BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032603
(137 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZW5|A Chain A, Crystal Structure Of The Human Glyoxalase
Domain-Containing Protein 5
pdb|3ZW5|B Chain B, Crystal Structure Of The Human Glyoxalase
Domain-Containing Protein 5
Length = 147
Score = 29.6 bits (65), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 12/77 (15%)
Query: 13 NLPKAGKNINPKDNH-ISFQCENMAIVERRLKEMKIDYVKS---RVEEGGIN-------V 61
NL + GK PK H + + I E L+EM I ++K+ +EEG + +
Sbjct: 71 NLHEVGKEFEPKAAHPVPGSLDICLITEVPLEEM-IQHLKACDVPIEEGPVPRTGAKGPI 129
Query: 62 DQLFFHDPDGSMIEICN 78
++F DPD ++IE+ N
Sbjct: 130 MSIYFRDPDRNLIEVSN 146
>pdb|2ZA0|A Chain A, Crystal Structure Of Mouse Glyoxalase I Complexed With
Methyl-Gerfelin
pdb|2ZA0|B Chain B, Crystal Structure Of Mouse Glyoxalase I Complexed With
Methyl-Gerfelin
Length = 184
Score = 29.3 bits (64), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 20 NINPKD-NHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 78
N +P+ HI ++ +R +E+ + +VK + ++G + F DPDG IEI N
Sbjct: 119 NSDPRGFGHIGIAVPDVYSACKRFEELGVKFVK-KPDDGKMK-GLAFIQDPDGYWIEILN 176
Query: 79 CDVLPVV 85
+ + +
Sbjct: 177 PNKIATI 183
>pdb|3VW9|A Chain A, Human Glyoxalase I With An N-Hydroxypyridone Inhibitor
pdb|3VW9|B Chain B, Human Glyoxalase I With An N-Hydroxypyridone Inhibitor
Length = 187
Score = 28.9 bits (63), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 20 NINPKD-NHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 78
N +P+ HI ++ +R +E+ + +VK + ++G + F DPDG IEI N
Sbjct: 122 NSDPRGFGHIGIAVPDVYSACKRFEELGVKFVK-KPDDGKMK-GLAFIQDPDGYWIEILN 179
>pdb|1FRO|A Chain A, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|B Chain B, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|C Chain C, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|D Chain D, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1QIN|A Chain A, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1QIN|B Chain B, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1QIP|A Chain A, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|B Chain B, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|C Chain C, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|D Chain D, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
Length = 183
Score = 28.9 bits (63), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 20 NINPKD-NHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 78
N +P+ HI ++ +R +E+ + +VK + ++G + F DPDG IEI N
Sbjct: 118 NSDPRGFGHIGIAVPDVYSACKRFEELGVKFVK-KPDDGKMK-GLAFIQDPDGYWIEILN 175
>pdb|1F1R|A Chain A, Crystal Structure Of Homoprotocatechuate 2,3-Dioxygenase
From Arthrobacter Globiformis (Native, Non-Cryo)
pdb|1F1R|B Chain B, Crystal Structure Of Homoprotocatechuate 2,3-Dioxygenase
From Arthrobacter Globiformis (Native, Non-Cryo)
pdb|1F1U|A Chain A, Crystal Structure Of Homoprotocatechuate 2,3-dioxygenase
From Arthrobacter Globiformis (native, Low Temperature)
pdb|1F1U|B Chain B, Crystal Structure Of Homoprotocatechuate 2,3-dioxygenase
From Arthrobacter Globiformis (native, Low Temperature)
pdb|1F1V|A Chain A, Anaerobic Substrate Complex Of Homoprotocatechuate
2,3-Dioxygenase From Arthrobacter Globiformis. (Complex
With 3,4- Dihydroxyphenylacetate)
pdb|1F1V|B Chain B, Anaerobic Substrate Complex Of Homoprotocatechuate
2,3-Dioxygenase From Arthrobacter Globiformis. (Complex
With 3,4- Dihydroxyphenylacetate)
Length = 323
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 22 NPKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEG----GI-NVDQLFFHDPDGSMIEI 76
P+ +H++F + + +M + R+E G G+ N L+ DPDG IEI
Sbjct: 209 GPRMHHVAFATHEKHNIIQICDKMGALRISDRIERGPGRHGVSNAFYLYILDPDGHRIEI 268
Query: 77 CNCD 80
D
Sbjct: 269 YTQD 272
>pdb|3EY7|A Chain A, Structure From The Mobile Metagenome Of V. Cholerae.
Integron Cassette Protein Vch_cass1
pdb|3EY7|B Chain B, Structure From The Mobile Metagenome Of V. Cholerae.
Integron Cassette Protein Vch_cass1
Length = 133
Score = 25.8 bits (55), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/76 (18%), Positives = 32/76 (42%), Gaps = 10/76 (13%)
Query: 13 NLPKAGKNINPKDNHISFQCENMAIVE--------RRLKEMKIDYVKSRVEEGGIN--VD 62
NL + G PK ++ ++ + + +++ + + V+ G +
Sbjct: 54 NLHQLGNEFEPKAQNVRVGSADLCFITDTVLSDAXKHVEDQGVTIXEGPVKRTGAQGAIT 113
Query: 63 QLFFHDPDGSMIEICN 78
+F DPDG++IE+
Sbjct: 114 SFYFRDPDGNLIEVST 129
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,892,276
Number of Sequences: 62578
Number of extensions: 139298
Number of successful extensions: 278
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 278
Number of HSP's gapped (non-prelim): 8
length of query: 137
length of database: 14,973,337
effective HSP length: 89
effective length of query: 48
effective length of database: 9,403,895
effective search space: 451386960
effective search space used: 451386960
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)