SCSEEEEEESCGGGSCHHHH
T ss_pred hCCCEEEEEcchhccchHHH
Confidence 57899999999998754333
No 239
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=87.62 E-value=0.53 Score=30.27 Aligned_cols=78 Identities=9% Similarity=0.044 Sum_probs=47.3
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHH
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKED 94 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~ 94 (137)
+.+.+.++|||+.... .....+..+|.+++|+.++. .++.......+..... .-..+.++.|+.+.. .....
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~~~~~---~~~~~~~v~N~~~~~--~~~~~ 201 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNL-NSIKTGLNIEKLAGDL---GIKKVRYVINKVRNI--KEEKL 201 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSH-HHHHHHHHHHHHHHHH---TCSCEEEEEEEECCH--HHHHH
T ss_pred CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCH-HHHHHHHHHHHHHHHc---CCccEEEEEeCCCCh--hHHHH
Confidence 4678999999875433 33455688999999998753 3444444433322221 114578899999832 22344
Q ss_pred HHHHhC
Q 032598 95 LMEQMG 100 (137)
Q Consensus 95 ~~~~~~ 100 (137)
+.+.++
T Consensus 202 ~~~~~~ 207 (254)
T 3kjh_A 202 IKKHLP 207 (254)
T ss_dssp HHHHSC
T ss_pred HHHHhc
Confidence 555554
No 240
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=87.46 E-value=0.6 Score=30.29 Aligned_cols=83 Identities=16% Similarity=0.053 Sum_probs=51.4
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCC-----CCCCcEEEEeeCCCCCC--
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPS-----LNGIPLLVLGNKIDKPE-- 88 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-----~~~~p~ivv~nK~D~~~-- 88 (137)
.+.+.++|+|+... ......+..+|.+++|+.++. .+.......+..+..... ....+.-+|.|+.+...
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~~~~ 189 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEV-SSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVS 189 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSH-HHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECHHHHH
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCCh-hHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCccccc
Confidence 67899999987543 344556778999999998753 345555555554433210 02256789999988421
Q ss_pred ---CCCHHHHHHHhCC
Q 032598 89 ---ALSKEDLMEQMGL 101 (137)
Q Consensus 89 ---~~~~~~~~~~~~~ 101 (137)
......+.+.++.
T Consensus 190 ~~~~~~~~~~~~~~~~ 205 (260)
T 3q9l_A 190 RGDMLSMEDVLEILRI 205 (260)
T ss_dssp TTSSCCHHHHHHHHCS
T ss_pred cccccCHHHHHHHhCC
Confidence 1223566666653
No 241
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=85.05 E-value=2 Score=30.70 Aligned_cols=67 Identities=16% Similarity=0.133 Sum_probs=38.5
Q ss_pred CCEEEEEEecCCccccH-HhHHHH-----hccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFR-SMWERY-----CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~-~~~~~~-----~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 88 (137)
+++.+.++||||..... ...... .-.++.+++|+|+.... +.......+... .+ ..-++.||.|...
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq---~av~~a~~f~~~---l~-i~GVIlTKlD~~~ 251 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ---EALSVARAFDEK---VG-VTGLVLTKLDGDA 251 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHH---TC-CCEEEEESGGGCS
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH---HHHHHHHHHHhc---CC-ceEEEEeCcCCcc
Confidence 46778999999975432 122211 22589999999987532 222222222211 11 2467899998753
No 242
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=84.41 E-value=0.99 Score=29.40 Aligned_cols=80 Identities=14% Similarity=0.002 Sum_probs=47.5
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC-CHH
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL-SKE 93 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~ 93 (137)
+.+.+.++|+|+... ......+..+|.+++|+.++. .+.......+..+... ...+.-++.|+.+..... ...
T Consensus 109 ~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~-~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~~~~~~~~~~ 182 (263)
T 1hyq_A 109 ESTDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEI-SSITDGLKTKIVAERL---GTKVLGVVVNRITTLGIEMAKN 182 (263)
T ss_dssp HTCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSH-HHHHHHHHHHHHHHHH---TCEEEEEEEEEECTTTHHHHHH
T ss_pred hhCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCCh-hHHHHHHHHHHHHHhc---CCCeeEEEEccCCcccccchHH
Confidence 356789999987644 334456778999999987653 2344444444444332 123456889999864321 123
Q ss_pred HHHHHhC
Q 032598 94 DLMEQMG 100 (137)
Q Consensus 94 ~~~~~~~ 100 (137)
++.+.++
T Consensus 183 ~~~~~~~ 189 (263)
T 1hyq_A 183 EIEAILE 189 (263)
T ss_dssp HHHHHTT
T ss_pred HHHHHhC
Confidence 4444444
No 243
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=83.77 E-value=7.6 Score=25.93 Aligned_cols=68 Identities=18% Similarity=0.002 Sum_probs=43.2
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 88 (137)
.+.+.++|||+...... .....+.+|++++|+..... +...+....+.+.+. .....-+|.|+.|...
T Consensus 201 ~yD~VIIDtpp~~~~~d-a~~l~~~aD~vllVv~~~~~-~~~~~~~~~~~l~~~---g~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 201 NYDLVLIDTPPILAVTD-AAIVGRHVGTTLMVARYAVN-TLKEVETSLSRFEQN---GIPVKGVILNSIFRRA 268 (286)
T ss_dssp HCSEEEEECCCTTTCTH-HHHHTTTCSEEEEEEETTTS-BHHHHHHHHHHHHHT---TCCCCEEEEEEECCCC
T ss_pred CCCEEEEcCCCCcchHH-HHHHHHHCCeEEEEEeCCCC-cHHHHHHHHHHHHhC---CCCEEEEEEcCccccc
Confidence 35689999988654321 23346779999999988753 455555555544432 1233567899998654
No 244
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=82.67 E-value=8.7 Score=25.77 Aligned_cols=67 Identities=12% Similarity=-0.002 Sum_probs=41.0
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCCC
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDKPE 88 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~ 88 (137)
.+.+.++|||+...... .......+|++++|...... +...+....+.+... +.+ .-+|.|+.|...
T Consensus 213 ~yD~VIIDtpp~~~~~d-~~~l~~~ad~vilV~~~~~~-~~~~~~~~~~~l~~~----~~~~~GvVlN~~~~~~ 280 (299)
T 3cio_A 213 HYDLVIVDTPPMLAVSD-AAVVGRSVGTSLLVARFGLN-TAKEVSLSMQRLEQA----GVNIKGAILNGVIKRA 280 (299)
T ss_dssp HCSEEEEECCCTTTCTH-HHHHGGGCSEEEEEEETTTS-CTTHHHHHHHHHHHT----TCCCCCEEEEECCCCC
T ss_pred CCCEEEEcCCCCchhHH-HHHHHHHCCEEEEEEcCCCC-hHHHHHHHHHHHHhC----CCCeEEEEEeCCccCC
Confidence 35689999988654321 22345679999999987653 344444444444332 233 237789998653
No 245
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=81.63 E-value=5.4 Score=26.41 Aligned_cols=71 Identities=10% Similarity=0.101 Sum_probs=44.0
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcC--CCCCCCcE-EEEeeCCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSK--PSLNGIPL-LVLGNKIDKPE 88 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~p~-ivv~nK~D~~~ 88 (137)
+.+.+.++|||+...... ...+..+|.+++++.++. .+...+...+..+... ....++++ -++.|+.|...
T Consensus 153 ~~yD~IiiD~pp~~~~~~--~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~ 226 (298)
T 2oze_A 153 SDYDLIIIDTVPTPSVYT--NNAIVASDYVMIPLQAEE-ESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDS 226 (298)
T ss_dssp GGCSEEEEEECSSCSHHH--HHHHHHCSEEEEEECGGG-CCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTC
T ss_pred cCCCEEEEECCCCccHHH--HHHHHHCCeEEEEecCcH-HHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCc
Confidence 357789999988654322 233456999999998764 4555555444443321 01135664 48899998754
No 246
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=79.13 E-value=2.1 Score=27.96 Aligned_cols=71 Identities=11% Similarity=0.056 Sum_probs=40.9
Q ss_pred CCEEEEEEecCCccccHHhH-HHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE-EEEeeCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMW-ERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL-LVLGNKIDK 86 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~-~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~ 86 (137)
+.+.+.++||||........ ......+|.++++..++. .+.......+..+.......+.++ -++.|+.+.
T Consensus 114 ~~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 186 (269)
T 1cp2_A 114 DDLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEM-MALYAANNISKGIQKYAKSGGVRLGGIICNSRKV 186 (269)
T ss_dssp TTCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSH-HHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSS
T ss_pred cCCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCch-hhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCc
Confidence 35789999998864332221 222356999999987753 334444433443332211134554 578999874
No 247
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=77.53 E-value=8.8 Score=26.28 Aligned_cols=92 Identities=10% Similarity=0.078 Sum_probs=48.3
Q ss_pred CEEEEEEecCCccccHHh-HHHH-----hccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 032598 16 NVTIKLWDLGGQPRFRSM-WERY-----CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 89 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~-~~~~-----~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 89 (137)
+..+.+.||+|....... +... .-..|-.++++|+.... +.......+... . -...++.||.|....
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~---~-~it~iilTKlD~~a~ 283 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEA---V-KIDGIILTKLDADAR 283 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHH---S-CCCEEEEECGGGCSC
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHh---c-CCCEEEEeCcCCccc
Confidence 345668999997543221 1111 12378899999987653 222333333221 1 124788999997432
Q ss_pred CC-HHHHHHHhCCCCCCCCceeEEEeecccCCChHH
Q 032598 90 LS-KEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 124 (137)
Q Consensus 90 ~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 124 (137)
.. .-.+....+.+ +..++ +|+++++
T Consensus 284 ~G~~l~~~~~~~~p--------i~~i~--~Ge~v~d 309 (328)
T 3e70_C 284 GGAALSISYVIDAP--------ILFVG--VGQGYDD 309 (328)
T ss_dssp CHHHHHHHHHHTCC--------EEEEE--CSSSTTC
T ss_pred hhHHHHHHHHHCCC--------EEEEe--CCCCccc
Confidence 11 22344444432 55555 6666543
No 248
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=77.37 E-value=2.2 Score=28.36 Aligned_cols=34 Identities=12% Similarity=0.091 Sum_probs=26.4
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCC
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAA 51 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~ 51 (137)
.+.+.++|+|+.. .......+..+|.+++++.++
T Consensus 103 ~yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~ 136 (286)
T 2xj4_A 103 ECDFILIDTPGGD--SAITRMAHGRADLVVTPMNDS 136 (286)
T ss_dssp HCSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESS
T ss_pred cCCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCC
Confidence 4678999998875 334456678899999999876
No 249
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=76.84 E-value=3.1 Score=27.61 Aligned_cols=45 Identities=11% Similarity=0.045 Sum_probs=27.7
Q ss_pred CCEEEEEEeCC-CCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC
Q 032598 41 VSAIVYVVDAA-DYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS 91 (137)
Q Consensus 41 ~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 91 (137)
+.+.++++|.. .+-+..+ ...+..+.. . .+++++.+|+|......
T Consensus 112 al~~lllldep~~gL~~lD-~~~l~~L~~----~-~~vI~Vi~K~D~lt~~e 157 (270)
T 3sop_A 112 VHCCLYFISPTGHSLRPLD-LEFMKHLSK----V-VNIIPVIAKADTMTLEE 157 (270)
T ss_dssp CCEEEEEECCCSSSCCHHH-HHHHHHHHT----T-SEEEEEETTGGGSCHHH
T ss_pred eeeeeEEEecCCCcCCHHH-HHHHHHHHh----c-CcEEEEEeccccCCHHH
Confidence 68888888865 3333222 122333321 2 88999999999876433
No 250
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=75.49 E-value=12 Score=25.54 Aligned_cols=80 Identities=14% Similarity=0.106 Sum_probs=44.4
Q ss_pred CCEEEEEEecCCccccHH-hHHH------Hh-----ccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEee
Q 032598 15 GNVTIKLWDLGGQPRFRS-MWER------YC-----RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGN 82 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~-~~~~------~~-----~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 82 (137)
+++.+.++||||...... .+.. .+ ..+|.+++|+++... .+.+.. ...+... . ...=++.|
T Consensus 190 ~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~-~~~~~~~---~-~i~GvVlt 262 (320)
T 1zu4_A 190 QNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQ-AEEFSKV---A-DVSGIILT 262 (320)
T ss_dssp TTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHH-HHHHTTT---S-CCCEEEEE
T ss_pred cCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHH-HHHHhhc---C-CCcEEEEe
Confidence 467899999999866432 2111 11 237899999998742 333322 2223211 1 12347899
Q ss_pred CCCCCCCCC-HHHHHHHhCC
Q 032598 83 KIDKPEALS-KEDLMEQMGL 101 (137)
Q Consensus 83 K~D~~~~~~-~~~~~~~~~~ 101 (137)
|.|...... ...+...++.
T Consensus 263 k~d~~~~~g~~~~~~~~~~~ 282 (320)
T 1zu4_A 263 KMDSTSKGGIGLAIKELLNI 282 (320)
T ss_dssp CGGGCSCTTHHHHHHHHHCC
T ss_pred CCCCCCchhHHHHHHHHHCc
Confidence 999754322 2344555554
No 251
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=75.38 E-value=3 Score=27.61 Aligned_cols=71 Identities=7% Similarity=0.038 Sum_probs=39.9
Q ss_pred CCEEEEEEecCCccccHHh-HHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSM-WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDK 86 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~-~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~ 86 (137)
+.+.+.++||||....... .......+|.++++..++. .++......+..+.......+.+ .-++.|+.+.
T Consensus 117 ~~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 189 (289)
T 2afh_E 117 DDLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEM-MAMYAANNISKGIVKYANSGSVRLGGLICNSRNT 189 (289)
T ss_dssp TTCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSSH-HHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCC
T ss_pred cCCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCCH-HHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCc
Confidence 3678999999886432222 1222357999999987653 33444333333332211113455 3578899864
No 252
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=71.65 E-value=5.6 Score=27.83 Aligned_cols=36 Identities=11% Similarity=0.044 Sum_probs=26.3
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD 52 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 52 (137)
+++.+.++|||+... ......+..+|.+++|..++.
T Consensus 246 ~~yD~VIID~pP~~~--~~~~~al~~aD~vliv~~p~~ 281 (403)
T 3ez9_A 246 DDYDFIFIDTGPHLD--PFLLNGLAASDLLLTPTPPAQ 281 (403)
T ss_dssp GGCSEEEEEECSSCS--HHHHHHHHHCSEEEEEECSSH
T ss_pred hcCCEEEEECCCCcc--HHHHHHHHHCCEEEEEecCch
Confidence 357899999987654 334445678999999997753
No 253
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=69.09 E-value=6.2 Score=26.74 Aligned_cols=80 Identities=14% Similarity=0.133 Sum_probs=42.7
Q ss_pred CCEEEEEEecCCccccHHhH-------HHHh-----ccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEee
Q 032598 15 GNVTIKLWDLGGQPRFRSMW-------ERYC-----RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGN 82 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~-------~~~~-----~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 82 (137)
.+..+.+.||||........ ...+ ...+.+++|+|+... .+.+ .....+... .++ .-++.|
T Consensus 185 ~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l-~~a~~~~~~---~~i-~gvVlT 257 (306)
T 1vma_A 185 RNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGL-VQAKIFKEA---VNV-TGIILT 257 (306)
T ss_dssp TTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHH-HHHHHHHHH---SCC-CEEEEE
T ss_pred cCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHH-HHHHHHHhc---CCC-CEEEEe
Confidence 45678999999975433211 1112 237889999998632 2222 122223221 122 356689
Q ss_pred CCCCCCCCC-HHHHHHHhCC
Q 032598 83 KIDKPEALS-KEDLMEQMGL 101 (137)
Q Consensus 83 K~D~~~~~~-~~~~~~~~~~ 101 (137)
|.|.....- ...+...++.
T Consensus 258 k~D~~~~gG~~l~~~~~~~~ 277 (306)
T 1vma_A 258 KLDGTAKGGITLAIARELGI 277 (306)
T ss_dssp CGGGCSCTTHHHHHHHHHCC
T ss_pred CCCCccchHHHHHHHHHHCC
Confidence 999754322 3445555554
No 254
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=65.62 E-value=9.7 Score=27.90 Aligned_cols=80 Identities=19% Similarity=0.248 Sum_probs=41.3
Q ss_pred CCEEEEEEecCCccccHH-hHH---HH---hc-----cCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEee
Q 032598 15 GNVTIKLWDLGGQPRFRS-MWE---RY---CR-----AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGN 82 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~-~~~---~~---~~-----~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 82 (137)
.++.+.++||+|...... ++. .. .+ ..+-+++|+|++.... .......+... .++ ..++++
T Consensus 374 ~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~---al~~ak~f~~~---~~i-tgvIlT 446 (503)
T 2yhs_A 374 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQN---AVSQAKLFHEA---VGL-TGITLT 446 (503)
T ss_dssp TTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHH---HHHHHHHHHHH---TCC-SEEEEE
T ss_pred cCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHH---HHHHHHHHHhh---cCC-CEEEEE
Confidence 355688999999854332 111 11 11 2457899999875421 11222223221 122 367899
Q ss_pred CCCCCCCC-CHHHHHHHhCC
Q 032598 83 KIDKPEAL-SKEDLMEQMGL 101 (137)
Q Consensus 83 K~D~~~~~-~~~~~~~~~~~ 101 (137)
|.|-.... ....+...++.
T Consensus 447 KLD~takgG~~lsi~~~~~~ 466 (503)
T 2yhs_A 447 KLDGTAKGGVIFSVADQFGI 466 (503)
T ss_dssp CGGGCSCCTHHHHHHHHHCC
T ss_pred cCCCcccccHHHHHHHHHCC
Confidence 99964222 22344444543
No 255
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=65.55 E-value=12 Score=25.09 Aligned_cols=80 Identities=14% Similarity=0.030 Sum_probs=41.8
Q ss_pred CCEEEEEEecCCccccHH-hHHHH-----hccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRS-MWERY-----CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~-~~~~~-----~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 88 (137)
.++.+.++||||...... .+... .-.++.+++|+|+... .+ .......+... . ...-++.||.|...
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~~-~~~~~~~~~~~---~-~i~givlnk~d~~~ 251 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QE-ALSVARAFDEK---V-GVTGLVLTKLDGDA 251 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--HH-HHHHHHHHHHH---T-CCCEEEEECGGGCS
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc--HH-HHHHHHHHhhc---C-CCCEEEEECCCCCc
Confidence 357899999998643321 11111 1248889999998642 22 22222222211 1 12357899999754
Q ss_pred CCC-HHHHHHHhCC
Q 032598 89 ALS-KEDLMEQMGL 101 (137)
Q Consensus 89 ~~~-~~~~~~~~~~ 101 (137)
... ...+....+.
T Consensus 252 ~~g~~~~~~~~~~~ 265 (295)
T 1ls1_A 252 RGGAALSARHVTGK 265 (295)
T ss_dssp SCHHHHHHHHHHCC
T ss_pred cHHHHHHHHHHHCc
Confidence 321 2334444443
No 256
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=60.29 E-value=39 Score=23.79 Aligned_cols=60 Identities=10% Similarity=0.005 Sum_probs=37.1
Q ss_pred CCCCCcEEEEeeCCCCC---C-CCCHHHHHHHhCCCCCCCCceeEEEeeccc---------------------CCChHHH
Q 032598 71 SLNGIPLLVLGNKIDKP---E-ALSKEDLMEQMGLKSITDREVCCYMISCKN---------------------STNIDTV 125 (137)
Q Consensus 71 ~~~~~p~ivv~nK~D~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---------------------~~~v~~~ 125 (137)
.....|++.++|+.|.. + +.....+....... ..+..++++||+. +.|++.+
T Consensus 221 ~lt~kp~~y~~Nv~e~~~~~~~~~~~~~~~~~~~~~---~p~~~~v~~sa~~E~~l~~l~~~~~~~~l~~~g~~~gl~~~ 297 (392)
T 1ni3_A 221 LLTAKPVIYLVNMSERDFLRQKNKYLPKIKKWIDEN---SPGDTLIPMSVAFEERLTNFTEEEAIEECKKLNTKSMLPKI 297 (392)
T ss_dssp CGGGSCEEEEEECCHHHHTTTCCSSHHHHHHHHHTT---STTCCEEEECHHHHHHHTTSCHHHHHHHHHHTTCCCSHHHH
T ss_pred hhccCceEEEEEecchhhcccchHHHHHHHHHHHhc---CCCCeEEEEEhHHHHHHhhCCHHHHHHHHHHhCCcccHHHH
Confidence 34569999999999842 1 22234443332211 1123589999986 5788888
Q ss_pred HHHHHHhh
Q 032598 126 IDWLVKHS 133 (137)
Q Consensus 126 ~~~i~~~~ 133 (137)
.....+.+
T Consensus 298 i~~~~~~L 305 (392)
T 1ni3_A 298 IVTGYNAL 305 (392)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 88776654
No 257
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=57.46 E-value=32 Score=21.40 Aligned_cols=68 Identities=12% Similarity=0.119 Sum_probs=39.2
Q ss_pred CCEEEEEEecCCcccc----HHhHHHHhccC-CEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE-EEeeCCCCC
Q 032598 15 GNVTIKLWDLGGQPRF----RSMWERYCRAV-SAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL-VLGNKIDKP 87 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~----~~~~~~~~~~~-~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~ 87 (137)
+++.+.++|+||.... ........+.. +.+++|.... ..+.......++.+.+ .+.+++ ++.|+.|..
T Consensus 107 ~~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~-~~~~~~~~~~i~~l~~----~~~~i~gvvlN~~~~~ 180 (224)
T 1byi_A 107 QQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVK-LGCINHAMLTAQVIQH----AGLTLAGWVANDVTPP 180 (224)
T ss_dssp TTCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECS-TTHHHHHHHHHHHHHH----TTCCEEEEEEECCSSC
T ss_pred HhCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCC-CCcHHHHHHHHHHHHH----CCCcEEEEEEeCCCCc
Confidence 4678999999865321 01222233332 3577888774 3455555555555532 455644 789999864
No 258
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=57.25 E-value=33 Score=21.57 Aligned_cols=53 Identities=11% Similarity=0.206 Sum_probs=32.5
Q ss_pred ccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeC
Q 032598 27 QPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNK 83 (137)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 83 (137)
....+...+..++.+..+|+++...-..+ ..+.-.++.. ....++|+|+|--.
T Consensus 66 e~tIKrrLReRI~~Sk~vIllIs~~T~~s-~~v~wEIe~A---i~~~~~PII~Vy~~ 118 (189)
T 3hyn_A 66 EKTLKPRLHTRLDNSKNIILFLSSITANS-RALREEMNYG---IGTKGLPVIVIYPD 118 (189)
T ss_dssp TTTHHHHHHHHHHTEEEEEEECCTTCCCC-HHHHHHHHHH---TTTTCCCEEEEETT
T ss_pred HHHHHHHHHHHHHhcCcEEEEEecCcccc-chhHHHHHHH---HHhcCCcEEEEECC
Confidence 34455667777889999988886554444 2333333333 32368998887544
No 259
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=56.57 E-value=34 Score=22.87 Aligned_cols=67 Identities=12% Similarity=0.038 Sum_probs=37.6
Q ss_pred CCEEEEEEecCCccccHH-hHH---HHhc--cCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRS-MWE---RYCR--AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~-~~~---~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 88 (137)
.+..+.+.||+|...... .+. ..+. ..+..++|+|++. ....+..+...+ ...+. .-++.||.|...
T Consensus 181 ~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~--~~~~~~~~~~~~----~~l~~-~giVltk~D~~~ 253 (296)
T 2px0_A 181 SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATA--KYEDMKHIVKRF----SSVPV-NQYIFTKIDETT 253 (296)
T ss_dssp GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTB--CHHHHHHHTTTT----SSSCC-CEEEEECTTTCS
T ss_pred cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCC--CHHHHHHHHHHH----hcCCC-CEEEEeCCCccc
Confidence 356789999999765432 222 2232 3678899998864 333333332222 11222 345679999764
No 260
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=49.92 E-value=44 Score=20.79 Aligned_cols=51 Identities=12% Similarity=0.139 Sum_probs=30.2
Q ss_pred hHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHh---cCCCCCCCcEEEEeeC
Q 032598 33 MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLL---SKPSLNGIPLLVLGNK 83 (137)
Q Consensus 33 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~~p~ivv~nK 83 (137)
.+...+..||++|++.---+..-.-.+...+.-+. ......++|+.+++.=
T Consensus 60 ~l~~~i~~aD~~ii~tPeYn~s~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~~S 113 (190)
T 3u7r_A 60 RLKDRIEHSDAVLAITPEYNRSYPGMIKNAIDWATRPYGQNSWKGKPAAVIGTS 113 (190)
T ss_dssp HHHHHHHTSSEEEEECCCBTTBCCHHHHHHHHHHHCSTTCCTTTTCEEEEEEEE
T ss_pred HHHHHHHhCCcEEEechhhcccCCHHHHHHHHHhcccccCCccCCCEEEEEEeC
Confidence 34556889999999986655322222333333332 2234578999888653
No 261
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=49.66 E-value=43 Score=20.62 Aligned_cols=60 Identities=10% Similarity=0.073 Sum_probs=33.8
Q ss_pred EEEEecCCccc-cHHhHHHHhc--cCCEEEEEEeCCCCC-ChHHHHHHHHHHhcCCCCCCCcEEEE-eeC
Q 032598 19 IKLWDLGGQPR-FRSMWERYCR--AVSAIVYVVDAADYD-NLPVSRSELHDLLSKPSLNGIPLLVL-GNK 83 (137)
Q Consensus 19 ~~~~Dt~g~~~-~~~~~~~~~~--~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv-~nK 83 (137)
+.+-|+-+... ..... ..++ ++|.+++.-|..+.. ..+.....+..+.+ .+.|++++ ||+
T Consensus 9 ~~iSD~H~~~~~~~~~~-~~~~~~~~D~vi~~GDl~~~~~~~~~~~~~~~~l~~----~~~pv~~v~GNH 73 (228)
T 1uf3_A 9 LATSNPMGDLEALEKFV-KLAPDTGADAIALIGNLMPKAAKSRDYAAFFRILSE----AHLPTAYVPGPQ 73 (228)
T ss_dssp EEEECCTTCHHHHHHHH-THHHHHTCSEEEEESCSSCTTCCHHHHHHHHHHHGG----GCSCEEEECCTT
T ss_pred EEEeeccCCHHHHHHHH-HHHhhcCCCEEEECCCCCCCCCCHHHHHHHHHHHHh----cCCcEEEECCCC
Confidence 45667755422 22222 2233 799999999998765 55544445544432 24566655 665
No 262
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=49.61 E-value=43 Score=20.62 Aligned_cols=53 Identities=13% Similarity=-0.041 Sum_probs=37.1
Q ss_pred hHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcC---------CCCCCCcEEEEeeCCC
Q 032598 33 MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSK---------PSLNGIPLLVLGNKID 85 (137)
Q Consensus 33 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~---------~~~~~~p~ivv~nK~D 85 (137)
.+...+..||++|+..-.-...-...+..++..+... ....++|+.++.+--.
T Consensus 60 ~~~~~i~~AD~iV~~sP~y~~~~p~~lK~~iD~~~~~~~~~~~~g~~~l~gK~~~i~~t~gg 121 (192)
T 3fvw_A 60 HAREEVQEADAIWIFSPVYNYAIPGPVKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVANG 121 (192)
T ss_dssp HHHHHHHHCSEEEEECCCBTTBCCHHHHHHHHHHTSCSCSSCTTSCCTTTTCEEEEEEESCC
T ss_pred HHHHHHHhCCEEEEECcccccCCCHHHHHHHHHhhccccccCCCCCccCCCCEEEEEEeCCC
Confidence 3455688899999998777655555566777777642 2356789988877654
No 263
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=46.39 E-value=48 Score=20.23 Aligned_cols=39 Identities=10% Similarity=0.099 Sum_probs=24.7
Q ss_pred HhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 37 YCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 37 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
.++.||++|.++|...+++=.. ..+-... ..++|++.+-
T Consensus 78 ~i~~aD~vVA~ldg~~~D~GTa--~EiGyA~----algKPVv~l~ 116 (167)
T 1s2d_A 78 GISNATCGVFLYDMDQLDDGSA--FXIGFMR----AMHKPVILVP 116 (167)
T ss_dssp HHHHCSEEEEEEESSSCCHHHH--HHHHHHH----HTTCCEEEEE
T ss_pred HHHhCCEEEEECCCCCCCCCce--eehhhHh----hCCCeEEEEE
Confidence 4788999999999876654221 1111111 2579998873
No 264
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=46.38 E-value=51 Score=20.48 Aligned_cols=50 Identities=12% Similarity=0.091 Sum_probs=34.3
Q ss_pred hHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeC
Q 032598 33 MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNK 83 (137)
Q Consensus 33 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 83 (137)
.+...+..||++|++.-.-...-...+..++..+.. ....++|+.++++=
T Consensus 78 ~~~~~i~~AD~ivi~sP~Y~~~~~~~lK~~iD~~~~-~~l~gK~~~~v~t~ 127 (191)
T 3k1y_A 78 EITSALSASDGLVVATPVFKASYTGLFKMFFDILDT-DALTGMPTIIAATA 127 (191)
T ss_dssp HHHHHHHHCSEEEEEEECBTTBSCHHHHHHHHHSCT-TTTTTCEEEEEEEE
T ss_pred HHHHHHHHCCEEEEEcCccCCcCcHHHHHHHHHhhh-hhcCCCEEEEEEeC
Confidence 344557889999999987775444445556665543 34578999988873
No 265
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=45.78 E-value=60 Score=21.13 Aligned_cols=51 Identities=10% Similarity=0.004 Sum_probs=34.1
Q ss_pred HHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcC----CCCCCCcEEEEeeCC
Q 032598 34 WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSK----PSLNGIPLLVLGNKI 84 (137)
Q Consensus 34 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~----~~~~~~p~ivv~nK~ 84 (137)
+...+..||++|++.-.-...-.-.+..++..+... ....++|+.++++--
T Consensus 92 l~~~i~~AD~iI~~sP~Yn~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~tsG 146 (247)
T 2q62_A 92 LRELSIWSEGQVWVSPERHGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVSG 146 (247)
T ss_dssp HHHHHHHCSEEEEEEECSSSSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEEECS
T ss_pred HHHHHHHCCEEEEEeCCCCCCccHHHHHHHHHhhhccCcccccCCCEEEEEEeCC
Confidence 445678899999999887754444455565555332 134678998888753
No 266
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=44.14 E-value=26 Score=25.12 Aligned_cols=49 Identities=10% Similarity=0.050 Sum_probs=31.4
Q ss_pred EEEEEEecCCccc--cHHhH--------HHHhccCCEEEEEEeCCCCCChHHHHHHHHHH
Q 032598 17 VTIKLWDLGGQPR--FRSMW--------ERYCRAVSAIVYVVDAADYDNLPVSRSELHDL 66 (137)
Q Consensus 17 ~~~~~~Dt~g~~~--~~~~~--------~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~ 66 (137)
....+||..|.+. .+..+ ..++..+.+.++|+|.++. +.+.-..|...+
T Consensus 87 ~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~ 145 (469)
T 1bif_A 87 KSFEFFLPDNEEGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNT-TRERRAMIFNFG 145 (469)
T ss_dssp CCGGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEESCCC-SHHHHHHHHHHH
T ss_pred CcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHH
Confidence 3446788888733 33333 5566678899999999986 454444454443
No 267
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=43.27 E-value=58 Score=20.27 Aligned_cols=51 Identities=18% Similarity=0.202 Sum_probs=34.6
Q ss_pred HHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcC--CCCCCCcEEEEeeCC
Q 032598 34 WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSK--PSLNGIPLLVLGNKI 84 (137)
Q Consensus 34 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~p~ivv~nK~ 84 (137)
+...+..||++|++.-.-+..-.-.+..++..+... ....++|+.++++=-
T Consensus 67 ~~~~i~~AD~iVi~tP~Y~~s~p~~LK~~iD~~~~~~~~~l~gK~v~~v~tsg 119 (199)
T 4hs4_A 67 MAQQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTASP 119 (199)
T ss_dssp HHHHHHHSSEEEEEECCBTTBCCHHHHHHHHHHTTSSSCTTTTCEEEEEEECS
T ss_pred HHHHHHhCCEEEEEcCccCCCcCHHHHHHHHHhcccCCcccCCCEEEEEEeCC
Confidence 444578899999999777654444455666666541 235789999988753
No 268
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=41.13 E-value=44 Score=20.41 Aligned_cols=50 Identities=18% Similarity=0.300 Sum_probs=32.4
Q ss_pred HHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcC--CCCCCCcEEEEeeCC
Q 032598 35 ERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSK--PSLNGIPLLVLGNKI 84 (137)
Q Consensus 35 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~p~ivv~nK~ 84 (137)
...+..+|++|+..-.-...-...+..++..+... ....++|+.++++-.
T Consensus 67 ~~~l~~aD~ii~~sP~y~~~~p~~lK~~iD~~~~~~~~~l~gK~~~~~~t~g 118 (193)
T 1rtt_A 67 REQIRAADALLFATPEYNYSMAGVLKNAIDWASRPPEQPFSGKPAAILGASA 118 (193)
T ss_dssp HHHHHHCSEEEEECCEETTEECHHHHHHHHHHTCSSSCTTTTCEEEEEEECS
T ss_pred HHHHHhCCEEEEEccccccCcCHHHHHHHHHhccccCcccCCCeEEEEEeCC
Confidence 34577899999988655543334455666666432 124678999888864
No 269
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=39.92 E-value=83 Score=21.12 Aligned_cols=78 Identities=14% Similarity=0.119 Sum_probs=41.5
Q ss_pred EEEEEEecCCccccHH-hHH-----------HHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCC
Q 032598 17 VTIKLWDLGGQPRFRS-MWE-----------RYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 84 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~~-~~~-----------~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 84 (137)
....+.||+|...... ... ......+.+++++|+....... ..+..+... .++ .+++.+|.
T Consensus 185 ~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~---~~~~~~~~~---~~~-t~iivTh~ 257 (304)
T 1rj9_A 185 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGL---EQAKKFHEA---VGL-TGVIVTKL 257 (304)
T ss_dssp CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHH---HHHHHHHHH---HCC-SEEEEECT
T ss_pred CCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHH---HHHHHHHHH---cCC-cEEEEECC
Confidence 3466899999643221 111 1123467788999987654322 222222211 122 47889999
Q ss_pred CCCCC-CCHHHHHHHhCC
Q 032598 85 DKPEA-LSKEDLMEQMGL 101 (137)
Q Consensus 85 D~~~~-~~~~~~~~~~~~ 101 (137)
|.... ...-.+...++.
T Consensus 258 d~~a~gg~~l~i~~~~~~ 275 (304)
T 1rj9_A 258 DGTAKGGVLIPIVRTLKV 275 (304)
T ss_dssp TSSCCCTTHHHHHHHHCC
T ss_pred cccccccHHHHHHHHHCC
Confidence 86432 234455555654
No 270
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=38.63 E-value=45 Score=20.12 Aligned_cols=42 Identities=17% Similarity=-0.048 Sum_probs=26.0
Q ss_pred HhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCC
Q 032598 37 YCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 84 (137)
Q Consensus 37 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 84 (137)
.++.||++|.++|..++++=.. ..+-... ..++|++.+..+-
T Consensus 75 ~i~~aD~vvA~ldg~~~D~GT~--~EiGyA~----A~gkPVv~~~~~~ 116 (157)
T 1f8y_A 75 GIKTNDIMLGVYIPDEEDVGLG--MELGYAL----SQGKYVLLVIPDE 116 (157)
T ss_dssp HHHTSSEEEEECCGGGCCHHHH--HHHHHHH----HTTCEEEEEECGG
T ss_pred HHHhCCEEEEEcCCCCCCccHH--HHHHHHH----HCCCeEEEEEcCC
Confidence 4788999999999766554221 1111111 2579998886543
No 271
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=38.05 E-value=76 Score=20.09 Aligned_cols=36 Identities=6% Similarity=0.013 Sum_probs=22.1
Q ss_pred EEEEecCCcc-ccHHhHHHH-hccCCEEEEEEeCCCCC
Q 032598 19 IKLWDLGGQP-RFRSMWERY-CRAVSAIVYVVDAADYD 54 (137)
Q Consensus 19 ~~~~Dt~g~~-~~~~~~~~~-~~~~~~~i~v~d~~~~~ 54 (137)
+.+-|+-+.. .+....... -..+|.+++.-|..+..
T Consensus 9 ~~iSDlH~~~~~~~~~l~~~~~~~~D~vi~~GDl~~~~ 46 (260)
T 2yvt_A 9 LAIKNFKERFDLLPKLKGVIAEKQPDILVVVGNILKNE 46 (260)
T ss_dssp EEEECCTTCGGGHHHHHHHHHHHCCSEEEEESCCCCCH
T ss_pred EEEeecCCChHHHHHHHHHHHhcCCCEEEECCCCCCcc
Confidence 4567775543 333333222 14789999999998754
No 272
>4eq6_A Chromosome segregation in meiosis protein 2; DNA binding protein; 1.80A {Saccharomyces cerevisiae} PDB: 4dt1_A
Probab=37.84 E-value=78 Score=20.20 Aligned_cols=45 Identities=13% Similarity=0.206 Sum_probs=34.0
Q ss_pred EEEEEecCCccccHHhHHHHhcc--CCEEEEEEeCCCCCChHHHHHH
Q 032598 18 TIKLWDLGGQPRFRSMWERYCRA--VSAIVYVVDAADYDNLPVSRSE 62 (137)
Q Consensus 18 ~~~~~Dt~g~~~~~~~~~~~~~~--~~~~i~v~d~~~~~~~~~~~~~ 62 (137)
.+++|-.|........+..++.. .+..++-+|+++..++.+..++
T Consensus 9 LlT~W~s~~~~~laq~i~~~L~~~~~~~qLyyIDAtNSFPi~qFq~l 55 (214)
T 4eq6_A 9 LITIWPSPTKNKLCQFIKQNLSKEHVVTQLFFIDATSSFPLSQFQKL 55 (214)
T ss_dssp SEEEEESCCHHHHHHHHHHHHTCTTSEEEEEEEESSCCCCHHHHHHH
T ss_pred eEEEecCCCcchHHHHHHHHhccCCCceEEEEEecCCCCcHHHHHHh
Confidence 36889999888888888877774 4466788899998877765544
No 273
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=35.40 E-value=40 Score=23.23 Aligned_cols=36 Identities=17% Similarity=-0.002 Sum_probs=26.0
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD 52 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 52 (137)
+.+.+.++|||.... ......+..+|.+++|..++.
T Consensus 258 ~~yD~VIID~p~~~~--~~~~~~l~~aD~vivv~~~~~ 293 (373)
T 3fkq_A 258 DNYDEIIVDLPFSLE--IEKLKLLSKAWRIIVVNDGSQ 293 (373)
T ss_dssp SCCSEEEEECCCCCC--HHHHHHHTTCSEEEEEECCCH
T ss_pred CCCCEEEEeCCCCCC--HHHHHHHHHCCEEEEEecCCc
Confidence 467899999984432 234556888999999987653
No 274
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=34.42 E-value=76 Score=20.43 Aligned_cols=60 Identities=3% Similarity=-0.017 Sum_probs=31.9
Q ss_pred CCEEEEEEecCCcccc-HHhHHHHh-ccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCC
Q 032598 15 GNVTIKLWDLGGQPRF-RSMWERYC-RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 85 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~-~~~~~~~~-~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 85 (137)
.++.+.+.++.+.... ........ +++||+|++ ... ... ..+..+.. .++|++++....+
T Consensus 39 ~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~-~~~-~~~-----~~~~~l~~----~~iPvV~i~~~~~ 100 (288)
T 3gv0_A 39 TQYHLVVTPHIHAKDSMVPIRYILETGSADGVIIS-KIE-PND-----PRVRFMTE----RNMPFVTHGRSDM 100 (288)
T ss_dssp SSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEE-SCC-TTC-----HHHHHHHH----TTCCEEEESCCCS
T ss_pred cCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEe-cCC-CCc-----HHHHHHhh----CCCCEEEECCcCC
Confidence 3677777777554332 23333232 679998865 222 111 12222322 5799888876654
No 275
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=34.08 E-value=20 Score=20.37 Aligned_cols=42 Identities=5% Similarity=0.008 Sum_probs=23.4
Q ss_pred HhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeC
Q 032598 37 YCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNK 83 (137)
Q Consensus 37 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 83 (137)
.++.++++|.+.......+ ..+...+. .....++|++.|--.
T Consensus 35 ~I~~~~~vIvL~G~~t~~s-~wv~~EI~----~A~~~gkpIigV~~~ 76 (111)
T 1eiw_A 35 TPEDADAVIVLAGLWGTRR-DEILGAVD----LARKSSKPIITVRPY 76 (111)
T ss_dssp CSSSCSEEEEEGGGTTTSH-HHHHHHHH----HHTTTTCCEEEECCS
T ss_pred ccccCCEEEEEeCCCcCCC-hHHHHHHH----HHHHcCCCEEEEEcC
Confidence 3677888888876654332 22322332 222367898776433
No 276
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=33.47 E-value=48 Score=22.76 Aligned_cols=35 Identities=11% Similarity=0.079 Sum_probs=26.1
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCC
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD 52 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 52 (137)
.+.+.++|||.... ......+..+|.+++++.++.
T Consensus 153 ~yD~VIID~pP~l~--~~~~~aL~~aD~viip~~~~~ 187 (361)
T 3pg5_A 153 RYDVIFFDVGPSLG--PFNRTVLLGCDAFVTPTATDL 187 (361)
T ss_dssp CCSEEEEECCSCCS--HHHHHHHTTCSEEEEEECCSH
T ss_pred CCCEEEEECCCCcC--HHHHHHHHHCCEEEEEecCCh
Confidence 67899999986542 334455677999999998753
No 277
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=32.86 E-value=84 Score=19.05 Aligned_cols=65 Identities=6% Similarity=-0.052 Sum_probs=42.4
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcC--CCCCCCcEEEEeeCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSK--PSLNGIPLLVLGNKID 85 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~p~ivv~nK~D 85 (137)
.+..+.+.|..... ...+..+|++++..-.....-...+..++..+... ....++|+.++++--.
T Consensus 33 ~g~~v~~~~l~~~~------~~~l~~aD~ii~gsP~y~g~~~~~lk~fld~~~~~~~~~l~gk~~~~~~t~g~ 99 (188)
T 2ark_A 33 EGTEVRLKHVDEAT------KEDVLWADGLAVGSPTNMGLVSWKMKRFFDDVLGDLWGEIDGKIACAFSSSGG 99 (188)
T ss_dssp TTEEEEEEETTTCC------HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHTGGGTTTSCTTCEEEEEEEESS
T ss_pred CCCeEEEEEhhhCC------HHHHHhCCEEEEEeCccCCcCCHHHHHHHHHHhhhhHHHhCCCeEEEEEECCC
Confidence 35677777775432 23466799999999877655555566666665431 2346788988888543
No 278
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=32.75 E-value=38 Score=23.51 Aligned_cols=36 Identities=11% Similarity=0.077 Sum_probs=26.0
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD 52 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 52 (137)
+++.+.++|||+.... .....+..+|.++++..++.
T Consensus 243 ~~yD~ViiD~pp~~~~--~~~~~l~~aD~vliv~~p~~ 278 (398)
T 3ez2_A 243 SDYDFILVDSGPHLDA--FLKNALASANILFTPLPPAT 278 (398)
T ss_dssp TTCSEEEEEECSCCSH--HHHHHHHHCSEEEEEECCSH
T ss_pred ccCCEEEEeCCCCccH--HHHHHHHHCCEEEEEecCch
Confidence 4678999999776533 23345668999999997753
No 279
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=32.39 E-value=1.2e+02 Score=20.53 Aligned_cols=82 Identities=10% Similarity=0.182 Sum_probs=45.2
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE-EEeeCCCCCCCCCHHH
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL-VLGNKIDKPEALSKED 94 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~~~ 94 (137)
.+.+.++|+++....... ...+..||.++++..+. ..++....+....+.......+.++. +++|+++... ...+
T Consensus 163 ~~D~v~iD~~~~~~~~~~-~~al~aAd~viIvt~~e-~~Al~~~~~l~~~i~~~~~~~~~~l~GiI~n~~~~~~--~v~~ 238 (314)
T 3fwy_A 163 DTDVVIFDVLGDVVCGGF-AAPLQHADQAVVVTAND-FDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRATD--EVDR 238 (314)
T ss_dssp SCSEEEEEECCSSCCGGG-GGGGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCCH--HHHH
T ss_pred cCceEeeccCCcchhhhh-HhHHhhCCeEEEEeCCc-HHHHHHHHHHHHHHHHHhccCCCceEEEEEcCCCchh--HHHH
Confidence 466788998765432221 12356689988888653 23445555555555443332344442 5678776432 3455
Q ss_pred HHHHhCC
Q 032598 95 LMEQMGL 101 (137)
Q Consensus 95 ~~~~~~~ 101 (137)
+.+.++.
T Consensus 239 ~a~~~~~ 245 (314)
T 3fwy_A 239 FCKETNF 245 (314)
T ss_dssp HHHHHTC
T ss_pred HHHHhCC
Confidence 6666654
No 280
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=32.27 E-value=90 Score=19.22 Aligned_cols=51 Identities=4% Similarity=0.085 Sum_probs=36.2
Q ss_pred HHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcC------------CCCCCCcEEEEeeCC
Q 032598 34 WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSK------------PSLNGIPLLVLGNKI 84 (137)
Q Consensus 34 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~------------~~~~~~p~ivv~nK~ 84 (137)
....+..||++|++.-.-...-...+..|+..+... ....+++++++.+--
T Consensus 67 ~~~~l~~AD~iV~~~P~y~~~~pa~LK~~iD~v~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g 129 (196)
T 3lcm_A 67 YRDLVTWADHLIFIFPIWWSGMPAILKGFIDRVFVADFAYSYKKVGLEGHLQGKSAWIITTHN 129 (196)
T ss_dssp HHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTEEECSSSEEESCTTCEEEEEEECS
T ss_pred HHHHHHhCCEEEEECchhhccccHHHHHHHHHHccCCcceecCCCCcccCCCCCEEEEEEcCC
Confidence 344578899999999888766666677888877431 023568888887754
No 281
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=32.06 E-value=89 Score=19.12 Aligned_cols=47 Identities=13% Similarity=0.035 Sum_probs=30.0
Q ss_pred HHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEee
Q 032598 35 ERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGN 82 (137)
Q Consensus 35 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 82 (137)
...+..+|++|++.-.-...-...+..++..+. .....++|+.++++
T Consensus 64 ~~~i~~aD~ii~~sP~y~~~~p~~lK~~ld~l~-~~~~~gK~~~~~~t 110 (197)
T 2vzf_A 64 VDATCNADGLIVATPIYKASYTGLLKAFLDILP-QFALAGKAALPLAT 110 (197)
T ss_dssp HHHHHHCSEEEEEEECBTTBCCHHHHHHHTTSC-TTTTTTCEEEEEEE
T ss_pred HHHHHHCCEEEEEeCccCCCCCHHHHHHHHhcc-ccccCCCEEEEEEE
Confidence 345778999999998776443333344443332 12346789999988
No 282
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=31.63 E-value=1.1e+02 Score=19.84 Aligned_cols=60 Identities=18% Similarity=0.238 Sum_probs=33.2
Q ss_pred CCEEEEEEecCCccccHHhHHHHh-ccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYC-RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 85 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~-~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 85 (137)
.++.+.+.++.+.+.......... ++.||+|++-... .. . .+..+.. .++|++++....+
T Consensus 39 ~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~--~~-~----~~~~l~~----~~iPvV~~~~~~~ 99 (294)
T 3qk7_A 39 RGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQP--ED-F----RLQYLQK----QNFPFLALGRSHL 99 (294)
T ss_dssp TTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCS--SC-H----HHHHHHH----TTCCEEEESCCCC
T ss_pred CCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCC--Ch-H----HHHHHHh----CCCCEEEECCCCC
Confidence 367777777765444444444444 4799987653221 11 1 2222222 4789888876543
No 283
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=30.30 E-value=1e+02 Score=20.58 Aligned_cols=62 Identities=10% Similarity=0.094 Sum_probs=36.5
Q ss_pred CEEEEEEecCCccc-cHHhHHHHhc---cCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 032598 16 NVTIKLWDLGGQPR-FRSMWERYCR---AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 87 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~-~~~~~~~~~~---~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 87 (137)
++.+.+.++.+... .......++. +.|++|++- .. .. ....+..+. ..++|++++.+..+..
T Consensus 34 g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~--~~-~~---~~~~~~~~~----~~giPvV~~~~~~~~~ 99 (350)
T 3h75_A 34 GLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVN--EQ-YV---APQILRLSQ----GSGIKLFIVNSPLTLD 99 (350)
T ss_dssp TCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEEC--CS-SH---HHHHHHHHT----TSCCEEEEEESCCCTT
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeC--ch-hh---HHHHHHHHH----hCCCcEEEEcCCCChH
Confidence 67788887766532 2344555555 799998852 21 11 112333332 2689999988876543
No 284
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=30.21 E-value=93 Score=18.77 Aligned_cols=47 Identities=23% Similarity=0.473 Sum_probs=31.5
Q ss_pred HHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEee
Q 032598 34 WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGN 82 (137)
Q Consensus 34 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 82 (137)
+...+..+|++|++.-.-...-...+..++..+.. ...++|+.++.+
T Consensus 78 ~~~~l~~aD~iI~~sP~y~~~~p~~lK~~iD~~~~--~l~gK~~~~~~~ 124 (191)
T 1t0i_A 78 WSRIVNALDIIVFVTPQYNWGYPAALKNAIDRLYH--EWHGKPALVVSY 124 (191)
T ss_dssp HHHHHHTCSEEEEEEECBTTBCCHHHHHHHHTCST--TTTTCEEEEEEE
T ss_pred HHHHHHhCCEEEEEeceECCCCCHHHHHHHHHHHh--hcCCCEEEEEEe
Confidence 44567889999999988775444445556555432 246788887765
No 285
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=29.46 E-value=1e+02 Score=19.00 Aligned_cols=51 Identities=18% Similarity=0.229 Sum_probs=33.3
Q ss_pred HHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcC--CCCCCCcEEEEeeCC
Q 032598 34 WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSK--PSLNGIPLLVLGNKI 84 (137)
Q Consensus 34 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~p~ivv~nK~ 84 (137)
+...+..||++|++.-.-+..-.-.+..++..+... ....++|+.++++--
T Consensus 66 l~~~i~~AD~iv~~sP~y~~~~~~~lK~~iD~~~~~~~~~~~gK~~~~~~~s~ 118 (193)
T 3svl_A 66 LAEQIRQADGVVIVTPEYNYSVPGGLKNAIDWLSRLPDQPLAGKPVLIQTSSM 118 (193)
T ss_dssp HHHHHHHSSEEEEEECCBTTBCCHHHHHHHHHHHTSTTCTTTTCEEEEEEECS
T ss_pred HHHHHHHCCEEEEEecccCCCCCHHHHHHHHHHhhcCccccCCCeEEEEEeCC
Confidence 345578899999998776654434455565555431 235789999888643
No 286
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=28.50 E-value=1e+02 Score=18.72 Aligned_cols=50 Identities=22% Similarity=0.207 Sum_probs=28.1
Q ss_pred HHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC
Q 032598 36 RYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS 91 (137)
Q Consensus 36 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 91 (137)
..++.||++|.++|...+++=. .-.+-... ..++|++++.+-.-......
T Consensus 65 ~~i~~aD~viA~ldg~~~D~Gt--~~EiG~A~----a~gkPVi~~~~D~R~~g~~~ 114 (162)
T 3ehd_A 65 ENVLASDLLVALLDGPTIDAGV--ASEIGVAY----AKGIPVVALYTDSRQQGADN 114 (162)
T ss_dssp HHHHTCSEEEEECCSSSCCHHH--HHHHHHHH----HTTCCEEEECCCGGGCCTTC
T ss_pred HHHHHCCEEEEECCCCCCCCCH--HHHHHHHH----HCCCEEEEEEcCcccccCCc
Confidence 3478899999999866544311 11111121 25789887766543333333
No 287
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=28.47 E-value=51 Score=19.51 Aligned_cols=55 Identities=16% Similarity=0.093 Sum_probs=31.7
Q ss_pred cccHHhHHHHhccCCEEEEEEeCC---CCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 032598 28 PRFRSMWERYCRAVSAIVYVVDAA---DYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 86 (137)
Q Consensus 28 ~~~~~~~~~~~~~~~~~i~v~d~~---~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 86 (137)
+.+...+...++.++.+|+|++.. +..... .+..+.......+..++-|.-+.|-
T Consensus 61 ~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~----El~~~~~~~~~~~~~iiPV~~~v~p 118 (154)
T 3h16_A 61 DSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQK----ELDGLFQLESSGRSRILPIWHKVSK 118 (154)
T ss_dssp CCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHH----HHHHHTCCCTTSCCCEEEEEESCCT
T ss_pred cHHHHHHHHHHHhCcEEEEEeCcchhcChHHHH----HHHHHHHHHhcCCCEEEEEEecCCH
Confidence 345556677789999999999744 233333 3333433322234556666666653
No 288
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=28.14 E-value=47 Score=19.87 Aligned_cols=50 Identities=16% Similarity=0.069 Sum_probs=31.7
Q ss_pred HHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCC
Q 032598 34 WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 84 (137)
Q Consensus 34 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 84 (137)
+...+..+|++|+..-.-...-...+..++..+.. ....++|+.++++--
T Consensus 57 ~~~~i~~aD~ii~~tP~y~~~~p~~lk~~lD~l~~-~~~~gK~~~~~~~sg 106 (174)
T 3gfs_A 57 LKQRVTKADAIVLLSPEYHSGMSGALKNALDFLSS-EQFKYKPVALLAVAG 106 (174)
T ss_dssp HHHHHHHCSSEEEEEECSSSSCCHHHHHHHHTCCH-HHHTTCEEEEEEECC
T ss_pred HHHHHHHCCEEEEEcCCcCCCCCHHHHHHHHHhCH-hhhCCCcEEEEEECC
Confidence 34457889999999988765544445555443321 123578998887644
No 289
>2nx2_A Hypothetical protein YPSA; structural genomics, unknown function, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: c.129.1.2
Probab=26.91 E-value=96 Score=19.14 Aligned_cols=19 Identities=5% Similarity=0.176 Sum_probs=12.9
Q ss_pred HHHhccCCEEEEEEeCCCC
Q 032598 35 ERYCRAVSAIVYVVDAADY 53 (137)
Q Consensus 35 ~~~~~~~~~~i~v~d~~~~ 53 (137)
...+..+|+++.++|....
T Consensus 125 ~~mvd~sD~liavyDg~~~ 143 (181)
T 2nx2_A 125 QFFIDKSDGLLLLYDPEKE 143 (181)
T ss_dssp HHHHHHSSEEEEECCTTTC
T ss_pred HHHHHHCCEEEEEEcCCCC
Confidence 3346678888888886553
No 290
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=26.69 E-value=1.1e+02 Score=18.46 Aligned_cols=50 Identities=12% Similarity=0.090 Sum_probs=33.6
Q ss_pred HHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcC------------CCCCCCcEEEEeeCCC
Q 032598 36 RYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSK------------PSLNGIPLLVLGNKID 85 (137)
Q Consensus 36 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~------------~~~~~~p~ivv~nK~D 85 (137)
..+..+|++|++.-.-...-...+..|+..+... ....++|++++.+--.
T Consensus 82 ~~l~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~ 143 (201)
T 1t5b_A 82 AELKAHDVIVIAAPMYNFNIPTQLKNYFDLIARAGITFRYTEKGPEGLVTGKRAVVLSSRGG 143 (201)
T ss_dssp HHHHHCSEEEEECCCBTTBCCHHHHHHHHHHCCBTTTEEEETTEEEESSCSCEEEEEEECSS
T ss_pred HHHHhCCEEEEEeCcccCcCCHHHHHHHHHheeCCCceecCCCCCccCCCCCeEEEEEecCC
Confidence 4577899999998777654445566777776531 1236788888877443
No 291
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=26.48 E-value=1.1e+02 Score=18.61 Aligned_cols=65 Identities=9% Similarity=0.031 Sum_probs=42.5
Q ss_pred EEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcC-------CCCCCCcEEEEeeCC
Q 032598 19 IKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSK-------PSLNGIPLLVLGNKI 84 (137)
Q Consensus 19 ~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~-------~~~~~~p~ivv~nK~ 84 (137)
+++.|.....+... ....+..||++|+.+-.-...-...+..|+..+... ....+++++++.+--
T Consensus 31 v~v~dL~~~~D~~~-~~~~l~~aD~iV~~~P~y~~~~pa~lK~~iDrv~~~g~~~~~~~~l~gK~~~~~~t~g 102 (177)
T 3ha2_A 31 VTWHPLVADFNVEQ-EQSLLLQNDRIILEFPLYWYSAPALLKQWMDTVMTTKFATGHQYALEGKELGIVVSTG 102 (177)
T ss_dssp EEEEECCTTCCHHH-HHHHHHTCSEEEEEEECBTTBCCHHHHHHHHHHSCHHHHSTTTCTTTTCEEEEEEEES
T ss_pred EEEEECCCcccHHH-HHHHHHhCCEEEEECChhhccCCHHHHHHHHHHhhcccccCCCcCCCCCEEEEEEeCC
Confidence 56667665333333 345688899999999887765566677787775431 123567887776654
No 292
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=26.40 E-value=1.5e+02 Score=19.92 Aligned_cols=40 Identities=5% Similarity=0.042 Sum_probs=30.0
Q ss_pred ccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 39 RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 39 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
.++|+++.+--.-...+.+.+..++..+... .++|+++.-
T Consensus 106 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a---~~lPiilYn 145 (306)
T 1o5k_A 106 LGANGVLVVTPYYNKPTQEGLYQHYKYISER---TDLGIVVYN 145 (306)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHTT---CSSCEEEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHh---CCCCEEEEe
Confidence 3689988887666666788888888888764 468988764
No 293
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=26.36 E-value=1.5e+02 Score=19.76 Aligned_cols=39 Identities=5% Similarity=0.098 Sum_probs=29.0
Q ss_pred cCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 40 AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 40 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
++|+++.+--.-...+.+.+..++..+... .++|+++.-
T Consensus 96 Gadavlv~~P~y~~~s~~~l~~~f~~ia~a---~~lPiilYn 134 (292)
T 2ojp_A 96 GIVGCLTVTPYYNRPSQEGLYQHFKAIAEH---TDLPQILYN 134 (292)
T ss_dssp SCSEEEEECCCSSCCCHHHHHHHHHHHHTT---CSSCEEEEC
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHh---cCCCEEEEe
Confidence 589988877666556788888888888764 468887654
No 294
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=26.23 E-value=1.4e+02 Score=19.54 Aligned_cols=49 Identities=2% Similarity=-0.026 Sum_probs=35.2
Q ss_pred HhccCCEEEEEEeCCCCCChHHHHHHHHHHhcC------------CCCCCCcEEEEeeCCC
Q 032598 37 YCRAVSAIVYVVDAADYDNLPVSRSELHDLLSK------------PSLNGIPLLVLGNKID 85 (137)
Q Consensus 37 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~------------~~~~~~p~ivv~nK~D 85 (137)
.+..||++|+.+-.-...-...+..|+..+... ....+++++++.+--.
T Consensus 90 ~l~~AD~IV~~~P~y~~s~Pa~LK~~iDrv~~~g~~f~~~~~~~~g~l~gK~~~~i~t~Gg 150 (273)
T 1d4a_A 90 KLEAADLVIFQFPLQWFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFRSKKAVLSITTGG 150 (273)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBCTTSCGGGSTTTTCEEEEEEECSS
T ss_pred HHHhCCEEEEECchhhccCCHHHHHHHHHHHhcCcccccCCCCCccccCCCEEEEEEeCCC
Confidence 378899999999888765566677788877532 1235788888877554
No 295
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=25.91 E-value=1.5e+02 Score=19.87 Aligned_cols=45 Identities=7% Similarity=0.126 Sum_probs=33.0
Q ss_pred ccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe----eCCCC
Q 032598 39 RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG----NKIDK 86 (137)
Q Consensus 39 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~----nK~D~ 86 (137)
.++|+++.+--.-...+.+.+..++..+... .++|+++.- +..++
T Consensus 109 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a---~~lPiilYn~P~~tg~~l 157 (304)
T 3l21_A 109 EGAHGLLVVTPYYSKPPQRGLQAHFTAVADA---TELPMLLYDIPGRSAVPI 157 (304)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHTS---CSSCEEEEECHHHHSSCC
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHh---cCCCEEEEeCccccCCCC
Confidence 3689988887665666788888888888765 478988774 35555
No 296
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=25.09 E-value=1.4e+02 Score=19.98 Aligned_cols=40 Identities=10% Similarity=0.173 Sum_probs=30.1
Q ss_pred ccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 39 RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 39 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
.++|+++.+--.-...+.+.+..++..+... .++|+++.-
T Consensus 106 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a---~~lPiilYn 145 (301)
T 1xky_A 106 VGVDAVMLVAPYYNKPSQEGMYQHFKAIAES---TPLPVMLYN 145 (301)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHT---CSSCEEEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHh---cCCCEEEEe
Confidence 4689988887766666788888888888765 468988654
No 297
>2p62_A Hypothetical protein PH0156; structural genomics, pyrococcu horikoshii OT3, PSI, protein structure initiative; 2.50A {Pyrococcus horikoshii} SCOP: e.67.1.1
Probab=24.21 E-value=1.6e+02 Score=19.35 Aligned_cols=62 Identities=15% Similarity=0.146 Sum_probs=44.6
Q ss_pred cceeeEEEeCCEEEEEEecCCccccHHhHHHHh-------ccCCEEEEEEeCCCCCChHHHHHHHHHHhcCC
Q 032598 6 GFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYC-------RAVSAIVYVVDAADYDNLPVSRSELHDLLSKP 70 (137)
Q Consensus 6 ~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~-------~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~ 70 (137)
+.+..++..++..+.+|...|-.........++ .+...+.++.|++..+ ...+|....++..
T Consensus 47 ~~~~~~l~~~~~~I~V~~seGk~~l~~~Lk~~l~a~~~~~~~v~~IgIarDaD~d~---~a~qSI~~~L~s~ 115 (241)
T 2p62_A 47 GEHPLVLEKDNIALVIIHAEGKQRIPKVLKSVLDSVKLGLLNVEEVYVVRDVDEGN---DVFEWVLSFLRER 115 (241)
T ss_dssp TCCCEEEEETTEEEEEECSCCTTTHHHHHHHHHHHHHHTCCCEEEEEEEEESSSSS---CHHHHHHTTCTTC
T ss_pred ccchhhhcccCceEEEEeCcchhhHHHHHHHHHhCccccccccceEEEEEecCCCc---cHHHHHHHHHHhc
Confidence 456778888999999999999887766555553 3456777888998753 3556766666553
No 298
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=23.94 E-value=34 Score=17.77 Aligned_cols=24 Identities=13% Similarity=0.292 Sum_probs=19.7
Q ss_pred EEeecccCCChHHHHHHHHHhhhh
Q 032598 112 YMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 112 ~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+.+||.+.+.-+++++.+++.+.+
T Consensus 52 itisaendeqakelleliarllqk 75 (96)
T 2jvf_A 52 ITISAENDEQAKELLELIARLLQK 75 (96)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHH
T ss_pred EEEEecChHHHHHHHHHHHHHHHH
Confidence 678999888888999888877653
No 299
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=23.93 E-value=1.4e+02 Score=19.92 Aligned_cols=40 Identities=13% Similarity=0.095 Sum_probs=30.5
Q ss_pred ccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 39 RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 39 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
.++|+++.+--.-...+.+.+..++..+... .++|+++.-
T Consensus 98 ~Gadavlv~~P~y~~~~~~~l~~~f~~va~a---~~lPiilYn 137 (300)
T 3eb2_A 98 LGADGILAILEAYFPLKDAQIESYFRAIADA---VEIPVVIYT 137 (300)
T ss_dssp HTCSEEEEEECCSSCCCHHHHHHHHHHHHHH---CSSCEEEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHH---CCCCEEEEE
Confidence 3699998887776666788888888888765 358887664
No 300
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=23.50 E-value=1.2e+02 Score=18.02 Aligned_cols=50 Identities=2% Similarity=-0.120 Sum_probs=31.6
Q ss_pred HHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCC----------CCCCCcEEEEeeCC
Q 032598 35 ERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKP----------SLNGIPLLVLGNKI 84 (137)
Q Consensus 35 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~----------~~~~~p~ivv~nK~ 84 (137)
...+..+|++|+..-.-...-...+..++..+.... ...++|++++++--
T Consensus 66 ~~~l~~aD~ii~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g 125 (184)
T 1rli_A 66 IERILQCHILIFATPIYWFGMSGTLKLFIDRWSQTLRDPRFPDFKQQMSVKQAYVIAVGG 125 (184)
T ss_dssp HHHHHTCSEEEEEEECBTTBCCHHHHHHHHTHHHHTTCTTSTTHHHHHHTSEEEEEEEES
T ss_pred HHHHHhCCEEEEEeCccccCCcHHHHHHHHHhHHhccCccccccccccCCCeEEEEEeCC
Confidence 345788999999998776554444555555443110 12467888888743
No 301
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=23.45 E-value=1.1e+02 Score=17.11 Aligned_cols=62 Identities=13% Similarity=0.065 Sum_probs=35.4
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHH--HHHHHHHHhcCCCCCCCcEEEEeeCCC
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPV--SRSELHDLLSKPSLNGIPLLVLGNKID 85 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~nK~D 85 (137)
+..+.++|..... ...+..+|.+++............ +..++..+.. ...++|+.++++--.
T Consensus 28 g~~v~~~~~~~~~------~~~l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~l~~--~l~~k~~~~~~t~g~ 91 (137)
T 2fz5_A 28 GADVESVRFEDTN------VDDVASKDVILLGCPAMGSEELEDSVVEPFFTDLAP--KLKGKKVGLFGSYGW 91 (137)
T ss_dssp TCCEEEEETTSCC------HHHHHTCSEEEEECCCBTTTBCCHHHHHHHHHHHGG--GCSSCEEEEEEEESS
T ss_pred CCeEEEEEcccCC------HHHHhcCCEEEEEccccCCCCCCHHHHHHHHHHhhh--hcCCCEEEEEEecCC
Confidence 3455666654321 123677899988876543322222 5555555533 346788998887543
No 302
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=23.01 E-value=1.5e+02 Score=19.80 Aligned_cols=52 Identities=12% Similarity=0.048 Sum_probs=32.2
Q ss_pred hHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcC----CCCCCCcEEEEeeCC
Q 032598 33 MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSK----PSLNGIPLLVLGNKI 84 (137)
Q Consensus 33 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~----~~~~~~p~ivv~nK~ 84 (137)
.+...+..||++|++.-.-+..-.-.+..++..+... ....++|+.++++=-
T Consensus 116 ~l~e~I~~ADgiV~aSP~Yn~sipg~LKn~IDrl~~~~g~~~~l~gK~v~lv~tsG 171 (279)
T 2fzv_A 116 ELRALSEWSEGQVWCSPERHGQITSVMKAQIDHLPLEMAGIRPTQGRTLAVMQVSG 171 (279)
T ss_dssp HHHHHHHHCSEEEEEEEEETTEECHHHHHHHHHSCSCBTTBCSSTTCEEEEEEECS
T ss_pred HHHHHHHHCCeEEEEcCccccCcCHHHHHHHHHHhhhcccccccCCCEEEEEEECC
Confidence 3445678899999998766643333344455544321 124678998888753
No 303
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=22.58 E-value=1.5e+02 Score=18.42 Aligned_cols=52 Identities=12% Similarity=0.148 Sum_probs=36.4
Q ss_pred HHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcC--------CCCCCCcEEEEeeCCC
Q 032598 34 WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSK--------PSLNGIPLLVLGNKID 85 (137)
Q Consensus 34 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~--------~~~~~~p~ivv~nK~D 85 (137)
....+..||++|+.+-.-...-...+..|+..+... ....+++++++.+--.
T Consensus 52 ~~~~l~~AD~iv~~~P~y~~~~pa~lK~~iDrv~~~g~~y~~~g~~l~gK~~~~~~t~G~ 111 (192)
T 3f2v_A 52 EQKLIETHDSLVWQFPIYWFNCPPLLKQWLDEVLTYGWAYGSKGKALKGRKIALAVSLGA 111 (192)
T ss_dssp HHHHHHTSSSEEEEEECBTTBCCHHHHHHHHHHSCBTTTBSSSCCSSTTCEEEEEEEESS
T ss_pred HHHHHHhCCEEEEEcChhhcCCCHHHHHHHHHHhhcCccccCCCCCCCCCEEEEEEeCCC
Confidence 345678899999999887766666677888877532 1235678877766543
No 304
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=22.41 E-value=1.6e+02 Score=20.20 Aligned_cols=40 Identities=8% Similarity=0.003 Sum_probs=30.0
Q ss_pred ccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 39 RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 39 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
.++|+++.+--.....+.+.+..++..+... .++|+++.-
T Consensus 125 ~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a---~~lPiilYn 164 (343)
T 2v9d_A 125 AGADGIVVINPYYWKVSEANLIRYFEQVADS---VTLPVMLYN 164 (343)
T ss_dssp HTCSEEEEECCSSSCCCHHHHHHHHHHHHHT---CSSCEEEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHh---cCCCEEEEe
Confidence 3689988887666656788888888888765 468987654
No 305
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A*
Probab=21.88 E-value=1.3e+02 Score=23.67 Aligned_cols=44 Identities=7% Similarity=0.113 Sum_probs=25.9
Q ss_pred HHhccCCEEEEEEeCC-----------CCCChHHHHHHHHHHhcCCCCCCCcEEEEeeC
Q 032598 36 RYCRAVSAIVYVVDAA-----------DYDNLPVSRSELHDLLSKPSLNGIPLLVLGNK 83 (137)
Q Consensus 36 ~~~~~~~~~i~v~d~~-----------~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 83 (137)
...+.+|.+|+++-.+ +..-......++..+.. .++|+|+|.+=
T Consensus 569 ~~A~~ADvvVv~vG~~~~~e~Eg~DR~~l~LP~~Q~~LI~aV~a----~~~~tVVVl~s 623 (845)
T 3abz_A 569 ELAAKHDKAVLIIGLNGEWETEGYDRENMDLPKRTNELVRAVLK----ANPNTVIVNQS 623 (845)
T ss_dssp HHHHTSSEEEEEEECCTTTSBTTBCCSSSCCCTTHHHHHHHHHH----HCSCEEEEEEC
T ss_pred HHHhcCCEEEEEEecCCccccccCCcccccCCHHHHHHHHHHHH----hCCCEEEEEeC
Confidence 4467899999998332 21112334455555554 35678877663
No 306
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=21.82 E-value=1.5e+02 Score=18.29 Aligned_cols=49 Identities=10% Similarity=0.096 Sum_probs=34.9
Q ss_pred HHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcC----------------CCCCCCcEEEEeeCC
Q 032598 36 RYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSK----------------PSLNGIPLLVLGNKI 84 (137)
Q Consensus 36 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~----------------~~~~~~p~ivv~nK~ 84 (137)
..+..||++|+..-.-...-...+..|+..+... ....+++++++.+--
T Consensus 83 ~~l~~AD~iV~~~P~y~~~~pa~lK~~iD~~~~~g~~f~~~~~~g~~~~~~~l~gK~~~~i~t~g 147 (212)
T 3r6w_A 83 GELFDSDLLVISTPMYNFSVPSGLKAWIDQIVRLGVTFDFVLDNGVAQYRPLLRGKRALIVTSRG 147 (212)
T ss_dssp HHHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEEEEECC-CEEEEECCCSCEEEEEEECS
T ss_pred HHHHhCCEEEEEcCcccccCCHHHHHHHHHHhhCCceeecccCCCCccccccCCCCEEEEEEecC
Confidence 4477899999999888766566677788877421 023567888887755
No 307
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=21.55 E-value=1.4e+02 Score=17.94 Aligned_cols=51 Identities=14% Similarity=-0.016 Sum_probs=31.5
Q ss_pred HHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcC---CCCCCCcEEEEeeCCC
Q 032598 35 ERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSK---PSLNGIPLLVLGNKID 85 (137)
Q Consensus 35 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~---~~~~~~p~ivv~nK~D 85 (137)
...+..+|++|+..-.-...-...+..++..+... ....++|+.++++-..
T Consensus 66 ~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~ 119 (200)
T 2a5l_A 66 LEDLKNCAGLALGSPTRFGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFTSTAS 119 (200)
T ss_dssp HHHHHTCSEEEEEEECBTTBCCHHHHHHHHTCHHHHHHTTTTTCEEEEEEEBSC
T ss_pred HHHHHHCCEEEEEcChhccCccHHHHHHHHHHHHHhhccccCCCEEEEEEecCC
Confidence 34577899999998776644344444555443211 1236788888887653
No 308
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=21.48 E-value=1.3e+02 Score=19.95 Aligned_cols=45 Identities=9% Similarity=0.125 Sum_probs=32.2
Q ss_pred ccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe----eCCCC
Q 032598 39 RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG----NKIDK 86 (137)
Q Consensus 39 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~----nK~D~ 86 (137)
.++|+++.+--.-...+.+.+..++..+... .++|+++.- +..++
T Consensus 94 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a---~~lPiilYn~P~~tg~~l 142 (294)
T 2ehh_A 94 VGADGALVVVPYYNKPTQRGLYEHFKTVAQE---VDIPIIIYNIPSRTCVEI 142 (294)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHH---CCSCEEEEECHHHHSCCC
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHh---cCCCEEEEeCCcccCcCC
Confidence 4689988887666666788888888888764 468887654 35555
No 309
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=21.37 E-value=1.5e+02 Score=17.96 Aligned_cols=44 Identities=9% Similarity=-0.007 Sum_probs=25.6
Q ss_pred HHHhccCCEEEEEEeC---CCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCC
Q 032598 35 ERYCRAVSAIVYVVDA---ADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 84 (137)
Q Consensus 35 ~~~~~~~~~~i~v~d~---~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 84 (137)
...++.||++|.++|+ ..+++ .....+-... ..++|++++.+..
T Consensus 62 ~~~i~~aD~vVA~ldpf~g~~~D~--GTafEiGyA~----AlgKPVi~l~~d~ 108 (161)
T 2f62_A 62 IQMIKDCDAVIADLSPFRGHEPDC--GTAFEVGCAA----ALNKMVLTFTSDR 108 (161)
T ss_dssp HHHHHHCSEEEEECCCCSSSSCCH--HHHHHHHHHH----HTTCEEEEECSCC
T ss_pred HHHHHhCCEEEEEecCCCCCCCCC--cHHHHHHHHH----HCCCEEEEEEcCc
Confidence 4558889999999984 23322 1111222121 2579999887643
No 310
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=21.01 E-value=1.7e+02 Score=18.55 Aligned_cols=50 Identities=8% Similarity=-0.081 Sum_probs=33.2
Q ss_pred HHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcC---CCCCCCcEEEEeeCC
Q 032598 35 ERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSK---PSLNGIPLLVLGNKI 84 (137)
Q Consensus 35 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~---~~~~~~p~ivv~nK~ 84 (137)
...+..||++|+..-.-...-...+..++..+... ....++|++++++-.
T Consensus 74 ~~~l~~AD~iI~~sP~y~~~~p~~lK~~iDr~~~~~~~~~l~gK~~~~i~t~g 126 (242)
T 1sqs_A 74 KKELLESDIIIISSPVYLQNVSVDTKNFIERIGGWSHLFRLAGKFVVTLDVAE 126 (242)
T ss_dssp HHHHHHCSEEEEEEEECSSSCCHHHHHHHHHTGGGTTTTTTTTCEEEEEEEES
T ss_pred HHHHHHCCEEEEEccccccCCCHHHHHHHHHHHHhccccccCCCEEEEEEeCC
Confidence 34578899999999877755555566666665321 124578888877653
No 311
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=20.87 E-value=1.4e+02 Score=19.84 Aligned_cols=40 Identities=8% Similarity=0.143 Sum_probs=29.7
Q ss_pred ccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 39 RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 39 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
.++|+++.+--.-...+.+.+..++..+... .++|+++.-
T Consensus 94 ~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a---~~lPiilYn 133 (289)
T 2yxg_A 94 VGADAVLSITPYYNKPTQEGLRKHFGKVAES---INLPIVLYN 133 (289)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHHH---CSSCEEEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHh---cCCCEEEEe
Confidence 3689988887666666788888888888764 468887654
No 312
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=20.56 E-value=1.4e+02 Score=19.82 Aligned_cols=45 Identities=11% Similarity=0.163 Sum_probs=32.2
Q ss_pred ccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe----eCCCC
Q 032598 39 RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG----NKIDK 86 (137)
Q Consensus 39 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~----nK~D~ 86 (137)
.++|+++.+--.-...+.+.+..++..+... .++|+++.- +..++
T Consensus 94 ~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a---~~lPiilYn~P~~tg~~l 142 (292)
T 2vc6_A 94 AGADGVLIVSPYYNKPTQEGIYQHFKAIDAA---STIPIIVYNIPGRSAIEI 142 (292)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHH---CSSCEEEEECHHHHSCCC
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHh---CCCCEEEEeCccccCcCC
Confidence 4689988887666666778888888888764 468888654 45555
No 313
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=20.30 E-value=1.5e+02 Score=19.71 Aligned_cols=40 Identities=10% Similarity=0.085 Sum_probs=29.6
Q ss_pred ccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 39 RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 39 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
.++|+++.+--.-...+.+.+..++..+... .++|+++.-
T Consensus 95 ~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a---~~lPiilYn 134 (291)
T 3tak_A 95 LGADAALLVTPYYNKPTQEGLYQHYKAIAEA---VELPLILYN 134 (291)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHHH---CCSCEEEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHh---cCCCEEEEe
Confidence 3689988876665556778888888888765 468988764
No 314
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=20.20 E-value=1.2e+02 Score=19.62 Aligned_cols=61 Identities=11% Similarity=0.216 Sum_probs=31.8
Q ss_pred CCEEEEEEecCCcccc-HHhHHHHh-ccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 032598 15 GNVTIKLWDLGGQPRF-RSMWERYC-RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 86 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~-~~~~~~~~-~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 86 (137)
.++.+.+.++.+.... ........ ++.||+|++- ..... ..+..+.. .++|++++....+.
T Consensus 41 ~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~--~~~~~-----~~~~~l~~----~~iPvV~i~~~~~~ 103 (295)
T 3hcw_A 41 HGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLY--SKEND-----PIKQMLID----ESMPFIVIGKPTSD 103 (295)
T ss_dssp TTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESC--CCTTC-----HHHHHHHH----TTCCEEEESCCCSS
T ss_pred CCCEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcC--cccCh-----HHHHHHHh----CCCCEEEECCCCcc
Confidence 3567777766543222 22333333 5689988753 22111 12222222 57999988776553
No 315
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=20.16 E-value=1.5e+02 Score=19.89 Aligned_cols=45 Identities=11% Similarity=0.110 Sum_probs=32.5
Q ss_pred ccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe----eCCCC
Q 032598 39 RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG----NKIDK 86 (137)
Q Consensus 39 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~----nK~D~ 86 (137)
.++|+++.+--.-...+.+.+..++..+... .++|+++.- +..++
T Consensus 102 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a---~~lPiilYn~P~~tg~~l 150 (301)
T 3m5v_A 102 HGADGILSVAPYYNKPTQQGLYEHYKAIAQS---VDIPVLLYNVPGRTGCEI 150 (301)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHH---CSSCEEEEECHHHHSCCC
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHh---CCCCEEEEeCchhhCcCC
Confidence 4689988887665666778888888888765 368988764 35555
No 316
>3zyz_A Beta-D-glucoside glucohydrolase; HET: NAG BGC; 2.10A {Hypocrea jecorina} PDB: 3zz1_A* 4i8d_A*
Probab=20.13 E-value=2e+02 Score=22.11 Aligned_cols=15 Identities=7% Similarity=0.149 Sum_probs=11.6
Q ss_pred HHHhccCCEEEEEEe
Q 032598 35 ERYCRAVSAIVYVVD 49 (137)
Q Consensus 35 ~~~~~~~~~~i~v~d 49 (137)
....+.+|.+|+++.
T Consensus 422 ~~~A~~aDv~Iv~vg 436 (713)
T 3zyz_A 422 ASAARGKDVAIVFIT 436 (713)
T ss_dssp HHHHTTCSEEEEEEE
T ss_pred HHHhhcCCEEEEEec
Confidence 445678999999984
Done!