BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032599
(137 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WJJ|A Chain A, Solution Structure Of Hypothetical Protein F20o9.120 From
Arabidopsis Thaliana
Length = 145
Score = 174 bits (442), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 85/128 (66%), Positives = 101/128 (78%), Gaps = 6/128 (4%)
Query: 9 RKPVFTKVDQLRPGTSGHTLTVKVVSTKMVL---QKGRGDGTQVRQM---RIAECLVGDE 62
RKPVF KV+QL+PGT+GHTLTVKV+ +V+ +K R + R RI ECL+GDE
Sbjct: 12 RKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDE 71
Query: 63 TGMIIFTARNDQVDLMKEGTTVILRNAKIDMFKGSMRLAVDKWGRVEVAEPANFTVKEDN 122
TG I+FTARNDQVDLMK G TVILRN++IDMFKG+MRL VDKWGR+E A+FTVKEDN
Sbjct: 72 TGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKEDN 131
Query: 123 NLSLIEYE 130
NLSL+EYE
Sbjct: 132 NLSLVEYE 139
>pdb|1O7I|A Chain A, Crystal Structure Of A Single Stranded Dna Binding Protein
pdb|1O7I|B Chain B, Crystal Structure Of A Single Stranded Dna Binding Protein
Length = 119
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 15 KVDQLRPGTSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDETGMIIFTARNDQ 74
KV L+P +TV+V+ Q +G + I+E +VGDETG + T
Sbjct: 4 KVGNLKPNMESVNVTVRVLEASEARQIQTKNGVRT----ISEAIVGDETGRVKLTLWGKH 59
Query: 75 VDLMKEGTTVILRNAKIDMFKGSMRL 100
+KEG V + NA FKG ++L
Sbjct: 60 AGSIKEGQVVKIENAWTTAFKGQVQL 85
>pdb|2KEN|A Chain A, Solution Nmr Structure Of The Ob Domain (Residues 67-166)
Of Mm0293 From Methanosarcina Mazei. Northeast
Structural Genomics Consortium Target Mar214a.
pdb|2KBN|A Chain A, Solution Nmr Structure Of The Ob Domain (Residues 67-166)
Of Mm0293 From Methanosarcina Mazei. Northeast
Structural Genomics Consortium Target Mar214a
Length = 109
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 58 LVGDETGMIIFT-ARNDQVDLMKEGTTVILRNAKIDMFKGSMRLAVDKWGRVE-VAEP 113
L+GDETG+I FT +N ++ L+++G + +LR+ + + ++ V+K +E ++EP
Sbjct: 40 LLGDETGIIKFTIWKNAELPLLEQGESYLLRSVVVGEYNDRFQVQVNKNSSIEKLSEP 97
>pdb|1AUS|L Chain L, Activated Unliganded Spinach Rubisco
pdb|1RBO|L Chain L, Spinach Rubisco In Complex With The Inhibitor
2-carboxyarabinitol-1,5- Diphosphate
pdb|1RBO|B Chain B, Spinach Rubisco In Complex With The Inhibitor
2-carboxyarabinitol-1,5- Diphosphate
pdb|1RBO|E Chain E, Spinach Rubisco In Complex With The Inhibitor
2-carboxyarabinitol-1,5- Diphosphate
pdb|1RBO|H Chain H, Spinach Rubisco In Complex With The Inhibitor
2-carboxyarabinitol-1,5- Diphosphate
pdb|1RCO|L Chain L, Spinach Rubisco In Complex With The Inhibitor
D-Xylulose-2, 2-Diol-1,5-Bisphosphate
pdb|1RCO|B Chain B, Spinach Rubisco In Complex With The Inhibitor
D-Xylulose-2, 2-Diol-1,5-Bisphosphate
pdb|1RCO|E Chain E, Spinach Rubisco In Complex With The Inhibitor
D-Xylulose-2, 2-Diol-1,5-Bisphosphate
pdb|1RCO|H Chain H, Spinach Rubisco In Complex With The Inhibitor
D-Xylulose-2, 2-Diol-1,5-Bisphosphate
pdb|1RCO|K Chain K, Spinach Rubisco In Complex With The Inhibitor
D-Xylulose-2, 2-Diol-1,5-Bisphosphate
pdb|1RCO|O Chain O, Spinach Rubisco In Complex With The Inhibitor
D-Xylulose-2, 2-Diol-1,5-Bisphosphate
pdb|1RCO|R Chain R, Spinach Rubisco In Complex With The Inhibitor
D-Xylulose-2, 2-Diol-1,5-Bisphosphate
pdb|1RCX|L Chain L, Non-activated Spinach Rubisco In Complex With Its
Substrate Ribulose-1,5-bisphosphate
pdb|1RCX|B Chain B, Non-activated Spinach Rubisco In Complex With Its
Substrate Ribulose-1,5-bisphosphate
pdb|1RCX|E Chain E, Non-activated Spinach Rubisco In Complex With Its
Substrate Ribulose-1,5-bisphosphate
pdb|1RCX|H Chain H, Non-activated Spinach Rubisco In Complex With Its
Substrate Ribulose-1,5-bisphosphate
pdb|1RCX|K Chain K, Non-activated Spinach Rubisco In Complex With Its
Substrate Ribulose-1,5-bisphosphate
pdb|1RCX|O Chain O, Non-activated Spinach Rubisco In Complex With Its
Substrate Ribulose-1,5-bisphosphate
pdb|1RCX|R Chain R, Non-activated Spinach Rubisco In Complex With Its
Substrate Ribulose-1,5-bisphosphate
pdb|1RCX|V Chain V, Non-activated Spinach Rubisco In Complex With Its
Substrate Ribulose-1,5-bisphosphate
pdb|1RCO|V Chain V, Spinach Rubisco In Complex With The Inhibitor
D-Xylulose-2, 2-Diol-1,5-Bisphosphate
pdb|1AUS|M Chain M, Activated Unliganded Spinach Rubisco
pdb|1AUS|N Chain N, Activated Unliganded Spinach Rubisco
pdb|1AUS|O Chain O, Activated Unliganded Spinach Rubisco
Length = 475
Score = 27.3 bits (59), Expect = 3.0, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 70 ARNDQVDLMKEGTTVILRNAKIDMFKGSMRLAVDKWGRVEVAEPANFTV 118
ARN+ DL +EG T+I K + + A + W ++ PA TV
Sbjct: 430 ARNEGRDLAREGNTIIREATK---WSPELAAACEVWKEIKFEFPAMDTV 475
>pdb|8RUC|A Chain A, Activated Spinach Rubisco Complexed With
2-carboxyarabinitol Bisphosphate
pdb|8RUC|C Chain C, Activated Spinach Rubisco Complexed With
2-carboxyarabinitol Bisphosphate
pdb|8RUC|E Chain E, Activated Spinach Rubisco Complexed With
2-carboxyarabinitol Bisphosphate
pdb|8RUC|G Chain G, Activated Spinach Rubisco Complexed With
2-carboxyarabinitol Bisphosphate
pdb|1IR1|A Chain A, Crystal Structure Of Spinach Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) COMPLEXED WITH CO2, MG2+
AND 2- Carboxyarabinitol-1,5-Bisphosphate
pdb|1IR1|B Chain B, Crystal Structure Of Spinach Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) COMPLEXED WITH CO2, MG2+
AND 2- Carboxyarabinitol-1,5-Bisphosphate
pdb|1IR1|C Chain C, Crystal Structure Of Spinach Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) COMPLEXED WITH CO2, MG2+
AND 2- Carboxyarabinitol-1,5-Bisphosphate
pdb|1IR1|D Chain D, Crystal Structure Of Spinach Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) COMPLEXED WITH CO2, MG2+
AND 2- Carboxyarabinitol-1,5-Bisphosphate
pdb|1UPM|B Chain B, Activated Spinach Rubisco Complexed With
2-carboxyarabinitol 2 Bisphosphat And Ca2+.
pdb|1UPM|E Chain E, Activated Spinach Rubisco Complexed With
2-carboxyarabinitol 2 Bisphosphat And Ca2+.
pdb|1UPM|H Chain H, Activated Spinach Rubisco Complexed With
2-carboxyarabinitol 2 Bisphosphat And Ca2+.
pdb|1UPM|K Chain K, Activated Spinach Rubisco Complexed With
2-carboxyarabinitol 2 Bisphosphat And Ca2+.
pdb|1UPM|L Chain L, Activated Spinach Rubisco Complexed With
2-carboxyarabinitol 2 Bisphosphat And Ca2+.
pdb|1UPM|O Chain O, Activated Spinach Rubisco Complexed With
2-carboxyarabinitol 2 Bisphosphat And Ca2+.
pdb|1UPM|R Chain R, Activated Spinach Rubisco Complexed With
2-carboxyarabinitol 2 Bisphosphat And Ca2+.
pdb|1UPM|V Chain V, Activated Spinach Rubisco Complexed With
2-carboxyarabinitol 2 Bisphosphat And Ca2+.
pdb|1UPP|A Chain A, Spinach Rubisco In Complex With 2-Carboxyarabinitol 2
Bisphosphate And Calcium.
pdb|1UPP|C Chain C, Spinach Rubisco In Complex With 2-Carboxyarabinitol 2
Bisphosphate And Calcium.
pdb|1UPP|E Chain E, Spinach Rubisco In Complex With 2-Carboxyarabinitol 2
Bisphosphate And Calcium.
pdb|1UPP|G Chain G, Spinach Rubisco In Complex With 2-Carboxyarabinitol 2
Bisphosphate And Calcium
Length = 475
Score = 27.3 bits (59), Expect = 3.0, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 70 ARNDQVDLMKEGTTVILRNAKIDMFKGSMRLAVDKWGRVEVAEPANFTV 118
ARN+ DL +EG T+I K + + A + W ++ PA TV
Sbjct: 430 ARNEGRDLAREGNTIIREATK---WSPELAAACEVWKEIKFEFPAMDTV 475
>pdb|1AA1|L Chain L, Activated Spinach Rubisco In Complex With The Product 3-
Phosphoglycerate
pdb|1AA1|B Chain B, Activated Spinach Rubisco In Complex With The Product 3-
Phosphoglycerate
pdb|1AA1|E Chain E, Activated Spinach Rubisco In Complex With The Product 3-
Phosphoglycerate
pdb|1AA1|H Chain H, Activated Spinach Rubisco In Complex With The Product 3-
Phosphoglycerate
pdb|1RXO|L Chain L, Activated Spinach Rubisco In Complex With Its Substrate
Ribulose-1,5- Bisphosphate And Calcium
pdb|1RXO|B Chain B, Activated Spinach Rubisco In Complex With Its Substrate
Ribulose-1,5- Bisphosphate And Calcium
pdb|1RXO|E Chain E, Activated Spinach Rubisco In Complex With Its Substrate
Ribulose-1,5- Bisphosphate And Calcium
pdb|1RXO|H Chain H, Activated Spinach Rubisco In Complex With Its Substrate
Ribulose-1,5- Bisphosphate And Calcium
Length = 475
Score = 27.3 bits (59), Expect = 3.0, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 70 ARNDQVDLMKEGTTVILRNAKIDMFKGSMRLAVDKWGRVEVAEPANFTV 118
ARN+ DL +EG T+I K + + A + W ++ PA TV
Sbjct: 430 ARNEGRDLAREGNTIIREATK---WSPELAAACEVWKEIKFEFPAMDTV 475
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,711,034
Number of Sequences: 62578
Number of extensions: 135010
Number of successful extensions: 435
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 431
Number of HSP's gapped (non-prelim): 7
length of query: 137
length of database: 14,973,337
effective HSP length: 89
effective length of query: 48
effective length of database: 9,403,895
effective search space: 451386960
effective search space used: 451386960
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)