Query 032599
Match_columns 137
No_of_seqs 107 out of 448
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 05:07:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032599.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032599hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wjj_A Hypothetical protein F2 100.0 8.8E-43 3E-47 259.2 9.4 131 4-134 7-143 (145)
2 2k75_A Uncharacterized protein 99.9 6.9E-27 2.4E-31 164.8 11.7 96 12-115 2-97 (106)
3 3e0e_A Replication protein A; 99.9 6.8E-26 2.3E-30 157.3 10.2 93 14-111 3-96 (97)
4 1o7i_A SSB, SSO2364, single st 99.9 1.2E-24 4E-29 155.6 14.1 104 13-120 2-105 (119)
5 2kbn_A Conserved protein; nucl 99.9 6.1E-25 2.1E-29 155.4 12.3 102 10-121 2-104 (109)
6 3dm3_A Replication factor A; p 99.9 4E-24 1.4E-28 150.7 11.0 96 12-112 4-101 (105)
7 2k50_A Replication factor A re 99.8 9.3E-19 3.2E-23 123.4 11.2 98 12-113 6-107 (115)
8 1ynx_A Replication factor-A pr 99.7 2.1E-16 7.2E-21 112.0 11.4 99 11-113 2-111 (114)
9 1jmc_A Protein (replication pr 99.6 5.3E-15 1.8E-19 115.5 12.0 100 11-114 6-116 (246)
10 4gop_C Putative uncharacterize 99.4 1.6E-12 5.4E-17 109.9 11.9 97 13-113 3-110 (444)
11 1jmc_A Protein (replication pr 99.3 1.6E-11 5.5E-16 95.7 8.6 98 11-112 124-227 (246)
12 4gop_C Putative uncharacterize 99.2 8.4E-11 2.9E-15 99.3 11.2 99 11-113 119-227 (444)
13 1xjv_A Protection of telomeres 97.9 0.00014 4.9E-09 58.2 10.9 88 9-105 2-95 (294)
14 4gop_B Putative uncharacterize 97.8 0.0002 6.9E-09 51.2 9.2 74 23-113 36-116 (136)
15 3kdf_D Replication protein A 3 97.6 0.00036 1.2E-08 49.6 8.8 75 23-114 31-112 (132)
16 1qzg_A Protection of telomeres 97.6 0.00058 2E-08 52.1 9.7 89 11-105 27-128 (187)
17 2pi2_A Replication protein A 3 97.4 0.0013 4.6E-08 52.1 10.0 73 25-114 73-152 (270)
18 4hik_A Protection of telomeres 97.2 0.00038 1.3E-08 51.0 5.0 93 10-105 2-111 (143)
19 1xjv_A Protection of telomeres 97.2 0.00022 7.4E-09 57.1 3.7 90 11-104 143-262 (294)
20 1jb7_A Telomere-binding protei 96.8 0.0069 2.4E-07 52.1 10.0 91 8-105 33-141 (495)
21 3kf6_A Protein STN1; OB fold, 96.2 0.021 7.2E-07 42.2 7.8 71 24-108 48-126 (159)
22 3m4p_A Ehasnrs, asparaginyl-tR 93.8 0.51 1.7E-05 40.0 10.3 96 4-111 10-122 (456)
23 1jb7_A Telomere-binding protei 93.8 0.37 1.3E-05 41.4 9.5 88 9-109 207-297 (495)
24 1txy_A Primosomal replication 91.6 1.2 4.2E-05 29.9 8.0 63 23-92 2-80 (104)
25 3f2b_A DNA-directed DNA polyme 90.2 1.7 5.8E-05 40.6 9.9 86 11-104 5-97 (1041)
26 3rn5_A Interferon-inducible pr 89.8 2.2 7.6E-05 32.7 8.6 77 28-112 15-92 (208)
27 3rlo_A Gamma-interferon-induci 89.3 3.7 0.00013 31.4 9.5 76 28-112 12-88 (204)
28 3rn5_A Interferon-inducible pr 89.3 3 0.0001 32.0 9.0 87 14-111 111-198 (208)
29 4gs3_A Single-stranded DNA-bin 88.4 2.9 0.0001 28.7 7.8 60 24-90 12-78 (107)
30 3nem_A Aspartyl-tRNA synthetas 87.7 3 0.0001 35.0 9.0 85 15-112 6-102 (438)
31 3koj_A Uncharacterized protein 87.6 1.2 4E-05 30.6 5.4 64 22-91 10-84 (108)
32 2oq0_A Gamma-interferon-induci 87.4 8.2 0.00028 29.5 10.4 87 14-111 115-202 (206)
33 2xvs_A Tetratricopeptide repea 86.7 3.3 0.00011 30.7 7.7 75 9-94 59-136 (166)
34 3au7_A TIAS, putative uncharac 85.8 3 0.0001 35.0 7.9 79 14-109 276-360 (402)
35 1n9w_A Aspartyl-tRNA synthetas 85.6 6.1 0.00021 32.9 9.8 81 15-111 4-88 (422)
36 1nnx_A Protein YGIW; structura 84.7 3.6 0.00012 28.4 6.7 73 15-104 27-103 (109)
37 1e1o_A Lysyl-tRNA synthetase, 84.4 5.6 0.00019 34.0 9.1 75 24-111 65-148 (504)
38 3i7f_A Aspartyl-tRNA synthetas 84.3 6 0.00021 34.3 9.4 89 10-111 47-153 (548)
39 1eov_A ASPRS, aspartyl-tRNA sy 84.0 5.7 0.00019 33.7 9.0 90 10-111 20-130 (487)
40 2v31_A Ubiquitin-activating en 83.1 1.7 5.7E-05 30.2 4.4 61 60-127 26-86 (112)
41 3en2_A Probable primosomal rep 81.9 9.6 0.00033 25.7 8.2 73 23-102 2-91 (101)
42 1gm5_A RECG; helicase, replica 81.6 0.96 3.3E-05 40.6 3.4 72 11-92 154-229 (780)
43 2xgt_A Asparaginyl-tRNA synthe 81.6 7.4 0.00025 32.5 8.7 84 15-110 2-96 (435)
44 3rlo_A Gamma-interferon-induci 81.5 8 0.00027 29.5 8.0 87 14-111 107-195 (204)
45 3bju_A Lysyl-tRNA synthetase; 81.3 7.2 0.00025 33.5 8.6 76 24-111 56-141 (521)
46 1z9f_A Single-strand binding p 81.2 2.2 7.6E-05 30.8 4.7 65 20-91 13-94 (153)
47 1wyd_A Hypothetical aspartyl-t 81.0 7.8 0.00027 32.3 8.6 83 16-111 7-98 (429)
48 3k8a_A Putative primosomal rep 80.9 10 0.00035 25.4 8.2 73 24-103 8-96 (103)
49 3u4v_A Telomerase-associated p 80.5 11 0.00037 25.4 8.4 81 15-102 17-103 (117)
50 3fhw_A Primosomal replication 80.3 4.4 0.00015 28.1 5.8 75 23-104 1-92 (115)
51 3vdy_A SSB, single-stranded DN 79.6 3 0.0001 28.3 4.7 64 22-92 4-82 (116)
52 1qvc_A Single stranded DNA bin 79.0 1.9 6.6E-05 30.7 3.7 63 23-92 5-85 (145)
53 3u58_A Tetrahymena TEB1 AB; te 78.1 11 0.00037 27.7 7.5 87 8-102 7-99 (213)
54 1x54_A Asparaginyl-tRNA synthe 77.1 7.7 0.00026 32.4 7.4 84 15-111 6-101 (434)
55 2vw9_A Single-stranded DNA bin 76.5 3.6 0.00012 28.8 4.5 63 23-92 2-81 (134)
56 4ex5_A Lysine--tRNA ligase; st 76.0 9.7 0.00033 32.8 7.9 75 24-111 87-169 (529)
57 2oq0_A Gamma-interferon-induci 75.9 24 0.00083 26.9 10.1 77 28-112 18-96 (206)
58 1l0w_A Aspartyl-tRNA synthetas 75.7 11 0.00038 32.7 8.2 90 16-118 7-110 (580)
59 1v1q_A Primosomal replication 75.1 12 0.00043 26.4 7.1 62 24-92 20-97 (134)
60 3afp_A Single-stranded DNA-bin 74.8 3.9 0.00013 29.9 4.4 63 22-91 3-84 (168)
61 3a74_A Lysyl-tRNA synthetase; 74.8 8.1 0.00028 32.9 7.0 75 24-111 57-139 (493)
62 3ulp_A Single-strand binding p 73.4 3 0.0001 28.7 3.3 62 23-91 6-86 (124)
63 1l1o_C Replication protein A 7 72.5 1.2 4.3E-05 32.8 1.2 25 52-76 78-102 (181)
64 3k7u_C MP18 RNA editing comple 68.7 15 0.00052 26.3 6.4 61 22-91 5-84 (148)
65 4dam_A Single-stranded DNA-bin 68.7 6.9 0.00024 27.3 4.4 61 23-91 15-94 (128)
66 2fxq_A Single-strand binding p 68.3 6.1 0.00021 30.6 4.4 63 22-91 127-202 (264)
67 3eiv_A Single-stranded DNA-bin 68.3 7.2 0.00025 29.5 4.7 62 23-91 4-84 (199)
68 3tqy_A Single-stranded DNA-bin 67.9 4.2 0.00014 29.4 3.2 64 22-92 7-88 (158)
69 3ull_A DNA binding protein; DN 67.8 4.4 0.00015 28.2 3.2 64 22-92 13-100 (132)
70 3u50_C Telomerase-associated p 67.3 1.4 4.7E-05 32.8 0.5 25 52-76 74-98 (172)
71 1c0a_A Aspartyl tRNA synthetas 66.8 18 0.00063 31.3 7.6 84 16-112 6-106 (585)
72 1se8_A Single-strand binding p 65.4 7.3 0.00025 31.0 4.4 67 22-95 128-211 (301)
73 2hpi_A DNA polymerase III alph 64.0 3.9 0.00013 38.8 3.0 70 24-103 1043-1116(1220)
74 3ebe_A Protein MCM10 homolog; 63.9 11 0.00039 28.4 5.0 95 11-112 36-146 (200)
75 3lgj_A Single-stranded DNA-bin 61.2 8.4 0.00029 28.2 3.8 84 22-112 22-133 (169)
76 1eqq_A Single stranded DNA bin 58.6 2.4 8.2E-05 31.4 0.4 62 23-91 6-85 (178)
77 1miu_A BRCA2, breast cancer ty 57.6 33 0.0011 30.9 7.6 82 19-112 607-691 (738)
78 1miu_A BRCA2, breast cancer ty 57.4 4.8 0.00016 36.3 2.2 49 64-112 525-581 (738)
79 3pgz_A Single-stranded DNA-bin 55.3 11 0.00037 28.4 3.6 84 22-112 25-136 (193)
80 2vl6_A SSO MCM N-TER, minichro 54.4 15 0.00052 28.2 4.4 31 65-95 212-242 (268)
81 2fxq_A Single-strand binding p 53.1 17 0.00058 28.0 4.5 62 23-91 5-83 (264)
82 3kf8_A Protein STN1; OB fold; 52.7 71 0.0024 24.5 7.9 81 23-109 85-183 (220)
83 4abn_A Tetratricopeptide repea 50.3 61 0.0021 26.1 7.7 70 13-93 355-427 (474)
84 1ltl_A DNA replication initiat 46.0 20 0.00068 27.8 3.9 30 65-94 199-228 (279)
85 3e0j_A DNA polymerase subunit 44.3 49 0.0017 28.1 6.3 41 56-99 139-179 (476)
86 2k14_A YUAF protein; NFED-like 40.0 13 0.00044 23.7 1.6 38 52-89 25-71 (84)
87 1qp2_A Protein (PSAE protein); 38.2 36 0.0012 21.7 3.4 57 77-133 1-62 (70)
88 3cp0_A Membrane protein implic 36.7 26 0.0009 22.0 2.7 38 51-89 28-71 (82)
89 1se8_A Single-strand binding p 35.8 32 0.0011 27.2 3.7 62 23-91 5-84 (301)
90 4dni_A Fusion protein of RNA-e 34.9 57 0.002 25.4 4.9 70 13-91 131-224 (257)
91 3k81_C MP18 RNA editing comple 29.4 48 0.0016 24.3 3.4 67 16-91 15-100 (164)
92 2k52_A Uncharacterized protein 28.6 72 0.0025 19.6 3.8 28 76-103 44-71 (80)
93 4ah6_A Aspartate--tRNA ligase, 28.4 66 0.0023 28.2 4.7 61 57-117 42-119 (617)
94 4a1k_A Putative L, D-transpept 28.1 7.5 0.00026 28.1 -1.2 26 62-87 137-164 (165)
95 3mxn_B RECQ-mediated genome in 26.2 1.2E+02 0.0042 21.9 5.0 36 57-92 75-113 (150)
96 1sr3_A APO-CCME; OB fold, beta 26.1 1.7E+02 0.0059 20.6 7.1 59 24-91 29-87 (136)
97 1vky_A S-adenosylmethionine:tR 24.9 85 0.0029 25.7 4.4 34 58-91 41-75 (347)
98 3tur_A Mycobacteria tuberculos 24.7 13 0.00044 29.6 -0.5 28 62-89 230-259 (287)
99 1wi5_A RRP5 protein homolog; S 24.5 1.5E+02 0.0053 19.4 5.5 74 14-103 14-93 (119)
100 2yma_A YOS9P, protein OS-9 hom 24.2 1E+02 0.0034 22.6 4.3 47 78-124 79-129 (161)
101 2j5u_A MREC protein; bacterial 23.7 2.4E+02 0.0083 21.4 7.6 77 54-134 145-226 (255)
102 2do3_A Transcription elongatio 23.6 1.4E+02 0.0049 18.7 5.2 16 74-89 14-29 (69)
103 3lwc_A Uncharacterized protein 23.5 39 0.0013 22.6 1.9 27 64-91 68-94 (119)
104 2qf4_A Cell shape determining 23.1 2.1E+02 0.0071 20.4 8.6 76 54-133 84-164 (172)
105 3f9v_A Minichromosome maintena 20.6 78 0.0027 27.1 3.6 31 65-95 206-236 (595)
106 2e6z_A Transcription elongatio 20.3 23 0.00078 21.3 0.1 19 77-95 7-25 (59)
No 1
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=100.00 E-value=8.8e-43 Score=259.25 Aligned_cols=131 Identities=64% Similarity=1.004 Sum_probs=123.9
Q ss_pred cCCCCCCCeeeeeccCCCCCCCceEEEEEEEcceee---eeccCCCcc---ccceeEEEEEEeeCcceEEEEEecCCcCC
Q 032599 4 SKSGLRKPVFTKVDQLRPGTSGHTLTVKVVSTKMVL---QKGRGDGTQ---VRQMRIAECLVGDETGMIIFTARNDQVDL 77 (137)
Q Consensus 4 ~~~~l~~~~~~kI~dL~p~~~~v~l~~kVl~~~~~~---~~~R~DGs~---~~~~~v~~~~VgDeTG~I~ltlW~~~~~~ 77 (137)
.++++++|.|+||+||+|++++++++||||++++++ ++.|+||++ .+.++|++++|||+||+|+||+|+++++.
T Consensus 7 ~~~~~~kp~~~kI~dL~pg~~~v~l~~kVl~~~~v~~~~~~~R~dG~~~~~~r~~~V~~~lVgDeTG~I~ftlW~e~~~~ 86 (145)
T 1wjj_A 7 GSTVKRKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDETGCILFTARNDQVDL 86 (145)
T ss_dssp CCCCCCCCSSCCSTTCCTTCCCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEECSSCEEEEEECTTHHHH
T ss_pred CCccccCccceEHHHcCCCCCceEEEEEEEEcccccccccccccCCccccccCCceEEEEEEEcCCcEEEEEEecCCcCc
Confidence 467899999999999999999999999999999988 788999961 23589999999999999999999999999
Q ss_pred CCCCCEEEEeceEEcccCCeEEEEeCCcEeEEEcCCCceEEcCCCCccccceeeeee
Q 032599 78 MKEGTTVILRNAKIDMFKGSMRLAVDKWGRVEVAEPANFTVKEDNNLSLIEYELVNV 134 (137)
Q Consensus 78 i~~Gd~v~I~na~~~~~~g~~~L~vg~~g~I~~~~~~~~~vn~~~n~S~~eye~~~~ 134 (137)
+++||+|+|+|||+++|+|+++|++|+||+|+++++++|+||+++|||++|||++++
T Consensus 87 l~~Gd~v~i~na~v~~~~G~~~L~vgk~g~Ie~~~e~~~~v~e~~n~S~~e~e~~~~ 143 (145)
T 1wjj_A 87 MKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKEDNNLSLVEYESGPS 143 (145)
T ss_dssp TCTTCEEEEEEEEEEEETTEEEEEECTTCCBCCCSCCCSCCCTTSBTTTSCCSSCCS
T ss_pred CCCCCEEEEeccEEEeECCEEEEEECCCEEEEECCCCcEEEecCCCcCcceEEEeec
Confidence 999999999999999999999999999999999999999999999999999999987
No 2
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=99.94 E-value=6.9e-27 Score=164.82 Aligned_cols=96 Identities=20% Similarity=0.280 Sum_probs=88.0
Q ss_pred eeeeeccCCCCCCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEeeCcceEEEEEecCCcCCCCCCCEEEEeceEE
Q 032599 12 VFTKVDQLRPGTSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDETGMIIFTARNDQVDLMKEGTTVILRNAKI 91 (137)
Q Consensus 12 ~~~kI~dL~p~~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgDeTG~I~ltlW~~~~~~i~~Gd~v~I~na~~ 91 (137)
.++||+||+|++++++++++|+++++++ . ++||+ .+++++++|||+||+|+|++|+++ +++||+|+|+||++
T Consensus 2 ~~~kI~dl~pg~~~v~v~~~V~~~~~~~-~-~k~G~---~~~v~~~~l~DeTG~I~~tlW~~~---l~~Gdvv~i~ng~v 73 (106)
T 2k75_A 2 DLVKIRDVSLSTPYVSVIGKITGIHKKE-Y-ESDGT---TKSVYQGYIEDDTARIRISSFGKQ---LQDSDVVRIDNARV 73 (106)
T ss_dssp CBCCSTTCCTTCSEEEEEEEEEEEEEEE-E-EETTE---EEEEEEEEEECSSCEEEEEEESSC---CCTTEEEEEEEEEE
T ss_pred CcEEHHHcCCCCceEEEEEEEEEccccc-c-ccCCC---eeEEEEEEEEcCCCeEEEEEEcCc---cCCCCEEEEEeeEE
Confidence 4789999999999999999999999987 3 34775 378999999999999999999987 99999999999999
Q ss_pred cccCCeEEEEeCCcEeEEEcCCCc
Q 032599 92 DMFKGSMRLAVDKWGRVEVAEPAN 115 (137)
Q Consensus 92 ~~~~g~~~L~vg~~g~I~~~~~~~ 115 (137)
++|+|+++|+++++|.|++++++.
T Consensus 74 ~~~~g~~~L~v~~~~~I~~~~~~~ 97 (106)
T 2k75_A 74 AQFNGYLSLSVGDSSRIESVNVNI 97 (106)
T ss_dssp EEETTEEEEEECTTSEEEECCSCC
T ss_pred eEECCEEEEEECCcEEEEECCCCC
Confidence 999999999999999999997654
No 3
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=99.93 E-value=6.8e-26 Score=157.27 Aligned_cols=93 Identities=25% Similarity=0.342 Sum_probs=82.0
Q ss_pred eeeccCCCCCCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEeeCcceEEEEEecCCcCC-CCCCCEEEEeceEEc
Q 032599 14 TKVDQLRPGTSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDETGMIIFTARNDQVDL-MKEGTTVILRNAKID 92 (137)
Q Consensus 14 ~kI~dL~p~~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgDeTG~I~ltlW~~~~~~-i~~Gd~v~I~na~~~ 92 (137)
.||+||+|+ .+++++++|++++++++|.|+||++ ++++++.|+|+||+|++++|+++++. +++||+|+| +|+++
T Consensus 3 ~kI~dl~~g-~~v~i~~~V~~~~~~r~~~~~~G~~---~~v~~~~l~DeTG~I~~tlW~~~~~~~i~~Gdvv~i-~g~v~ 77 (97)
T 3e0e_A 3 YKISELMPN-LSGTINAEVVTAYPKKEFSRKDGTK---GQLKSLFLKDDTGSIRGTLWNELADFEVKKGDIAEV-SGYVK 77 (97)
T ss_dssp ECGGGCCTT-EEEEEEEEEEEECCCEEEC----CC---EEEEEEEEEETTEEEEEEEEGGGGGCCCCTTCEEEE-EEEEE
T ss_pred eEHHHCCCC-CcEEEEEEEEECCCceEEEcCCCCe---eEEEEEEEECCCCcEEEEEECCccccccCCCCEEEE-EEEEE
Confidence 589999999 7899999999999999999999974 89999999999999999999999885 999999999 89999
Q ss_pred ccCCeEEEEeCCcEeEEEc
Q 032599 93 MFKGSMRLAVDKWGRVEVA 111 (137)
Q Consensus 93 ~~~g~~~L~vg~~g~I~~~ 111 (137)
++.++++|++|++|.|++.
T Consensus 78 ~~~~~~el~~g~~~~i~k~ 96 (97)
T 3e0e_A 78 QGYSGLEISVDNIGIIEKS 96 (97)
T ss_dssp EC--CEEEEEEEEEEEECC
T ss_pred EcCCeEEEEECCCcEEEEC
Confidence 9999999999999999864
No 4
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=99.92 E-value=1.2e-24 Score=155.56 Aligned_cols=104 Identities=29% Similarity=0.411 Sum_probs=96.2
Q ss_pred eeeeccCCCCCCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEeeCcceEEEEEecCCcCCCCCCCEEEEeceEEc
Q 032599 13 FTKVDQLRPGTSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDETGMIIFTARNDQVDLMKEGTTVILRNAKID 92 (137)
Q Consensus 13 ~~kI~dL~p~~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgDeTG~I~ltlW~~~~~~i~~Gd~v~I~na~~~ 92 (137)
|++|+||+|++.++++.++|+++++++++.+++|+ +.+++++|+|+||+|++++|+++++.+++|++|+|+||+++
T Consensus 2 f~~I~dL~~~~~~v~~~~~V~~~~~~~~~~~k~G~----~~~~~~~l~D~TG~I~~tlW~~~~~~~~~G~vv~i~~g~v~ 77 (119)
T 1o7i_A 2 EEKVGNLKPNMESVNVTVRVLEASEARQIQTKNGV----RTISEAIVGDETGRVKLTLWGKHAGSIKEGQVVKIENAWTT 77 (119)
T ss_dssp BCCGGGCCTTCSSEEEEEEEEEECCCEEECCTTCC----EEEEEEEEEETTEEEEEEEEGGGTTCCCTTCEEEEEEEEEE
T ss_pred cEEHHHCcCCCCcEEEEEEEEECCCCeeEEecCCC----EEEEEEEEEeCCCEEEEEEECChhhcCCCCCEEEEEeEEEE
Confidence 78899999999899999999999998888778873 68999999999999999999998888999999999999999
Q ss_pred ccCCeEEEEeCCcEeEEEcCCCceEEcC
Q 032599 93 MFKGSMRLAVDKWGRVEVAEPANFTVKE 120 (137)
Q Consensus 93 ~~~g~~~L~vg~~g~I~~~~~~~~~vn~ 120 (137)
+|+|+++|+++++|.|+..++++|..-+
T Consensus 78 ~~~g~~qL~i~~~~~i~~~~~~~~~~~~ 105 (119)
T 1o7i_A 78 AFKGQVQLNAGSKTKIAEASEDGFPESS 105 (119)
T ss_dssp EETTEEEEEECTTCEEEECCCTTCCCGG
T ss_pred EeCCEEEEEECCCEEEEEcCCcCCCcHH
Confidence 9999999999999999999888876433
No 5
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=99.92 E-value=6.1e-25 Score=155.42 Aligned_cols=102 Identities=23% Similarity=0.296 Sum_probs=89.5
Q ss_pred CCeeeeeccCCCCCCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEeeCcceEEEEEec-CCcCCCCCCCEEEEec
Q 032599 10 KPVFTKVDQLRPGTSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDETGMIIFTARN-DQVDLMKEGTTVILRN 88 (137)
Q Consensus 10 ~~~~~kI~dL~p~~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgDeTG~I~ltlW~-~~~~~i~~Gd~v~I~n 88 (137)
.+.+.||+||+|+..+++++++|+++++++ .| .....++|||+||+|+|++|+ ++++.+++|++|+|+|
T Consensus 2 ~~~~~kI~dl~~~~~~v~v~~~V~~~~~~~-----~~-----~~~~~~~l~DeTG~I~~t~W~~~~~~~~~~G~~V~i~n 71 (109)
T 2kbn_A 2 EPQLTKIVDIVENGQWANLKAKVIQLWENT-----HE-----SISQVGLLGDETGIIKFTIWKNAELPLLEQGESYLLRS 71 (109)
T ss_dssp CCCBCCTTTCCSTTCEEEEEEEEEEEEECC-----CS-----SEEEEEEEECTTCCEEEEEEGGGCCCCCCTTCEEEEEE
T ss_pred CCCceEHHHCCCCCCcEEEEEEEEEeEcCC-----CC-----eEEEEEEEECCCCeEEEEEECcccccccCCCCEEEEEE
Confidence 356889999999999999999999999853 23 355679999999999999999 7888899999999999
Q ss_pred eEEcccCCeEEEEeCCcEeEEEcCCCceEEcCC
Q 032599 89 AKIDMFKGSMRLAVDKWGRVEVAEPANFTVKED 121 (137)
Q Consensus 89 a~~~~~~g~~~L~vg~~g~I~~~~~~~~~vn~~ 121 (137)
|++++|+|+++|++++++.|+..+++...+.+.
T Consensus 72 ~~v~~~~G~~~L~v~~~~~I~~~~~~~~~~~~~ 104 (109)
T 2kbn_A 72 VVVGEYNDRFQVQVNKNSSIEKLSEPIEVGLEH 104 (109)
T ss_dssp EEEEEETTEEEEEECSSSEEEECSSCCCCCCSS
T ss_pred EEEEEECCEEEEEECCceEEEECCCcccccccc
Confidence 999999999999999999999998776555554
No 6
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=99.91 E-value=4e-24 Score=150.65 Aligned_cols=96 Identities=23% Similarity=0.254 Sum_probs=89.7
Q ss_pred eeeeeccCCCCCCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEeeCcceEEEEEecCCcC-CCCCCCEEEEeceE
Q 032599 12 VFTKVDQLRPGTSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDETGMIIFTARNDQVD-LMKEGTTVILRNAK 90 (137)
Q Consensus 12 ~~~kI~dL~p~~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgDeTG~I~ltlW~~~~~-~i~~Gd~v~I~na~ 90 (137)
.+++|+||.|+ .++++.|+|++++++++|.|+||+. ++++++.|+|+||+|++|||+++++ .+++||+|.| +||
T Consensus 4 ~~~~I~dL~~~-~~v~v~g~V~~~~~~r~~~~~~G~~---~~v~~~~l~D~TG~IrvtlW~~~a~~~l~~Gdvv~i-~g~ 78 (105)
T 3dm3_A 4 DTYNIGELSPG-MTATFEGEVISALPIKEFKRADGSI---GKLKSFIVRDETGSIRVTLWDNLTDIDVGRGDYVRV-RGY 78 (105)
T ss_dssp CEECGGGCCSS-EEEEEEEEEEEEEEEEEEECTTSCE---EEEEEEEEEETTEEEEEEEEGGGGGSCCCTTCEEEE-EEE
T ss_pred cceEHHHCCCC-CeEEEEEEEEECCCceEEEcCCCCe---eEEEEEEEECCCCcEEEEEECcccccccCCCCEEEE-EEE
Confidence 58899999999 7899999999999999999999974 9999999999999999999999888 5999999999 999
Q ss_pred Eccc-CCeEEEEeCCcEeEEEcC
Q 032599 91 IDMF-KGSMRLAVDKWGRVEVAE 112 (137)
Q Consensus 91 ~~~~-~g~~~L~vg~~g~I~~~~ 112 (137)
++++ +|.++|++|+.|.|++.+
T Consensus 79 vk~~~~g~~eL~~g~~~~i~~~~ 101 (105)
T 3dm3_A 79 IREGYYGGLECTANYVEILKKGE 101 (105)
T ss_dssp EEECTTSSEEEEEEEEEEEECCC
T ss_pred EEEccCCCEEEEeCCceEEEecc
Confidence 9997 569999999999999885
No 7
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=99.79 E-value=9.3e-19 Score=123.38 Aligned_cols=98 Identities=18% Similarity=0.332 Sum_probs=87.3
Q ss_pred eeeeeccCCCCCCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEeeCcceEEEEEecCCcC---CCCCCCEEEEec
Q 032599 12 VFTKVDQLRPGTSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDETGMIIFTARNDQVD---LMKEGTTVILRN 88 (137)
Q Consensus 12 ~~~kI~dL~p~~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgDeTG~I~ltlW~~~~~---~i~~Gd~v~I~n 88 (137)
.+++|++|.|+.. +++.++|+++++++++.+++|+. ..++++.|+|+||+|++++|++.+. .+++|++|.|.|
T Consensus 6 ~~~~I~~L~~g~~-v~i~~~V~~~~~~~~~~~k~G~~---~~~~~~~l~D~TG~I~~t~w~~~~~~~~~l~~G~vv~i~g 81 (115)
T 2k50_A 6 RMDTISKLEEGAE-TPVTGRVMKISSPRTFTTRKGRE---GKLANVIIADDTGELRAVFWTENIKLLKKFREGDVIRIKD 81 (115)
T ss_dssp CCCCTTTCCTTCE-EEEEEEEEEECCCEECCCTTSSC---CEEEEEEEEETTEEEEEEEETTGGGGGGTCCTTSEEEEEE
T ss_pred ceEEHHHCCCCCE-eEEEEEEEECCCceEEEcCCCCE---EEEEEEEEEeCCCeEEEEEeCchhhhhhcCCCCCEEEEEe
Confidence 4678999999865 69999999999999887777753 7899999999999999999997654 689999999999
Q ss_pred eEEcc-cCCeEEEEeCCcEeEEEcCC
Q 032599 89 AKIDM-FKGSMRLAVDKWGRVEVAEP 113 (137)
Q Consensus 89 a~~~~-~~g~~~L~vg~~g~I~~~~~ 113 (137)
++++. |+|.++|++++++.|+..++
T Consensus 82 ~~v~~~f~g~~qL~~~~~~~i~~~~~ 107 (115)
T 2k50_A 82 VNIRGGFGGRKEAHLMPRSTVEVLDP 107 (115)
T ss_dssp EEECCCSSSSCEEEECTTCCEEEESS
T ss_pred eEEccccCCeEEEEECCCceEEECCc
Confidence 99987 99999999999999998863
No 8
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=2.1e-16 Score=111.98 Aligned_cols=99 Identities=21% Similarity=0.202 Sum_probs=88.4
Q ss_pred CeeeeeccCCCCCCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEeeCcceEEEEEecCCcCC----CCCCCEEEE
Q 032599 11 PVFTKVDQLRPGTSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDETGMIIFTARNDQVDL----MKEGTTVIL 86 (137)
Q Consensus 11 ~~~~kI~dL~p~~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgDeTG~I~ltlW~~~~~~----i~~Gd~v~I 86 (137)
..+++|++|.|++.+.+|+|||+.++++++|.+.+| .+++.++.++|++|.|+.++|+++++. |++|+++.|
T Consensus 2 ~~~~~Is~L~p~~~~w~I~~rV~~k~~~r~~~~~~~----~g~~~~~~L~De~G~I~at~~~~~~~~f~~~l~eG~vy~I 77 (114)
T 1ynx_A 2 RPIFAIEQLSPYQNVWTIKARVSYKGEIKTWHNQRG----DGKLFNVNFLDTSGEIRATAFNDFATKFNEILQEGKVYYV 77 (114)
T ss_dssp CCBCCGGGCCTTTCCCEEEEEEEEEEEEEEEECSSC----EEEEEEEEEEETTEEEEEEECHHHHHHHHHHSCSSSEEEE
T ss_pred CceEEHHHCCCCCCceEEEEEEEEeccceEEecCCC----CceEEEEEEECCCCeEEEEECHHHHHHHHhhcccCcEEEE
Confidence 357899999999999999999999999999987776 489999999999999999999987654 799999999
Q ss_pred eceEEcc----c---CCeEEEEeCCcEeEEEcCC
Q 032599 87 RNAKIDM----F---KGSMRLAVDKWGRVEVAEP 113 (137)
Q Consensus 87 ~na~~~~----~---~g~~~L~vg~~g~I~~~~~ 113 (137)
.++.++. | ....+|.+++++.|++.++
T Consensus 78 s~~~V~~a~~~y~~~~~~yei~f~~~T~I~~~~d 111 (114)
T 1ynx_A 78 SKAKLQPAKPQFTNLTHPYELNLDRDTVIEECFD 111 (114)
T ss_dssp ESCEEEECCTTTSSSSSCEEEEECSSCEEEESCC
T ss_pred CCcEEEECCCCcccCCCCEEEEECCCCEEEECCC
Confidence 9999977 2 4678999999999998864
No 9
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=99.61 E-value=5.3e-15 Score=115.53 Aligned_cols=100 Identities=19% Similarity=0.225 Sum_probs=89.1
Q ss_pred CeeeeeccCCCCCCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEeeCcceEEEEEecCCc----CCCCCCCEEEE
Q 032599 11 PVFTKVDQLRPGTSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDETGMIIFTARNDQV----DLMKEGTTVIL 86 (137)
Q Consensus 11 ~~~~kI~dL~p~~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgDeTG~I~ltlW~~~~----~~i~~Gd~v~I 86 (137)
+.+.+|++|.|++.+.+|+|||+.+++++.|.+.+| .+++.+++++|++|.|++++|++++ +.+++|+++.|
T Consensus 6 ~~~~~I~~L~p~~~~w~I~~rV~~k~~~r~~~~~~~----~g~~~~~~L~De~G~I~at~~~~~~~~~~~~l~~G~vy~i 81 (246)
T 1jmc_A 6 SKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRG----EGKLFSLELVDESGEIRATAFNEQVDKFFPLIEVNKVYYF 81 (246)
T ss_dssp -CBCCGGGCCTTCCCCEEEEEEEEECCCEEEECSSC----EEEEEEEEEECSSCEEEEEEEHHHHHHHGGGCCTTCEEEE
T ss_pred cceEEHHHCCCCCCceEEEEEEEEecccceeeCCCC----CceEEEEEEECCCCeEEEEEChHHHHHhhhhcccCCEEEE
Confidence 578899999999999999999999999999987666 4899999999999999999999765 55899999999
Q ss_pred eceEEccc-------CCeEEEEeCCcEeEEEcCCC
Q 032599 87 RNAKIDMF-------KGSMRLAVDKWGRVEVAEPA 114 (137)
Q Consensus 87 ~na~~~~~-------~g~~~L~vg~~g~I~~~~~~ 114 (137)
.|+.++.. .+..+|.++.++.|++.++.
T Consensus 82 ~~~~v~~~~~~y~~~~~~~ei~~~~~T~I~~~~~~ 116 (246)
T 1jmc_A 82 SKGTLKIANKQFTAVKNDYEMTFNNETSVMPCEDD 116 (246)
T ss_dssp ECCEEEECCGGGCCCCCSEEEECCTTCEEEECCSC
T ss_pred CCCEEEEcccCcccCCCCEEEEEcCCcEEEEccCc
Confidence 99999875 57899999999999998643
No 10
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=99.41 E-value=1.6e-12 Score=109.85 Aligned_cols=97 Identities=19% Similarity=0.292 Sum_probs=86.8
Q ss_pred eeeeccCCCCCCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEeeCcceEEEEEecCCc----CCCCCCCEEEEec
Q 032599 13 FTKVDQLRPGTSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDETGMIIFTARNDQV----DLMKEGTTVILRN 88 (137)
Q Consensus 13 ~~kI~dL~p~~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgDeTG~I~ltlW~~~~----~~i~~Gd~v~I~n 88 (137)
+.+|++|.|++.+..|+|||+.+++.+.|.+.+| .+++.++.++|++|.|+.++|++++ +.|++|+++.|.|
T Consensus 3 ~~~I~~L~p~~~~w~I~~rV~~k~~ir~~~~~~~----~g~~~~~~L~De~G~I~at~~~~~~~~f~~~l~eG~vy~Is~ 78 (444)
T 4gop_C 3 IYPIEGLSPYQNRWTIKARVTSKSDIRHWSNQRG----EGKLFSVNLLDDSGEIKATGFNDAVDRFYPLLQENHVYLISK 78 (444)
T ss_dssp CCCSTTCCTTCCSCEEEEECCEECCCEEEECSSC----EEEEEEEEEECSSCEEEEEEETHHHHHHTTTCCTTCEEEEES
T ss_pred ceeHHHCCCCCcceEEEEEEEEccCcceecCCCC----CceEEEEEEEcCCCEEEEEEeHHHHHHHHHheecCCEEEEcC
Confidence 6789999999999999999999999999987766 3799999999999999999999754 5689999999999
Q ss_pred eEEcccC-------CeEEEEeCCcEeEEEcCC
Q 032599 89 AKIDMFK-------GSMRLAVDKWGRVEVAEP 113 (137)
Q Consensus 89 a~~~~~~-------g~~~L~vg~~g~I~~~~~ 113 (137)
+.++..+ ...+|.++.++.|++.++
T Consensus 79 ~~V~~~~~~y~~~~~~~ei~~~~~T~V~~~~d 110 (444)
T 4gop_C 79 ARVNIAKKQFSNLQNEYEITFENSTEIEECTD 110 (444)
T ss_dssp CEEEECCGGGCSCCCSEEEEECTTCEEEECSC
T ss_pred CEEEecCCccccCCCCEEEEEcCCcEEEEccC
Confidence 9997654 468999999999999864
No 11
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=99.26 E-value=1.6e-11 Score=95.69 Aligned_cols=98 Identities=14% Similarity=0.111 Sum_probs=82.2
Q ss_pred CeeeeeccCCC--CCCCceEEEEEEEcceeeeeccC-CCccccceeEEEEEEeeCcc-eEEEEEecCCcCC--CCCCCEE
Q 032599 11 PVFTKVDQLRP--GTSGHTLTVKVVSTKMVLQKGRG-DGTQVRQMRIAECLVGDETG-MIIFTARNDQVDL--MKEGTTV 84 (137)
Q Consensus 11 ~~~~kI~dL~p--~~~~v~l~~kVl~~~~~~~~~R~-DGs~~~~~~v~~~~VgDeTG-~I~ltlW~~~~~~--i~~Gd~v 84 (137)
-.|++|++|.. ....+++.|.|+++++++++.++ +|+ ....+++.|.|+|| +|+++||++++.. ..+|+++
T Consensus 124 ~~f~~i~~i~~~~~~~~vDViG~V~~v~~~~~~~~k~~g~---~~~~r~~~l~D~sg~~i~~tLWg~~a~~~~~~~~~vv 200 (246)
T 1jmc_A 124 FDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNR---EVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVL 200 (246)
T ss_dssp CCBCCGGGGGGSCTTCEEEEEEEEEEECCCEEEEETTTTE---EEEEEEEEEECTTCCEEEEEEEHHHHHHCCCTTCCEE
T ss_pred eeeEEHHHHhcccCCCceeEEEEEEEecCeEEEEEecCCC---ccEEEEEEEECCCCCEEEEEEEchhhhhcccCCCCEE
Confidence 45788888864 23458999999999999988765 675 48899999999999 5999999987764 4789999
Q ss_pred EEeceEEcccCCeEEEEeCCcEeEEEcC
Q 032599 85 ILRNAKIDMFKGSMRLAVDKWGRVEVAE 112 (137)
Q Consensus 85 ~I~na~~~~~~g~~~L~vg~~g~I~~~~ 112 (137)
.|.+++++.|+ .++|+++..++|...|
T Consensus 201 ~i~~~~v~~f~-g~~ls~~~~s~i~inp 227 (246)
T 1jmc_A 201 AIKGARVSDFG-GRSLSVLSSSTIIANP 227 (246)
T ss_dssp EEEEEEEECTT-SSEEECCSSCEEESSC
T ss_pred EEEEEEEEecC-CeEEEecCcceEEECC
Confidence 99999999995 5899999999997443
No 12
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=99.21 E-value=8.4e-11 Score=99.29 Aligned_cols=99 Identities=11% Similarity=0.124 Sum_probs=85.0
Q ss_pred CeeeeeccCCC--CCCCceEEEEEEEcceeeeeccC-CCccccceeEEEEEEeeCcc-eEEEEEecCCcCC------CCC
Q 032599 11 PVFTKVDQLRP--GTSGHTLTVKVVSTKMVLQKGRG-DGTQVRQMRIAECLVGDETG-MIIFTARNDQVDL------MKE 80 (137)
Q Consensus 11 ~~~~kI~dL~p--~~~~v~l~~kVl~~~~~~~~~R~-DGs~~~~~~v~~~~VgDeTG-~I~ltlW~~~~~~------i~~ 80 (137)
-.|++|.+|.. ....++|.|.|.++++++++.++ +|+ ....+++.|.|+|| +|++|||++++.. ...
T Consensus 119 ~~f~~i~~i~~~~~~~~vDViG~V~~v~~~~~i~~k~~g~---~~~kr~i~L~D~sg~~i~~tLWg~~A~~f~~~~~~~~ 195 (444)
T 4gop_C 119 YEFVRINELESVEANQQCDVIGILDSYGELSEIVSKASQR---PVQKRELTLVDQGNRSVKLTLWGKTAETFPTNAGVDE 195 (444)
T ss_dssp CCBCCGGGGGGSCSSCCCBEEEEEEEECCCEEECCTTTCS---CEEEEEEEEECTTCBEEEEEEEHHHHHTSTTSTTSSS
T ss_pred ecccCHHHHhccCCCCceEEEEEEEEcCCcEEEEEccCCc---eeeEEEEEEEeCCCCEEEEEEEhhhhhhhhhhhccCC
Confidence 35888999875 34568999999999999988776 675 48899999999999 9999999987754 468
Q ss_pred CCEEEEeceEEcccCCeEEEEeCCcEeEEEcCC
Q 032599 81 GTTVILRNAKIDMFKGSMRLAVDKWGRVEVAEP 113 (137)
Q Consensus 81 Gd~v~I~na~~~~~~g~~~L~vg~~g~I~~~~~ 113 (137)
|++|.|.+++++.|+|. .|+++..++|...|+
T Consensus 196 ~~VV~i~~~kV~~f~G~-~ls~~~~s~i~inPd 227 (444)
T 4gop_C 196 KPVLAFKGVKVGDFGGR-SLSMFSSSTMLINPD 227 (444)
T ss_dssp CCEEEEESCEEECTTSS-EEECCTTCEEEESCS
T ss_pred CCEEEEEeEEEeecCCe-EEeccccceEEECCC
Confidence 99999999999999996 999999999987764
No 13
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=97.86 E-value=0.00014 Score=58.19 Aligned_cols=88 Identities=17% Similarity=0.171 Sum_probs=69.7
Q ss_pred CCCeeeeeccCCCCCCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEeeC--cceEEEEEecC---CcCCC-CCCC
Q 032599 9 RKPVFTKVDQLRPGTSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDE--TGMIIFTARND---QVDLM-KEGT 82 (137)
Q Consensus 9 ~~~~~~kI~dL~p~~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgDe--TG~I~ltlW~~---~~~~i-~~Gd 82 (137)
.+-.+++|++|+.+ ..+|+.|.|++...|... | |+ .-+.++.|.|+ .| +++.+|.+ ....+ ++||
T Consensus 2 ~~y~y~~l~~l~~~-~~vnvigVV~~~~~p~~s-~--G~----d~~~tl~I~D~S~~g-l~v~iF~~~~~~LP~v~~~GD 72 (294)
T 1xjv_A 2 TNYIYTPLNQLKGG-TIVNVYGVVKFFKPPYLS-K--GT----DYCSVVTIVDQTNVK-LTCLLFSGNYEALPIIYKNGD 72 (294)
T ss_dssp CCCCCCCGGGCCSS-EEEEEEEEEEEEEEEEEC-S--SS----SEEEEEEEECTTCCE-EEEEEEESSGGGSCCCCSTTC
T ss_pred CcceEEEHHHhhCC-CeeEEEEEEEEcCCCccC-C--CC----eEEEEEEEEcCCCCC-EEEEEECCChHHCCCCCCCCC
Confidence 35678899999874 458999999999888654 2 43 68899999994 55 88888864 34445 8999
Q ss_pred EEEEeceEEcccCCeEEEEeCCc
Q 032599 83 TVILRNAKIDMFKGSMRLAVDKW 105 (137)
Q Consensus 83 ~v~I~na~~~~~~g~~~L~vg~~ 105 (137)
+|++++..++.|+|.+.+..+..
T Consensus 73 II~l~~vki~~~~g~~~~v~~~~ 95 (294)
T 1xjv_A 73 IVRFHRLKIQVYKKETQGITSSG 95 (294)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEEEEEECCeEEEEccCC
Confidence 99999999999999998866443
No 14
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=97.75 E-value=0.0002 Score=51.24 Aligned_cols=74 Identities=14% Similarity=0.070 Sum_probs=56.8
Q ss_pred CCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEeeCcceEEEEEecCC-------cCCCCCCCEEEEeceEEcccC
Q 032599 23 TSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDETGMIIFTARNDQ-------VDLMKEGTTVILRNAKIDMFK 95 (137)
Q Consensus 23 ~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgDeTG~I~ltlW~~~-------~~~i~~Gd~v~I~na~~~~~~ 95 (137)
-..+.+.|+|.++.+. ..-....|.|.||.|....|++. ...+++|+.|++.|.. +.|+
T Consensus 36 i~~V~iVG~V~~~~~~-------------~~~~~~~ldD~TG~I~~~~W~~~~~~~~~~~~~~~~g~yVrV~G~v-~~f~ 101 (136)
T 4gop_B 36 LGQLTFVAVVRNISRN-------------ATNVAYSVEDGTGQIEVRQWLDSSSDDSSKASEIRNNVYVRVLGTL-KSFQ 101 (136)
T ss_dssp CCEEEEEEEEEEEEEC-------------SSEEEEEEECSSCEEEEEEECC--------CCSCCTTCEEEEEEEE-EEET
T ss_pred EEEEEEEEEEEEEEec-------------CCeEEEEEECCCCCEEEEEecccCCcccccccccCCCCEEEEEEEE-EEeC
Confidence 4567899999988542 23456789999999999999842 3568999999999885 7899
Q ss_pred CeEEEEeCCcEeEEEcCC
Q 032599 96 GSMRLAVDKWGRVEVAEP 113 (137)
Q Consensus 96 g~~~L~vg~~g~I~~~~~ 113 (137)
|..+|.+- .|.++.+
T Consensus 102 g~~qi~~~---~ir~v~d 116 (136)
T 4gop_B 102 NRRSISSG---HMRPVID 116 (136)
T ss_dssp TEEEEEES---EEEECSS
T ss_pred CEEEEEEE---EEEECCC
Confidence 99999875 4555543
No 15
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=97.62 E-value=0.00036 Score=49.64 Aligned_cols=75 Identities=13% Similarity=0.039 Sum_probs=56.3
Q ss_pred CCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEeeCcc-eEEEEEecCC------cCCCCCCCEEEEeceEEcccC
Q 032599 23 TSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDETG-MIIFTARNDQ------VDLMKEGTTVILRNAKIDMFK 95 (137)
Q Consensus 23 ~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgDeTG-~I~ltlW~~~------~~~i~~Gd~v~I~na~~~~~~ 95 (137)
-..+.+.|.|.++.+. ..-....|.|.|| +|....|.+. ...+++|+.|++.|. ++.|+
T Consensus 31 i~~V~iVG~V~~~~~~-------------~~~~~~~ldD~TG~~I~~~~W~~~~~~~~~~~~~~~g~yVrV~G~-l~~f~ 96 (132)
T 3kdf_D 31 ISQVTIVGIIRHAEKA-------------PTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGH-LRSFQ 96 (132)
T ss_dssp CCEEEEEEEEEEEEEC-------------SSEEEEEEECSSSSCEEEEEEC---------CCCCTTCEEEEEEE-EEEET
T ss_pred EEEEEEEEEEEEEEEc-------------CCeEEEEEECCCCCEEEEEEEccCCCcccccccccCCCEEEEEEE-EEeEC
Confidence 3557889999887542 2345678999999 9999999843 346899999999988 57799
Q ss_pred CeEEEEeCCcEeEEEcCCC
Q 032599 96 GSMRLAVDKWGRVEVAEPA 114 (137)
Q Consensus 96 g~~~L~vg~~g~I~~~~~~ 114 (137)
|..+|.+- .|.+++++
T Consensus 97 g~~qi~~~---~ir~v~d~ 112 (132)
T 3kdf_D 97 NKKSLVAF---KIMPLEDM 112 (132)
T ss_dssp TEEEEEEE---EEEECSST
T ss_pred CEEEEEEE---EEEEcCCc
Confidence 99999774 66666544
No 16
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=97.56 E-value=0.00058 Score=52.12 Aligned_cols=89 Identities=11% Similarity=0.103 Sum_probs=65.2
Q ss_pred Ceeeeecc----CCCCCCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEeeCc---c--eEEEEEecC---CcCCC
Q 032599 11 PVFTKVDQ----LRPGTSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDET---G--MIIFTARND---QVDLM 78 (137)
Q Consensus 11 ~~~~kI~d----L~p~~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgDeT---G--~I~ltlW~~---~~~~i 78 (137)
..|+.+.+ ++++ .-||+.|-|++...|....| |+ ..-+..+.|.|++ . .+.+.+..+ ....+
T Consensus 27 ~~~~~~r~~l~~~~~g-~~VNviGVVvd~~~P~~S~r--Gt---kD~~~TltI~D~S~~~~~~gL~v~iF~~~~e~LP~V 100 (187)
T 1qzg_A 27 LTFQSIRSSQELQKKN-TIVNLFGIVKDFTPSRQSLH--GT---KDWVTTVYLWDPTCDTSSIGLQIHLFSKQGNDLPVI 100 (187)
T ss_dssp EEEECHHHHTSCCSSC-EEEEEEEEEEEEEEEEECSS--TT---CCEEEEEEEECTTSCTTSCCEEEEEEESSSSCSCCC
T ss_pred eeEEEHHHHHhhccCC-CEEEEEEEEEEccCceecCC--CC---ccEEEEEEEEeCCCCCCCCceEEEEECCChhhCCCC
Confidence 44555444 3444 45899999999999876423 43 1588899999988 1 467777753 34445
Q ss_pred -CCCCEEEEeceEEcccCCeEEEEeCCc
Q 032599 79 -KEGTTVILRNAKIDMFKGSMRLAVDKW 105 (137)
Q Consensus 79 -~~Gd~v~I~na~~~~~~g~~~L~vg~~ 105 (137)
.+||+|++++..++.|+|.+.+...+.
T Consensus 101 ~~~GDIIlL~rvkiq~~~g~~~~v~~~~ 128 (187)
T 1qzg_A 101 KQVGQPLLLHQITLRSYRDRTQGLSKDQ 128 (187)
T ss_dssp CSTTCEEEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCCCEEEEEEEEEEEECCeEEEEEcCc
Confidence 789999999999999999999966554
No 17
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=97.38 E-value=0.0013 Score=52.06 Aligned_cols=73 Identities=12% Similarity=0.039 Sum_probs=53.5
Q ss_pred CceEEEEEEEcceeeeeccCCCccccceeEEEEEEeeCcc-eEEEEEecCC------cCCCCCCCEEEEeceEEcccCCe
Q 032599 25 GHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDETG-MIIFTARNDQ------VDLMKEGTTVILRNAKIDMFKGS 97 (137)
Q Consensus 25 ~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgDeTG-~I~ltlW~~~------~~~i~~Gd~v~I~na~~~~~~g~ 97 (137)
.|.++++|.++..- ..-....|.|.|| +|...+|++. ...+++|+.|+|.+ .++.|+|.
T Consensus 73 ~V~ivG~V~~i~~~-------------~~~~~~~L~D~TG~~I~~k~W~~~~~~~~~~~~~~~G~yVrV~G-~v~~f~g~ 138 (270)
T 2pi2_A 73 QVTIVGIIRHAEKA-------------PTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAG-HLRSFQNK 138 (270)
T ss_dssp EEEEEEEEEEEEEC-------------SSEEEEEEECSSSSCEEEEEECC-------CCCCCTTCEEEEEE-EEEEETTE
T ss_pred EEEEEEEEEEEEec-------------cceEEEEEECCCCCEEEEEEEcCcCcccchhhcCCCCCEEEEEE-EEEecCCe
Confidence 46667777665321 2455778999999 8999999743 34589999999997 55689999
Q ss_pred EEEEeCCcEeEEEcCCC
Q 032599 98 MRLAVDKWGRVEVAEPA 114 (137)
Q Consensus 98 ~~L~vg~~g~I~~~~~~ 114 (137)
++|.+- .|.++.++
T Consensus 139 ~qi~i~---~ir~v~d~ 152 (270)
T 2pi2_A 139 KSLVAF---KIMPLEDM 152 (270)
T ss_dssp EEEEEE---EEEECSCT
T ss_pred eEEEEE---EEEecCCH
Confidence 999876 46666543
No 18
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*
Probab=97.24 E-value=0.00038 Score=51.04 Aligned_cols=93 Identities=16% Similarity=0.186 Sum_probs=61.1
Q ss_pred CCeeeeeccCCCCCCCceEEEEEEEccee---eeeccCCCccccceeEEEEEE-eeCc------c--eEEEEEecCCc--
Q 032599 10 KPVFTKVDQLRPGTSGHTLTVKVVSTKMV---LQKGRGDGTQVRQMRIAECLV-GDET------G--MIIFTARNDQV-- 75 (137)
Q Consensus 10 ~~~~~kI~dL~p~~~~v~l~~kVl~~~~~---~~~~R~DGs~~~~~~v~~~~V-gDeT------G--~I~ltlW~~~~-- 75 (137)
+..|.-|+|+.|+.- ++++|.|+.+... -...=.|+|. ........+ +|++ | +++++||++++
T Consensus 2 ~~kf~llkdv~~~~F-~Dl~~qVv~~~~~~~~~~LyVTDYT~--N~~~~~~~~~~~~~~W~Gp~G~~tlqVtlwd~ha~~ 78 (143)
T 4hik_A 2 SDSFSLLSQITPHQR-CSFYAQVIKTWYSDKNFTLYVTDYTE--NELFFPMSPYTSSSRWRGPFGRFSIRCILWDEHDFY 78 (143)
T ss_dssp --CCCCGGGCCSSCE-EEEEEEEEEEEECSSCEEEEEECSCC--CTTSCCBCTTCTTCSCCCCCBSCCEEEEECHHHHHH
T ss_pred CchhhhHHhCCCCCe-EEEEEEEEEEEcCCCeEEEEEecCCC--CCcccccccCCCCccccCCCCcEEEEEEEECcHHHH
Confidence 345777999999754 8999999997632 1112235553 223332221 1211 3 89999999765
Q ss_pred --CCCCCCCEEEEeceEEccc-CCeEEEEeCCc
Q 032599 76 --DLMKEGTTVILRNAKIDMF-KGSMRLAVDKW 105 (137)
Q Consensus 76 --~~i~~Gd~v~I~na~~~~~-~g~~~L~vg~~ 105 (137)
+.+++||.|+|+|..+++. .|+++-.+...
T Consensus 79 ar~~lk~Gd~v~L~Nv~iK~~~~g~LEG~l~~d 111 (143)
T 4hik_A 79 CRNYIKEGDYVVMKNVRTKIDHLGYLECILHGD 111 (143)
T ss_dssp HTTTCCTTCEEEEEEEEEEECTTSCEEEEECCC
T ss_pred HHhhCCCCCEEEEEeEEEeecCCceEEEEEcCC
Confidence 4478999999999999996 46777776443
No 19
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=97.20 E-value=0.00022 Score=57.14 Aligned_cols=90 Identities=18% Similarity=0.186 Sum_probs=63.3
Q ss_pred CeeeeeccCCCCCCCceEEEEEEEccee----eeeccCCCccccceeEEE--------EEEee-------CcceEEEEEe
Q 032599 11 PVFTKVDQLRPGTSGHTLTVKVVSTKMV----LQKGRGDGTQVRQMRIAE--------CLVGD-------ETGMIIFTAR 71 (137)
Q Consensus 11 ~~~~kI~dL~p~~~~v~l~~kVl~~~~~----~~~~R~DGs~~~~~~v~~--------~~VgD-------eTG~I~ltlW 71 (137)
..+..|+||+++ .-++|+|+|+.+... -...=.|||. ..... ..-|| ...++.+++|
T Consensus 143 ~~~~~L~di~~~-~f~DLv~qVv~v~~~~~~~~~LyVwDgT~---~~~~~~~~~~~~~~~~gd~~~~~~~~~lt~~V~~~ 218 (294)
T 1xjv_A 143 WTLLKLCDVQPM-QYFDLTCQLLGKAEVDGASFLLKVWDGTR---TPFPSWRVLIQDLVLEGDLSHIHRLQNLTIDILVY 218 (294)
T ss_dssp -CCCCGGGCCSS-CEEEEEEEEEEEEECSSSEEEEEEECSSC---CSSCBCCCCCCSSCCEECHHHHHHHGGGSEEEEEE
T ss_pred CceeEHHHcccC-CeeeEEEEEEEEEecCCCeEEEEEECCCC---CCCCccccccccccccCcccccccccCeeEEEEEE
Confidence 357899999998 459999999988642 1122347774 22211 12233 3457999999
Q ss_pred cCCc---CCCCCCCEEEEeceEEccc--------CCeEEEEeCC
Q 032599 72 NDQV---DLMKEGTTVILRNAKIDMF--------KGSMRLAVDK 104 (137)
Q Consensus 72 ~~~~---~~i~~Gd~v~I~na~~~~~--------~g~~~L~vg~ 104 (137)
++++ ..+++||.|+|+|..++.. .++++..+..
T Consensus 219 d~h~~~~~~lk~Gd~V~l~Nv~~k~~~~~~~~~~~~~le~~lh~ 262 (294)
T 1xjv_A 219 DNHVHVARSLKVGSFLRIYSLHTKLQSMNSENQTMLSLEFHLHG 262 (294)
T ss_dssp TTHHHHHHHCCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEECS
T ss_pred cchhHHHhcCCCCcEEEEeeeEEEecccccccCCCcceEEEEec
Confidence 9875 4589999999999999998 5678877765
No 20
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Probab=96.84 E-value=0.0069 Score=52.13 Aligned_cols=91 Identities=9% Similarity=0.184 Sum_probs=66.3
Q ss_pred CCCCeeeeeccCC-CCCCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEeeCcce--------E-----EEEEecC
Q 032599 8 LRKPVFTKVDQLR-PGTSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDETGM--------I-----IFTARND 73 (137)
Q Consensus 8 l~~~~~~kI~dL~-p~~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgDeTG~--------I-----~ltlW~~ 73 (137)
-.+..|+.|+++. .....+||.|-|++...|... | |+ .-+....|.|+|=. + .+.+..+
T Consensus 33 ~~~y~y~~L~~a~~~~~~~VnviGVVvd~~~P~~T-~--G~----D~~~t~tI~D~S~~~~~~~~~Gl~~~~~~v~iF~~ 105 (495)
T 1jb7_A 33 GHKYEYVELAKASLTSAQPQHFYAVVIDATFPYKT-N--QE----RYICSLKIVDPTLYLKQQKGAGDASDYATLVLYAK 105 (495)
T ss_dssp ---CCBCCTTTSCSSCCSCEEEEEEEEEECCCEEC-S--SS----CEEEEEEEEBTTBSBCCTTSSCSCBCCEEEEEEES
T ss_pred cCCCccEEHHHHHhccCCeEEEEEEEeecCCceec-C--CC----eEEEEEEEEeCCCCcccccccccccCceEEEEECC
Confidence 4557899999775 234558999999999988753 2 43 68889999995322 3 6666643
Q ss_pred ---CcCCC-CCCCEEEEeceEEcccCCeEEEEeCCc
Q 032599 74 ---QVDLM-KEGTTVILRNAKIDMFKGSMRLAVDKW 105 (137)
Q Consensus 74 ---~~~~i-~~Gd~v~I~na~~~~~~g~~~L~vg~~ 105 (137)
.+..+ .+||+|+++++.++.|+|.+.+..+..
T Consensus 106 ~~e~LP~V~~~GDII~LhrvkIq~~ng~~~~v~~~~ 141 (495)
T 1jb7_A 106 RFEDLPIIHRAGDIIRVHRATLRLYNGQRQFNANVF 141 (495)
T ss_dssp SGGGSCCCCEETCEEEEEEEEEEEETTEEEEEEETT
T ss_pred ChHHCCCCCCCCCEEEEEEEEEEEECCcEEEEecCC
Confidence 44445 689999999999999999999876543
No 21
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=96.20 E-value=0.021 Score=42.23 Aligned_cols=71 Identities=11% Similarity=0.102 Sum_probs=52.7
Q ss_pred CCceEEEEEEEcceeeeeccCCCccccceeEEEEEEeeCcc-eEEEEEecCC-c------CCCCCCCEEEEeceEEcccC
Q 032599 24 SGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDETG-MIIFTARNDQ-V------DLMKEGTTVILRNAKIDMFK 95 (137)
Q Consensus 24 ~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgDeTG-~I~ltlW~~~-~------~~i~~Gd~v~I~na~~~~~~ 95 (137)
+.|.|.|.|+++.+.. .-....|-|.|| +|...+|-+. . ..+.+|+.++++|.. +.|+
T Consensus 48 ~~V~IvGiVv~~~~~~-------------~~~~ytIDD~TG~~I~cv~w~~~~~~~~~~~~~l~~G~~VrV~G~v-~~fr 113 (159)
T 3kf6_A 48 RWIQIVGYIAAIDIYE-------------GKHVLTVDDCSGMVLRVVFIIQDDFSMSKRAISMSPGNVVCVFGKI-NSFR 113 (159)
T ss_dssp CEEEEEEEEEEEEEET-------------TEEEEEEECSSSCEEEEEEEGGGCHHHHHHHTTCCTTCEEEEEEEE-ECSS
T ss_pred EEEEEEEEEEEEEEeC-------------CEEEEEEecCCCCeEEEEEEccCCCCcccccccCCCCCEEEEEEEE-EeeC
Confidence 4578999999976431 123458999999 5999999754 2 236899999999876 6788
Q ss_pred CeEEEEeCCcEeE
Q 032599 96 GSMRLAVDKWGRV 108 (137)
Q Consensus 96 g~~~L~vg~~g~I 108 (137)
|..+|.+.+.-.+
T Consensus 114 ~~rqI~~~~i~~v 126 (159)
T 3kf6_A 114 SEVELIAQSFEEL 126 (159)
T ss_dssp SSCEEEEEEEEEE
T ss_pred CEEEEEEEEEEEC
Confidence 8889877654443
No 22
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=93.82 E-value=0.51 Score=40.01 Aligned_cols=96 Identities=9% Similarity=0.094 Sum_probs=62.6
Q ss_pred cCCCCCCCeeeeeccCCCC-CCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEeeCcceEEEEEecCC------cC
Q 032599 4 SKSGLRKPVFTKVDQLRPG-TSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDETGMIIFTARNDQ------VD 76 (137)
Q Consensus 4 ~~~~l~~~~~~kI~dL~p~-~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgDeTG~I~ltlW~~~------~~ 76 (137)
++++|..+..++|++|... ...|.|.|.|-++ |.-| ..+.=+.+-|.||.|.+++=.+. +.
T Consensus 10 ~~~~~~~~~~~~i~~~~~~~g~~V~v~Gwv~~~-------R~~G-----k~~~Fi~LrD~sg~iQvv~~~~~~~~~~~~~ 77 (456)
T 3m4p_A 10 TTTPVETPIVCNIRDAAGLEGKLVTFKGWAYHI-------RKAR-----KTLIFVELRDGSGYCQCVIFGKELCEPEKVK 77 (456)
T ss_dssp ------CCCCEECCSTTCCCSSEEEEEEEEEEE-------ECCS-----SSEEEEEEECSSCEEEEEEESTTTTCHHHHT
T ss_pred cccCCCcceEEEhhhhhhcCCCEEEEEEEEEEE-------ecCC-----CceEEEEEEeCCccEEEEEecccchhhHHhh
Confidence 4677888899999999543 2336666776654 3223 24666788999999988775422 23
Q ss_pred CCCCCCEEEEeceEEcccC----------CeEEEEeCCcEeEEEc
Q 032599 77 LMKEGTTVILRNAKIDMFK----------GSMRLAVDKWGRVEVA 111 (137)
Q Consensus 77 ~i~~Gd~v~I~na~~~~~~----------g~~~L~vg~~g~I~~~ 111 (137)
.+..|++|.+.|-.++... |.++|.+.+.--+.+.
T Consensus 78 ~l~~g~~V~V~G~v~~~~~~~~~~~~~t~g~~El~~~~i~vl~~a 122 (456)
T 3m4p_A 78 LLTRECSLEITGRLNAYAGKNHPPEIADILNLEMQVTEWKVIGES 122 (456)
T ss_dssp TCCTTCEEEEEEEEECCCSSSCCCSCTTBCSSEEEEEEEEEEECC
T ss_pred cCCCccEEEEEeEEEecCCcccCcccCCCCcEEEEEeEEEEEecC
Confidence 5789999999998875433 7789888776665554
No 23
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Probab=93.80 E-value=0.37 Score=41.38 Aligned_cols=88 Identities=15% Similarity=0.260 Sum_probs=66.1
Q ss_pred CCCeeeeec-cCCCCCCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEeeCcceEEEEEecC-CcCCCCCCCEEEE
Q 032599 9 RKPVFTKVD-QLRPGTSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDETGMIIFTARND-QVDLMKEGTTVIL 86 (137)
Q Consensus 9 ~~~~~~kI~-dL~p~~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgDeTG~I~ltlW~~-~~~~i~~Gd~v~I 86 (137)
....|..|+ |++++.- ++|+|+||.+... |+ .-....|-|.||.-.++++-. +...+.+|++++|
T Consensus 207 ~~~~f~~L~~di~~~~f-~DLv~qVv~~~~~------d~------~~~~L~VwDgT~~~~~~~~~~~~fP~~~~G~Vlri 273 (495)
T 1jb7_A 207 SSDMYTALNKAQAQKGD-FDVVAKILQVHEL------DE------YTNELKLKDASGQVFYTLSLKLKFPHVRTGEVVRI 273 (495)
T ss_dssp CGGGSCCGGGGGGCSSC-EEEEEEEEEEEEC------SS------SEEEEEEEETTCCEEEEEEETTTCTTCCTTCEEEE
T ss_pred cccchhhhhhhhccCCc-eeEEEEEeEEecc------CC------CeEEEEEEeCCCCCcceeeccccCCceeeEEEEEE
Confidence 455677899 9999864 8999999998764 21 224568899999999987763 4456778999999
Q ss_pred eceEEcccCC-eEEEEeCCcEeEE
Q 032599 87 RNAKIDMFKG-SMRLAVDKWGRVE 109 (137)
Q Consensus 87 ~na~~~~~~g-~~~L~vg~~g~I~ 109 (137)
.+....+.-. ...+..+.|-+|.
T Consensus 274 ~~~~~de~~~~l~~~~~~~w~ni~ 297 (495)
T 1jb7_A 274 RSATYDETSTQKKVLILSHYSNII 297 (495)
T ss_dssp EEEEECTTCCSSCEEEEEEEEEEE
T ss_pred ecCccchhhhhhhhhcccccccee
Confidence 9998886433 4567777886665
No 24
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=91.57 E-value=1.2 Score=29.87 Aligned_cols=63 Identities=11% Similarity=0.168 Sum_probs=46.7
Q ss_pred CCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEe-----eCcce-------EEEEEecCCcC----CCCCCCEEEE
Q 032599 23 TSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVG-----DETGM-------IIFTARNDQVD----LMKEGTTVIL 86 (137)
Q Consensus 23 ~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~Vg-----DeTG~-------I~ltlW~~~~~----~i~~Gd~v~I 86 (137)
++.+.|.+++..-.+.+.+. .| ..|++..|| ++++- +++++|...|+ .++.|+.|.|
T Consensus 2 ~N~v~L~G~l~~dpelR~t~--~G-----~~v~~f~lA~~~~~~~~~~~r~~~~~~~vv~~g~~Ae~~~~~l~KG~~V~V 74 (104)
T 1txy_A 2 TNRLVLSGTVCRAPLRKVSP--SG-----IPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITV 74 (104)
T ss_dssp CEEEEEEEEEEEEEEEEECT--TS-----CEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSTTHHHHTTCCTTCEEEE
T ss_pred cEEEEEEEEECCCceEEECC--CC-----CEEEEEEEEEeCccccCCceeceeEEEEEEEEhHHHHHHHhhCCCCCEEEE
Confidence 35578999988877776553 45 467776665 45677 99999997654 3689999999
Q ss_pred eceEEc
Q 032599 87 RNAKID 92 (137)
Q Consensus 87 ~na~~~ 92 (137)
.|-...
T Consensus 75 ~G~L~~ 80 (104)
T 1txy_A 75 QGFISC 80 (104)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 987654
No 25
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=90.19 E-value=1.7 Score=40.59 Aligned_cols=86 Identities=14% Similarity=0.181 Sum_probs=64.8
Q ss_pred CeeeeeccCCCCCCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEeeCcceEEEEEecCC------cCCCCCCCEE
Q 032599 11 PVFTKVDQLRPGTSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDETGMIIFTARNDQ------VDLMKEGTTV 84 (137)
Q Consensus 11 ~~~~kI~dL~p~~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgDeTG~I~ltlW~~~------~~~i~~Gd~v 84 (137)
...++|.+|.....++.+.+.|.++. .++. | .| ..+...-|-|-|++|.+-.|-.. .+.++.|+.|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~g~v~~~~-~~~~-~-~~-----~~~~~~~~td~~~~~~~k~f~~~~~~~~~~~~~~~g~~~ 76 (1041)
T 3f2b_A 5 EPVRRLETIVEEERRVVVQGYVFDAE-VSEL-K-SG-----RTLLTMKITDYTNSILVKMFSRDKEDAELMSGVKKGMWV 76 (1041)
T ss_dssp --CBCGGGCCSCEEEEEEEEEEEEEE-EEEC-T-TS-----CEEEEEEEECSSCEEEEEEECSSHHHHHHHHTCCTTCEE
T ss_pred cCcccHHHhhcccceEEEEEEEEEEE-EEEc-c-CC-----CEEEEEEEEeCCCCEEEEEeecccchHHHHhcCCCCCEE
Confidence 45788999999999999999999964 4554 2 34 46788999999999999888532 2458999999
Q ss_pred EEeceE-EcccCCeEEEEeCC
Q 032599 85 ILRNAK-IDMFKGSMRLAVDK 104 (137)
Q Consensus 85 ~I~na~-~~~~~g~~~L~vg~ 104 (137)
++++-. ...|.+.+.+.+..
T Consensus 77 ~~~g~~~~d~~~~~~~~~~~~ 97 (1041)
T 3f2b_A 77 KVRGSVQNDTFVRDLVIIAND 97 (1041)
T ss_dssp EEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEEeccCCcceEEEeee
Confidence 998764 35577766666653
No 26
>3rn5_A Interferon-inducible protein AIM2; OB fold, DNA binding, cytosolic, immune system-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 3rn2_A*
Probab=89.75 E-value=2.2 Score=32.69 Aligned_cols=77 Identities=19% Similarity=0.202 Sum_probs=63.2
Q ss_pred EEEEEEEcceeeeeccCCCccccceeEEEEEEeeCcceEEEEEecC-CcCCCCCCCEEEEeceEEcccCCeEEEEeCCcE
Q 032599 28 LTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDETGMIIFTARND-QVDLMKEGTTVILRNAKIDMFKGSMRLAVDKWG 106 (137)
Q Consensus 28 l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgDeTG~I~ltlW~~-~~~~i~~Gd~v~I~na~~~~~~g~~~L~vg~~g 106 (137)
+.+.||...+|=++....| ..+|..+.||-+|--.++-..+- .-+.+.+..+|.|.|.+ .++|.+++ .+.+
T Consensus 15 ~~VmVLkaTepF~Ye~~E~----~~~MFHATVATetqfF~VKVfn~~LKeKF~pk~iI~ISdY~--~~~gfLEi--~~~S 86 (208)
T 3rn5_A 15 LPVMVLKAKKPFTFETQEG----KQEMFHATVATEKEFFFVKVFNTLLKDKFIPKRIIIIARYY--RHSGFLEV--NSAS 86 (208)
T ss_dssp EEEEEEEECCCEEEEETTE----EEEEEEEEEECSSCEEEEEECCGGGGGTCCTTCEEEEESBE--ECSSCEEE--CTTS
T ss_pred eEEEEEeccCCeeeecccc----cceEEEEEEeeccceEEEEEecchhhhhcCCCcEEEEEecc--cccceEEE--eccc
Confidence 7899999999887765554 35899999999999999999994 44568999999999988 45786665 6778
Q ss_pred eEEEcC
Q 032599 107 RVEVAE 112 (137)
Q Consensus 107 ~I~~~~ 112 (137)
+|..++
T Consensus 87 sVse~~ 92 (208)
T 3rn5_A 87 RVLDAE 92 (208)
T ss_dssp EEEECC
T ss_pred EEEEcc
Confidence 888875
No 27
>3rlo_A Gamma-interferon-inducible protein 16; HIN200/OB fold/DNA binding, DNA binding/cytosolic DNA sensor cytosol, DNA binding protein; 1.80A {Homo sapiens} PDB: 3rnu_A* 3b6y_A 3rln_A
Probab=89.35 E-value=3.7 Score=31.40 Aligned_cols=76 Identities=11% Similarity=0.054 Sum_probs=62.4
Q ss_pred EEEEEEEcceeeeeccCCCccccceeEEEEEEeeCcceEEEEEecC-CcCCCCCCCEEEEeceEEcccCCeEEEEeCCcE
Q 032599 28 LTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDETGMIIFTARND-QVDLMKEGTTVILRNAKIDMFKGSMRLAVDKWG 106 (137)
Q Consensus 28 l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgDeTG~I~ltlW~~-~~~~i~~Gd~v~I~na~~~~~~g~~~L~vg~~g 106 (137)
+.+.||...+|=++....+ .+|..+.||-+|--.++-..+- .-+.+.+..+|.|.|.+ .++|.+++ .+.+
T Consensus 12 ~~VmVLkaTepF~Ye~~E~-----k~MFHATVATetqfF~VKVfn~~LKeKF~pk~iI~ISdY~--~~~gfLEi--~~~S 82 (204)
T 3rlo_A 12 KEVMVLNATESFVYEPKEQ-----KKMFHATVATENEVFRVKVFNIDLKEKFTPKKIIAIANYV--CRNGFLEV--YPFT 82 (204)
T ss_dssp EEEEEEEECCCEEEETTTT-----EEEEEEEEECSSCEEEEEECCGGGTTTTCTTCEEEEESCE--EETTEEEE--CTTS
T ss_pred eEEEEEeccCCceeccccc-----ceEEEEEEeeccceEEEEEecchhhhhcCCCcEEEEEecc--cccceEEE--eccc
Confidence 7889999999877754442 6899999999999999999995 44568999999999988 45786655 6778
Q ss_pred eEEEcC
Q 032599 107 RVEVAE 112 (137)
Q Consensus 107 ~I~~~~ 112 (137)
+|..++
T Consensus 83 sVse~~ 88 (204)
T 3rlo_A 83 LVADVN 88 (204)
T ss_dssp EEEECC
T ss_pred EEEEcc
Confidence 888875
No 28
>3rn5_A Interferon-inducible protein AIM2; OB fold, DNA binding, cytosolic, immune system-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 3rn2_A*
Probab=89.29 E-value=3 Score=31.99 Aligned_cols=87 Identities=16% Similarity=0.219 Sum_probs=60.8
Q ss_pred eeeccCCCCCCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEeeCcceEEEEEecCCcCC-CCCCCEEEEeceEEc
Q 032599 14 TKVDQLRPGTSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDETGMIIFTARNDQVDL-MKEGTTVILRNAKID 92 (137)
Q Consensus 14 ~kI~dL~p~~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgDeTG~I~ltlW~~~~~~-i~~Gd~v~I~na~~~ 92 (137)
.||.+|.....+. +.--+..+..... ++ ...+ --|-|.||.+.+......... .++||-+++.==..+
T Consensus 111 PKI~~L~~q~~Gt-~V~G~F~v~KK~v--~~------~~~~--YeI~DnTG~MeVvv~G~~~~i~CEeGDKLrL~cFeL~ 179 (208)
T 3rn5_A 111 PKINTLQTQPLGT-IVNGLFVVQKVTE--KK------KNIL--FDLSDNTGKMEVLGVRNEDTMKCKEGDKVRLTFFTLS 179 (208)
T ss_dssp CCHHHHHTSCSSC-EEEEEEEEEEEEE--CS------SEEE--EEEEETTEEEEEEEECSTGGGSCCTTCEEEEEEEEEE
T ss_pred cchhhhhcCCCCC-EEeEEEEEEEEEe--cc------ceEE--EEEecCCCcEEEEEeccCcccccCCCCeeEEEEEEEe
Confidence 4677777776664 3333444433322 11 1233 367899999999777765444 489999999988888
Q ss_pred ccCCeEEEEeCCcEeEEEc
Q 032599 93 MFKGSMRLAVDKWGRVEVA 111 (137)
Q Consensus 93 ~~~g~~~L~vg~~g~I~~~ 111 (137)
...+.++|..+..+-|...
T Consensus 180 ~~~~~~qL~s~~HSfikVi 198 (208)
T 3rn5_A 180 KNGEKLQLTSGVHSTIKVI 198 (208)
T ss_dssp ECSSSEEEECCTTCEEEEE
T ss_pred ccCCeeeEEEecceeEEEE
Confidence 8889999999999977654
No 29
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=88.38 E-value=2.9 Score=28.68 Aligned_cols=60 Identities=18% Similarity=0.163 Sum_probs=47.8
Q ss_pred CCceEEEEEEEcceeeeeccCCCccccceeEEEEEEe-----eCcceEEEEEecCCcCCC--CCCCEEEEeceE
Q 032599 24 SGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVG-----DETGMIIFTARNDQVDLM--KEGTTVILRNAK 90 (137)
Q Consensus 24 ~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~Vg-----DeTG~I~ltlW~~~~~~i--~~Gd~v~I~na~ 90 (137)
+.|.|.+++..-.+.+.+. .| ..++...|| |++--|++++|..+|+.+ ..|+-|.+.|-.
T Consensus 12 N~V~LiGrl~~dpelr~t~--~G-----~~v~~f~lAV~R~~~~~Dfi~ivvw~klAe~~~~~kG~~v~v~G~l 78 (107)
T 4gs3_A 12 NTVTLVGKVFTPLEFSHEL--YG-----EKFFNFILEVPRLSETKDYLPITISNRLFEGMNLEVGTRVKIEGQL 78 (107)
T ss_dssp SCEEEEEEECSCCEEEEEE--TT-----EEEEEEEEEEECTTSCEEEEEEEEEGGGSTTCCCCTTCEEEEEEEE
T ss_pred CEEEEEEEECCCceEEEec--CC-----cEEEEEEEEeCCCCCCCcEEEEEEEhHHhhHHhhcCCCEEEEEEEE
Confidence 5688999998877777654 55 467777776 889999999999877664 589999999865
No 30
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=87.70 E-value=3 Score=35.04 Aligned_cols=85 Identities=13% Similarity=0.041 Sum_probs=60.0
Q ss_pred eeccCCCC--CCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEeeCcceEEEEEecCC--------cCCCCCCCEE
Q 032599 15 KVDQLRPG--TSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDETGMIIFTARNDQ--------VDLMKEGTTV 84 (137)
Q Consensus 15 kI~dL~p~--~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgDeTG~I~ltlW~~~--------~~~i~~Gd~v 84 (137)
.+++|.+. .+.|.|.|+|-++ |. - +.++=+.+-|.+|.|.+++=.+. +..+..|++|
T Consensus 6 ~~~~l~~~~~g~~V~v~Gwv~~~---R~----~------g~~~Fi~LrD~~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~V 72 (438)
T 3nem_A 6 YSSEITEELNGQKVKVAGWVWEV---KD----L------GGIKFLWIRDRDGIVQITAPKKKVDPELFKLIPKLRSEDVV 72 (438)
T ss_dssp CGGGCCGGGTTCEEEEEEEEEEE---EE----E------TTEEEEEEEETTEEEEEEEETTTSCHHHHHHGGGCCTTCEE
T ss_pred EHHHcchhcCCCEEEEEEEEEEE---ec----C------CCeEEEEEEECCeeEEEEEeCCcCCHHHHHHHhcCCCCCEE
Confidence 35566653 3457777877664 22 1 35666788999999998876543 3457899999
Q ss_pred EEeceEEcccC--CeEEEEeCCcEeEEEcC
Q 032599 85 ILRNAKIDMFK--GSMRLAVDKWGRVEVAE 112 (137)
Q Consensus 85 ~I~na~~~~~~--g~~~L~vg~~g~I~~~~ 112 (137)
.+.|-..+..+ |.++|.+.+.--+.+..
T Consensus 73 ~V~G~v~~~~~~~~~~el~~~~i~vl~~~~ 102 (438)
T 3nem_A 73 AVEGVVNFTPKAKLGFEILPEKIVVLNRAE 102 (438)
T ss_dssp EEEEEEEECTTSTTSEEEEEEEEEEEECBC
T ss_pred EEEEEEEeCCCCCCcEEEEEEEEEEEecCC
Confidence 99998876655 78999988776666553
No 31
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=87.61 E-value=1.2 Score=30.64 Aligned_cols=64 Identities=17% Similarity=0.150 Sum_probs=46.8
Q ss_pred CCCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEe-------eCcceEEEEEecCCcCC----CCCCCEEEEeceE
Q 032599 22 GTSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVG-------DETGMIIFTARNDQVDL----MKEGTTVILRNAK 90 (137)
Q Consensus 22 ~~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~Vg-------DeTG~I~ltlW~~~~~~----i~~Gd~v~I~na~ 90 (137)
-|+.+.|.+++..-.+.+.+. +| ...|++..|| |+|--+++++|..+|+. ++.|+-|.|.|-.
T Consensus 10 ~~~~v~LiGrL~~DPelR~t~--~g----~~~va~f~lAv~~~~~~~~t~fi~vv~wgk~AE~~~~yl~KG~~V~VeGrL 83 (108)
T 3koj_A 10 HMNSCILQATVVEAPQLRYAQ--DN----QTPVAEMVVQFPGLSSKDAPARLKVVGWGAVAQELQDRCRLNDEVVLEGRL 83 (108)
T ss_dssp SCEEEEEEEEEEEEEEEEECT--TS----SSEEEEEEEEECC-----CCEEEEEEEETHHHHHHHHHCCTTCEEEEEEEE
T ss_pred ccceEEEEEEECCCCEEEEeC--CC----CEEEEEEEEEECCcccCCCcEEEEEEEEhHHHHHHHHhCCCCCEEEEEEEE
Confidence 466788999998876766543 33 1367777776 35667999999976644 6899999999875
Q ss_pred E
Q 032599 91 I 91 (137)
Q Consensus 91 ~ 91 (137)
.
T Consensus 84 ~ 84 (108)
T 3koj_A 84 R 84 (108)
T ss_dssp E
T ss_pred E
Confidence 4
No 32
>2oq0_A Gamma-interferon-inducible protein IFI-16; OB folds, beta-barrels, structural genomics, PSI-2, protein initiative; 2.00A {Homo sapiens} SCOP: b.40.16.1 b.40.16.1
Probab=87.40 E-value=8.2 Score=29.53 Aligned_cols=87 Identities=15% Similarity=0.181 Sum_probs=61.1
Q ss_pred eeeccCCCCCCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEeeCcceEEEEEecCCcCC-CCCCCEEEEeceEEc
Q 032599 14 TKVDQLRPGTSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDETGMIIFTARNDQVDL-MKEGTTVILRNAKID 92 (137)
Q Consensus 14 ~kI~dL~p~~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgDeTG~I~ltlW~~~~~~-i~~Gd~v~I~na~~~ 92 (137)
-||.+|.....+. +.--+..+..... +. ...+. -|.|.||.+-+..-...... .++||.+++.--..+
T Consensus 115 pKI~~L~~qa~Gt-~V~GlF~v~kk~v--~~------~~~~y--eI~D~tG~MeVvv~G~~~~i~CeeGdkLrL~cF~L~ 183 (206)
T 2oq0_A 115 LKIDILHKQASGN-IVYGVFMLHKKTV--NQ------KTTIY--EIQDDRGKMDVVGTGQCHNIPCEEGDKLQLFCFRLR 183 (206)
T ss_dssp CCHHHHTTSCTTC-EEEEEEEEEEEEE--CS------SEEEE--EEEETTEEEEEEEEGGGSSCCCCTTCEEEEEEEEEE
T ss_pred ccchhhhccCCcc-EEceEEEEEEEee--cc------ceEEE--EEccCCCcEEEEEeCcccccccCCCCEEEEEEEEee
Confidence 4788888777774 4444444433222 11 12333 68999999999777654343 489999999988888
Q ss_pred ccCCeEEEEeCCcEeEEEc
Q 032599 93 MFKGSMRLAVDKWGRVEVA 111 (137)
Q Consensus 93 ~~~g~~~L~vg~~g~I~~~ 111 (137)
...+...|..+..+.|...
T Consensus 184 ~~~~~~~L~S~~hSfikvi 202 (206)
T 2oq0_A 184 KKNQMSKLISEMHSFIQIK 202 (206)
T ss_dssp EETTEEEEECCTTCEEEEC
T ss_pred ccCCcceEEEecceeEEEE
Confidence 8889999999999877654
No 33
>2xvs_A Tetratricopeptide repeat protein 5; antitumor protein, P53 cofactor, stress-response; 1.80A {Homo sapiens}
Probab=86.67 E-value=3.3 Score=30.72 Aligned_cols=75 Identities=19% Similarity=0.144 Sum_probs=52.5
Q ss_pred CCCeeeeeccCCCC-CCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEeeCcce-EEEEEec-CCcCCCCCCCEEE
Q 032599 9 RKPVFTKVDQLRPG-TSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDETGM-IIFTARN-DQVDLMKEGTTVI 85 (137)
Q Consensus 9 ~~~~~~kI~dL~p~-~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgDeTG~-I~ltlW~-~~~~~i~~Gd~v~ 85 (137)
.+-....+.+|+|| .+++-+.+||+-.-.. +. ..=...++.|..|+ +-+++.+ .+-..+.+||.|.
T Consensus 59 ~~l~~~~l~~L~~G~N~g~vv~gKVv~~i~~------e~-----~vP~~f~~vD~~g~c~avsVYNl~~~~G~~iGDsV~ 127 (166)
T 2xvs_A 59 VTLELKPLSTLQPGVNSGAVILGKVVFSLTT------EE-----KVPFTFGLVDSDGPCYAVMVYNIVQSWGVLIGDSVA 127 (166)
T ss_dssp ECCEECCGGGCCSEECTTEEEEEEEEEEECC------TT-----CCSEEEEEESSSSCCEEEEECCCCSSCCCCTTCEEE
T ss_pred ceeeeeeHHHcccccCCCcEEEEEEEEEecC------CC-----CCceEEEEECCCCCEEEEEEEeccCCcceEecCEEE
Confidence 35667889999998 5667788998764322 11 12234577787775 5677787 3434489999999
Q ss_pred EeceEEccc
Q 032599 86 LRNAKIDMF 94 (137)
Q Consensus 86 I~na~~~~~ 94 (137)
|-..+++..
T Consensus 128 IpeP~v~~v 136 (166)
T 2xvs_A 128 IPEPNLRLH 136 (166)
T ss_dssp EESCEEEEE
T ss_pred eCCCcEEEE
Confidence 999998763
No 34
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=85.75 E-value=3 Score=34.99 Aligned_cols=79 Identities=16% Similarity=0.189 Sum_probs=54.3
Q ss_pred eeeccCCCCCCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEeeCcceEEEEEecC---C---cCCCCCCCEEEEe
Q 032599 14 TKVDQLRPGTSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDETGMIIFTARND---Q---VDLMKEGTTVILR 87 (137)
Q Consensus 14 ~kI~dL~p~~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgDeTG~I~ltlW~~---~---~~~i~~Gd~v~I~ 87 (137)
.+|+++.|.. ++.+.+.|.+.....+ -| +.+. .+.|++|+|++.+|.+ . +..+.+||.|.+.
T Consensus 276 ~~i~~~~~~~-~~~v~G~V~~~P~~~~----GG-----HV~f--~l~d~~~~i~c~ayeptk~fr~~vr~L~~GD~V~v~ 343 (402)
T 3au7_A 276 EEVHRLENYR-SYRLRGRVTLEPYDIE----GG-----HVFF--EIDTKFGSVKCAAFEPTKQFRNVIRLLRKGDVVEVY 343 (402)
T ss_dssp GGCSSCCTTC-EEEEEEEEEEEEEEET----TT-----EEEE--EEEETTEEEEEEECGGGTTHHHHHTTCCTTCEEEEE
T ss_pred ccccccccCc-eEEEEEEEecCcEecc----Cc-----eEEE--EEEcCCCEEEEEEEccchHHHHHHhcCCCCCEEEEE
Confidence 3478888865 4789999988633221 22 3444 5678999999999993 1 3456899999999
Q ss_pred ceEEcccCCeEEEEeCCcEeEE
Q 032599 88 NAKIDMFKGSMRLAVDKWGRVE 109 (137)
Q Consensus 88 na~~~~~~g~~~L~vg~~g~I~ 109 (137)
++... | +|++-+.--+.
T Consensus 344 G~v~~---g--tLnvEk~~v~~ 360 (402)
T 3au7_A 344 GSMKK---D--TINLEKIQIVE 360 (402)
T ss_dssp EEEET---T--EEEEEEEEEEE
T ss_pred EeecC---C--EEEEEEEEEcc
Confidence 99544 3 66665544443
No 35
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=85.63 E-value=6.1 Score=32.90 Aligned_cols=81 Identities=15% Similarity=0.096 Sum_probs=57.8
Q ss_pred eeccCC-CCCCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEeeCcceEEEEEecCCcCCCC-CCCEEEEeceEEc
Q 032599 15 KVDQLR-PGTSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDETGMIIFTARNDQVDLMK-EGTTVILRNAKID 92 (137)
Q Consensus 15 kI~dL~-p~~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgDeTG~I~ltlW~~~~~~i~-~Gd~v~I~na~~~ 92 (137)
.+++|. .....|.|.|+|-++ | .- +.+.=+.+-|.+|.|.+++-. ..+. .||+|.+.|-..+
T Consensus 4 ~~~~l~~~~~~~V~v~Gwv~~~---R----~~------g~~~F~~lrD~~g~iQ~v~~~---~~l~~~~~~v~v~G~v~~ 67 (422)
T 1n9w_A 4 LVRDLKAHVGQEVELLGFLHWR---R----DL------GRIQFLLLRDRSGVVQVVTGG---LKLPLPESALRVRGLVVE 67 (422)
T ss_dssp CGGGGGGCTTSEEEEEEEEEEE---E----EC------SSEEEEEEEETTEEEEEEEES---CCCCCTTCEEEEEEEEEE
T ss_pred EHHHHHhcCCCEEEEEEEEEEE---e----cC------CCeEEEEEEECCEEEEEEEEc---cccCCCCCEEEEEEEEEe
Confidence 345553 123447788888764 2 12 346667899999999998754 4688 9999999998876
Q ss_pred ccC--CeEEEEeCCcEeEEEc
Q 032599 93 MFK--GSMRLAVDKWGRVEVA 111 (137)
Q Consensus 93 ~~~--g~~~L~vg~~g~I~~~ 111 (137)
.-. |.++|.+.+.--+.+.
T Consensus 68 ~~~~~~~~el~~~~~~vl~~~ 88 (422)
T 1n9w_A 68 NAKAPGGLEVQAKEVEVLSPA 88 (422)
T ss_dssp CTTSTTSEEEEEEEEEEEECC
T ss_pred cCCCCccEEEEEeEEEEeccC
Confidence 654 4899999887666655
No 36
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=84.71 E-value=3.6 Score=28.39 Aligned_cols=73 Identities=15% Similarity=0.118 Sum_probs=48.0
Q ss_pred eeccCC--CCCCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEeeCcceEEEEEecCCc--CCCCCCCEEEEeceE
Q 032599 15 KVDQLR--PGTSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDETGMIIFTARNDQV--DLMKEGTTVILRNAK 90 (137)
Q Consensus 15 kI~dL~--p~~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgDeTG~I~ltlW~~~~--~~i~~Gd~v~I~na~ 90 (137)
.+++.+ ++...|.|++.|++--.-. .-++.|.||.|++.+=++.- -.+.+++.|+|.+-+
T Consensus 27 TV~~a~~~~Dd~~V~L~G~Iv~~~~~d----------------~Y~F~D~TG~I~VeId~~~w~g~~v~p~~~Vri~Gev 90 (109)
T 1nnx_A 27 TVESAKSLRDDTWVTLRGNIVERISDD----------------LYVFKDASGTINVDIDHKRWNGVTVTPKDTVEIQGEV 90 (109)
T ss_dssp CHHHHTTSCSSEEEEEEEEEEEEEETT----------------EEEEEETTEEEEEECCGGGSTTCCCCTTSCEEEEEEE
T ss_pred eHHHHhhCcCCCeEEEEEEEEEEeCCC----------------eEEEECCCccEEEEEChhhcCCcccCCCCEEEEEEEE
Confidence 344443 2455678888887632111 13789999999998643321 247999999999998
Q ss_pred EcccCCeEEEEeCC
Q 032599 91 IDMFKGSMRLAVDK 104 (137)
Q Consensus 91 ~~~~~g~~~L~vg~ 104 (137)
=+.|+ ..++.+.+
T Consensus 91 Dkd~~-~~eIdV~~ 103 (109)
T 1nnx_A 91 DKDWN-SVEIDVKQ 103 (109)
T ss_dssp EEETT-EEEEEEEE
T ss_pred CCCCC-ceEEEEEE
Confidence 88775 45665543
No 37
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=84.38 E-value=5.6 Score=34.03 Aligned_cols=75 Identities=12% Similarity=0.086 Sum_probs=56.4
Q ss_pred CCceEEEEEEEcceeeeeccCCCccccceeEEEEEEeeCcceEEEEEecC---------CcCCCCCCCEEEEeceEEccc
Q 032599 24 SGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDETGMIIFTARND---------QVDLMKEGTTVILRNAKIDMF 94 (137)
Q Consensus 24 ~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgDeTG~I~ltlW~~---------~~~~i~~Gd~v~I~na~~~~~ 94 (137)
..|.|.|+|.++ |. - +.+.=+.+-|.+|.|.+.+-.+ .+..+..||+|.+.|-..+.-
T Consensus 65 ~~V~v~Gwv~~~---R~----~------gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~ 131 (504)
T 1e1o_A 65 IEVSVAGRMMTR---RI----M------GKASFVTLQDVGGRIQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLFKTQ 131 (504)
T ss_dssp CEEEEEEEEEEE---EE----E------TTEEEEEEEETTEEEEEEEETTTSSTTHHHHTGGGCCTTCEEEEEEEEEECT
T ss_pred CEEEEEEEEEEE---ec----C------CCcEEEEEEECCeeEEEEEECCcCCHHHHHHHHhcCCCCCEEEEEEEEEecC
Confidence 347788888764 22 1 3456678899999999988543 234578999999999998888
Q ss_pred CCeEEEEeCCcEeEEEc
Q 032599 95 KGSMRLAVDKWGRVEVA 111 (137)
Q Consensus 95 ~g~~~L~vg~~g~I~~~ 111 (137)
.|.++|.+.+.--+.+.
T Consensus 132 ~ge~ei~~~~i~vl~~a 148 (504)
T 1e1o_A 132 TGELSIHCTELRLLTKA 148 (504)
T ss_dssp TCCEEEEEEEEEEEECC
T ss_pred CceEEEEEEEEEEeccc
Confidence 89999999887666654
No 38
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=84.30 E-value=6 Score=34.33 Aligned_cols=89 Identities=9% Similarity=0.073 Sum_probs=64.6
Q ss_pred CCeeeeeccCCCCC--CCceEEEEEEEcceeeeeccCCCccccceeEEEEEEeeCcceEEEEEec-CC--------cCCC
Q 032599 10 KPVFTKVDQLRPGT--SGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDETGMIIFTARN-DQ--------VDLM 78 (137)
Q Consensus 10 ~~~~~kI~dL~p~~--~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgDeTG~I~ltlW~-~~--------~~~i 78 (137)
...+++|.+|.+.. +.|.|.|+|-.+ |. - +.++=+.+-|.+|.|.+++=. +. +..+
T Consensus 47 ~~~~~~i~~l~~~~~g~~V~v~Gwv~~~---R~----~------gkl~Fi~LrD~~g~iQ~v~~~~~~~~~~~~~~~~~l 113 (548)
T 3i7f_A 47 GLKYTEIEELVPAMAEKTVTIRARVQAV---RG----K------GNMVFLFLRKGIYTCQALVMKSETISKEFVQFCQKI 113 (548)
T ss_dssp CCCBCCGGGCSGGGTTCEEEEEEEEEEE---EE----C------SSEEEEEEEETTEEEEEEEECSSSSCHHHHHHHHTC
T ss_pred CCceEEhhhcchhcCCCEEEEEEEEEEE---ec----C------CCeEEEEEEECCeeEEEEEECCCccCHHHHHHHhCC
Confidence 46788999998543 446777777654 22 1 356667889999999988864 21 3357
Q ss_pred CCCCEEEEeceEEccc-------CCeEEEEeCCcEeEEEc
Q 032599 79 KEGTTVILRNAKIDMF-------KGSMRLAVDKWGRVEVA 111 (137)
Q Consensus 79 ~~Gd~v~I~na~~~~~-------~g~~~L~vg~~g~I~~~ 111 (137)
..|++|.|.|-..+.- .|.++|.+.+.--+.+.
T Consensus 114 ~~es~V~V~G~v~~~~~~~~~~~~~~~El~~~~i~vls~a 153 (548)
T 3i7f_A 114 SAESICDITGIVKAVEKPIEKATQQDVEIHVTSIAVVSLA 153 (548)
T ss_dssp CTTEEEEEEEEEEECSSCCTTSSSCSEEEEEEEEEEEECC
T ss_pred CCCCEEEEEEEEEeCCcccccCCCCcEEEEEeEEEEEecC
Confidence 8999999999887653 47899999888777766
No 39
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=84.05 E-value=5.7 Score=33.74 Aligned_cols=90 Identities=11% Similarity=0.089 Sum_probs=61.5
Q ss_pred CCeeeeeccCCCC---CCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEeeCcceEEEEEecC--C---------c
Q 032599 10 KPVFTKVDQLRPG---TSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDETGMIIFTARND--Q---------V 75 (137)
Q Consensus 10 ~~~~~kI~dL~p~---~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgDeTG~I~ltlW~~--~---------~ 75 (137)
...++.+++|.+. ...|.|.|+|-++ | .-| +.+.=+.+-|.+|.|.+++=.+ . +
T Consensus 20 ~~~~~~~~~l~~~~~~g~~V~v~GwV~~~---R----~~g-----~~l~Fi~LrD~~g~iQvv~~~~~~~~~~~~~~~~~ 87 (487)
T 1eov_A 20 GQKRVKFVDLDEAKDSDKEVLFRARVHNT---R----QQG-----ATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWA 87 (487)
T ss_dssp CCCCCCGGGCCTTTTTTCEEEEEEEEEEE---E----ECS-----SSEEEEEEEETTEEEEEEEECCSSSSSCHHHHHHH
T ss_pred ccceeEHHHhcccccCCCEEEEEEEEEEe---e----ccC-----CccEEEEEEECCccEEEEEeccccccccHHHHHHH
Confidence 3456678888754 3447777887664 2 222 2235568889999999887432 1 2
Q ss_pred CCCCCCCEEEEeceEEccc-------CCeEEEEeCCcEeEEEc
Q 032599 76 DLMKEGTTVILRNAKIDMF-------KGSMRLAVDKWGRVEVA 111 (137)
Q Consensus 76 ~~i~~Gd~v~I~na~~~~~-------~g~~~L~vg~~g~I~~~ 111 (137)
..+..||+|.|.|-..+.- .|.++|.+.+.--+.+.
T Consensus 88 ~~l~~e~~V~V~G~v~~~~~~~~~~~~g~~El~~~~i~vl~~a 130 (487)
T 1eov_A 88 GSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISET 130 (487)
T ss_dssp TTCCTTCEEEEEEEEEECSSCCTTSSEEEEEEEEEEEEEEECC
T ss_pred hcCCCCCEEEEEEEEEeCCCCCcCCCCCcEEEEEEEEEEeecc
Confidence 3578999999999877654 26799988877666655
No 40
>2v31_A Ubiquitin-activating enzyme E1 X; ligase, phosphorylation, catalytic domain, heteronuclear first catalytic cysteine half-domain, E1 protein; NMR {Mus musculus}
Probab=83.08 E-value=1.7 Score=30.20 Aligned_cols=61 Identities=18% Similarity=0.288 Sum_probs=43.5
Q ss_pred eeCcceEEEEEecCCcCCCCCCCEEEEeceEEcccCCeEEEEeCCcEeEEEcCCCceEEcCCCCcccc
Q 032599 60 GDETGMIIFTARNDQVDLMKEGTTVILRNAKIDMFKGSMRLAVDKWGRVEVAEPANFTVKEDNNLSLI 127 (137)
Q Consensus 60 gDeTG~I~ltlW~~~~~~i~~Gd~v~I~na~~~~~~g~~~L~vg~~g~I~~~~~~~~~vn~~~n~S~~ 127 (137)
-|+.|.+. +-++..-.++.||.|++.... |..+||=..-=+|+..+++.|++.++..+|..
T Consensus 26 ~~~~g~Vt--~~~~~~H~l~dGD~V~FseV~-----GM~eLN~~~p~~i~v~~p~tf~I~dts~f~~Y 86 (112)
T 2v31_A 26 KDNPGVVT--CLDEARHGFETGDFVSFSEVQ-----GMIQLNGCQPMEIKVLGPYTFSICDTSNFSDY 86 (112)
T ss_dssp CSSSEEEE--ECTTCCCCCCTTCEEEECSEE-----SCCTTGGGCCEEEEECSSSEEEESCCTTSCCC
T ss_pred cCCCcEEE--EecCCccCCcCCCEEEEEeeE-----cchhhCCCcceEEEEcCCCEEEEecccccccc
Confidence 36777654 466666679999999998763 44445444444678888999999888877764
No 41
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=81.91 E-value=9.6 Score=25.72 Aligned_cols=73 Identities=14% Similarity=0.166 Sum_probs=49.0
Q ss_pred CCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEeeC-----cc------e-EEEEEecCCc---CCCCCCCEEEEe
Q 032599 23 TSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDE-----TG------M-IIFTARNDQV---DLMKEGTTVILR 87 (137)
Q Consensus 23 ~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgDe-----TG------~-I~ltlW~~~~---~~i~~Gd~v~I~ 87 (137)
|+.+.|.+++..-.+.+-+. .| ..|++..||-+ .| . |++++|...| ..+..|+.|.|.
T Consensus 2 MN~v~L~GrLt~dPelRyTp--sG-----~~V~~f~LA~~s~~~e~g~~r~~~f~i~vv~wGk~AE~~~~~~kGs~V~Ve 74 (101)
T 3en2_A 2 INRLQLVATLVEREVMRYTP--AG-----VPIVNCLLSYSGQAMEAQAARQVEFSIEALGAGKMASVLDRIAPGTVLECV 74 (101)
T ss_dssp CCCEEEEEEEEEECCCEECT--TC-----CEEEEEEEEEEEEEECC--EEEEEEEEEEEEETHHHHHHTTSCTTCEEEEE
T ss_pred cCEEEEEEEECcCccEEECC--CC-----CEEEEEEEEEcceEecCCCcEeeeEEEEEEEEhHHHHHHhhcCCCCEEEEE
Confidence 67788999999877766543 55 46777766543 23 2 8889999544 346899999999
Q ss_pred ceEEcc-cC-CeEEEEe
Q 032599 88 NAKIDM-FK-GSMRLAV 102 (137)
Q Consensus 88 na~~~~-~~-g~~~L~v 102 (137)
|-.... ++ ..+-|.|
T Consensus 75 GrL~trs~~s~~lvlhi 91 (101)
T 3en2_A 75 GFLARKHRSSKALVFHI 91 (101)
T ss_dssp EEEEECC----CEEEEE
T ss_pred EEEEeCcCCCCeeEEEE
Confidence 987633 33 3555554
No 42
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=81.56 E-value=0.96 Score=40.63 Aligned_cols=72 Identities=21% Similarity=0.229 Sum_probs=52.7
Q ss_pred CeeeeeccCCCCCCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEeeCcceEEEEEecCC--cCCCCC--CCEEEE
Q 032599 11 PVFTKVDQLRPGTSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDETGMIIFTARNDQ--VDLMKE--GTTVIL 86 (137)
Q Consensus 11 ~~~~kI~dL~p~~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgDeTG~I~ltlW~~~--~~~i~~--Gd~v~I 86 (137)
....+|.++.+|.. +.+.++|.+..... . | ...+..+.+.|+||.+.++.++.. ...+++ |..+.+
T Consensus 154 ~~~~~~~~~~~~~~-~~~~~~v~~~~~~~-~----~----~~~~~~~~~~d~~~~~~~~~f~~~~~~~~~~~~~g~~~~~ 223 (780)
T 1gm5_A 154 RKIFKLNDLLPGEK-VTTQGKIVSVETKK-F----Q----NMNILTAVLSDGLVHVPLKWFNQDYLQTYLKQLTGKEVFV 223 (780)
T ss_dssp SCCCCSSCCCSSCC-CEEEECCCCCEEEE-C----S----SCEEEEEEECCSSCCEEEEECSCCTTHHHHHTTCSSCEEE
T ss_pred CcCCcHHHcCCCCE-EEEEEEEEEEEeec-C----C----CCeEEEEEEEECCceEEEEEECcHHHHhhCccCCCCEEEE
Confidence 34567889998864 78999998864332 1 1 146778899999999999988831 234678 999999
Q ss_pred eceEEc
Q 032599 87 RNAKID 92 (137)
Q Consensus 87 ~na~~~ 92 (137)
.|-...
T Consensus 224 ~G~~~~ 229 (780)
T 1gm5_A 224 TGTVKS 229 (780)
T ss_dssp EEEECS
T ss_pred EEEEEE
Confidence 987643
No 43
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=81.56 E-value=7.4 Score=32.46 Aligned_cols=84 Identities=15% Similarity=0.162 Sum_probs=55.4
Q ss_pred eeccCCCC-CCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEeeCcceEEEEEecCCcC-----CCCCCCEEEEec
Q 032599 15 KVDQLRPG-TSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDETGMIIFTARNDQVD-----LMKEGTTVILRN 88 (137)
Q Consensus 15 kI~dL~p~-~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgDeTG~I~ltlW~~~~~-----~i~~Gd~v~I~n 88 (137)
+|+|+... ...|.|.|+|-++ |.-| +.+.=+.+-|.||.+.+++=++..+ .+..|++|.+.|
T Consensus 2 ~i~~~~~~~~~~V~v~Gwv~~~-------R~~G-----k~~~Fi~LrD~~g~iQvv~~~~~~~~~~~~~l~~~~~v~v~G 69 (435)
T 2xgt_A 2 KIRDLVKHRNERVCIKGWIHRM-------RRQG-----KSLMFFILRDGTGFLQVLLMDKLCQTYDALTVNTECTVEIYG 69 (435)
T ss_dssp CGGGGGGGTTSEEEEEEEEEEE-------EECT-----TSEEEEEEECSSCEEEEEEEGGGGSSHHHHHCCTTCEEEEEE
T ss_pred chhhhhhcCCCEEEEEEEEEEe-------cccC-----CCcEEEEEEECCceEEEEECCcchhHHHHhcCCCCCEEEEEE
Confidence 57777542 2347788888764 2222 2456678889999999887532211 378999999999
Q ss_pred eEEc-----ccCCeEEEEeCCcEeEEE
Q 032599 89 AKID-----MFKGSMRLAVDKWGRVEV 110 (137)
Q Consensus 89 a~~~-----~~~g~~~L~vg~~g~I~~ 110 (137)
-..+ ...|.++|.+.+.--+.+
T Consensus 70 ~v~~~~~~~~~~g~~El~~~~~~vl~~ 96 (435)
T 2xgt_A 70 AIKEVPEGKEAPNGHELIADFWKIIGN 96 (435)
T ss_dssp EEEECC------TTEEEEEEEEEEEEC
T ss_pred EEEecCCCcCCCCcEEEEEEEEEEeec
Confidence 8776 335778998877666654
No 44
>3rlo_A Gamma-interferon-inducible protein 16; HIN200/OB fold/DNA binding, DNA binding/cytosolic DNA sensor cytosol, DNA binding protein; 1.80A {Homo sapiens} PDB: 3rnu_A* 3b6y_A 3rln_A
Probab=81.47 E-value=8 Score=29.52 Aligned_cols=87 Identities=17% Similarity=0.204 Sum_probs=58.6
Q ss_pred eeeccCCCCCCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEeeCcceEEEEEecCCcCC-CCCCCEEEEeceEEc
Q 032599 14 TKVDQLRPGTSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDETGMIIFTARNDQVDL-MKEGTTVILRNAKID 92 (137)
Q Consensus 14 ~kI~dL~p~~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgDeTG~I~ltlW~~~~~~-i~~Gd~v~I~na~~~ 92 (137)
.||.+|.....+. +.--+..+...... + ...+ --|-|.||.+.+......... .++||-+++.==..+
T Consensus 107 PKI~~L~~q~~Gt-~V~G~F~v~KK~v~--~------~~~~--YeI~DnTG~MeVvv~G~~~~i~CEeGDKLrL~cFeL~ 175 (204)
T 3rlo_A 107 PKINQLCSQTKGS-FVNGVFEVHKKNVR--G------EFTY--YEIQDNTGKMEVVVHGRLTTINCEEGDKLKLTCFELA 175 (204)
T ss_dssp CCHHHHHTCSSCE-EEEEEEEEEEEEEE--T------TEEE--EEEEETTEEEEEEECGGGGGCCCCTTCEEEEEEEEEE
T ss_pred cchhhhhcCCCCC-EEeEEEEEEEEEec--c------ceEE--EEEecCCCcEEEEEeccCcccccCCCCeeEEEEEEEe
Confidence 4678887777763 44444444433221 1 1233 367899999999777755444 589999999877776
Q ss_pred cc-CCeEEEEeCCcEeEEEc
Q 032599 93 MF-KGSMRLAVDKWGRVEVA 111 (137)
Q Consensus 93 ~~-~g~~~L~vg~~g~I~~~ 111 (137)
.. .+.++|..+..+-|...
T Consensus 176 ~~~~~~~qL~s~~HSfikVi 195 (204)
T 3rlo_A 176 PKSGNTGELRSVIHSHIKVI 195 (204)
T ss_dssp CCTTTTCEEEEEEEEEEEEE
T ss_pred cccCCceeEEEecceeEEEE
Confidence 54 47899999998877654
No 45
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=81.28 E-value=7.2 Score=33.45 Aligned_cols=76 Identities=8% Similarity=0.055 Sum_probs=57.1
Q ss_pred CCceEEEEEEEcceeeeeccCCCccccceeEEEEEEeeCcceEEEEEecCCc----------CCCCCCCEEEEeceEEcc
Q 032599 24 SGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDETGMIIFTARNDQV----------DLMKEGTTVILRNAKIDM 93 (137)
Q Consensus 24 ~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgDeTG~I~ltlW~~~~----------~~i~~Gd~v~I~na~~~~ 93 (137)
..|.|.|+|.++ | .-| ..++=+.|-|.+|.|.+.+-.+.. ..+..||+|.+.|...+.
T Consensus 56 ~~V~v~Grv~~~---R----~~g-----kk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t 123 (521)
T 3bju_A 56 ITLKVAGRIHAK---R----ASG-----GKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKT 123 (521)
T ss_dssp CCEEEEEEEEEE---E----ESS-----SSEEEEEEEETTEEEEEEEEGGGSSCHHHHHHHHHHCCTTCEEEEEEEEEEC
T ss_pred cEEEEEEEEEEE---e----cCC-----CCcEEEEEEECCEEEEEEEECCccCCHHHHHHHHhcCCCCCEEEEEEEEEec
Confidence 457888888774 2 222 156667899999999998864321 247899999999999888
Q ss_pred cCCeEEEEeCCcEeEEEc
Q 032599 94 FKGSMRLAVDKWGRVEVA 111 (137)
Q Consensus 94 ~~g~~~L~vg~~g~I~~~ 111 (137)
-.|.++|.+.+.--+.+.
T Consensus 124 ~~ge~ei~~~~i~~l~~~ 141 (521)
T 3bju_A 124 KKGELSIIPYEITLLSPC 141 (521)
T ss_dssp TTCCEEEEEEEEEEEECC
T ss_pred CCCCEEEEEeEEEEeecC
Confidence 889999999887666654
No 46
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=81.21 E-value=2.2 Score=30.81 Aligned_cols=65 Identities=11% Similarity=0.084 Sum_probs=45.1
Q ss_pred CCCCCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEe-eC------------cceEEEEEecCCcC----CCCCCC
Q 032599 20 RPGTSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVG-DE------------TGMIIFTARNDQVD----LMKEGT 82 (137)
Q Consensus 20 ~p~~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~Vg-De------------TG~I~ltlW~~~~~----~i~~Gd 82 (137)
-|.++.+.|.+++..-.+.+.+. +| ..+++..|| +. |--+++++|..+|+ .++.|+
T Consensus 13 ~~~~N~V~LiGrL~~DPelr~t~--~G-----~~va~f~lAv~~r~~~~~~Ge~~~t~~~~v~~wg~~Ae~~~~~l~KG~ 85 (153)
T 1z9f_A 13 MSFFNKIILIGRLVRDPEERYTL--SG-----TPVTTFTIAVDRVPRKNAPDDAQTTDFFRIVTFGRLAEFARTYLTKGR 85 (153)
T ss_dssp CSCCCCEEEEEEESSCCEEEECC---------CEEEEEEEEEEC-----------CEEEEEEEEEHHHHHHHHHHCCTTC
T ss_pred ccceeEEEEEEEECCCCEEEECC--CC-----CEEEEEEEEEcCCccccCCCCEeeeEEEEEEEECHHHHHHHhhCCCCC
Confidence 36778889999988766666542 44 366666655 21 44589999986553 368999
Q ss_pred EEEEeceEE
Q 032599 83 TVILRNAKI 91 (137)
Q Consensus 83 ~v~I~na~~ 91 (137)
.|.|.|-..
T Consensus 86 ~V~VeGrL~ 94 (153)
T 1z9f_A 86 LVLVEGEMR 94 (153)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEE
Confidence 999998865
No 47
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=80.97 E-value=7.8 Score=32.33 Aligned_cols=83 Identities=10% Similarity=0.035 Sum_probs=58.5
Q ss_pred eccCCCC--CCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEeeCcceEEEEEecC-----CcCCCCCCCEEEEec
Q 032599 16 VDQLRPG--TSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDETGMIIFTARND-----QVDLMKEGTTVILRN 88 (137)
Q Consensus 16 I~dL~p~--~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgDeTG~I~ltlW~~-----~~~~i~~Gd~v~I~n 88 (137)
+++|.+. ...|.|.|+|-++ |. - +.+.=+.+-|.+|.|.+++-.+ .+..+..||+|.+.|
T Consensus 7 ~~~l~~~~~~~~V~v~Gwv~~~---R~----~------g~~~F~~lrD~~g~iQ~v~~~~~~~~~~~~~l~~~~~v~v~G 73 (429)
T 1wyd_A 7 IADVTPEYDGKEVIWAGWVHLL---RD----L------GGKKFIILRDKTGLGQVVVDKNSSAFGISQELTQESVIQVRG 73 (429)
T ss_dssp TTTCCGGGTTCEEEEEEEEEEE---EE----E------TTEEEEEEEETTEEEEEEECTTSTTHHHHTTCCTTCEEEEEE
T ss_pred HHHhhHHhCCCEEEEEEEEEEE---ec----C------CCeEEEEEEECCeeEEEEEeCChHHHHHHHhCCCCCEEEEEE
Confidence 5566432 3447788888764 22 1 3466678899999999988542 124578999999999
Q ss_pred eEEcccCC--eEEEEeCCcEeEEEc
Q 032599 89 AKIDMFKG--SMRLAVDKWGRVEVA 111 (137)
Q Consensus 89 a~~~~~~g--~~~L~vg~~g~I~~~ 111 (137)
...+...+ .++|.+.+.--+.+.
T Consensus 74 ~v~~~~~~~~~~el~~~~~~vl~~~ 98 (429)
T 1wyd_A 74 IVKADKRAPRGIELHAEEITLLSKA 98 (429)
T ss_dssp EEEECSSSGGGEEEEEEEEEEEECC
T ss_pred EEEecCCCCccEEEEEeEEEEeccC
Confidence 88766554 899999887666655
No 48
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=80.89 E-value=10 Score=25.45 Aligned_cols=73 Identities=11% Similarity=0.091 Sum_probs=51.1
Q ss_pred CCceEEEEEEEcceeeeeccCCCccccceeEEEEEEee-----Ccc------e-EEEEEecCC--cCCCCCCCEEEEece
Q 032599 24 SGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGD-----ETG------M-IIFTARNDQ--VDLMKEGTTVILRNA 89 (137)
Q Consensus 24 ~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgD-----eTG------~-I~ltlW~~~--~~~i~~Gd~v~I~na 89 (137)
+.+.|.+++..-.+.+.+. +| ..|++..||= ++| . +++++|... +..++.|+.|.|.+-
T Consensus 8 Nkv~LiG~L~~dPelRytp--~G-----~~v~~f~lA~~~~~~~~g~~~~~~~~i~vv~~gk~Ae~~~l~KG~~v~veGr 80 (103)
T 3k8a_A 8 NLVSLAALIEKAFPIRYTP--AG-----IPVLDIILKHESWQEENGQQCLVQLEIPARILGRQAEEWQYRQGDCATVEGF 80 (103)
T ss_dssp EEEEEEEEEEEECCCEECT--TS-----CEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEHHHHHHSTTCTTCEEEEEEE
T ss_pred cEEEEEEEECCCCceEECC--CC-----CEEEEEEEEEcccCccCCCEEEeeEEEEEEEEhHHhhhhccCCCCEEEEEEE
Confidence 5578899998877776553 55 4678877763 333 3 899999844 445789999999998
Q ss_pred EE-cccCC-eEEEEeC
Q 032599 90 KI-DMFKG-SMRLAVD 103 (137)
Q Consensus 90 ~~-~~~~g-~~~L~vg 103 (137)
.. +-|++ .+.|++.
T Consensus 81 L~~rs~~~~~lvlhi~ 96 (103)
T 3k8a_A 81 LAQKSRRSLMPMLRIQ 96 (103)
T ss_dssp EEESSSSCCCEEEEEE
T ss_pred EEECccCCccEEEEEE
Confidence 76 44554 5555543
No 49
>3u4v_A Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 1.80A {Tetrahymena thermophila}
Probab=80.46 E-value=11 Score=25.40 Aligned_cols=81 Identities=16% Similarity=0.169 Sum_probs=55.5
Q ss_pred eeccCCCCCCCc--eEEEEEEEcceeeeeccCCCccccceeEEEEEEeeC-cceEEEEEecC--C-cCCCCCCCEEEEec
Q 032599 15 KVDQLRPGTSGH--TLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDE-TGMIIFTARND--Q-VDLMKEGTTVILRN 88 (137)
Q Consensus 15 kI~dL~p~~~~v--~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgDe-TG~I~ltlW~~--~-~~~i~~Gd~v~I~n 88 (137)
-|++|.-|.+.+ .+.++|+-.. .+|..+.. .+..-+..-|. .-.|.|++|.. + ...++.|.-+.+.+
T Consensus 17 lisqlqvgknrfsfkfegrvvyks--stfqnqqd-----skyffitaqdannqeinmsfwqkvdqsyqtlkvgqyyyfig 89 (117)
T 3u4v_A 17 LISQLQVGKNRFSFKFEGRVVYKS--STFQNQQD-----SKYFFITAQDANNQEINMSFWQKVDQSYQTLKVGQYYYFIG 89 (117)
T ss_dssp CGGGCCTTCCTTSCEEEEEEEEEC--CCEECTTS-----CEEEEEEEECTTSCEEEEEEESSTHHHHTTCCTTCEEEEES
T ss_pred ehhhhhcccceeeEEeeeEEEEee--cccccccc-----ccEEEEEeecCCCceechHHHHHhhhhhheEeeceEEEEEc
Confidence 378888776655 5667776543 44543332 23333333443 45899999973 2 34579999999999
Q ss_pred eEEcccCCeEEEEe
Q 032599 89 AKIDMFKGSMRLAV 102 (137)
Q Consensus 89 a~~~~~~g~~~L~v 102 (137)
+-++.|++.++|..
T Consensus 90 gevkqfknnlelkf 103 (117)
T 3u4v_A 90 GEVKQFKNNLELKF 103 (117)
T ss_dssp CEEEEETTEEEEEE
T ss_pred cchhhhccceEEEE
Confidence 99999999998865
No 50
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=80.34 E-value=4.4 Score=28.07 Aligned_cols=75 Identities=17% Similarity=0.176 Sum_probs=50.2
Q ss_pred CCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEeeC-----cce-------EEEEEecCCc---CCCCCCCEEEEe
Q 032599 23 TSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDE-----TGM-------IIFTARNDQV---DLMKEGTTVILR 87 (137)
Q Consensus 23 ~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgDe-----TG~-------I~ltlW~~~~---~~i~~Gd~v~I~ 87 (137)
|+.+-|.+++..-.+.|-+. .| ..|++..||-+ .|. |++++|...| ..+..|+.|.|.
T Consensus 1 MNkviL~GrL~~dPelRyTp--sG-----~~V~~f~LA~~~~~~~~g~~r~~~~~i~vv~~Gk~AE~~~~l~kGs~V~Ve 73 (115)
T 3fhw_A 1 MNTLELSARVLECGAMRHTP--AG-----LPALELLLVHESEVVEAGHPRRVELTISAVALGDLALLLADTPLGTEMQVQ 73 (115)
T ss_dssp CEEEEEEEEEEEECCCEECT--TS-----CEEEEEEEEEEEECCCCC--CEEEEEEEEEEETHHHHHHTTCCTTCEEEEE
T ss_pred CCEEEEEEEECcCcceEECC--CC-----CEEEEEEEEEcceeecCCCeeeeeEEEEEEEEhHHHHhhhccCCCCEEEEE
Confidence 45577888888877766543 45 46777777643 343 8999999654 457899999999
Q ss_pred ceEEccc-CC-eEEEEeCC
Q 032599 88 NAKIDMF-KG-SMRLAVDK 104 (137)
Q Consensus 88 na~~~~~-~g-~~~L~vg~ 104 (137)
|-..... +| .++|.+.+
T Consensus 74 GrL~trs~~G~kl~l~a~~ 92 (115)
T 3fhw_A 74 GFLAPARKDSVKVKLHLQQ 92 (115)
T ss_dssp EEEEESSTTCSSEEEEEEE
T ss_pred EEEEECCCCCCEEEEEEEE
Confidence 9876432 22 45555443
No 51
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=79.59 E-value=3 Score=28.28 Aligned_cols=64 Identities=11% Similarity=0.067 Sum_probs=44.2
Q ss_pred CCCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEee-----------CcceEEEEEecCCcC----CCCCCCEEEE
Q 032599 22 GTSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGD-----------ETGMIIFTARNDQVD----LMKEGTTVIL 86 (137)
Q Consensus 22 ~~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgD-----------eTG~I~ltlW~~~~~----~i~~Gd~v~I 86 (137)
.++.+.|.+++..-.+.+.+. +| ..+++..||= +|--+++++|..+++ .++.|+.|.|
T Consensus 4 mmN~v~l~G~l~~dpe~r~t~--~G-----~~v~~f~la~~~~~~~~~g~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V 76 (116)
T 3vdy_A 4 MFNQVMLVGRLTKDPDLRYTS--AG-----AAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGV 76 (116)
T ss_dssp CCCCEEEEEEESSCCEEEECT--TS-----CEEEEEEEEEECSSCCSSSCCCEEEEEEEEEHHHHHHHHHHCCTTCEEEE
T ss_pred eEeEEEEEEEEccCcEEEECC--CC-----CEEEEEEEEEeccccCCCCccccEEEEEEEECHHHHHHHHhCCCCCEEEE
Confidence 466788888888766665542 44 3566655542 234599999997653 3689999999
Q ss_pred eceEEc
Q 032599 87 RNAKID 92 (137)
Q Consensus 87 ~na~~~ 92 (137)
.+-...
T Consensus 77 ~G~l~~ 82 (116)
T 3vdy_A 77 SGRIQT 82 (116)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 987763
No 52
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=78.95 E-value=1.9 Score=30.68 Aligned_cols=63 Identities=11% Similarity=0.092 Sum_probs=43.1
Q ss_pred CCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEe--------------eCcceEEEEEecCCcC----CCCCCCEE
Q 032599 23 TSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVG--------------DETGMIIFTARNDQVD----LMKEGTTV 84 (137)
Q Consensus 23 ~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~Vg--------------DeTG~I~ltlW~~~~~----~i~~Gd~v 84 (137)
++.+.|.++|..-.+.+.+. +| ..++...|| |+|--+++++|...++ .++.|+.|
T Consensus 5 mN~v~L~GrL~~dPelr~t~--~G-----~~v~~f~lA~~~~~~~~~~Ge~~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V 77 (145)
T 1qvc_A 5 VNKVILVGNLGQDPEVRYMP--NG-----GAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQV 77 (145)
T ss_dssp EEEEEEEEEESSCCEEECCS--SS-----CCEEEEEEEECCCCSCCSSSSCCCCCEEEEEEEETHHHHHHHHHCCTTCEE
T ss_pred eEEEEEEEEeCCCCEEEECC--CC-----CEEEEEEEEEcCCcccccCCcEecccEEEEEEEehHHHHHHHHhcCCCCEE
Confidence 45577888877655555442 44 356666664 1344699999996554 36899999
Q ss_pred EEeceEEc
Q 032599 85 ILRNAKID 92 (137)
Q Consensus 85 ~I~na~~~ 92 (137)
.|.+-...
T Consensus 78 ~V~G~L~~ 85 (145)
T 1qvc_A 78 YIEGQLRT 85 (145)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEe
Confidence 99987653
No 53
>3u58_A Tetrahymena TEB1 AB; tetrahymena, telomerase, TEB1, processivity factor, DNA BIND protein-DNA complex; HET: DNA; 2.61A {Tetrahymena thermophila}
Probab=78.08 E-value=11 Score=27.69 Aligned_cols=87 Identities=17% Similarity=0.194 Sum_probs=57.6
Q ss_pred CCCCeeeeeccCCCCCCCc--eEEEEEEEcceeeeeccCCCccccceeEEEEEEeeC-cceEEEEEecC--C-cCCCCCC
Q 032599 8 LRKPVFTKVDQLRPGTSGH--TLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDE-TGMIIFTARND--Q-VDLMKEG 81 (137)
Q Consensus 8 l~~~~~~kI~dL~p~~~~v--~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgDe-TG~I~ltlW~~--~-~~~i~~G 81 (137)
|.|.++ -|++|.-|.+.+ .+.++|+- ...+|..+..+ +..-+..-|. .-.|.+++|.. + ...++.|
T Consensus 7 lskqtl-lisqlqvgknrfsfkfegrvvy--ksstfqnqqds-----kyffitaqdannqeinlsfwqkvdqsyqtlkvg 78 (213)
T 3u58_A 7 LSKQTL-LISQLQVGKNRFSFKFEGRVVY--KSSTFQNQQDS-----KYFFITAQDANNQEINLSFWQKVDQSYQTLKVG 78 (213)
T ss_dssp TTSEEE-CGGGCCTTSCTTSEEEEEEEEE--ECCCBCCSTTC-----CBEEEEEECTTSCEEEEEECSSHHHHHHHCCTT
T ss_pred hhhhhh-hhhhhhhccceeeEEeeeEEEE--eeccccccccc-----cEEEEEeecCCCceechHHHHHhhhhhheeeec
Confidence 444333 378888876665 45667764 44455443333 2222233343 45899999973 2 2347999
Q ss_pred CEEEEeceEEcccCCeEEEEe
Q 032599 82 TTVILRNAKIDMFKGSMRLAV 102 (137)
Q Consensus 82 d~v~I~na~~~~~~g~~~L~v 102 (137)
.-+.+.++-++.|++.++|..
T Consensus 79 qyyyfiggevkqfknnlelkf 99 (213)
T 3u58_A 79 QYYYFIGGEVKQFKNNLELKF 99 (213)
T ss_dssp CEEEEESCEEEECSSSEEEEE
T ss_pred eEEEEEcccHhhhccceEEEE
Confidence 999999999999999888876
No 54
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=77.14 E-value=7.7 Score=32.40 Aligned_cols=84 Identities=12% Similarity=0.156 Sum_probs=58.7
Q ss_pred eeccCCCC--CCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEeeCcceEEEEEecC--------CcCCCCCCCEE
Q 032599 15 KVDQLRPG--TSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDETGMIIFTARND--------QVDLMKEGTTV 84 (137)
Q Consensus 15 kI~dL~p~--~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgDeTG~I~ltlW~~--------~~~~i~~Gd~v 84 (137)
.+++|.+. ...|.|.|+|-++ |. - +.+.=+.+-|.+|.|.+++-.+ .+..+..||+|
T Consensus 6 ~~~~l~~~~~~~~V~v~G~v~~~---R~----~------g~~~F~~lrD~~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~v 72 (434)
T 1x54_A 6 YCQEVKPELDGKKVRLAGWVYTN---MR----V------GKKIFLWIRDSTGIVQAVVAKNVVGEETFEKAKKLGRESSV 72 (434)
T ss_dssp CGGGCCGGGTTCEEEEEEEEEEE---EE----E------TTEEEEEEEETTEEEEEEECHHHHCHHHHHHHHTCCTTCEE
T ss_pred EHHHhhHHhCCCEEEEEEEEEEE---ec----C------CCeEEEEEEECCEEEEEEEECCcCCHHHHHHHhcCCCCCEE
Confidence 35666542 3447788888764 22 1 3466678899999999988532 12457899999
Q ss_pred EEeceEEcccCC--eEEEEeCCcEeEEEc
Q 032599 85 ILRNAKIDMFKG--SMRLAVDKWGRVEVA 111 (137)
Q Consensus 85 ~I~na~~~~~~g--~~~L~vg~~g~I~~~ 111 (137)
.+.|...+...+ .++|.+.+.--+.+.
T Consensus 73 ~v~G~v~~~~~~~~~~el~~~~~~vl~~~ 101 (434)
T 1x54_A 73 IVEGIVKADERAPGGAEVHVEKLEVIQAV 101 (434)
T ss_dssp EEEEEEEECTTSGGGEEEEEEEEEEEECC
T ss_pred EEEEEEEecCCCCccEEEEEeEEEEeecC
Confidence 999988776554 899998877666554
No 55
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=76.49 E-value=3.6 Score=28.84 Aligned_cols=63 Identities=10% Similarity=0.058 Sum_probs=41.9
Q ss_pred CCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEe------e-------CcceEEEEEecCCcC----CCCCCCEEE
Q 032599 23 TSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVG------D-------ETGMIIFTARNDQVD----LMKEGTTVI 85 (137)
Q Consensus 23 ~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~Vg------D-------eTG~I~ltlW~~~~~----~i~~Gd~v~ 85 (137)
++.+.|.+++..-.+.+.+. +| ..+++..|| | +|--+++++|...|+ .++.|+.|.
T Consensus 2 mN~V~L~GrL~~dPelr~t~--~G-----~~v~~f~lA~~~~~~~~~G~~~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~ 74 (134)
T 2vw9_A 2 FNKVIMVGRLTRNVELKYLP--SG-----SAAATIGLATSRRFKKQDGTLGEEVCFIDARLFGRTAEIANQYLSKGSSVL 74 (134)
T ss_dssp CCCEEEEEEESSCCEEEECT--TS-----CEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEHHHHHHHHHHCCTTCEEE
T ss_pred eeEEEEEEEECCCCEEEECC--CC-----CEEEEEEEEEeCCeECCCCCCccccEEEEEEEEcHHHHHHHHhCCCCCEEE
Confidence 45677888877655555442 44 355555443 2 344699999996553 368999999
Q ss_pred EeceEEc
Q 032599 86 LRNAKID 92 (137)
Q Consensus 86 I~na~~~ 92 (137)
|.+-...
T Consensus 75 V~G~L~~ 81 (134)
T 2vw9_A 75 IEGRLTY 81 (134)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 9987653
No 56
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=76.05 E-value=9.7 Score=32.85 Aligned_cols=75 Identities=15% Similarity=0.111 Sum_probs=55.4
Q ss_pred CCceEEEEEEEcceeeeeccCCCccccceeEEEEEEeeCcceEEEEEecCC--------cCCCCCCCEEEEeceEEcccC
Q 032599 24 SGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDETGMIIFTARNDQ--------VDLMKEGTTVILRNAKIDMFK 95 (137)
Q Consensus 24 ~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgDeTG~I~ltlW~~~--------~~~i~~Gd~v~I~na~~~~~~ 95 (137)
..|.|.|+|-++ |. - +++.=+.|-|.||.|.+.+=.+. +..+..||+|.+.|-..+.-.
T Consensus 87 ~~V~v~GwV~~~---R~----~------Gk~~Fi~LrD~sg~iQvv~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~~ 153 (529)
T 4ex5_A 87 LEVAIAGRMMLK---RV----M------GKASFATVQDGSGQIQFFVTPADVGAETYDAFKKWDLGDIVAARGVLFRTNK 153 (529)
T ss_dssp CEEEEEEEEEEE---EE----E------TTEEEEEEECSSCEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEEECTT
T ss_pred cEEEEEEEEEee---ec----C------CCeEEEEEEeCCeeEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEEcCC
Confidence 347777777664 22 1 34566788999999998875432 235789999999999888888
Q ss_pred CeEEEEeCCcEeEEEc
Q 032599 96 GSMRLAVDKWGRVEVA 111 (137)
Q Consensus 96 g~~~L~vg~~g~I~~~ 111 (137)
|.++|.+.+.--+.+.
T Consensus 154 gelel~~~~i~vLs~a 169 (529)
T 4ex5_A 154 GELSVKCTQLRLLAKA 169 (529)
T ss_dssp SCEEEEEEEEEEEECC
T ss_pred CcEEEEEEEEEEEecC
Confidence 9999998877666555
No 57
>2oq0_A Gamma-interferon-inducible protein IFI-16; OB folds, beta-barrels, structural genomics, PSI-2, protein initiative; 2.00A {Homo sapiens} SCOP: b.40.16.1 b.40.16.1
Probab=75.89 E-value=24 Score=26.92 Aligned_cols=77 Identities=16% Similarity=0.173 Sum_probs=62.6
Q ss_pred EEEEEEEcceeeeeccCC-CccccceeEEEEEEeeCcceEEEEEecCC-cCCCCCCCEEEEeceEEcccCCeEEEEeCCc
Q 032599 28 LTVKVVSTKMVLQKGRGD-GTQVRQMRIAECLVGDETGMIIFTARNDQ-VDLMKEGTTVILRNAKIDMFKGSMRLAVDKW 105 (137)
Q Consensus 28 l~~kVl~~~~~~~~~R~D-Gs~~~~~~v~~~~VgDeTG~I~ltlW~~~-~~~i~~Gd~v~I~na~~~~~~g~~~L~vg~~ 105 (137)
+.+.||...+|.+..+.. | ...|..+.||-+|--.++-..+.+ -+.+.+..+|.|.|-+- ++|.++ +.+.
T Consensus 18 ~~VmVLkat~pF~ye~~E~~----k~~MFHATVATetqfF~VKVfn~~LkeKF~~k~iI~ISdY~~--~~g~lE--v~~~ 89 (206)
T 2oq0_A 18 VIVKVLSTTKPFEYETPEME----KKIMFHATVATQTQFFHVKVLNTSLKEKFNGKKIIIISDYLE--YDSLLE--VNEE 89 (206)
T ss_dssp EEEEEEEECCCEEEECCC------EEEEEEEEEECSSCEEEEEECCGGGGGGGSSSSEEEEESBEE--ETTEEE--ECTT
T ss_pred eEEEEEecccceEEechhcc----cceeEEEEEeecceeEEEEEeechhhhhcccCceEEEEeecc--ccceee--eecc
Confidence 789999999998876554 4 357999999999999999999954 45589999999999884 477555 5788
Q ss_pred EeEEEcC
Q 032599 106 GRVEVAE 112 (137)
Q Consensus 106 g~I~~~~ 112 (137)
+.|..++
T Consensus 90 ssVse~~ 96 (206)
T 2oq0_A 90 STVSEAG 96 (206)
T ss_dssp CEEEECC
T ss_pred ceEEecc
Confidence 8998886
No 58
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=75.75 E-value=11 Score=32.73 Aligned_cols=90 Identities=13% Similarity=0.061 Sum_probs=59.9
Q ss_pred eccCCCC--CCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEeeCcceEEEEEecC-----CcCCCCCCCEEEEec
Q 032599 16 VDQLRPG--TSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDETGMIIFTARND-----QVDLMKEGTTVILRN 88 (137)
Q Consensus 16 I~dL~p~--~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgDeTG~I~ltlW~~-----~~~~i~~Gd~v~I~n 88 (137)
+.+|... ...|.|.|.|-.+ | .- +.+.=+.+-|.+|.|.+++-.+ .+..+..|++|.|.|
T Consensus 7 ~~~l~~~~~g~~V~l~GwV~~~---R----~~------G~~~Fi~LrD~~g~iQvv~~~~~~~~~~~~~l~~e~~V~V~G 73 (580)
T 1l0w_A 7 AGSLRETHVGEEVVLEGWVNRR---R----DL------GGLIFLDLRDREGLVQLVAHPASPAYATAERVRPEWVVRAKG 73 (580)
T ss_dssp GGGCCGGGTTCEEEEEEEEEEE---E----EC------SSCEEEEEEETTEEEEEEECTTSTTHHHHTTCCTTCEEEEEE
T ss_pred HHHhHHHhCCCEEEEEEEEEEE---e----cC------CCeEEEEEEECCeeEEEEEeCChhHHHHHhcCCCCcEEEEEE
Confidence 4455432 3347777777664 2 11 3455567889999999887432 234578999999999
Q ss_pred eEEcc-------cCCeEEEEeCCcEeEEEcCCCceEE
Q 032599 89 AKIDM-------FKGSMRLAVDKWGRVEVAEPANFTV 118 (137)
Q Consensus 89 a~~~~-------~~g~~~L~vg~~g~I~~~~~~~~~v 118 (137)
-..+. -.|.++|.+.+.--+.+..+..+.+
T Consensus 74 ~v~~~~~~~~~~~~ge~Ei~~~~i~vl~~a~~lP~~i 110 (580)
T 1l0w_A 74 LVRLRPEPNPRLATGRVEVELSALEVLAEAKTPPFPV 110 (580)
T ss_dssp EEEECSSCCTTSTTTTEEEEEEEEEEEECCCCCSSCC
T ss_pred EEEcCCCcCccCCCccEEEEEeEEEEeccCcCCCCCc
Confidence 87754 4578999998887766654333433
No 59
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=75.10 E-value=12 Score=26.40 Aligned_cols=62 Identities=8% Similarity=0.118 Sum_probs=45.0
Q ss_pred CCceEEEEEEEcceeeeeccCCCccccceeEEEEEEeeC-----cc-------eEEEEEecCCcCC----CCCCCEEEEe
Q 032599 24 SGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDE-----TG-------MIIFTARNDQVDL----MKEGTTVILR 87 (137)
Q Consensus 24 ~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgDe-----TG-------~I~ltlW~~~~~~----i~~Gd~v~I~ 87 (137)
+.|.|.+++..-.+.|-+. .| ..|++..||-+ +| -|++++|...|+. ++.|+-|.|.
T Consensus 20 NkViLiGrL~~DPElRyTp--sG-----~~Va~ftLA~~~~~~~~G~~~~~~~~i~vv~wGk~AE~~~~yl~KGs~V~Ve 92 (134)
T 1v1q_A 20 NRLVLSGTVCRAPLRKVSP--SG-----IPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQ 92 (134)
T ss_dssp EEEEEEEEEEEEEEEEECT--TC-----CEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESTGGGGGGTTCCTTCEEEEE
T ss_pred eEEEEEEEECcCCceEECC--CC-----CEEEEEEEEEeCcCcCCCCEecceEEEEEEEEhHHHHHHHHhcCCCCEEEEE
Confidence 5688999988877766543 55 46777777543 34 2899999876554 5789999999
Q ss_pred ceEEc
Q 032599 88 NAKID 92 (137)
Q Consensus 88 na~~~ 92 (137)
+-...
T Consensus 93 GrL~t 97 (134)
T 1v1q_A 93 GFISC 97 (134)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 87653
No 60
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=74.82 E-value=3.9 Score=29.89 Aligned_cols=63 Identities=13% Similarity=0.188 Sum_probs=44.1
Q ss_pred CCCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEee---------------CcceEEEEEecCCcC----CCCCCC
Q 032599 22 GTSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGD---------------ETGMIIFTARNDQVD----LMKEGT 82 (137)
Q Consensus 22 ~~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgD---------------eTG~I~ltlW~~~~~----~i~~Gd 82 (137)
+++.+.|+++|..--+.+.+. +| ..|++..||= +|--+++++|..+++ .++.|+
T Consensus 3 ~~N~V~LiG~L~~dPelr~t~--~G-----~~va~f~lAv~~~~~~~~~Ge~~d~~t~~~~v~~wg~~Ae~~~~~l~KG~ 75 (168)
T 3afp_A 3 GDTTITIVGNLTADPELRFTS--SG-----AAVVNFTVASTPRIYDRQSGEWKDGEALFLRCNIWREAAENVAESLTRGA 75 (168)
T ss_dssp CCCEEEEEEEESSSCCCEECT--TS-----CEEEEEEEEECC--------CCCCCCCEEEEEEEEHHHHHHHHHHCCTTC
T ss_pred ccCEEEEEEEECCCCEEEECC--CC-----CEEEEEEEEEccccccccCCcEecCCcEEEEEEEehHHHHHHHHhCCCCC
Confidence 356678888887766666543 44 4667666651 244699999986553 468999
Q ss_pred EEEEeceEE
Q 032599 83 TVILRNAKI 91 (137)
Q Consensus 83 ~v~I~na~~ 91 (137)
.|.|.+-..
T Consensus 76 ~V~VeGrL~ 84 (168)
T 3afp_A 76 RVIVTGRLK 84 (168)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEE
Confidence 999998764
No 61
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=74.80 E-value=8.1 Score=32.89 Aligned_cols=75 Identities=16% Similarity=0.176 Sum_probs=56.1
Q ss_pred CCceEEEEEEEcceeeeeccCCCccccceeEEEEEEeeCcceEEEEEecC--------CcCCCCCCCEEEEeceEEcccC
Q 032599 24 SGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDETGMIIFTARND--------QVDLMKEGTTVILRNAKIDMFK 95 (137)
Q Consensus 24 ~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgDeTG~I~ltlW~~--------~~~~i~~Gd~v~I~na~~~~~~ 95 (137)
..|.|.|+|..+ |. - +.+.=+.+-|.+|.|.+.+-.+ .+..+..||+|.+.|...+.-.
T Consensus 57 ~~V~v~Gwv~~~---R~----~------gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~l~~g~~v~V~G~v~~~~~ 123 (493)
T 3a74_A 57 IEVAVAGRIMTK---RG----M------GKAGFAHIQDVTGQIQIYVRQDDVGEQQYELFKISDLGDIVGVRGTMFKTKV 123 (493)
T ss_dssp CEEEEEEEEEEE---EE----E------TTEEEEEEEETTEEEEEEEEHHHHHHHHHHHHHHCCTTCEEEEEEEEEECTT
T ss_pred CEEEEEEEEEEE---ec----C------CCcEEEEEEECCEeEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEeCCC
Confidence 347788888764 21 1 3456678899999999988532 1234789999999999988888
Q ss_pred CeEEEEeCCcEeEEEc
Q 032599 96 GSMRLAVDKWGRVEVA 111 (137)
Q Consensus 96 g~~~L~vg~~g~I~~~ 111 (137)
|.++|.+.+.--+.+.
T Consensus 124 ge~ei~~~~i~vl~~~ 139 (493)
T 3a74_A 124 GELSIKVSSYEFLTKA 139 (493)
T ss_dssp CCEEEEEEEEEEEECC
T ss_pred CcEEEEEEEEEEcccc
Confidence 9999999887666554
No 62
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=73.41 E-value=3 Score=28.73 Aligned_cols=62 Identities=15% Similarity=0.154 Sum_probs=41.6
Q ss_pred CCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEe--------------eCcceEEEEEec-CCcC----CCCCCCE
Q 032599 23 TSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVG--------------DETGMIIFTARN-DQVD----LMKEGTT 83 (137)
Q Consensus 23 ~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~Vg--------------DeTG~I~ltlW~-~~~~----~i~~Gd~ 83 (137)
++.+.|.+++..-.+.+.+. +| ..++...|| |+|--+++++|. .+++ .++.|+.
T Consensus 6 ~N~v~l~Grl~~dpelr~t~--~G-----~~v~~f~lA~~~~~~~~~~G~~~~~t~~~~v~~wg~~~Ae~~~~~l~KG~~ 78 (124)
T 3ulp_A 6 LNKIMLIGRVGCEPDIKILN--GG-----DKVATFSLATNEFWRDRNTNELKSKTDWHRIVVYDQNIVDLIDKYLRKGRR 78 (124)
T ss_dssp EEEEEEEEEECSCCEEEECT--TS-----CEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEECCHHHHHHHHHHCCTTCE
T ss_pred ceEEEEEEEECCCcEEEECC--CC-----CEEEEEEEEEccceecccCCcEecccEEEEEEEEEchHHHHHHhhcCCCCE
Confidence 45577888877765555542 44 345555443 234459999999 5554 3689999
Q ss_pred EEEeceEE
Q 032599 84 VILRNAKI 91 (137)
Q Consensus 84 v~I~na~~ 91 (137)
|.|.+-..
T Consensus 79 V~V~G~L~ 86 (124)
T 3ulp_A 79 VYVQGSLH 86 (124)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 99998775
No 63
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=72.52 E-value=1.2 Score=32.79 Aligned_cols=25 Identities=12% Similarity=0.011 Sum_probs=21.2
Q ss_pred eeEEEEEEeeCcceEEEEEecCCcC
Q 032599 52 MRIAECLVGDETGMIIFTARNDQVD 76 (137)
Q Consensus 52 ~~v~~~~VgDeTG~I~ltlW~~~~~ 76 (137)
.-+.++.|+|.||.+.++++++.+.
T Consensus 78 ry~l~~~i~D~Tg~~~~t~F~~~ae 102 (181)
T 1l1o_C 78 RMILSVNIADFQENQWVTCFQESAE 102 (181)
T ss_dssp EEEEEEEEECSSCEEEEEEEHHHHH
T ss_pred EEEEEEEEEeCCCCEEEEEEhHHHH
Confidence 3466899999999999999998753
No 64
>3k7u_C MP18 RNA editing complex protein; OB-fold, RNA-editing proteins, kinetoplastids, system, RNA binding protein; 2.10A {Trypanosoma brucei} PDB: 3k80_D 3stb_D
Probab=68.71 E-value=15 Score=26.29 Aligned_cols=61 Identities=13% Similarity=-0.016 Sum_probs=43.8
Q ss_pred CCCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEe--------------eCcceEEEEEecCC-cCC----CCCCC
Q 032599 22 GTSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVG--------------DETGMIIFTARNDQ-VDL----MKEGT 82 (137)
Q Consensus 22 ~~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~Vg--------------DeTG~I~ltlW~~~-~~~----i~~Gd 82 (137)
+++.+.|.+++-.-.+ +. . .| ..|++..|| ++|--+++++|..+ |+. ++.|+
T Consensus 5 ~~NkV~LiGrLg~DPe-r~-t--~G-----~~va~FslAv~~~~~~~~Ge~~~~~t~w~~vv~wgk~lAe~~~~yl~KG~ 75 (148)
T 3k7u_C 5 SVNSVTLVGVVHDIQS-GF-V--YE-----DAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKVKEGN 75 (148)
T ss_dssp CCCCEEEEEEEEEEEE-EE-S--SS-----SEEEEEEEEEECC-----------CEEEEEEEEESHHHHHHHHHHCCTTC
T ss_pred cCcEEEEEEEeccCCE-ee-e--CC-----cEEEEEEEEECCceecCCCCEEccccEEEEEEEECcHHHHHHHhhCCCCC
Confidence 4677899999987655 43 3 44 356665553 34667999999976 543 68999
Q ss_pred EEEEeceEE
Q 032599 83 TVILRNAKI 91 (137)
Q Consensus 83 ~v~I~na~~ 91 (137)
.|.|.+-..
T Consensus 76 ~V~VeGrL~ 84 (148)
T 3k7u_C 76 VVCVNGRLR 84 (148)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEE
Confidence 999998875
No 65
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=68.67 E-value=6.9 Score=27.32 Aligned_cols=61 Identities=11% Similarity=0.053 Sum_probs=40.7
Q ss_pred CCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEe------e---------CcceEEEEEecCCcC----CCCCCCE
Q 032599 23 TSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVG------D---------ETGMIIFTARNDQVD----LMKEGTT 83 (137)
Q Consensus 23 ~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~Vg------D---------eTG~I~ltlW~~~~~----~i~~Gd~ 83 (137)
.+.+.|.+++..-.+.+.+. + +.++...|| | +|--+++++|..+|+ .++.|+.
T Consensus 15 ~N~V~LiGrL~~dPelr~t~--~------G~v~~fslAv~~~~~d~~~Ge~~d~~t~w~~v~~wg~~Ae~~~~~l~KG~~ 86 (128)
T 4dam_A 15 EIMICAVGNVATTPVFRDLA--N------GPSVRFRLAVTARYWDREKNAWTDGHTNFFTVWANRQLATNASGSLAVGDP 86 (128)
T ss_dssp CCEEEEEEEECSCCEEEEET--T------EEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEHHHHHHHHHHCCTTCE
T ss_pred eeEEEEEEEECCCCEEEEcC--C------CCEEEEEEEEcCceecccCCceecCCcEEEEEEEEcHHHHHHHHhcCCCCE
Confidence 45567777777655555442 2 256655554 2 455789999986553 3689999
Q ss_pred EEEeceEE
Q 032599 84 VILRNAKI 91 (137)
Q Consensus 84 v~I~na~~ 91 (137)
|.|.+-..
T Consensus 87 V~VeGrL~ 94 (128)
T 4dam_A 87 VVVQGRLK 94 (128)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 99998764
No 66
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=68.32 E-value=6.1 Score=30.57 Aligned_cols=63 Identities=8% Similarity=0.125 Sum_probs=43.9
Q ss_pred CCCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEe----------eCcceEEEEEecCCcC---CCCCCCEEEEec
Q 032599 22 GTSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVG----------DETGMIIFTARNDQVD---LMKEGTTVILRN 88 (137)
Q Consensus 22 ~~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~Vg----------DeTG~I~ltlW~~~~~---~i~~Gd~v~I~n 88 (137)
.++.+.|.+++..-.+.+.+. +| ..++...|| |+|--+++++|..+++ .++.|+.|.|.+
T Consensus 127 ~~N~v~l~G~l~~dpe~r~t~--~G-----~~v~~f~lAv~~~~~g~~~~~t~~~~v~~wg~~Ae~~~~l~KG~~V~V~G 199 (264)
T 2fxq_A 127 ALNQVILMGNLTRDPDLRYTP--QG-----TAVVRLGLAVNERRRGQEEERTHFLEVQAWRELAEWASELRKGDGLLVIG 199 (264)
T ss_dssp CCEEEEEEEEESSCCCCEECT--TC-----CEEEEEEEEEECCC-------EEEEEEEEEHHHHHHHTTCCTTCEEEEEE
T ss_pred ceEEEEEEEEECCCCEEEECC--CC-----CEEEEEEEEEcCCcCCCCccccEEEEEEEEChHHHHhhhcCCCCEEEEEE
Confidence 456677888887765665543 45 466766664 2455799999985432 679999999998
Q ss_pred eEE
Q 032599 89 AKI 91 (137)
Q Consensus 89 a~~ 91 (137)
-..
T Consensus 200 ~l~ 202 (264)
T 2fxq_A 200 RLV 202 (264)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 67
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=68.29 E-value=7.2 Score=29.53 Aligned_cols=62 Identities=15% Similarity=0.176 Sum_probs=43.1
Q ss_pred CCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEee---------------CcceEEEEEecCCcC----CCCCCCE
Q 032599 23 TSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGD---------------ETGMIIFTARNDQVD----LMKEGTT 83 (137)
Q Consensus 23 ~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgD---------------eTG~I~ltlW~~~~~----~i~~Gd~ 83 (137)
.+.|.|+++|..-.+.+.+. +| ..|++..||= +|=-+++++|..+++ .++.|+.
T Consensus 4 ~N~V~LiGrL~~DPElR~T~--~G-----~~Va~FsLAvn~R~~d~~~Ge~~d~~T~wi~VvawgklAE~v~~~L~KG~~ 76 (199)
T 3eiv_A 4 ETVITVVGNLVDDPELRFTP--SG-----AAVAKFRVASTPRTFDRQTNEWKDGESLFLTCSVWRQAAENVAESLQRGMR 76 (199)
T ss_dssp CCEEEEEEEESSCCEEEECT--TC-----CEEEEEEEEECC-----------CCCCEEEEEEEETHHHHHHHHHCCTTCE
T ss_pred ccEEEEEEEECCCCeEEECC--CC-----CEEEEEEEEEcCcccccCCCcEecCccEEEEEEEEhHHHHHHHHhcCCCCE
Confidence 45578888887766666543 44 3566655542 345699999997653 3689999
Q ss_pred EEEeceEE
Q 032599 84 VILRNAKI 91 (137)
Q Consensus 84 v~I~na~~ 91 (137)
|.|.+-..
T Consensus 77 V~VeGrL~ 84 (199)
T 3eiv_A 77 VIVQGRLK 84 (199)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 99998776
No 68
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=67.94 E-value=4.2 Score=29.41 Aligned_cols=64 Identities=16% Similarity=0.210 Sum_probs=43.2
Q ss_pred CCCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEe------eC-cc-------eEEEEEecCCcC----CCCCCCE
Q 032599 22 GTSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVG------DE-TG-------MIIFTARNDQVD----LMKEGTT 83 (137)
Q Consensus 22 ~~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~Vg------De-TG-------~I~ltlW~~~~~----~i~~Gd~ 83 (137)
+++.|.|+++|..-.+.+.+. .| ..++...|| |+ +| -+++++|...++ .++.|+.
T Consensus 7 ~mN~V~LiGrL~~dPelr~t~--~G-----~~v~~f~lA~~~~~~d~~~Ge~~e~t~~i~vv~wg~~Ae~~~~~l~KG~~ 79 (158)
T 3tqy_A 7 GVNKVILIGNLGQDPEVRYTP--NG-----NAVANVTLATSTTWRDKQTGELQERTEWHRIAFFNRLAEIVGEYLRKGSK 79 (158)
T ss_dssp CEEEEEEEEEESSSCEEEECT--TC-----CEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEEETHHHHHHHHHCCTTCE
T ss_pred ccCEEEEEEEECCCCEEEECC--CC-----CEEEEEEEEEcCceeccCCCCEeeeeEEEEEEEEhHHHHHHHhhcCCCCE
Confidence 456678888887766666543 44 355555443 22 34 479999996554 3689999
Q ss_pred EEEeceEEc
Q 032599 84 VILRNAKID 92 (137)
Q Consensus 84 v~I~na~~~ 92 (137)
|.|.+-...
T Consensus 80 V~VeG~L~~ 88 (158)
T 3tqy_A 80 IYIEGSLRT 88 (158)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEe
Confidence 999988763
No 69
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=67.82 E-value=4.4 Score=28.17 Aligned_cols=64 Identities=13% Similarity=0.035 Sum_probs=41.7
Q ss_pred CCCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEe-------------------eCcceEEEEEecC-CcC----C
Q 032599 22 GTSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVG-------------------DETGMIIFTARND-QVD----L 77 (137)
Q Consensus 22 ~~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~Vg-------------------DeTG~I~ltlW~~-~~~----~ 77 (137)
+++.|.|.+++..-.+.+.+. +| ..++...|| +.|--+++++|.+ +|+ .
T Consensus 13 ~mN~V~L~GrL~~dPelr~t~--~G-----~~v~~f~lA~~~~~~~~~g~~~~~g~~~~~t~w~~v~~wg~~~Ae~~~~~ 85 (132)
T 3ull_A 13 SLNRVHLLGRVGQDPVLRQVE--GK-----NPVTIFSLATNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQY 85 (132)
T ss_dssp CEEEEEEEEEECSCCEEECCT--TS-----CCEEEEEEEEEEEECC---------CCEEEEEEEEEEECSTTHHHHHHHH
T ss_pred cCcEEEEEEEECCCCEEEECC--CC-----CEEEEEEEEEecceeccccccccCCceecceEEEEEEEEchHHHHHHHhh
Confidence 466678888887765555442 34 234443332 2345688999995 553 3
Q ss_pred CCCCCEEEEeceEEc
Q 032599 78 MKEGTTVILRNAKID 92 (137)
Q Consensus 78 i~~Gd~v~I~na~~~ 92 (137)
++.|+.|.|.|-...
T Consensus 86 l~KG~~V~V~G~L~~ 100 (132)
T 3ull_A 86 VKKGSRIYLEGKIDY 100 (132)
T ss_dssp CCTTCEEEEEEEEEC
T ss_pred CCCCCEEEEEEEEEe
Confidence 689999999987763
No 70
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=67.31 E-value=1.4 Score=32.81 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=20.9
Q ss_pred eeEEEEEEeeCcceEEEEEecCCcC
Q 032599 52 MRIAECLVGDETGMIIFTARNDQVD 76 (137)
Q Consensus 52 ~~v~~~~VgDeTG~I~ltlW~~~~~ 76 (137)
.-+.++.|+|.||.+.++++++.+.
T Consensus 74 RYil~~~i~D~TG~~wvt~F~e~ae 98 (172)
T 3u50_C 74 HLMLRAFVQDSTGTIPVMIFDQQSS 98 (172)
T ss_dssp EECEEEEEEETTEEEEEEECHHHHH
T ss_pred EEEEEEEEEeCCCCEEEEEEhHHHH
Confidence 4556899999999999999987543
No 71
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=66.75 E-value=18 Score=31.33 Aligned_cols=84 Identities=13% Similarity=0.052 Sum_probs=57.2
Q ss_pred eccCCCC--CCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEeeCcceEEEEEecC------CcCCCCCCCEEEEe
Q 032599 16 VDQLRPG--TSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDETGMIIFTARND------QVDLMKEGTTVILR 87 (137)
Q Consensus 16 I~dL~p~--~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgDeTG~I~ltlW~~------~~~~i~~Gd~v~I~ 87 (137)
+.+|... ...|.|.|.|-.+ | .- +.+.=+.+-|.+|.|.+++=.+ .+..+..|++|.|.
T Consensus 6 ~~~l~~~~~g~~V~l~GwV~~~---R----~~------G~~~Fi~LrD~~g~iQvv~~~~~~~~~~~~~~l~~e~~V~V~ 72 (585)
T 1c0a_A 6 CGQLRLSHVGQQVTLCGWVNRR---R----DL------GSLIFIDMRDREGIVQVFFDPDRADALKLASELRNEFCIQVT 72 (585)
T ss_dssp GGGCCGGGTTCEEEEEEEEEEE---E----EC------SSCEEEEEEETTEEEEEEECGGGHHHHHHHTTCCTTCEEEEE
T ss_pred HHHHHHHhCCCEEEEEEEEEEE---e----cC------CCcEEEEEEECCeeEEEEEeCCchHHHHHHhcCCCCCEEEEE
Confidence 3455432 3346777777664 2 11 3455568889999999887332 23468899999999
Q ss_pred ceEEcc---------cCCeEEEEeCCcEeEEEcC
Q 032599 88 NAKIDM---------FKGSMRLAVDKWGRVEVAE 112 (137)
Q Consensus 88 na~~~~---------~~g~~~L~vg~~g~I~~~~ 112 (137)
|-..+. -.|.++|.+.+.--+.+..
T Consensus 73 G~v~~~~~~~~n~~~~~geiEl~~~~i~vl~~a~ 106 (585)
T 1c0a_A 73 GTVRARDEKNINRDMATGEIEVLASSLTIINRAD 106 (585)
T ss_dssp EEEEECCTTTCCTTSTTTTEEEEEEEEEEEECCC
T ss_pred eEEEccCcccccccCCCccEEEEEeEEEEEeccC
Confidence 987654 3578999998876666553
No 72
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=65.35 E-value=7.3 Score=31.03 Aligned_cols=67 Identities=12% Similarity=0.131 Sum_probs=44.8
Q ss_pred CCCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEe------eC-------cceEEEEEecCCcC---CCCCCCEEE
Q 032599 22 GTSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVG------DE-------TGMIIFTARNDQVD---LMKEGTTVI 85 (137)
Q Consensus 22 ~~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~Vg------De-------TG~I~ltlW~~~~~---~i~~Gd~v~ 85 (137)
.++.+.|.++|..-.+.+.+. +| ..++...|| |+ |--+++++|..+++ .++.|+.|.
T Consensus 128 mmN~V~L~GrL~~dPelr~t~--~G-----~~v~~f~lAv~~~~~d~~Ge~~~~t~~i~vvawg~~Ae~~~~l~KG~~V~ 200 (301)
T 1se8_A 128 AMNEVLVLGNVTRDPEIRYTP--AG-----DAVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRDLAENMKELRKGDPVM 200 (301)
T ss_dssp CEEEEEEEEEECSCCEEEECT--TC-----CEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTTCCTTCEEE
T ss_pred ceeEEEEEEEECcCCEEEECC--CC-----CEEEEEEEEEcCceEcCCCCcccccEEEEEEECCHHHHHHHhcCCCCEEE
Confidence 355577888887766665543 45 366666665 22 33699999985431 289999999
Q ss_pred EeceEEc-ccC
Q 032599 86 LRNAKID-MFK 95 (137)
Q Consensus 86 I~na~~~-~~~ 95 (137)
|.+-... .|.
T Consensus 201 V~GrL~~~~y~ 211 (301)
T 1se8_A 201 IMGRLVNEGWT 211 (301)
T ss_dssp EEEEEEEEECC
T ss_pred EEEEEeeeeEE
Confidence 9988653 353
No 73
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=64.04 E-value=3.9 Score=38.77 Aligned_cols=70 Identities=16% Similarity=0.132 Sum_probs=34.7
Q ss_pred CCceEEEEEEEcceeeeeccCCCccccceeEEEEEEeeCcceEEEEEecCC----cCCCCCCCEEEEeceEEcccCCeEE
Q 032599 24 SGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDETGMIIFTARNDQ----VDLMKEGTTVILRNAKIDMFKGSMR 99 (137)
Q Consensus 24 ~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgDeTG~I~ltlW~~~----~~~i~~Gd~v~I~na~~~~~~g~~~ 99 (137)
..+.+-+.|.++..+.+. .| ..|+-+.+.|+||.+.+++|.+. ...+.+|..+.|.+-.-+. . .++
T Consensus 1043 ~~v~v~G~v~~~~~~~Tk---~G-----~~maf~tleD~tg~~evvvf~~~~~~~~~~l~~~~~~~v~G~v~~~-~-~~~ 1112 (1220)
T 2hpi_A 1043 PKVLLSGMVEEVVRKPTR---SG-----GMMARFTLSDETGALEVVVFGRAYEGVSPKLKEDIPLLVLAEVEKG-E-ELR 1112 (1220)
T ss_dssp CEEEEEEEECCC--------------------CEEEEETTEEEEEC-------------CTTCEEEEEEEEC-------C
T ss_pred CeEEEEEEEEEEEEeecC---CC-----CeEEEEEEEECCCCEEEEEcHHHHHHHHHHhccCCEEEEEEEEEEC-C-CcE
Confidence 446788888887776542 23 47888999999999999999854 3446788888887755322 2 345
Q ss_pred EEeC
Q 032599 100 LAVD 103 (137)
Q Consensus 100 L~vg 103 (137)
|.+.
T Consensus 1113 l~~~ 1116 (1220)
T 2hpi_A 1113 VLAQ 1116 (1220)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5443
No 74
>3ebe_A Protein MCM10 homolog; OB-fold, zinc finger, CCCH, DNA replication, metal-binding, zinc-finger, replication; 2.30A {Xenopus laevis} PDB: 3h15_A
Probab=63.90 E-value=11 Score=28.40 Aligned_cols=95 Identities=17% Similarity=0.068 Sum_probs=58.9
Q ss_pred CeeeeeccCC-----CC--CCCceEEEEEEEcceeeeeccCCCccccceeEEEEE---EeeCcceEEEEEecCCc---CC
Q 032599 11 PVFTKVDQLR-----PG--TSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECL---VGDETGMIIFTARNDQV---DL 77 (137)
Q Consensus 11 ~~~~kI~dL~-----p~--~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~---VgDeTG~I~ltlW~~~~---~~ 77 (137)
-.+.++.+|. |. ..+.-+.|.|++..+++... .|. ...-.. +.|....+.+-|+++.. -.
T Consensus 36 ~k~~~l~~L~~~v~~~~~~e~dwv~~GVV~~Ks~pk~~~--~gk-----~y~~w~l~DL~~~~~~V~lfLFg~a~~~~~k 108 (200)
T 3ebe_A 36 RKLIRLAQLQNKIATEKLEEEDWVTFGVIVKKITPQSSN--NGK-----TFSIWRLNDLKDLDKYISLFLFGDVHKEHWK 108 (200)
T ss_dssp CEECCGGGHHHHHHTTCSTTSCEEEEEEEEEEECC--------------CCEEEEEECSSSTTCCEEEEECHHHHHHHTT
T ss_pred CeEEeHHHHHhhccCCCCCcCCEEEEEEEEecCCccCcC--CCC-----eEEEEEEEecCCCCcEEEEEEechHHHHhcC
Confidence 3555666662 11 22445778899998887643 443 222333 45666789999998532 23
Q ss_pred CCCCCEEEEeceEEccc---CCeEEEEeCCcEeEEEcC
Q 032599 78 MKEGTTVILRNAKIDMF---KGSMRLAVDKWGRVEVAE 112 (137)
Q Consensus 78 i~~Gd~v~I~na~~~~~---~g~~~L~vg~~g~I~~~~ 112 (137)
+.+|++|-|-|+.+-.. .+...|+++....|.+++
T Consensus 109 ~~~G~ViaiLNP~i~~~~~~~~~~sLsv~~~~~Il~IG 146 (200)
T 3ebe_A 109 TDQGTVIGLLNANPMKPKEGTDEVCLSVDNPQKVLLMG 146 (200)
T ss_dssp CCTTEEEEEESCEECCCCTTCCCEEEECSSGGGEEEEE
T ss_pred cCCceEEEEECCEEccCCCCCcceEEEECCcccEEEEE
Confidence 68999999999997332 246888888877777665
No 75
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=61.23 E-value=8.4 Score=28.18 Aligned_cols=84 Identities=10% Similarity=0.165 Sum_probs=52.4
Q ss_pred CCCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEe--------------eCcceEEEEEecC-CcCC----CCCCC
Q 032599 22 GTSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVG--------------DETGMIIFTARND-QVDL----MKEGT 82 (137)
Q Consensus 22 ~~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~Vg--------------DeTG~I~ltlW~~-~~~~----i~~Gd 82 (137)
.++.|.|+++|..-.+.+.+. +| ..++...|| |+|--+++++|.. .++. ++.|+
T Consensus 22 ~mNkV~LiGrL~~DPelr~t~--~G-----~~v~~FslAv~~~~~~~~~Ge~~~~t~~i~vv~wg~~lAe~~~~~l~KG~ 94 (169)
T 3lgj_A 22 MLNKVMLIGYLGDDPESKTMT--SG-----AEVVNFRMATFESYMNKNTHQKVEKTEWHSVVVFNPHFAKIALQYLHKGS 94 (169)
T ss_dssp CEEEEEEEEEESSCCEEEECT--TS-----CEEEEEEEEEEC------------CEEEEEEEECCHHHHHHHHHHCCTTC
T ss_pred ceeEEEEEEEECCCCeEEECC--CC-----CEEEEEEEEEcCceecccCCccccccEEEEEEEeCHHHHHHHHHhCCCCC
Confidence 466678888887766666543 45 345554443 2355789999997 6643 68999
Q ss_pred EEEEeceEEc-ccC---C----eEEEEeCCc-EeEEEcC
Q 032599 83 TVILRNAKID-MFK---G----SMRLAVDKW-GRVEVAE 112 (137)
Q Consensus 83 ~v~I~na~~~-~~~---g----~~~L~vg~~-g~I~~~~ 112 (137)
.|.|.+-... .|. | .+++.+... ..|..++
T Consensus 95 ~V~VeGrL~~r~~~dkdG~~r~~~eIva~~~~~~i~~L~ 133 (169)
T 3lgj_A 95 KVYIEGKLQTRKWQDKNGHDRYTTEIVLPQYKGELHLLD 133 (169)
T ss_dssp EEEEEEEEEEECC--------CEEEEEECTTCCEEEEEC
T ss_pred EEEEEEEEEEEEEECCCCCEEEEEEEEEEeccCcEEEcc
Confidence 9999988763 342 3 345655543 3555444
No 76
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=58.57 E-value=2.4 Score=31.42 Aligned_cols=62 Identities=13% Similarity=0.104 Sum_probs=40.6
Q ss_pred CCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEe------e--------CcceEEEEEecCCcC----CCCCCCEE
Q 032599 23 TSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVG------D--------ETGMIIFTARNDQVD----LMKEGTTV 84 (137)
Q Consensus 23 ~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~Vg------D--------eTG~I~ltlW~~~~~----~i~~Gd~v 84 (137)
++.|.|+++|..--+.+.+. +| ..+++..|| | +|--+++++|...++ .++.|+.|
T Consensus 6 ~N~V~LiGrL~~dPelr~t~--~G-----~~v~~f~LAv~~~~~d~~~Ge~~~~t~~i~vv~wg~~Ae~~~~~l~KG~~V 78 (178)
T 1eqq_A 6 VNKVILVGNLGQDPEVRYMP--NG-----GAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQV 78 (178)
T ss_dssp EEEEEEEEEESSSCCCCEET--TT-----EECCCCEEEEEECCCCSSSSSCCCEEEEEEEEECHHHHHHHHHHCCTTCEE
T ss_pred eeEEEEEEEECCCCEEEECC--CC-----CEEEEEEEEEcCCeecCCCCceecccEEEEEEEccHHHHHHHHhcCCCCEE
Confidence 44567777777655555542 34 345554443 2 234689999986553 36899999
Q ss_pred EEeceEE
Q 032599 85 ILRNAKI 91 (137)
Q Consensus 85 ~I~na~~ 91 (137)
.|.+-..
T Consensus 79 ~VeGrL~ 85 (178)
T 1eqq_A 79 YIEGQLR 85 (178)
T ss_dssp EECCEEE
T ss_pred EEEEEEE
Confidence 9998865
No 77
>1miu_A BRCA2, breast cancer type 2 susceptibility protein; tumor suppressor, breast cancer susceptibility, DNA-binding; 3.10A {Mus musculus} SCOP: a.170.1.1 a.171.1.1 b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1iyj_B 1mje_A
Probab=57.64 E-value=33 Score=30.89 Aligned_cols=82 Identities=16% Similarity=0.126 Sum_probs=60.9
Q ss_pred CCCCCCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEeeCcc-eEEEEEecCCcCCCCCCCEEEEeceEEccc--C
Q 032599 19 LRPGTSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDETG-MIIFTARNDQVDLMKEGTTVILRNAKIDMF--K 95 (137)
Q Consensus 19 L~p~~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgDeTG-~I~ltlW~~~~~~i~~Gd~v~I~na~~~~~--~ 95 (137)
..|.-.-|++.|.|+.+.... |. .. -+.++|+.. -+-+.+|....+.+++|..|-+.|-..+-. .
T Consensus 607 f~p~~~EvDivG~Vv~v~~~~------~~----~~--~vylsD~~~nll~Ikf~~~l~eD~~~~~~va~sNL~~r~~~~~ 674 (738)
T 1miu_A 607 FQPPCSEVDVVGVVVSVVKPI------GL----AP--LVYLSDECLNLLVVKFGIDLNEDIKPRVLIAASNLQCQPESTS 674 (738)
T ss_dssp CCTTTTEEEEEEEEEEEECCT------TS----CC--EEEEECSSSCEEEEEESSCCCSCCCSSCEEEEEEEECCSCCSS
T ss_pred ccCCCCceeEEEEEEEEcccC------cc----cc--eEEEEcCCCcEEEEEEecCchhhCccccEEEEeeeEeeccccc
Confidence 356667899999999996632 11 11 335789873 455667987655599999999999988653 3
Q ss_pred CeEEEEeCCcEeEEEcC
Q 032599 96 GSMRLAVDKWGRVEVAE 112 (137)
Q Consensus 96 g~~~L~vg~~g~I~~~~ 112 (137)
+-+.|..+.++.+...|
T Consensus 675 ~ip~~~a~~~t~fs~~p 691 (738)
T 1miu_A 675 GVPTLFAGHFSIFSASP 691 (738)
T ss_dssp SCCCEEECTTCEEESSC
T ss_pred cCceEEeccceEEecCc
Confidence 67899999999988776
No 78
>1miu_A BRCA2, breast cancer type 2 susceptibility protein; tumor suppressor, breast cancer susceptibility, DNA-binding; 3.10A {Mus musculus} SCOP: a.170.1.1 a.171.1.1 b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1iyj_B 1mje_A
Probab=57.43 E-value=4.8 Score=36.28 Aligned_cols=49 Identities=14% Similarity=0.174 Sum_probs=40.8
Q ss_pred ceEEEEEecCC---cCCCCCCCEEEEeceEEcccC-----CeEEEEeCCcEeEEEcC
Q 032599 64 GMIIFTARNDQ---VDLMKEGTTVILRNAKIDMFK-----GSMRLAVDKWGRVEVAE 112 (137)
Q Consensus 64 G~I~ltlW~~~---~~~i~~Gd~v~I~na~~~~~~-----g~~~L~vg~~g~I~~~~ 112 (137)
..+.|++|+.. ...++||..++|+|-.....+ +.++|+.++.+++.+++
T Consensus 525 k~~iLSIW~P~edl~s~L~EG~~y~iy~L~~s~s~~~~~~~~lqLtAtk~T~~~~L~ 581 (738)
T 1miu_A 525 KSALLSIWRPSSDLSSLLTEGKRYRIYHLAVSKSKSKFERPSIQLTATKRTQYQQLP 581 (738)
T ss_dssp CCEEEEEESCCHHHHHHCCSSCEEEEEEECCCCCCCSSSCCSCEEEEEEEEEEEEEC
T ss_pred ceEEEEEeCCChHHHhhccCCcEEEEEEeeccCCCccCccceEEEeecccceeEECC
Confidence 37899999943 345899999999999987654 36899999999999886
No 79
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=55.29 E-value=11 Score=28.43 Aligned_cols=84 Identities=12% Similarity=0.224 Sum_probs=51.9
Q ss_pred CCCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEee--------------CcceEEEEEecC-CcC----CCCCCC
Q 032599 22 GTSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGD--------------ETGMIIFTARND-QVD----LMKEGT 82 (137)
Q Consensus 22 ~~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgD--------------eTG~I~ltlW~~-~~~----~i~~Gd 82 (137)
+++.|.|++++..-.+.+.+. +| ..|++..||= +|--+++++|.. .++ .++.|+
T Consensus 25 ~mNkV~LiGrLg~DPElR~t~--~G-----~~Va~FsLAvnr~~kd~~~Ge~~e~Tdwi~Vvawgk~lAe~~~~yL~KGs 97 (193)
T 3pgz_A 25 SLNKVILIGNLGADPEIRRLN--SG-----DQVANLRIATSESWRDRNTNERKERTEWHNIVIFNENLVKVVEQYLKKGS 97 (193)
T ss_dssp CEEEEEEEEEESSCCEEEECT--TS-----CEEEEEEEEEEEEECCC-----EEEEEEEEEEECCHHHHHHHHHHCCTTC
T ss_pred hcCEEEEEEEECCCCeEEECC--CC-----CEEEEEEEEEcCceeccCCCceeeeeEEEEEEEECHHHHHHHHhhcCCCC
Confidence 356678888887766666543 44 3566655541 234589999985 443 368999
Q ss_pred EEEEeceEE-cccC---C----eEEEEeCCcE-eEEEcC
Q 032599 83 TVILRNAKI-DMFK---G----SMRLAVDKWG-RVEVAE 112 (137)
Q Consensus 83 ~v~I~na~~-~~~~---g----~~~L~vg~~g-~I~~~~ 112 (137)
.|.|.+-.. +.|. | .+++.+.+.+ .|..++
T Consensus 98 ~V~VeGrL~trswedkdG~kr~~tEVva~~~~~~i~fL~ 136 (193)
T 3pgz_A 98 KIYIEGQLQTRKWQDQNGNDRYTTEIVLQKYRGELQMLD 136 (193)
T ss_dssp EEEEEEEEEEEEEECTTSCEEEEEEEEECTTCCEEEECC
T ss_pred EEEEEEEEEEEEeECCCCCEEEEEEEEEEeccCceEECc
Confidence 999998765 2342 2 3455555542 455443
No 80
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=54.41 E-value=15 Score=28.17 Aligned_cols=31 Identities=16% Similarity=0.080 Sum_probs=26.5
Q ss_pred eEEEEEecCCcCCCCCCCEEEEeceEEcccC
Q 032599 65 MIIFTARNDQVDLMKEGTTVILRNAKIDMFK 95 (137)
Q Consensus 65 ~I~ltlW~~~~~~i~~Gd~v~I~na~~~~~~ 95 (137)
++.+.|-++..+.++|||.|.|.|-+...+.
T Consensus 212 si~v~l~~dLvd~~~PGDrV~vtGI~~~~~~ 242 (268)
T 2vl6_A 212 QLEIILEDDLVDSARPGDRVKVTGILDIKQD 242 (268)
T ss_dssp EEEEEEEGGGTTSSCTTCEEEEEEEEEEECS
T ss_pred EEEEEEccCccCcccCCCEEEEEEEEEEeec
Confidence 5677777889999999999999999987664
No 81
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=53.11 E-value=17 Score=27.96 Aligned_cols=62 Identities=16% Similarity=0.183 Sum_probs=40.9
Q ss_pred CCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEe------eCcc-------eEEEEEecCCc----CCCCCCCEEE
Q 032599 23 TSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVG------DETG-------MIIFTARNDQV----DLMKEGTTVI 85 (137)
Q Consensus 23 ~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~Vg------DeTG-------~I~ltlW~~~~----~~i~~Gd~v~ 85 (137)
++.+.|.+++..-.+.+.+. .| ..+++..|| |+.| -+++++|..++ ..++.|+.|.
T Consensus 5 ~N~v~L~G~l~~dpelr~t~--~G-----~~v~~f~lA~~~~~~~~~G~~~~~t~~~~v~~~g~~Ae~~~~~l~KG~~V~ 77 (264)
T 2fxq_A 5 LNQVFLIGTLTARPDMRYTP--GG-----LAILDLNLAGQDAFTDESGQEREVPWYHRVRLLGRQAEMWGDLLEKGQLIF 77 (264)
T ss_dssp EEEEEEEEEESSCCCCEECT--TC-----CEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTTTCCTTCEEE
T ss_pred eeEEEEEEEeccCCeEEECC--CC-----CEEEEEEEEECCcEECCCCCEecccEEEEEEEEchHHHHHHHhCCCCCEEE
Confidence 45577778877655555442 44 355555554 2333 48999998654 3478999999
Q ss_pred EeceEE
Q 032599 86 LRNAKI 91 (137)
Q Consensus 86 I~na~~ 91 (137)
|.+-..
T Consensus 78 V~G~L~ 83 (264)
T 2fxq_A 78 VEGRLE 83 (264)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 998764
No 82
>3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=52.72 E-value=71 Score=24.46 Aligned_cols=81 Identities=17% Similarity=0.145 Sum_probs=49.2
Q ss_pred CCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEeeCcce---EEEEEecCC-------cCCCCCCCEEEEeceEEc
Q 032599 23 TSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDETGM---IIFTARNDQ-------VDLMKEGTTVILRNAKID 92 (137)
Q Consensus 23 ~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgDeTG~---I~ltlW~~~-------~~~i~~Gd~v~I~na~~~ 92 (137)
.+.+.|.|+|+...... .|..|+ .....-..|-|.||. |.+.+=.++ .+....|.+|.|.|...
T Consensus 85 I~~V~IvG~VVg~~~k~--~r~~~~---~~~~~~l~IDDsSG~~s~i~~k~~~~~~~~~gl~l~~~~~G~iV~VkG~i~- 158 (220)
T 3kf8_A 85 VNQINIFGKIVYEQYKE--KEFNGV---EESYVILVISDFIGIDSKIRVRLSQEQFKEVGLTLDKKNYGKIVELEGEIY- 158 (220)
T ss_dssp ECEEEEEEEEEEEEEEC--CBCSSC---BCCEEEEEEECCCSSSCEEEEEEEHHHHHTTTCCTTSCCTTCEEEEEEEEE-
T ss_pred cEEEEEEEEEEEEEEEe--cccccc---ccceEEEEEeCCCCCCceEEEEecHHHhhccCccccccCCCeEEEEEEEEE-
Confidence 35689999999986532 222332 234555789999997 443332111 11235899999999886
Q ss_pred ccCC--------eEEEEeCCcEeEE
Q 032599 93 MFKG--------SMRLAVDKWGRVE 109 (137)
Q Consensus 93 ~~~g--------~~~L~vg~~g~I~ 109 (137)
.|++ ..+|.+.+---+.
T Consensus 159 ~~r~~~~~~~~~~rei~ve~i~vl~ 183 (220)
T 3kf8_A 159 NWYDSINVSKKPDRELKVSKITVLS 183 (220)
T ss_dssp ECCCSTTTTSCCCEEEEEEEEEEEE
T ss_pred eeccccccccccceEEEEEEEEEec
Confidence 4544 4577766555443
No 83
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=50.33 E-value=61 Score=26.10 Aligned_cols=70 Identities=17% Similarity=0.130 Sum_probs=45.8
Q ss_pred eeeeccCCCCCC-CceEEEEEEEcceeeeeccCCCccccceeEEEEEEeeCcceE-EEEEecCCcC-CCCCCCEEEEece
Q 032599 13 FTKVDQLRPGTS-GHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDETGMI-IFTARNDQVD-LMKEGTTVILRNA 89 (137)
Q Consensus 13 ~~kI~dL~p~~~-~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgDeTG~I-~ltlW~~~~~-~i~~Gd~v~I~na 89 (137)
...+.+|.|+.+ +.-+.+||+...... . ..-...++.|..|++ -+++|+-... .+..||+|.|-..
T Consensus 355 ~~~l~~l~~~~~~~~~~~~kv~~~~~~~------~-----~~p~~~~~~d~~~~~~~~~~y~~~~~~~~~~gd~~~~~~p 423 (474)
T 4abn_A 355 LKPLSTLQPGVNSGTVVLGKVVFSLTTE------E-----KVPFTFGLVDSDGPCYAVMVYNVVQSWGVLIGDSVAIPEP 423 (474)
T ss_dssp ECCGGGCCSEECTTEEEEEEEEEEECCT------T-----CCSEEEEEESSSSCCEEEEECSBCTTCCCCTTCEEEEESC
T ss_pred eccHhhcccccCCCeEEEEEEEEEecCC------C-----CCceEEEEEcCCCCEEEEEEecccCCCceecCceEeecCC
Confidence 345778888754 345567777654332 1 122455667887766 5778884333 5899999999999
Q ss_pred EEcc
Q 032599 90 KIDM 93 (137)
Q Consensus 90 ~~~~ 93 (137)
+++.
T Consensus 424 ~~~~ 427 (474)
T 4abn_A 424 NLRH 427 (474)
T ss_dssp EEEE
T ss_pred cceE
Confidence 8865
No 84
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=46.01 E-value=20 Score=27.81 Aligned_cols=30 Identities=20% Similarity=0.221 Sum_probs=25.7
Q ss_pred eEEEEEecCCcCCCCCCCEEEEeceEEccc
Q 032599 65 MIIFTARNDQVDLMKEGTTVILRNAKIDMF 94 (137)
Q Consensus 65 ~I~ltlW~~~~~~i~~Gd~v~I~na~~~~~ 94 (137)
++.+.|-++..+.++|||.|.|.|-+...+
T Consensus 199 si~V~l~~dLvd~~~PGDrV~vtGI~~~~~ 228 (279)
T 1ltl_A 199 QITVVLEDDLVDTLTPGDIVRVTGTLRTVR 228 (279)
T ss_dssp EEEEEEEGGGTTCCCTTCEEEEEEEEEEEE
T ss_pred EEEEEEcccccCccCCCCEEEEEEEEEEee
Confidence 567777788899999999999999997665
No 85
>3e0j_A DNA polymerase subunit delta-2; DNA polymerase delta, P66 subunit, P50 subunit, human, DNA replication, DNA-directed DNA polymerase; HET: DNA; 3.00A {Homo sapiens}
Probab=44.34 E-value=49 Score=28.13 Aligned_cols=41 Identities=22% Similarity=0.258 Sum_probs=32.3
Q ss_pred EEEEeeCcceEEEEEecCCcCCCCCCCEEEEeceEEcccCCeEE
Q 032599 56 ECLVGDETGMIIFTARNDQVDLMKEGTTVILRNAKIDMFKGSMR 99 (137)
Q Consensus 56 ~~~VgDeTG~I~ltlW~~~~~~i~~Gd~v~I~na~~~~~~g~~~ 99 (137)
.+.+-|+||+|+|.. .-+...+-.|-+|-+.|.... +|.+.
T Consensus 139 ~l~LEDesGRv~L~g-~~~~~~lVTG~VvaV~G~~~~--~G~F~ 179 (476)
T 3e0j_A 139 ELVLEDELQRIKLKG-TIDVSKLVTGTVLAVFGSVRD--DGKFL 179 (476)
T ss_dssp EEEEECSSCEEEEEE-SCCTTTCCTTCEEEEEEEECT--TSSEE
T ss_pred eEEEECCCCEEEEEE-EcccccccCCcEEEEEEEEcC--CCeEE
Confidence 589999999999998 435566889999999997764 45443
No 86
>2k14_A YUAF protein; NFED-like protein, cellular stress, unknown function; NMR {Bacillus subtilis}
Probab=40.02 E-value=13 Score=23.66 Aligned_cols=38 Identities=18% Similarity=0.306 Sum_probs=22.5
Q ss_pred eeEEEEEEeeCcceEEE-----E-EecCCc---CCCCCCCEEEEece
Q 032599 52 MRIAECLVGDETGMIIF-----T-ARNDQV---DLMKEGTTVILRNA 89 (137)
Q Consensus 52 ~~v~~~~VgDeTG~I~l-----t-lW~~~~---~~i~~Gd~v~I~na 89 (137)
+.+.+.+=.+.+|.|+| . .|.... ..|.+|+.|+|...
T Consensus 25 g~V~~~i~~~~~G~V~i~g~gg~~~W~A~s~~~~~i~~G~~V~Vv~v 71 (84)
T 2k14_A 25 GKVITAVPVDGFGEVVIEGIGGTISKSAVSFDNQQISYGTTVLVVDI 71 (84)
T ss_dssp EEEEECBCTTCEEEEEESCTTSCCCEEEEETTSCCBCSSCEEEEEEE
T ss_pred EEEEEEeCCCCcEEEEEeeECccEEEEEEeCCCCccCCCCEEEEEEE
Confidence 44444322344666666 2 576432 34899999998764
No 87
>1qp2_A Protein (PSAE protein); mainly beta, roll, pleckstrin topology, SH3-like, electron T; NMR {Nostoc SP} SCOP: b.34.4.2 PDB: 1qp3_A
Probab=38.21 E-value=36 Score=21.66 Aligned_cols=57 Identities=21% Similarity=0.251 Sum_probs=32.2
Q ss_pred CCCCCCEEEEeceEEcccCC-eEEEEeCCcE----eEEEcCCCceEEcCCCCccccceeeee
Q 032599 77 LMKEGTTVILRNAKIDMFKG-SMRLAVDKWG----RVEVAEPANFTVKEDNNLSLIEYELVN 133 (137)
Q Consensus 77 ~i~~Gd~v~I~na~~~~~~g-~~~L~vg~~g----~I~~~~~~~~~vn~~~n~S~~eye~~~ 133 (137)
++..|+.|+|.+.-.-.|+. ..-.++++.| -+.+-+.-++.=..++|++.-|-|.+.
T Consensus 1 Mi~rGs~VrIlr~eSywy~~vG~V~~Vd~~~~~ypV~VrFekvNy~g~~TnnFal~ELe~v~ 62 (70)
T 1qp2_A 1 MVQRGSKVRILRPESYWFQDVGTVASVDQSGIKYPVIVRFEKVNYSGINTNNFAEDELVEVE 62 (70)
T ss_dssp CCCTTCEEEECCTTSTTTTCEEEEEEECCSSCSCSEEEECSSCCSSCCSEEEECGGGEEECC
T ss_pred CcCCCCEEEEcCccceeecceeEEEEEeCCCcEeeEEEEecccccccccccccChhHeeEec
Confidence 46899999999988655654 3344555544 333333322222235566666665543
No 88
>3cp0_A Membrane protein implicated in regulation of MEMB protease activity; beta barrel, structural genomics, PSI-2; 1.65A {Corynebacterium glutamicum atcc 13032}
Probab=36.68 E-value=26 Score=21.96 Aligned_cols=38 Identities=16% Similarity=0.284 Sum_probs=25.0
Q ss_pred ceeEEEEEEeeCcceEEEE--EecCCc----CCCCCCCEEEEece
Q 032599 51 QMRIAECLVGDETGMIIFT--ARNDQV----DLMKEGTTVILRNA 89 (137)
Q Consensus 51 ~~~v~~~~VgDeTG~I~lt--lW~~~~----~~i~~Gd~v~I~na 89 (137)
.+.+.+-+ .+.+|.|++- .|+... ..+.+|+.|+|...
T Consensus 28 ~~~v~~~i-~~~~G~V~~~G~~W~A~s~~~~~~i~~G~~V~Vv~v 71 (82)
T 3cp0_A 28 RAEVLEDV-GATSGQVRLDGSIWSARSMDPTHTFAEGEIVSVIDI 71 (82)
T ss_dssp EEEEEECB-CSSCCEEEETTEEEEEEESSTTCCBCTTCEEEEEEE
T ss_pred EEEEEEEe-CCCCEEEEECCEEEEEEECCCCCccCCCCEEEEEEE
Confidence 35555433 3457888874 788543 35899999998753
No 89
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=35.85 E-value=32 Score=27.20 Aligned_cols=62 Identities=16% Similarity=0.208 Sum_probs=40.8
Q ss_pred CCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEee------Ccc-------eEEEEEecCCc----CC-CCCCCEE
Q 032599 23 TSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGD------ETG-------MIIFTARNDQV----DL-MKEGTTV 84 (137)
Q Consensus 23 ~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgD------eTG-------~I~ltlW~~~~----~~-i~~Gd~v 84 (137)
++.|.|.+++..-.+.+.+. .| ..+++..||= ++| -+++++|..++ .. ++.|+.|
T Consensus 5 mN~V~LiGrL~~dPelr~t~--~G-----~~v~~f~LAv~r~~~~~~G~~~~~t~~i~vv~~g~~Ae~~~~~~l~KG~~V 77 (301)
T 1se8_A 5 MNHVYLIGALARDPELRYTG--NG-----MAVFEATVAGEDRVIGNDGRERNLPWYHRVSILGKPAEWQAERNLKGGDAV 77 (301)
T ss_dssp EEEEEEEEEESSCCEEEECT--TS-----CEEEEEEEEEEEEC-------CEEEEEEEEEEESHHHHHHHHTCCCTTCEE
T ss_pred eeEEEEEEEECCCceEEECC--CC-----CEEEEEEEEEcCceECCCCCEecceEEEEEEEEcHHHHHHHhhCCCCCCEE
Confidence 45677888877765665543 45 3566655542 233 58999998654 34 7899999
Q ss_pred EEeceEE
Q 032599 85 ILRNAKI 91 (137)
Q Consensus 85 ~I~na~~ 91 (137)
.|.+-..
T Consensus 78 ~VeG~L~ 84 (301)
T 1se8_A 78 VVEGTLE 84 (301)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 9998765
No 90
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=34.94 E-value=57 Score=25.42 Aligned_cols=70 Identities=14% Similarity=0.009 Sum_probs=45.8
Q ss_pred eeeeccCCCC--C---CCceEEEEEEEcceeeeeccCCCccccceeEEEEEEee--------------CcceEEEEEecC
Q 032599 13 FTKVDQLRPG--T---SGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGD--------------ETGMIIFTARND 73 (137)
Q Consensus 13 ~~kI~dL~p~--~---~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgD--------------eTG~I~ltlW~~ 73 (137)
+.++.+...+ | +.+.|.+++ .-.+.+.+. | ..|++..||- +|--+++++|..
T Consensus 131 ~~~v~~~~g~~~M~~lNkV~LiGrL-~DPElR~t~---G-----~~Va~FslAv~~~~~~~~~~e~~~~Tdw~~Vv~wgk 201 (257)
T 4dni_A 131 VLKVKLASGAGHMKSVNSVTLVGVV-HDIQSGFVY---E-----DAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGE 201 (257)
T ss_dssp EEEGGGSCSSCTTSCEEEEEEEEEE-EEEEEEEET---T-----EEEEEEEEEEEEEECCCTTCSCEEEEEEEEEEEESH
T ss_pred ceeeecccccccccccCEEEEEEEc-CCCEEEEeC---C-----cEEEEEEEEECCCccCCCCceEccceEEEEEEEECC
Confidence 3345555543 3 456778888 544455442 5 4677766642 344699999997
Q ss_pred C--c---CCCCCCCEEEEeceEE
Q 032599 74 Q--V---DLMKEGTTVILRNAKI 91 (137)
Q Consensus 74 ~--~---~~i~~Gd~v~I~na~~ 91 (137)
. + ..++.|+.|.|.+-..
T Consensus 202 ~~~AEi~~~L~KG~~V~VeGrL~ 224 (257)
T 4dni_A 202 LFSAEVKQKVKEGNVVCVNGRLR 224 (257)
T ss_dssp HHHHHHHHHCCTTCEEEEEEEEE
T ss_pred ccHHHHHhhCCCCCEEEEEEEEE
Confidence 6 4 3478999999998754
No 91
>3k81_C MP18 RNA editing complex protein; krepa6, single domain antibody, immune system, RNA BIND protein; 3.40A {Trypanosoma brucei}
Probab=29.39 E-value=48 Score=24.25 Aligned_cols=67 Identities=12% Similarity=0.016 Sum_probs=44.4
Q ss_pred eccCCCCCCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEee--------------CcceEEEEEecCC-cC----
Q 032599 16 VDQLRPGTSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGD--------------ETGMIIFTARNDQ-VD---- 76 (137)
Q Consensus 16 I~dL~p~~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgD--------------eTG~I~ltlW~~~-~~---- 76 (137)
+.....+++.|.|.+++..-.+.+.+. ..|++..||= +|--+++++|... ++
T Consensus 15 ~~r~a~smNkViLiGrLg~DPElR~t~---------~~Va~fsLAt~~r~~~~~~ge~~~~Tdw~~Vv~wgk~lAE~~~~ 85 (164)
T 3k81_C 15 FMRCCKSVNSVTLVGVVHDIQSGFVYE---------DAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQ 85 (164)
T ss_dssp -----CCEEEEEEEEEEECCCCEESSS---------CEECCEEEEECCC--------CCCCCEEEEEEECCHHHHHHHHH
T ss_pred hhHHhcCCcEEEEEEEeccCCEEEEcC---------ccEEEEEEEEcCceeeCCCCcCccceEEEEEEEECCHHHHHHHh
Confidence 344455677788888888876665442 2455544442 3556999999977 54
Q ss_pred CCCCCCEEEEeceEE
Q 032599 77 LMKEGTTVILRNAKI 91 (137)
Q Consensus 77 ~i~~Gd~v~I~na~~ 91 (137)
.++.|+.|.|.+-..
T Consensus 86 yL~KGs~V~VeGrL~ 100 (164)
T 3k81_C 86 KVKEGNVVCVNGRLR 100 (164)
T ss_dssp HCCTTCEEEECCEEE
T ss_pred hcCCCCEEEEEEEEE
Confidence 368999999999765
No 92
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=28.64 E-value=72 Score=19.57 Aligned_cols=28 Identities=11% Similarity=0.186 Sum_probs=23.1
Q ss_pred CCCCCCCEEEEeceEEcccCCeEEEEeC
Q 032599 76 DLMKEGTTVILRNAKIDMFKGSMRLAVD 103 (137)
Q Consensus 76 ~~i~~Gd~v~I~na~~~~~~g~~~L~vg 103 (137)
+.+++||.|+++=..++..++++.|++-
T Consensus 44 ~~~~~Gd~V~v~V~~vd~~~~~i~lsl~ 71 (80)
T 2k52_A 44 ENLNVGDEIIVQAIDVRPEKREIDFKYI 71 (80)
T ss_dssp GGCCTTCEEEEEEEEEETTTTEEEEEEC
T ss_pred eeeCCCCEEEEEEEEEECCCCEEEEEEe
Confidence 4689999999888888887898888763
No 93
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=28.37 E-value=66 Score=28.20 Aligned_cols=61 Identities=15% Similarity=0.201 Sum_probs=42.8
Q ss_pred EEEeeCcceEEEEEecCC--------cCCCCCCCEEEEeceEEc---------ccCCeEEEEeCCcEeEEEcCCCceE
Q 032599 57 CLVGDETGMIIFTARNDQ--------VDLMKEGTTVILRNAKID---------MFKGSMRLAVDKWGRVEVAEPANFT 117 (137)
Q Consensus 57 ~~VgDeTG~I~ltlW~~~--------~~~i~~Gd~v~I~na~~~---------~~~g~~~L~vg~~g~I~~~~~~~~~ 117 (137)
+.+-|.+|.|.+++=.+. +..+..|++|.|.|-..+ .-.|.++|.+.+.--+.+..+..+.
T Consensus 42 i~LrD~~g~iQvv~~~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~n~~~~tgeiEl~~~~i~vL~~a~~lP~~ 119 (617)
T 4ah6_A 42 LVLRDFDGLVQVIIPQDESAASVKKILCEAPVESVVQVSGTVISRPAGQENPKMPTGEIEIKVKTAELLNACKKLPFE 119 (617)
T ss_dssp EEEECSSCEEEEECCCSSSSHHHHHHHHHCCSSCEEEEEEEEEECSTTCCCTTSTTTTEEEEEEEEEEEECBCCCSSC
T ss_pred EEEEeCCcCEEEEEeCCcCcHHHHHHHhcCCCCCEEEEEEEEEeCCccccCccCCCCcEEEEEeEEEEeecCCCCCcc
Confidence 357799999888775432 234789999999988764 2347799999877666666433343
No 94
>4a1k_A Putative L, D-transpeptidase YKUD; transferase, peptidoglycan synthesis; HET: CME; 1.75A {Bacillus subtilis} PDB: 4a1j_A 4a1i_A* 1y7m_A 3zqd_A 4a52_A*
Probab=28.13 E-value=7.5 Score=28.09 Aligned_cols=26 Identities=19% Similarity=0.446 Sum_probs=21.0
Q ss_pred CcceEEEEEec--CCcCCCCCCCEEEEe
Q 032599 62 ETGMIIFTARN--DQVDLMKEGTTVILR 87 (137)
Q Consensus 62 eTG~I~ltlW~--~~~~~i~~Gd~v~I~ 87 (137)
+-|||||.-|| +..+.+..|+.|.|.
T Consensus 137 ShGCIrl~~~d~~~L~~~v~~Gt~V~I~ 164 (165)
T 4a1k_A 137 SKGCIRMHNKDVIELASIVPNGTRVTIN 164 (165)
T ss_dssp ESSSEECCHHHHHHHHHHCCTTCEEEEE
T ss_pred cCCCcCCCHHHHHHHHhcCCCCCEEEEE
Confidence 56999999998 345667899999885
No 95
>3mxn_B RECQ-mediated genome instability protein 2; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_B 3nbh_B
Probab=26.24 E-value=1.2e+02 Score=21.87 Aligned_cols=36 Identities=11% Similarity=0.088 Sum_probs=28.0
Q ss_pred EEEeeCcceEEEEEecCCcC---CCCCCCEEEEeceEEc
Q 032599 57 CLVGDETGMIIFTARNDQVD---LMKEGTTVILRNAKID 92 (137)
Q Consensus 57 ~~VgDeTG~I~ltlW~~~~~---~i~~Gd~v~I~na~~~ 92 (137)
+++-|+||++.+..-++... .+++|+=|.+.+.+..
T Consensus 75 ~~LdDgTG~~~v~g~~~vp~g~p~l~~G~YVMV~G~v~~ 113 (150)
T 3mxn_B 75 ARLRDPSGDFSVRGLERVPRGRPCLVPGKYVMVMGVVQA 113 (150)
T ss_dssp EEEEETTEEEEEECGGGSCCCSCCCSTTCEEEEEEEEEE
T ss_pred EEEECCCceEEEeeccccCCCCcccCCCCEEEEEEEEEe
Confidence 68999999988766664432 3679999999998765
No 96
>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} SCOP: b.40.9.1
Probab=26.08 E-value=1.7e+02 Score=20.55 Aligned_cols=59 Identities=17% Similarity=0.138 Sum_probs=41.8
Q ss_pred CCceEEEEEEEcceeeeeccCCCccccceeEEEEEEeeCcceEEEEEecCCcCCCCCCCEEEEeceEE
Q 032599 24 SGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDETGMIIFTARNDQVDLMKEGTTVILRNAKI 91 (137)
Q Consensus 24 ~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgDeTG~I~ltlW~~~~~~i~~Gd~v~I~na~~ 91 (137)
+.+.|-+.|.. +.+ .|.. .+.-....|-|...+|+++-=.-..+++++|.-|...+.+.
T Consensus 29 ~~iRvgG~V~~-GSv---~r~~-----~~~~v~F~vtD~~~~v~V~Y~GilPDlFrEGqgVVa~G~l~ 87 (136)
T 1sr3_A 29 QRLRVGGMVMP-GSV---QRDP-----NSLKVTFTIYDAEGSVDVSYEGILPDLFREGQGVVVQGELE 87 (136)
T ss_dssp SEEEEEEEECT-TTC---EECS-----SSSEEEEEEECSSCEEEEEEESCCCTTCCTTSEEEEEEEEC
T ss_pred CEEEEeeEEeC-CcE---EEcC-----CCCEEEEEEEeCCcEEEEEECCCCCccccCCCeEEEEEEEC
Confidence 45666666653 222 2321 13456678899999998887778889999999999988875
No 97
>1vky_A S-adenosylmethionine:tRNA ribosyltransferase-ISOM; TM0574, struct genomics, JCSG, protein structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: e.53.1.1
Probab=24.91 E-value=85 Score=25.71 Aligned_cols=34 Identities=18% Similarity=0.299 Sum_probs=28.5
Q ss_pred EEee-CcceEEEEEecCCcCCCCCCCEEEEeceEE
Q 032599 58 LVGD-ETGMIIFTARNDQVDLMKEGTTVILRNAKI 91 (137)
Q Consensus 58 ~VgD-eTG~I~ltlW~~~~~~i~~Gd~v~I~na~~ 91 (137)
+|-| .||.|.=....+..+.+++||.+.+.|..|
T Consensus 41 Lvl~r~~g~i~h~~F~dl~~~L~~GDlLV~NdTrV 75 (347)
T 1vky_A 41 MVLHRKTQRIEHRIFREIIEYLEPGDLLVLNVSKV 75 (347)
T ss_dssp EEEETTTTEEEEEEGGGGGGGCCTTCEEEEEEEEC
T ss_pred EEEECCCCceeEeeHHhhHhhcCCCCEEEecCceE
Confidence 4455 489998888888889999999999999876
No 98
>3tur_A Mycobacteria tuberculosis LD-transpeptidase type; protein-peptidoglycan complex, peptidoglycan binding protein; HET: 0JC DGL 6CL; 1.72A {Mycobacterium tuberculosis} PDB: 3u1p_A 3u1q_A 3vae_A 3tx4_A 4huc_A
Probab=24.65 E-value=13 Score=29.57 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=22.9
Q ss_pred CcceEEEEEecC--CcCCCCCCCEEEEece
Q 032599 62 ETGMIIFTARND--QVDLMKEGTTVILRNA 89 (137)
Q Consensus 62 eTG~I~ltlW~~--~~~~i~~Gd~v~I~na 89 (137)
+-|||||.-.|. ..+.+..|+.|.|.|-
T Consensus 230 SHGCIrL~~~da~~Ly~~v~~GTpV~I~~s 259 (287)
T 3tur_A 230 SHGCLNVSPSNAQWFYDHVKRGDIVEVVNT 259 (287)
T ss_dssp BSSSEEECHHHHHHHHHHCCTTCEEEEESC
T ss_pred CccCcCCCHHHHHHHHHhCCCCCEEEEEeC
Confidence 679999998873 4466899999999985
No 99
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=24.53 E-value=1.5e+02 Score=19.44 Aligned_cols=74 Identities=19% Similarity=0.128 Sum_probs=43.6
Q ss_pred eeeccCCCCCCCceEEEEEEEcceeeeeccCCCccccceeEEEEEEeeCcceEEEEE---ec---CCcCCCCCCCEEEEe
Q 032599 14 TKVDQLRPGTSGHTLTVKVVSTKMVLQKGRGDGTQVRQMRIAECLVGDETGMIIFTA---RN---DQVDLMKEGTTVILR 87 (137)
Q Consensus 14 ~kI~dL~p~~~~v~l~~kVl~~~~~~~~~R~DGs~~~~~~v~~~~VgDeTG~I~ltl---W~---~~~~~i~~Gd~v~I~ 87 (137)
....+++.|+ .+.|+|.++.+---| .+.-.+...|.+.... |. +..+.++.||.|+++
T Consensus 14 ~~~~~l~~G~---i~~G~V~~v~~fG~f-------------V~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Gd~V~vk 77 (119)
T 1wi5_A 14 LSAEALKPGM---LLTGTVSSLEDHGYL-------------VDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCI 77 (119)
T ss_dssp CCTTTCCTTC---EEEEEEEEECSSEEE-------------EECCCSSCEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEE
T ss_pred ccHhcCCCCC---EEEEEEEEEeCceEE-------------EEECCCCeEEEEEEecccccccccCccCEeCCCCEEEEE
Confidence 3445777766 599999888653222 2211111223332222 32 223568999999988
Q ss_pred ceEEcccCCeEEEEeC
Q 032599 88 NAKIDMFKGSMRLAVD 103 (137)
Q Consensus 88 na~~~~~~g~~~L~vg 103 (137)
=..+...++++.|++-
T Consensus 78 V~~vd~~~~~i~Lslk 93 (119)
T 1wi5_A 78 VEKVKGNGGVVSLSVG 93 (119)
T ss_dssp EEECCTTSCEEEEECC
T ss_pred EEEEeCCCCEEEEEEc
Confidence 7777777788888764
No 100
>2yma_A YOS9P, protein OS-9 homolog; carbohydrate binding protein, quality control, endoplasmic reticulum-associated protein degradation; 2.54A {Saccharomyces cerevisiae}
Probab=24.19 E-value=1e+02 Score=22.57 Aligned_cols=47 Identities=19% Similarity=0.340 Sum_probs=33.1
Q ss_pred CCCCCEEEEeceEEcccCC---eEEEEeCCcEeEEEcCCCceEEc-CCCCc
Q 032599 78 MKEGTTVILRNAKIDMFKG---SMRLAVDKWGRVEVAEPANFTVK-EDNNL 124 (137)
Q Consensus 78 i~~Gd~v~I~na~~~~~~g---~~~L~vg~~g~I~~~~~~~~~vn-~~~n~ 124 (137)
+++||.+.+..-.+.+..+ .++|.++..+.-+..=+..++|+ +..|+
T Consensus 79 ~~~gD~ftW~adVVD~~G~~lt~l~l~i~~~~~AeI~~d~~l~F~~~~gNf 129 (161)
T 2yma_A 79 LQPGDSCVWLAEVVDMKDRFQTTLSLNILNSQRAEIFFNKTFTFNEDNGNF 129 (161)
T ss_dssp CCTTCEEEEEEEEECTTCCEEEEEEEEECSSSCEEEEEETTCCCCTTCCSE
T ss_pred CCCCCeEEEEEEEEecCCCEEEEEEEEecCCCeEEEEEeeeEEecCCCCCe
Confidence 4789999999888888765 67788887655444445567777 44443
No 101
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=23.69 E-value=2.4e+02 Score=21.39 Aligned_cols=77 Identities=12% Similarity=0.107 Sum_probs=46.3
Q ss_pred EEEEEEeeCc--ceEEEEEecCCcCCCCCCCEEEEeceEEcccCCeEEEEeCCcEeEEEcCCCc---eEEcCCCCccccc
Q 032599 54 IAECLVGDET--GMIIFTARNDQVDLMKEGTTVILRNAKIDMFKGSMRLAVDKWGRVEVAEPAN---FTVKEDNNLSLIE 128 (137)
Q Consensus 54 v~~~~VgDeT--G~I~ltlW~~~~~~i~~Gd~v~I~na~~~~~~g~~~L~vg~~g~I~~~~~~~---~~vn~~~n~S~~e 128 (137)
..-.+-|+.+ |.+.|......+ .+++||.|.-.+- -..|--. |-||+=..|+..+... +.+.-..|++.++
T Consensus 145 ~~Gil~G~~~~~~~l~l~~i~~~~-~i~~GD~VvTSGl-~gifP~G--ipVG~V~~V~~~~~~~~~~i~v~P~ad~~~l~ 220 (255)
T 2j5u_A 145 AFGIINGYDSDTKLLELKQLPYDM-KFKKGQKVVTSGL-GGKFPAG--IFIGTIEKVETDKMGLSQTAFIKPGADMYDLN 220 (255)
T ss_dssp EEEEEEEEETTTTEEEEEEEETTS-CCCTTCEEEECCT-TSSSCTT--CEEEEEEEEEECTTSSEEEEEEEESSCCSSCC
T ss_pred EEEEEEccCCCCCcEEEEECCCCC-CCCCCCEEEECCC-CCcCCCC--CEEEEEEEEeeCCCCceEEEEEEECCCcccCe
Confidence 4445567665 888888776443 5899999875543 2334322 3344444444433222 3577788999999
Q ss_pred eeeeee
Q 032599 129 YELVNV 134 (137)
Q Consensus 129 ye~~~~ 134 (137)
|=+|-.
T Consensus 221 ~V~Vi~ 226 (255)
T 2j5u_A 221 HVTVLK 226 (255)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 876643
No 102
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=23.58 E-value=1.4e+02 Score=18.67 Aligned_cols=16 Identities=19% Similarity=0.146 Sum_probs=13.6
Q ss_pred CcCCCCCCCEEEEece
Q 032599 74 QVDLMKEGTTVILRNA 89 (137)
Q Consensus 74 ~~~~i~~Gd~v~I~na 89 (137)
....+++||.|++.++
T Consensus 14 LrK~F~~GDHVkVi~G 29 (69)
T 2do3_A 14 LRKYFKMGDHVKVIAG 29 (69)
T ss_dssp CCSSCCTTCEEEESSS
T ss_pred ceeeccCCCeEEEecc
Confidence 4456899999999998
No 103
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=23.48 E-value=39 Score=22.57 Aligned_cols=27 Identities=11% Similarity=0.224 Sum_probs=19.3
Q ss_pred ceEEEEEecCCcCCCCCCCEEEEeceEE
Q 032599 64 GMIIFTARNDQVDLMKEGTTVILRNAKI 91 (137)
Q Consensus 64 G~I~ltlW~~~~~~i~~Gd~v~I~na~~ 91 (137)
|.+.+++ ++..-.+++||++.|--+..
T Consensus 68 G~~~~~~-~g~~~~l~~GD~v~ip~g~~ 94 (119)
T 3lwc_A 68 GRLSVST-DGETVTAGPGEIVYMPKGET 94 (119)
T ss_dssp EEEEEEE-TTEEEEECTTCEEEECTTCE
T ss_pred CEEEEEE-CCEEEEECCCCEEEECCCCE
Confidence 6667766 44444589999999986654
No 104
>2qf4_A Cell shape determining protein MREC; filament A-lytic protease fold, structural protein; 1.20A {Streptococcus pneumoniae} PDB: 2qf5_A
Probab=23.12 E-value=2.1e+02 Score=20.40 Aligned_cols=76 Identities=12% Similarity=0.107 Sum_probs=45.6
Q ss_pred EEEEEEeeCc--ceEEEEEecCCcCCCCCCCEEEEeceEEcccCCeEEEEeCCcEeEEEcCC---CceEEcCCCCccccc
Q 032599 54 IAECLVGDET--GMIIFTARNDQVDLMKEGTTVILRNAKIDMFKGSMRLAVDKWGRVEVAEP---ANFTVKEDNNLSLIE 128 (137)
Q Consensus 54 v~~~~VgDeT--G~I~ltlW~~~~~~i~~Gd~v~I~na~~~~~~g~~~L~vg~~g~I~~~~~---~~~~vn~~~n~S~~e 128 (137)
..-.+-|+.. +.+.|...... ..+++||.|.-.+- -..|--. |-||+=.+++..+. ....+.-..|++.++
T Consensus 84 ~~Gil~G~~~~~~~l~l~~i~~~-~~i~~GD~vvTSGl-~g~fP~G--ipVG~V~~v~~~~~~~~~~i~v~p~ad~~~l~ 159 (172)
T 2qf4_A 84 IYGIIIGYDKENDVLKISQLNSN-SDISAGDKVTTGGL-GNFNVAD--IPVGEVVATTHSTDYLTREVTVKLSADTHNVD 159 (172)
T ss_dssp EEEEEEEEETTTTEEEEECCSCC-CCCCTTCEEEEECC-SSSCCEE--EEEEEEEEEESTTCSSCCEEEEEESCCCTTCC
T ss_pred EEEEEEccCCCCCeEEEEECCCC-CCCCCCCEEEECCC-CCcCCCC--CEEEEEEEEecCCCCcEEEEEEEECCCcccCe
Confidence 4444556655 77888766543 35899999875553 2334333 44444444443321 134578888999999
Q ss_pred eeeee
Q 032599 129 YELVN 133 (137)
Q Consensus 129 ye~~~ 133 (137)
|=++-
T Consensus 160 ~V~Vi 164 (172)
T 2qf4_A 160 VIELV 164 (172)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 87664
No 105
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=20.63 E-value=78 Score=27.08 Aligned_cols=31 Identities=16% Similarity=0.080 Sum_probs=26.3
Q ss_pred eEEEEEecCCcCCCCCCCEEEEeceEEcccC
Q 032599 65 MIIFTARNDQVDLMKEGTTVILRNAKIDMFK 95 (137)
Q Consensus 65 ~I~ltlW~~~~~~i~~Gd~v~I~na~~~~~~ 95 (137)
++.+.|-++..+.+++||.|.|.|.+...+.
T Consensus 206 ~~~v~l~~dlv~~~~pGd~v~v~Gi~~~~~~ 236 (595)
T 3f9v_A 206 QLEIILEDDLVDSARPGDRVKVTGILDIKQD 236 (595)
T ss_dssp EEEEEEEGGGTTCSCSSCEEEEEEECCCCCS
T ss_pred eEEEEEecccccccccCCEEEEEEEEEeccc
Confidence 3677788888899999999999999987654
No 106
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.29 E-value=23 Score=21.27 Aligned_cols=19 Identities=11% Similarity=0.151 Sum_probs=13.9
Q ss_pred CCCCCCEEEEeceEEcccC
Q 032599 77 LMKEGTTVILRNAKIDMFK 95 (137)
Q Consensus 77 ~i~~Gd~v~I~na~~~~~~ 95 (137)
.+++||.|+|..+--+-+.
T Consensus 7 ~f~~GD~V~V~~Gpf~g~~ 25 (59)
T 2e6z_A 7 GFQPGDNVEVCEGELINLQ 25 (59)
T ss_dssp SCCTTSEEEECSSTTTTCE
T ss_pred cCCCCCEEEEeecCCCCCE
Confidence 4689999999877544443
Done!