BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032599
(137 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O49453|Y4844_ARATH Uncharacterized protein At4g28440 OS=Arabidopsis thaliana
GN=At4g28440 PE=1 SV=1
Length = 153
Score = 180 bits (457), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 88/132 (66%), Positives = 105/132 (79%), Gaps = 6/132 (4%)
Query: 9 RKPVFTKVDQLRPGTSGHTLTVKVVSTKMVL---QKGRGDGTQVRQM---RIAECLVGDE 62
RKPVF KV+QL+PGT+GHTLTVKV+ +V+ +K R + R RI ECL+GDE
Sbjct: 18 RKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDE 77
Query: 63 TGMIIFTARNDQVDLMKEGTTVILRNAKIDMFKGSMRLAVDKWGRVEVAEPANFTVKEDN 122
TG I+FTARNDQVDLMK G TVILRN++IDMFKG+MRL VDKWGR+E A+FTVKEDN
Sbjct: 78 TGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKEDN 137
Query: 123 NLSLIEYELVNV 134
NLSL+EYEL+NV
Sbjct: 138 NLSLVEYELINV 149
>sp|Q8R2Y9|SOSB1_MOUSE SOSS complex subunit B1 OS=Mus musculus GN=Nabp2 PE=2 SV=1
Length = 212
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Query: 37 MVLQKGR----GDGTQVRQMRIAECLVGDETGMIIFTARNDQVDLMKEGTTVILRNAKID 92
+VL+ GR DG +VR C V D+TG I + +D +L++ G + L
Sbjct: 22 IVLETGRVTKTKDGHEVR-----TCKVADKTGSINISVWDDVGNLIQPGDIIRLTKGYAS 76
Query: 93 MFKGSMRLAVDKWGRVE 109
+FKG + L + G ++
Sbjct: 77 VFKGCLTLYTGRGGDLQ 93
>sp|Q3SWT1|SOSB1_RAT SOSS complex subunit B1 OS=Rattus norvegicus GN=Nabp2 PE=2 SV=1
Length = 211
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Query: 37 MVLQKGR----GDGTQVRQMRIAECLVGDETGMIIFTARNDQVDLMKEGTTVILRNAKID 92
+VL+ GR DG +VR C V D+TG I + +D +L++ G + L
Sbjct: 22 IVLETGRVTKTKDGHEVR-----TCKVADKTGSINISVWDDVGNLIQPGDIIRLTKGYAS 76
Query: 93 MFKGSMRLAVDKWGRVE 109
+FKG + L + G ++
Sbjct: 77 VFKGCLTLYTGRGGDLQ 93
>sp|A6QLK2|SOSB1_BOVIN SOSS complex subunit B1 OS=Bos taurus GN=NABP2 PE=2 SV=1
Length = 211
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Query: 37 MVLQKGR----GDGTQVRQMRIAECLVGDETGMIIFTARNDQVDLMKEGTTVILRNAKID 92
+VL+ GR DG +VR C V D+TG I + +D +L++ G + L
Sbjct: 22 IVLETGRVTKTKDGHEVRT-----CKVADKTGSINISVWDDVGNLIQPGDIIRLTKGYAS 76
Query: 93 MFKGSMRLAVDKWGRVE 109
+FKG + L + G ++
Sbjct: 77 VFKGCLTLYTGRGGDLQ 93
>sp|Q9BQ15|SOSB1_HUMAN SOSS complex subunit B1 OS=Homo sapiens GN=NABP2 PE=1 SV=1
Length = 211
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Query: 37 MVLQKGR----GDGTQVRQMRIAECLVGDETGMIIFTARNDQVDLMKEGTTVILRNAKID 92
+VL+ GR DG +VR C V D+TG I + +D +L++ G + L
Sbjct: 22 IVLETGRVTKTKDGHEVRT-----CKVADKTGSINISVWDDVGNLIQPGDIIRLTKGYAS 76
Query: 93 MFKGSMRLAVDKWGRVE 109
+FKG + L + G ++
Sbjct: 77 VFKGCLTLYTGRGGDLQ 93
>sp|Q66K94|SOSB1_XENTR SOSS complex subunit B1 OS=Xenopus tropicalis GN=nabp2 PE=2 SV=1
Length = 203
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 37 MVLQKGR----GDGTQVRQMRIAECLVGDETGMIIFTARNDQVDLMKEGTTVILRNAKID 92
+VL+ GR DG +VR C V D+TG I + +D + ++ G + L
Sbjct: 22 IVLETGRVTKTKDGHEVRT-----CKVADKTGSINISVWDDLGNFIQPGDIIRLTKGYAS 76
Query: 93 MFKGSMRLAVDKWGRVE 109
+FKG + L + G ++
Sbjct: 77 LFKGCLTLYTGRGGDLQ 93
>sp|Q6DE02|SOB1A_XENLA SOSS complex subunit B1-A OS=Xenopus laevis GN=nabp2-a PE=2 SV=1
Length = 203
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 37 MVLQKGR----GDGTQVRQMRIAECLVGDETGMIIFTARNDQVDLMKEGTTVILRNAKID 92
+VL+ GR DG +VR C V D+TG I + ++ + ++ G + L
Sbjct: 22 IVLETGRVTKTKDGHEVRT-----CKVADKTGSINISVWDELGNFIQPGDIIRLSKGYAS 76
Query: 93 MFKGSMRLAVDKWGRVE 109
+FKG + L + G ++
Sbjct: 77 LFKGCLTLYTGRGGDLQ 93
>sp|Q6NRF9|SOB1B_XENLA SOSS complex subunit B1-B OS=Xenopus laevis GN=nabp2-b PE=2 SV=1
Length = 203
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 37 MVLQKGR----GDGTQVRQMRIAECLVGDETGMIIFTARNDQVDLMKEGTTVILRNAKID 92
+VL+ GR DG +VR C V D+TG I + ++ + ++ G + L
Sbjct: 22 IVLETGRVTKTKDGHEVRT-----CKVADKTGTINISVWDEVGNFIQPGDIIRLTKGYAS 76
Query: 93 MFKGSMRLAVDKWGRVE 109
+FKG + L + G ++
Sbjct: 77 LFKGCLTLYTGRGGDLQ 93
>sp|Q9AJ81|SCA4_RICRH Antigenic heat-stable 120 kDa protein (Fragment) OS=Rickettsia
rhipicephali GN=sca4 PE=4 SV=1
Length = 1013
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 72 NDQVDLMKEGTTVILRNAKIDM 93
N Q+DL+KE T IL NAK D+
Sbjct: 431 NKQIDLIKEAATAILHNAKSDI 452
>sp|A7GE89|CARB_CLOBL Carbamoyl-phosphate synthase large chain OS=Clostridium botulinum
(strain Langeland / NCTC 10281 / Type F) GN=carB PE=3
SV=1
Length = 1068
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 26 HTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDETGMIIFTARNDQVDLM 78
H+L K ++T + + +G +V+Q+R + +E+ II T +ND+VDL+
Sbjct: 962 HSLGYKFIATSKTAELLKEEGIEVKQVR----KLKEESPNIIDTIKNDEVDLV 1010
>sp|Q96AH0|SOSB2_HUMAN SOSS complex subunit B2 OS=Homo sapiens GN=NABP1 PE=1 SV=1
Length = 204
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 37 MVLQKGR----GDGTQVRQMRIAECLVGDETGMIIFTARNDQVDLMKEGTTVILRNAKID 92
+VL+ GR DG +VR C V D+TG I + ++ L++ G + L
Sbjct: 26 IVLEIGRVTKTKDGHEVR-----SCKVADKTGSITISVWDEIGGLIQPGDIIRLTRGYAS 80
Query: 93 MFKGSMRLAVDKWGRVE 109
M+KG + L + G ++
Sbjct: 81 MWKGCLTLYTGRGGELQ 97
>sp|C1FNY3|CARB_CLOBJ Carbamoyl-phosphate synthase large chain OS=Clostridium botulinum
(strain Kyoto / Type A2) GN=carB PE=3 SV=1
Length = 1068
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 26 HTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDETGMIIFTARNDQVDLM 78
H+L K ++T + + +G +V+Q+R + +E+ II T +ND+VDL+
Sbjct: 962 HSLGYKFIATSKTAELLKEEGIEVKQVR----KLKEESPNIIDTIKNDEVDLV 1010
>sp|A5D7P8|SOSB2_BOVIN SOSS complex subunit B2 OS=Bos taurus GN=NABP1 PE=2 SV=1
Length = 206
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 37 MVLQKGR----GDGTQVRQMRIAECLVGDETGMIIFTARNDQVDLMKEGTTVILRNAKID 92
+VL+ GR DG +VR C V D+TG I + ++ L++ G + L
Sbjct: 26 IVLEIGRVTKTKDGHEVR-----SCKVADKTGSITISVWDEIGGLIQPGDIIRLTRGYAS 80
Query: 93 MFKGSMRLAVDKWGRVE 109
M+KG + L + G ++
Sbjct: 81 MWKGCLTLYTGRGGELQ 97
>sp|Q8BGW5|SOSB2_MOUSE SOSS complex subunit B2 OS=Mus musculus GN=Nabp1 PE=2 SV=1
Length = 198
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 37 MVLQKGR----GDGTQVRQMRIAECLVGDETGMIIFTARNDQVDLMKEGTTVILRNAKID 92
+VL+ GR DG +VR C V D TG I + ++ L++ G + L
Sbjct: 26 IVLEIGRVTKTKDGHEVR-----SCKVADRTGSITISVWDEIGGLIQTGDIIRLTRGYAS 80
Query: 93 MFKGSMRLAVDKWGRVE 109
M+KG + L + G ++
Sbjct: 81 MWKGCLTLYTGRGGELQ 97
>sp|Q5FVP2|SOSB2_RAT SOSS complex subunit B2 OS=Rattus norvegicus GN=Nabp1 PE=2 SV=1
Length = 198
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 37 MVLQKGR----GDGTQVRQMRIAECLVGDETGMIIFTARNDQVDLMKEGTTVILRNAKID 92
+VL+ GR DG +VR C V D TG I + ++ L++ G + L
Sbjct: 26 IVLEIGRVTKTKDGHEVR-----SCKVADRTGSITISVWDEIGGLIQTGDIIRLTRGYAS 80
Query: 93 MFKGSMRLAVDKWGRVE 109
M+KG + L + G ++
Sbjct: 81 MWKGCLTLYTGRGGELQ 97
>sp|B1KT07|CARB_CLOBM Carbamoyl-phosphate synthase large chain OS=Clostridium botulinum
(strain Loch Maree / Type A3) GN=carB PE=3 SV=1
Length = 1068
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 26 HTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDETGMIIFTARNDQVDLM 78
H++ K ++T + + +G +V+Q+R + +E+ II T +ND+VDL+
Sbjct: 962 HSIGYKFIATSKTAELLKEEGIEVKQVR----KLKEESPNIIDTIKNDEVDLV 1010
>sp|A1B2Q2|RBL_PARDP Ribulose bisphosphate carboxylase large chain OS=Paracoccus
denitrificans (strain Pd 1222) GN=cbbL PE=3 SV=1
Length = 487
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 70 ARNDQVDLMKEGTTVILRNAKIDMFKGSMRLAVDKWGRV 108
ARN+ VDL EG V+ R AK + + A+D WG +
Sbjct: 433 ARNEGVDLKTEGPEVLRRAAK---WCKPLEAALDVWGNI 468
>sp|O14098|CTK1_SCHPO CTD kinase subunit alpha OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=lsk1 PE=1 SV=1
Length = 593
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 9/58 (15%)
Query: 10 KPVFTKVDQLRPGTSG------HTLTVKVVSTKMVLQKGRGDG---TQVRQMRIAECL 58
KP + K+DQ+ GT G +T+T +V+ K + + DG T VR+++I + L
Sbjct: 274 KPAYEKIDQIGEGTYGKVYKAINTVTGDLVALKRIRLEQEKDGFPITTVREVKILQRL 331
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,524,194
Number of Sequences: 539616
Number of extensions: 1705424
Number of successful extensions: 4055
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 4041
Number of HSP's gapped (non-prelim): 22
length of query: 137
length of database: 191,569,459
effective HSP length: 102
effective length of query: 35
effective length of database: 136,528,627
effective search space: 4778501945
effective search space used: 4778501945
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)