Query 032603
Match_columns 137
No_of_seqs 128 out of 1275
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 03:34:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032603.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032603hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08353 Glo_EDI_BRP_like_7 Thi 99.4 1.8E-12 3.9E-17 93.4 9.9 57 22-79 85-141 (142)
2 PRK11478 putative lyase; Provi 99.4 8.2E-12 1.8E-16 88.0 10.2 55 23-78 74-128 (129)
3 KOG2944 Glyoxalase [Carbohydra 99.3 1.6E-11 3.5E-16 95.6 8.2 58 20-79 110-168 (170)
4 PRK10291 glyoxalase I; Provisi 99.3 2E-11 4.4E-16 87.2 7.8 59 23-81 64-122 (129)
5 cd07253 Glo_EDI_BRP_like_2 Thi 99.2 9E-11 1.9E-15 80.8 9.5 59 21-79 64-125 (125)
6 cd09011 Glo_EDI_BRP_like_23 Th 99.2 3.6E-11 7.7E-16 84.5 7.5 55 24-79 64-119 (120)
7 cd07241 Glo_EDI_BRP_like_3 Thi 99.2 7.4E-11 1.6E-15 81.7 8.4 54 23-77 69-125 (125)
8 PLN02367 lactoylglutathione ly 99.2 5.8E-11 1.2E-15 96.9 8.2 59 23-83 168-226 (233)
9 cd08352 Glo_EDI_BRP_like_1 Thi 99.2 1.7E-10 3.6E-15 79.4 9.3 56 22-78 70-125 (125)
10 TIGR03645 glyox_marine lactoyl 99.2 1.3E-10 2.8E-15 87.7 9.4 60 22-81 91-153 (162)
11 cd08342 HPPD_N_like N-terminal 99.2 8.9E-11 1.9E-15 85.2 8.1 59 22-81 67-125 (136)
12 cd07245 Glo_EDI_BRP_like_9 Thi 99.2 1.1E-10 2.4E-15 78.3 8.0 68 3-76 47-114 (114)
13 cd08359 Glo_EDI_BRP_like_22 Th 99.2 1.7E-10 3.6E-15 80.3 9.0 54 24-78 66-119 (119)
14 cd07233 Glyoxalase_I Glyoxalas 99.2 2.4E-10 5.2E-15 79.1 9.4 52 24-77 70-121 (121)
15 PLN03042 Lactoylglutathione ly 99.2 1.1E-10 2.4E-15 91.7 8.6 62 23-86 120-181 (185)
16 TIGR03081 metmalonyl_epim meth 99.2 6.6E-11 1.4E-15 82.7 6.2 57 22-78 70-128 (128)
17 cd07263 Glo_EDI_BRP_like_16 Th 99.2 3.3E-10 7.1E-15 77.2 9.0 55 22-78 65-119 (119)
18 PF12681 Glyoxalase_2: Glyoxal 99.1 1.6E-10 3.4E-15 78.7 7.1 55 22-77 54-108 (108)
19 cd07238 Glo_EDI_BRP_like_5 Thi 99.1 3.7E-10 8E-15 78.1 8.6 56 23-79 56-111 (112)
20 PRK06724 hypothetical protein; 99.1 2.6E-10 5.6E-15 83.6 7.5 58 23-80 62-124 (128)
21 cd08355 Glo_EDI_BRP_like_14 Th 99.1 8.8E-10 1.9E-14 77.3 9.8 56 23-79 67-122 (122)
22 cd08349 BLMA_like Bleomycin bi 99.1 5.6E-10 1.2E-14 76.0 8.5 55 23-78 57-112 (112)
23 cd08350 BLMT_like BLMT, a bleo 99.1 6E-10 1.3E-14 78.4 8.8 55 25-79 59-119 (120)
24 cd07247 SgaA_N_like N-terminal 99.1 5.8E-10 1.3E-14 77.0 8.1 55 23-78 60-114 (114)
25 TIGR00068 glyox_I lactoylgluta 99.1 5.2E-10 1.1E-14 82.4 7.6 58 23-80 85-142 (150)
26 cd07265 2_3_CTD_N N-terminal d 99.1 6.2E-10 1.4E-14 78.2 7.7 56 23-79 60-119 (122)
27 cd08357 Glo_EDI_BRP_like_18 Th 99.1 8.2E-10 1.8E-14 76.8 8.1 56 24-79 65-125 (125)
28 cd08364 FosX FosX, a fosfomyci 99.1 5.2E-10 1.1E-14 80.8 7.4 55 24-79 66-122 (131)
29 cd07242 Glo_EDI_BRP_like_6 Thi 99.1 1.8E-09 4E-14 75.8 10.0 57 22-78 66-127 (128)
30 cd07264 Glo_EDI_BRP_like_15 Th 99.1 1.1E-09 2.3E-14 76.4 8.7 56 23-79 70-125 (125)
31 cd07246 Glo_EDI_BRP_like_8 Thi 99.1 1.6E-09 3.5E-14 74.8 9.3 55 23-78 67-121 (122)
32 cd09012 Glo_EDI_BRP_like_24 Th 99.1 7.4E-10 1.6E-14 78.2 7.5 53 24-78 68-123 (124)
33 cd08351 ChaP_like ChaP, an enz 99.1 7.9E-10 1.7E-14 78.3 7.6 56 24-79 58-121 (123)
34 cd07243 2_3_CTD_C C-terminal d 99.1 7.5E-10 1.6E-14 81.9 7.7 58 22-79 65-125 (143)
35 cd08347 PcpA_C_like C-terminal 99.0 1.3E-09 2.8E-14 82.2 8.8 56 22-80 63-121 (157)
36 cd07257 THT_oxygenase_C The C- 99.0 8.8E-10 1.9E-14 82.2 7.4 57 22-79 65-125 (153)
37 cd07261 Glo_EDI_BRP_like_11 Th 99.0 3.4E-09 7.3E-14 73.3 9.3 55 22-78 57-114 (114)
38 cd08346 PcpA_N_like N-terminal 99.0 2E-09 4.4E-14 74.3 7.7 53 22-77 71-126 (126)
39 PRK04101 fosfomycin resistance 99.0 1.6E-09 3.5E-14 78.8 7.1 57 23-80 62-120 (139)
40 cd08360 MhqB_like_C C-terminal 99.0 1.8E-09 3.8E-14 78.0 7.1 56 23-78 61-119 (134)
41 cd08354 Glo_EDI_BRP_like_13 Th 99.0 4.5E-09 9.8E-14 72.7 8.7 54 23-78 66-121 (122)
42 cd06587 Glo_EDI_BRP_like This 99.0 4.4E-09 9.4E-14 69.2 8.1 55 21-76 58-112 (112)
43 cd08363 FosB FosB, a fosfomyci 99.0 1.7E-09 3.8E-14 78.2 6.5 58 22-80 57-116 (131)
44 cd08345 Fosfomycin_RP Fosfomyc 99.0 1.7E-09 3.7E-14 74.3 6.1 55 23-78 54-110 (113)
45 cd07235 MRD Mitomycin C resist 99.0 4.2E-09 9.1E-14 73.6 7.9 53 24-77 66-121 (122)
46 PLN02300 lactoylglutathione ly 98.9 3.8E-09 8.2E-14 86.1 8.6 63 21-83 90-152 (286)
47 cd07249 MMCE Methylmalonyl-CoA 98.9 3.1E-09 6.8E-14 73.7 7.0 58 21-78 69-128 (128)
48 cd08343 ED_TypeI_classII_C C-t 98.9 3.9E-09 8.4E-14 75.6 7.6 59 22-80 57-118 (131)
49 cd07255 Glo_EDI_BRP_like_12 Th 98.9 9E-09 2E-13 71.9 9.1 56 21-79 61-119 (125)
50 cd07239 BphC5-RK37_C_like C-te 98.9 3.2E-09 7E-14 78.7 7.1 58 22-79 57-117 (144)
51 cd07267 THT_Oxygenase_N N-term 98.9 4.6E-09 1E-13 73.5 7.4 54 23-78 56-109 (113)
52 cd07262 Glo_EDI_BRP_like_19 Th 98.9 4.9E-09 1.1E-13 73.4 7.4 54 24-77 64-122 (123)
53 cd07258 PpCmtC_C C-terminal do 98.9 4.8E-09 1E-13 77.9 7.6 58 22-79 54-114 (141)
54 cd08361 PpCmtC_N N-terminal do 98.9 4.6E-09 1E-13 75.1 7.2 57 23-79 58-119 (124)
55 cd08356 Glo_EDI_BRP_like_17 Th 98.9 3.8E-09 8.3E-14 74.5 6.6 53 25-78 56-113 (113)
56 cd08362 BphC5-RrK37_N_like N-t 98.9 4.7E-09 1E-13 72.8 6.7 58 22-79 56-117 (120)
57 cd07254 Glo_EDI_BRP_like_20 Th 98.9 7E-09 1.5E-13 72.5 7.7 57 23-79 57-117 (120)
58 cd07237 BphC1-RGP6_C_like C-te 98.9 4.2E-09 9.2E-14 78.6 6.7 57 23-79 72-131 (154)
59 cd07266 HPCD_N_class_II N-term 98.9 3.7E-09 8E-14 73.8 6.0 55 23-78 59-117 (121)
60 cd09013 BphC-JF8_N_like N-term 98.9 6E-09 1.3E-13 73.3 6.3 55 22-78 60-117 (121)
61 cd08348 BphC2-C3-RGP6_C_like T 98.9 2.3E-08 5.1E-13 71.0 9.4 55 23-80 64-121 (134)
62 cd07252 BphC1-RGP6_N_like N-te 98.9 1.7E-08 3.6E-13 71.3 8.2 56 23-79 56-117 (120)
63 cd07244 FosA FosA, a Fosfomyci 98.8 6.8E-09 1.5E-13 73.3 5.7 53 23-79 56-110 (121)
64 cd08344 MhqB_like_N N-terminal 98.8 1E-08 2.2E-13 71.5 6.3 52 25-79 56-109 (112)
65 cd07240 ED_TypeI_classII_N N-t 98.8 1.5E-08 3.3E-13 69.6 7.1 56 23-79 56-114 (117)
66 cd07256 HPCD_C_class_II C-term 98.8 1.3E-08 2.9E-13 76.4 7.3 59 22-80 61-124 (161)
67 cd07251 Glo_EDI_BRP_like_10 Th 98.8 3.3E-08 7.1E-13 68.1 8.1 54 24-78 64-120 (121)
68 TIGR03211 catechol_2_3 catecho 98.8 2.2E-08 4.7E-13 81.3 7.1 61 25-86 208-271 (303)
69 cd09014 BphC-JF8_C_like C-term 98.8 2.7E-08 5.9E-13 75.3 6.9 58 24-81 69-129 (166)
70 PF00903 Glyoxalase: Glyoxalas 98.7 4E-08 8.7E-13 67.4 6.5 53 24-76 73-128 (128)
71 PLN02300 lactoylglutathione ly 98.7 7.4E-08 1.6E-12 78.5 7.6 60 22-81 221-280 (286)
72 TIGR02295 HpaD 3,4-dihydroxyph 98.7 6.3E-08 1.4E-12 78.0 7.0 57 22-79 194-256 (294)
73 TIGR03213 23dbph12diox 2,3-dih 98.6 9.4E-08 2E-12 77.3 7.5 56 22-78 204-262 (286)
74 TIGR02295 HpaD 3,4-dihydroxyph 98.6 1.3E-07 2.9E-12 76.1 7.5 55 22-79 58-115 (294)
75 TIGR03211 catechol_2_3 catecho 98.5 2.5E-07 5.4E-12 75.1 7.4 58 22-80 58-119 (303)
76 TIGR03213 23dbph12diox 2,3-dih 98.5 5.7E-07 1.2E-11 72.7 7.4 55 23-78 57-117 (286)
77 cd08358 Glo_EDI_BRP_like_21 Th 98.4 1.2E-06 2.7E-11 65.0 7.0 45 26-78 82-126 (127)
78 PF13669 Glyoxalase_4: Glyoxal 97.9 7.1E-06 1.5E-10 57.5 2.9 50 2-54 49-98 (109)
79 COG2514 Predicted ring-cleavag 97.9 4.7E-05 1E-09 63.6 7.0 56 21-79 68-126 (265)
80 COG3565 Predicted dioxygenase 97.5 0.00069 1.5E-08 51.1 7.4 78 2-81 48-131 (138)
81 cd06588 PhnB_like Escherichia 97.4 0.00038 8.1E-09 50.0 5.8 51 25-77 75-128 (128)
82 COG0346 GloA Lactoylglutathion 97.3 0.00013 2.9E-09 48.6 2.0 52 24-78 84-138 (138)
83 COG3324 Predicted enzyme relat 97.2 0.0025 5.3E-08 48.0 7.7 57 23-80 70-126 (127)
84 PF13669 Glyoxalase_4: Glyoxal 97.1 0.0033 7.2E-08 43.9 7.3 57 26-83 1-59 (109)
85 COG3607 Predicted lactoylgluta 96.8 0.0025 5.3E-08 48.4 5.0 53 26-80 73-128 (133)
86 cd07250 HPPD_C_like C-terminal 96.6 0.0024 5.2E-08 49.8 3.9 32 22-53 81-112 (191)
87 TIGR01263 4HPPD 4-hydroxypheny 96.0 0.014 3.1E-07 49.2 5.5 34 21-54 69-102 (353)
88 COG2764 PhnB Uncharacterized p 95.8 0.079 1.7E-06 40.2 8.2 58 22-80 75-132 (136)
89 cd08353 Glo_EDI_BRP_like_7 Thi 95.8 0.061 1.3E-06 38.3 7.3 57 24-80 3-70 (142)
90 TIGR01263 4HPPD 4-hydroxypheny 95.6 0.013 2.7E-07 49.5 3.6 58 22-79 236-310 (353)
91 cd08352 Glo_EDI_BRP_like_1 Thi 95.5 0.16 3.5E-06 34.3 8.3 60 24-84 3-63 (125)
92 cd08346 PcpA_N_like N-terminal 94.9 0.25 5.4E-06 33.5 7.8 58 24-81 1-62 (126)
93 TIGR03645 glyox_marine lactoyl 94.4 0.27 5.8E-06 36.9 7.5 58 24-81 4-79 (162)
94 cd07249 MMCE Methylmalonyl-CoA 93.7 0.37 8E-06 32.8 6.6 56 25-81 1-57 (128)
95 PLN02875 4-hydroxyphenylpyruva 93.4 0.073 1.6E-06 46.8 3.2 58 22-79 260-340 (398)
96 cd07241 Glo_EDI_BRP_like_3 Thi 93.4 0.68 1.5E-05 31.3 7.5 56 24-81 1-58 (125)
97 cd07245 Glo_EDI_BRP_like_9 Thi 93.2 0.95 2.1E-05 29.5 7.8 54 25-82 1-55 (114)
98 PF13468 Glyoxalase_3: Glyoxal 93.2 0.14 3.1E-06 38.6 4.2 54 25-80 1-55 (175)
99 PRK10148 hypothetical protein; 93.0 0.49 1.1E-05 35.6 6.8 57 25-83 86-145 (147)
100 cd07263 Glo_EDI_BRP_like_16 Th 92.2 1.1 2.3E-05 29.8 7.1 52 27-80 1-55 (119)
101 PRK01037 trmD tRNA (guanine-N( 92.1 0.26 5.5E-06 43.0 4.7 50 25-78 301-353 (357)
102 PF13670 PepSY_2: Peptidase pr 92.0 0.79 1.7E-05 31.0 6.2 42 34-77 30-71 (83)
103 cd06587 Glo_EDI_BRP_like This 91.6 1.1 2.4E-05 28.6 6.4 52 27-82 1-53 (112)
104 PF00903 Glyoxalase: Glyoxalas 91.6 1.7 3.7E-05 29.1 7.5 57 24-81 1-59 (128)
105 KOG2943 Predicted glyoxalase [ 91.2 0.53 1.1E-05 39.7 5.5 50 20-78 93-142 (299)
106 cd07233 Glyoxalase_I Glyoxalas 90.7 2 4.4E-05 28.9 7.3 55 25-80 1-59 (121)
107 cd07242 Glo_EDI_BRP_like_6 Thi 90.5 1.6 3.5E-05 30.0 6.7 52 24-81 1-56 (128)
108 PF13468 Glyoxalase_3: Glyoxal 89.9 1.1 2.4E-05 33.8 5.9 60 22-81 75-139 (175)
109 PRK11478 putative lyase; Provi 89.6 2 4.3E-05 29.6 6.6 56 24-80 6-62 (129)
110 cd07255 Glo_EDI_BRP_like_12 Th 89.0 2.5 5.4E-05 28.8 6.7 51 24-81 2-54 (125)
111 COG3185 4-hydroxyphenylpyruvat 86.8 0.5 1.1E-05 41.3 2.4 62 22-85 243-320 (363)
112 cd07250 HPPD_C_like C-terminal 86.6 3 6.6E-05 32.3 6.6 58 24-81 3-65 (191)
113 cd08342 HPPD_N_like N-terminal 86.0 4.8 0.0001 28.7 6.9 52 25-80 1-53 (136)
114 TIGR03081 metmalonyl_epim meth 85.9 3.8 8.2E-05 27.9 6.1 53 24-79 1-55 (128)
115 cd08347 PcpA_C_like C-terminal 84.2 6.5 0.00014 29.3 7.2 52 24-80 1-54 (157)
116 cd08348 BphC2-C3-RGP6_C_like T 83.7 8.6 0.00019 26.7 7.3 53 24-81 1-56 (134)
117 PLN03042 Lactoylglutathione ly 83.0 10 0.00023 29.6 8.2 32 22-53 25-57 (185)
118 cd04895 ACT_ACR_1 ACT domain-c 82.6 4.1 8.8E-05 27.6 5.0 41 35-75 15-56 (72)
119 cd08358 Glo_EDI_BRP_like_21 Th 82.1 18 0.00038 26.6 8.7 65 24-89 2-81 (127)
120 PF14696 Glyoxalase_5: Hydroxy 81.7 7.9 0.00017 29.4 6.8 57 21-79 70-126 (139)
121 cd08364 FosX FosX, a fosfomyci 80.9 10 0.00022 26.8 6.9 56 24-80 4-60 (131)
122 cd08360 MhqB_like_C C-terminal 80.3 13 0.00028 26.2 7.3 50 24-79 3-56 (134)
123 cd08344 MhqB_like_N N-terminal 79.2 12 0.00026 25.3 6.6 28 24-51 2-29 (112)
124 cd07237 BphC1-RGP6_C_like C-te 79.0 17 0.00037 26.6 7.8 58 22-79 7-68 (154)
125 cd07240 ED_TypeI_classII_N N-t 78.2 14 0.00031 24.5 6.7 48 24-78 2-52 (117)
126 cd07257 THT_oxygenase_C The C- 78.2 10 0.00022 27.8 6.3 46 24-71 1-49 (153)
127 cd07247 SgaA_N_like N-terminal 78.1 14 0.00031 24.6 6.6 51 26-80 2-53 (114)
128 PRK04101 fosfomycin resistance 77.0 16 0.00036 25.9 7.0 50 24-81 4-54 (139)
129 cd07235 MRD Mitomycin C resist 77.0 10 0.00022 25.7 5.7 49 25-78 1-49 (122)
130 cd04882 ACT_Bt0572_2 C-termina 76.9 5.1 0.00011 24.5 3.8 26 24-49 39-64 (65)
131 cd08343 ED_TypeI_classII_C C-t 76.4 20 0.00044 25.0 7.2 53 26-80 1-55 (131)
132 cd07262 Glo_EDI_BRP_like_19 Th 76.4 21 0.00046 24.2 8.2 50 25-80 1-55 (123)
133 PF14133 DUF4300: Domain of un 76.4 6.3 0.00014 32.8 5.2 38 35-77 150-187 (250)
134 KOG0638 4-hydroxyphenylpyruvat 76.3 4.8 0.0001 35.3 4.6 65 23-88 90-163 (381)
135 PF14506 CppA_N: CppA N-termin 75.5 22 0.00048 26.9 7.4 57 22-82 61-117 (125)
136 cd04897 ACT_ACR_3 ACT domain-c 75.0 17 0.00037 24.7 6.3 40 35-74 15-55 (75)
137 cd07256 HPCD_C_class_II C-term 74.4 15 0.00032 27.2 6.4 45 24-69 3-48 (161)
138 cd08351 ChaP_like ChaP, an enz 73.9 17 0.00036 25.1 6.2 49 24-79 4-53 (123)
139 cd07243 2_3_CTD_C C-terminal d 73.5 15 0.00032 26.7 6.1 30 24-53 6-36 (143)
140 cd09014 BphC-JF8_C_like C-term 73.3 23 0.00049 26.4 7.2 30 24-53 6-36 (166)
141 PF07063 DUF1338: Domain of un 73.0 7.2 0.00016 33.2 4.8 29 22-50 182-216 (302)
142 PLN02367 lactoylglutathione ly 70.9 25 0.00054 29.0 7.4 30 24-53 75-105 (233)
143 KOG2943 Predicted glyoxalase [ 69.8 11 0.00025 31.9 5.2 58 24-81 210-272 (299)
144 COG0346 GloA Lactoylglutathion 69.1 8.8 0.00019 24.9 3.7 30 24-53 2-32 (138)
145 cd08363 FosB FosB, a fosfomyci 69.1 22 0.00047 25.2 6.0 49 25-81 1-50 (131)
146 PRK06724 hypothetical protein; 68.2 24 0.00052 25.4 6.1 28 23-50 6-37 (128)
147 cd07265 2_3_CTD_N N-terminal d 68.0 9.2 0.0002 26.1 3.8 29 24-52 4-33 (122)
148 PF03975 CheD: CheD chemotacti 66.6 12 0.00025 27.0 4.2 38 33-72 64-101 (114)
149 cd07266 HPCD_N_class_II N-term 65.6 11 0.00023 25.6 3.7 29 24-52 4-33 (121)
150 cd07253 Glo_EDI_BRP_like_2 Thi 65.4 12 0.00025 24.9 3.8 51 24-80 3-54 (125)
151 cd07267 THT_Oxygenase_N N-term 64.9 11 0.00023 25.7 3.6 29 24-52 3-31 (113)
152 PLN02875 4-hydroxyphenylpyruva 63.7 43 0.00092 29.6 7.9 59 21-79 89-151 (398)
153 cd07252 BphC1-RGP6_N_like N-te 61.5 49 0.0011 22.6 6.8 49 24-78 2-52 (120)
154 PRK13490 chemoreceptor glutami 60.9 16 0.00034 28.4 4.2 44 33-79 112-155 (162)
155 PRK13494 chemoreceptor glutami 60.7 16 0.00035 28.5 4.2 45 33-80 114-158 (163)
156 PRK13495 chemoreceptor glutami 59.6 17 0.00037 28.1 4.2 43 33-78 105-147 (159)
157 cd04906 ACT_ThrD-I_1 First of 59.0 17 0.00036 24.5 3.6 26 26-51 42-71 (85)
158 PRK13498 chemoreceptor glutami 58.9 18 0.00039 28.2 4.2 45 31-78 113-157 (167)
159 PRK13488 chemoreceptor glutami 58.1 19 0.00041 27.8 4.2 42 33-77 107-148 (157)
160 cd07251 Glo_EDI_BRP_like_10 Th 56.6 53 0.0011 21.7 5.8 46 28-80 2-48 (121)
161 PRK13497 chemoreceptor glutami 56.6 21 0.00046 28.4 4.3 39 33-73 112-150 (184)
162 PF12687 DUF3801: Protein of u 56.4 29 0.00063 27.7 5.1 51 22-72 31-81 (204)
163 KOG0638 4-hydroxyphenylpyruvat 55.6 10 0.00022 33.3 2.5 59 21-79 259-337 (381)
164 PRK13491 chemoreceptor glutami 55.2 22 0.00047 28.8 4.2 39 33-73 115-153 (199)
165 cd07239 BphC5-RK37_C_like C-te 54.9 23 0.0005 25.7 4.1 50 23-78 3-54 (144)
166 PRK13493 chemoreceptor glutami 54.6 22 0.00047 28.9 4.2 44 33-79 139-182 (213)
167 PF03698 UPF0180: Uncharacteri 53.2 44 0.00096 23.2 5.0 59 31-89 5-65 (80)
168 PRK13487 chemoreceptor glutami 53.0 25 0.00053 28.3 4.2 44 31-77 125-168 (201)
169 cd07244 FosA FosA, a Fosfomyci 52.9 33 0.00072 23.5 4.4 29 24-52 1-30 (121)
170 PRK09437 bcp thioredoxin-depen 52.5 54 0.0012 23.6 5.7 54 24-77 64-136 (154)
171 cd09013 BphC-JF8_N_like N-term 52.2 27 0.00059 23.7 3.9 48 24-78 6-57 (121)
172 cd04908 ACT_Bt0572_1 N-termina 52.2 30 0.00065 21.8 3.8 25 26-50 41-65 (66)
173 cd04883 ACT_AcuB C-terminal AC 51.7 31 0.00068 21.5 3.9 27 24-50 41-69 (72)
174 PRK03094 hypothetical protein; 51.5 62 0.0013 22.6 5.5 58 31-88 5-64 (80)
175 PRK13489 chemoreceptor glutami 51.2 27 0.00058 28.9 4.2 44 33-79 125-168 (233)
176 TIGR03079 CH4_NH3mon_ox_B meth 50.6 45 0.00098 29.7 5.7 58 20-86 339-397 (399)
177 PF06923 GutM: Glucitol operon 50.1 29 0.00062 25.2 3.8 56 30-85 21-76 (109)
178 cd08357 Glo_EDI_BRP_like_18 Th 49.9 32 0.00069 23.0 3.9 25 27-51 2-27 (125)
179 cd02966 TlpA_like_family TlpA- 49.2 68 0.0015 20.5 6.5 54 23-76 51-113 (116)
180 cd04927 ACT_ACR-like_2 Second 48.6 76 0.0017 20.9 6.8 38 35-72 14-53 (76)
181 cd08361 PpCmtC_N N-terminal do 48.5 89 0.0019 21.6 6.2 74 24-111 6-81 (124)
182 PRK03467 hypothetical protein; 48.4 78 0.0017 24.3 6.2 48 33-80 5-52 (144)
183 cd08362 BphC5-RrK37_N_like N-t 47.6 35 0.00077 22.8 3.8 28 24-51 3-31 (120)
184 cd03012 TlpA_like_DipZ_like Tl 47.5 71 0.0015 22.3 5.5 45 34-78 72-123 (126)
185 PRK06704 RNA polymerase factor 45.9 17 0.00037 29.4 2.3 44 29-77 183-226 (228)
186 cd04896 ACT_ACR-like_3 ACT dom 45.8 94 0.002 21.1 6.2 39 35-74 14-55 (75)
187 PRK10234 DNA-binding transcrip 43.7 40 0.00086 25.1 3.8 56 30-85 22-77 (118)
188 cd04886 ACT_ThrD-II-like C-ter 42.7 56 0.0012 19.7 3.9 24 27-50 46-72 (73)
189 PF00578 AhpC-TSA: AhpC/TSA fa 42.7 66 0.0014 21.7 4.7 51 24-74 59-122 (124)
190 cd03017 PRX_BCP Peroxiredoxin 42.5 83 0.0018 21.9 5.2 54 24-77 57-126 (140)
191 cd04885 ACT_ThrD-I Tandem C-te 42.2 38 0.00083 21.6 3.2 26 25-50 39-67 (68)
192 TIGR00318 cyaB adenylyl cyclas 42.2 43 0.00093 25.6 3.9 23 29-51 7-29 (174)
193 PF05301 Mec-17: Touch recepto 42.1 58 0.0013 24.4 4.5 60 60-126 27-87 (120)
194 PF15067 FAM124: FAM124 family 40.7 15 0.00032 30.6 1.2 41 24-74 193-233 (236)
195 cd04900 ACT_UUR-like_1 ACT dom 39.8 1E+02 0.0022 19.8 5.4 40 35-74 15-56 (73)
196 COG3185 4-hydroxyphenylpyruvat 39.3 63 0.0014 28.5 4.9 52 20-71 83-142 (363)
197 PF13721 SecD-TM1: SecD export 38.1 25 0.00054 25.1 1.9 37 31-70 44-80 (101)
198 PF11633 SUD-M: Single-strande 37.3 70 0.0015 24.7 4.3 48 26-76 36-83 (142)
199 PRK10382 alkyl hydroperoxide r 37.0 1.6E+02 0.0036 22.8 6.6 57 24-80 65-138 (187)
200 COG1871 CheD Chemotaxis protei 36.7 71 0.0015 25.2 4.4 39 33-73 114-152 (164)
201 PRK13599 putative peroxiredoxi 36.7 1.6E+02 0.0035 23.4 6.6 55 24-78 62-136 (215)
202 PF02630 SCO1-SenC: SCO1/SenC; 36.6 70 0.0015 24.3 4.3 56 21-79 113-173 (174)
203 cd04926 ACT_ACR_4 C-terminal 36.4 1.2E+02 0.0025 19.5 6.8 46 28-73 4-54 (72)
204 COG4747 ACT domain-containing 36.4 37 0.0008 26.0 2.7 25 27-51 111-135 (142)
205 cd04909 ACT_PDH-BS C-terminal 36.0 32 0.0007 21.5 2.0 24 26-49 43-69 (69)
206 cd01939 Ketohexokinase Ketohex 34.4 1.7E+02 0.0037 23.1 6.5 49 35-83 65-113 (290)
207 PF14907 NTP_transf_5: Unchara 33.2 1.7E+02 0.0037 22.6 6.2 49 26-80 95-145 (249)
208 PF00585 Thr_dehydrat_C: C-ter 33.2 40 0.00086 23.4 2.3 31 22-52 48-81 (91)
209 PF10922 DUF2745: Protein of u 33.2 97 0.0021 22.0 4.2 41 34-74 11-53 (85)
210 cd03008 TryX_like_RdCVF Trypar 32.5 1.6E+02 0.0036 22.1 5.7 52 24-75 65-127 (146)
211 PF09066 B2-adapt-app_C: Beta2 31.1 1.8E+02 0.004 20.2 6.0 46 33-80 36-85 (114)
212 TIGR00288 conserved hypothetic 30.1 1E+02 0.0022 24.0 4.3 32 22-53 103-136 (160)
213 cd09012 Glo_EDI_BRP_like_24 Th 30.0 1.8E+02 0.0039 19.7 6.6 49 26-79 2-50 (124)
214 cd03018 PRX_AhpE_like Peroxire 29.4 2E+02 0.0044 20.1 6.3 56 24-79 62-132 (149)
215 PF06185 YecM: YecM protein; 29.3 1.1E+02 0.0024 24.5 4.4 53 24-78 34-92 (185)
216 cd04914 ACT_AKi-DapG-BS_1 ACT 28.4 88 0.0019 20.1 3.2 25 27-51 39-65 (67)
217 PF13905 Thioredoxin_8: Thiore 28.3 1.6E+02 0.0034 19.1 4.5 52 22-73 33-95 (95)
218 cd08354 Glo_EDI_BRP_like_13 Th 28.1 1.8E+02 0.0039 19.1 7.3 49 26-80 2-51 (122)
219 cd07258 PpCmtC_C C-terminal do 28.1 92 0.002 22.6 3.6 37 26-68 1-38 (141)
220 PRK00522 tpx lipid hydroperoxi 27.3 2.6E+02 0.0057 20.8 7.6 58 24-81 76-151 (167)
221 COG0264 Tsf Translation elonga 26.8 75 0.0016 27.3 3.3 45 34-81 33-83 (296)
222 PRK15412 thiol:disulfide inter 26.0 2.7E+02 0.0059 21.0 6.0 52 26-77 99-159 (185)
223 PF10706 Aminoglyc_resit: Amin 25.9 1.9E+02 0.0042 23.0 5.2 28 25-52 44-71 (174)
224 cd04907 ACT_ThrD-I_2 Second of 25.7 1.1E+02 0.0023 20.7 3.4 28 25-52 42-71 (81)
225 PRK10629 EnvZ/OmpR regulon mod 25.5 50 0.0011 24.6 1.8 35 33-70 50-84 (127)
226 PF09633 DUF2023: Protein of u 25.4 1.6E+02 0.0034 21.6 4.3 35 32-69 24-58 (101)
227 PF11823 DUF3343: Protein of u 25.1 90 0.002 20.3 2.8 26 26-51 41-68 (73)
228 PF04577 DUF563: Protein of un 25.1 1.8E+02 0.004 21.5 4.9 48 32-79 118-182 (206)
229 PRK03381 PII uridylyl-transfer 25.0 2.8E+02 0.006 26.4 7.0 51 25-75 707-762 (774)
230 PRK13577 diaminopimelate epime 24.6 2.1E+02 0.0044 23.4 5.4 57 21-81 154-210 (281)
231 COG0450 AhpC Peroxiredoxin [Po 24.0 2.2E+02 0.0048 23.0 5.3 24 57-80 120-143 (194)
232 cd07268 Glo_EDI_BRP_like_4 Thi 23.9 1.5E+02 0.0033 23.0 4.2 49 25-78 2-59 (149)
233 PRK14581 hmsF outer membrane N 23.8 97 0.0021 29.4 3.7 17 34-50 335-351 (672)
234 PRK15000 peroxidase; Provision 23.6 3.5E+02 0.0077 21.0 7.5 19 60-78 124-142 (200)
235 cd02969 PRX_like1 Peroxiredoxi 23.1 1.7E+02 0.0036 21.5 4.3 53 24-76 58-125 (171)
236 COG5397 Uncharacterized conser 23.0 66 0.0014 27.9 2.3 50 27-78 160-210 (349)
237 KOG2792 Putative cytochrome C 22.2 1.7E+02 0.0038 24.9 4.5 44 35-78 212-259 (280)
238 PF14044 NETI: NETI protein 22.2 2.3E+02 0.005 18.7 4.2 41 30-77 2-45 (57)
239 COG4009 Uncharacterized protei 22.0 1.3E+02 0.0027 21.4 3.1 29 24-52 49-79 (88)
240 cd04925 ACT_ACR_2 ACT domain-c 21.6 2.4E+02 0.0051 18.2 4.8 38 35-72 14-53 (74)
241 PRK13190 putative peroxiredoxi 21.5 3.9E+02 0.0084 20.7 7.5 56 24-79 61-135 (202)
242 TIGR00116 tsf translation elon 21.4 99 0.0021 26.2 3.0 48 34-81 32-80 (290)
243 COG1225 Bcp Peroxiredoxin [Pos 20.9 4E+02 0.0087 20.6 6.9 54 24-77 64-136 (157)
244 PF13756 Stimulus_sens_1: Stim 20.8 83 0.0018 22.6 2.1 14 62-75 19-32 (112)
245 PF03432 Relaxase: Relaxase/Mo 20.5 2.1E+02 0.0046 22.0 4.6 20 31-50 183-202 (242)
246 PF08915 tRNA-Thr_ED: Archaea- 20.5 2.4E+02 0.0052 21.6 4.7 19 35-53 97-115 (138)
No 1
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.42 E-value=1.8e-12 Score=93.41 Aligned_cols=57 Identities=16% Similarity=0.267 Sum_probs=48.4
Q ss_pred CCCCceEEEEeCCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEee
Q 032603 22 NPKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNC 79 (137)
Q Consensus 22 np~~~HIAF~VedId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~ 79 (137)
+.+..|+||.|+|+++++++|+++|+++...+... ..+.+.+||+||||++|||++.
T Consensus 85 ~~g~~hia~~v~d~d~~~~~l~~~G~~~~~~~~~~-~~~~r~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 85 ALGLRRVMFAVDDIDARVARLRKHGAELVGEVVQY-ENSYRLCYIRGPEGILIELAEQ 141 (142)
T ss_pred CCCceEEEEEeCCHHHHHHHHHHCCCceeCCceec-CCCeEEEEEECCCCCEEEeeec
Confidence 44688999999999999999999999998755332 2346899999999999999874
No 2
>PRK11478 putative lyase; Provisional
Probab=99.36 E-value=8.2e-12 Score=88.01 Aligned_cols=55 Identities=22% Similarity=0.370 Sum_probs=45.4
Q ss_pred CCCceEEEEeCCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEe
Q 032603 23 PKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 78 (137)
Q Consensus 23 p~~~HIAF~VedId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e 78 (137)
.+..|+||.|+|+++++++|+++|+++...... ...|.+.+||+|||||.|||++
T Consensus 74 ~g~~hi~f~v~d~~~~~~~l~~~G~~~~~~~~~-~~~g~~~~~~~DPdG~~iEl~~ 128 (129)
T PRK11478 74 CGLRHLAFSVDDIDAAVAHLESHNVKCEAIRVD-PYTQKRFTFFNDPDGLPLELYE 128 (129)
T ss_pred CceeEEEEEeCCHHHHHHHHHHcCCeeeccccC-CCCCCEEEEEECCCCCEEEEEe
Confidence 467899999999999999999999998754322 1123589999999999999986
No 3
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.28 E-value=1.6e-11 Score=95.60 Aligned_cols=58 Identities=33% Similarity=0.493 Sum_probs=50.3
Q ss_pred CCCC-CCceEEEEeCCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEee
Q 032603 20 NINP-KDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNC 79 (137)
Q Consensus 20 ~inp-~~~HIAF~VedId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~ 79 (137)
+..| +++||||.|+|+++++++|+++||++...+ .+|.+ ...+|++|||||||||...
T Consensus 110 N~~prGfgHIci~V~di~sac~~lkekGV~f~Kk~-~dGk~-K~iaF~~dpDgywiei~~~ 168 (170)
T KOG2944|consen 110 NKEPRGFGHICIEVDDINSACERLKEKGVRFKKKL-KDGKM-KPIAFLHDPDGYWIEIELE 168 (170)
T ss_pred CCCCCccceEEEEeCCHHHHHHHHHHhCceeeecC-CCccc-cceeEEECCCCCeEEEeec
Confidence 5566 899999999999999999999999988775 44554 4799999999999999865
No 4
>PRK10291 glyoxalase I; Provisional
Probab=99.27 E-value=2e-11 Score=87.16 Aligned_cols=59 Identities=20% Similarity=0.236 Sum_probs=47.5
Q ss_pred CCCceEEEEeCCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEeecC
Q 032603 23 PKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDV 81 (137)
Q Consensus 23 p~~~HIAF~VedId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~~~ 81 (137)
++..|+||.|+|+++++++|+++|+++...+.+..+.+.+.+||+|||||+|||++..+
T Consensus 64 ~~~~hlaf~V~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~~ 122 (129)
T PRK10291 64 TAYGHIALSVDNAAEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKD 122 (129)
T ss_pred CCeeEEEEEeCCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEccc
Confidence 46889999999999999999999999986542221112467899999999999998764
No 5
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.24 E-value=9e-11 Score=80.82 Aligned_cols=59 Identities=22% Similarity=0.439 Sum_probs=47.2
Q ss_pred CCCCCceEEEEeCC-HHHHHHHHHHCCcEEeeeccccCC--ceEEEEEEEcCCCCEEEEEee
Q 032603 21 INPKDNHISFQCEN-MAIVERRLKEMKIDYVKSRVEEGG--INVDQLFFHDPDGSMIEICNC 79 (137)
Q Consensus 21 inp~~~HIAF~Ved-Id~v~~rLke~GI~~~~~~~~~~g--~g~r~vFf~DPDGn~IEI~e~ 79 (137)
..++..|++|.+++ +++++++|+++|+++...+....+ .+.+.+||+|||||+|||+++
T Consensus 64 ~~~~~~hi~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~ 125 (125)
T cd07253 64 PGPGSDDLCLITEPPIDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSNY 125 (125)
T ss_pred CCCCCceEEEEecccHHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEEeeeC
Confidence 34578899999975 999999999999998865532111 124799999999999999875
No 6
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.23 E-value=3.6e-11 Score=84.54 Aligned_cols=55 Identities=24% Similarity=0.341 Sum_probs=46.0
Q ss_pred CCceEEEEeCCHHHHHHHHHHCCc-EEeeeccccCCceEEEEEEEcCCCCEEEEEee
Q 032603 24 KDNHISFQCENMAIVERRLKEMKI-DYVKSRVEEGGINVDQLFFHDPDGSMIEICNC 79 (137)
Q Consensus 24 ~~~HIAF~VedId~v~~rLke~GI-~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~ 79 (137)
+..|++|.|+|+|+++++|+++|+ ++...+.. ..+|.+.+||+|||||+|||.+.
T Consensus 64 ~~~~l~~~v~dvd~~~~~l~~~g~~~~~~~~~~-~~~g~r~~~~~DPdGn~iei~~~ 119 (120)
T cd09011 64 NNFELYFEEEDFDAFLDKLKRYDNIEYVHPIKE-HPWGQRVVRFYDPDKHIIEVGES 119 (120)
T ss_pred CceEEEEEehhhHHHHHHHHhcCCcEEecCccc-CCCccEEEEEECCCCCEEEEecc
Confidence 457999999999999999999985 67766543 33557999999999999999864
No 7
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.22 E-value=7.4e-11 Score=81.67 Aligned_cols=54 Identities=20% Similarity=0.250 Sum_probs=43.6
Q ss_pred CCCceEEEEeC---CHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEE
Q 032603 23 PKDNHISFQCE---NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEIC 77 (137)
Q Consensus 23 p~~~HIAF~Ve---dId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~ 77 (137)
++..|+||.|+ ++++++++|+++|+++...+.. .+.|.+.+||+|||||+|||.
T Consensus 69 ~g~~hi~f~v~~~~~v~~~~~~l~~~g~~~~~~~~~-~~~g~~~~~~~DPdG~~iE~~ 125 (125)
T cd07241 69 TGWAHLAFSVGSKEAVDELTERLRADGYLIIGEPRT-TGDGYYESVILDPEGNRIEIT 125 (125)
T ss_pred CceEEEEEECCCHHHHHHHHHHHHHCCCEEEeCcee-cCCCeEEEEEECCCCCEEEeC
Confidence 46789999996 4899999999999999875532 223357789999999999983
No 8
>PLN02367 lactoylglutathione lyase
Probab=99.20 E-value=5.8e-11 Score=96.94 Aligned_cols=59 Identities=25% Similarity=0.433 Sum_probs=50.3
Q ss_pred CCCceEEEEeCCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEeecCCC
Q 032603 23 PKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVLP 83 (137)
Q Consensus 23 p~~~HIAF~VedId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~~~~p 83 (137)
.+++||||.|+|+++++++|+++|+++...+.. +. +.+.+||+|||||+|||+++..+.
T Consensus 168 ~G~~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~-g~-~~riaFIkDPDGn~IEL~e~~~~~ 226 (233)
T PLN02367 168 RGFGHIGITVDDVYKACERFEELGVEFVKKPND-GK-MKGIAFIKDPDGYWIEIFDLKTIG 226 (233)
T ss_pred CCceEEEEEcCCHHHHHHHHHHCCCEEEeCCcc-CC-ceEEEEEECCCCCEEEEEeccccc
Confidence 479999999999999999999999999976543 22 257899999999999999987643
No 9
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.20 E-value=1.7e-10 Score=79.45 Aligned_cols=56 Identities=25% Similarity=0.371 Sum_probs=45.9
Q ss_pred CCCCceEEEEeCCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEe
Q 032603 22 NPKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 78 (137)
Q Consensus 22 np~~~HIAF~VedId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e 78 (137)
..+..|++|.|+|+++++++|+++|+++...+.. ...+.+.+||.||+||+|||.+
T Consensus 70 ~~g~~h~~~~v~d~~~~~~~l~~~G~~~~~~~~~-~~~~~~~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 70 ACGLRHLAFSVEDIEAAVKHLKAKGVEVEPIRVD-EFTGKRFTFFYDPDGLPLELYE 125 (125)
T ss_pred CCCceEEEEEeCCHHHHHHHHHHcCCcccccccc-CCCceEEEEEECCCCCEEEecC
Confidence 3467899999999999999999999998765422 1223578999999999999974
No 10
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.20 E-value=1.3e-10 Score=87.75 Aligned_cols=60 Identities=15% Similarity=0.148 Sum_probs=47.0
Q ss_pred CCCCceEEEEeCCHHHHHHHHHHCCcEEeeec-cc--cCCceEEEEEEEcCCCCEEEEEeecC
Q 032603 22 NPKDNHISFQCENMAIVERRLKEMKIDYVKSR-VE--EGGINVDQLFFHDPDGSMIEICNCDV 81 (137)
Q Consensus 22 np~~~HIAF~VedId~v~~rLke~GI~~~~~~-~~--~~g~g~r~vFf~DPDGn~IEI~e~~~ 81 (137)
.++..|+||.|+|+++++++|+++|+++.... .. .++.+.+.+||+|||||+|||++...
T Consensus 91 ~~g~~Hla~~v~dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~~ 153 (162)
T TIGR03645 91 KTGVFHFCVQDPDVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHSY 153 (162)
T ss_pred cccceEEEEEcCCHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcCh
Confidence 35789999999999999999999998765432 10 11112589999999999999998653
No 11
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.19 E-value=8.9e-11 Score=85.20 Aligned_cols=59 Identities=12% Similarity=0.058 Sum_probs=50.7
Q ss_pred CCCCceEEEEeCCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEeecC
Q 032603 22 NPKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDV 81 (137)
Q Consensus 22 np~~~HIAF~VedId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~~~ 81 (137)
.++..|+||.|+|+++++++|+++|+++...+.. ...+.+.+||+||||++|||++...
T Consensus 67 ~~g~~hia~~V~Dvda~~~~l~~~G~~v~~~p~~-~~~~~~~~~i~dp~G~~ie~~~~~~ 125 (136)
T cd08342 67 GDGVCDVAFRVDDAAAAYERAVARGAKPVQEPVE-EPGELKIAAIKGYGDSLHTLVDRKG 125 (136)
T ss_pred CCceEEEEEEeCCHHHHHHHHHHcCCeEccCcee-cCCeEEEEEEeccCCcEEEEEecCC
Confidence 4567899999999999999999999999987654 2245799999999999999998654
No 12
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.19 E-value=1.1e-10 Score=78.31 Aligned_cols=68 Identities=38% Similarity=0.708 Sum_probs=51.1
Q ss_pred EEEeecCCCCCCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEE
Q 032603 3 IHLLKSEEPDNLPKAGKNINPKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEI 76 (137)
Q Consensus 3 IHLl~~~~~~~~~~~~~~inp~~~HIAF~VedId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI 76 (137)
+||++....... +....+..|++|.|+|+++++++|+++|+++...+.. ..+.+.+||.|||||+|||
T Consensus 47 i~l~~~~~~~~~----~~~~~~~~~~~~~v~d~~~~~~~l~~~g~~~~~~~~~--~~~~~~~~~~DP~G~~iE~ 114 (114)
T cd07245 47 LHLIEEDPPDAL----PEGPGRDDHIAFRVDDLDAFRARLKAAGVPYTESDVP--GDGVRQLFVRDPDGNRIEL 114 (114)
T ss_pred EEEEecCCCccc----cCCCcccceEEEEeCCHHHHHHHHHHcCCCcccccCC--CCCccEEEEECCCCCEEeC
Confidence 666654433211 1234467899999999999999999999999876533 2335889999999999996
No 13
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.19 E-value=1.7e-10 Score=80.26 Aligned_cols=54 Identities=19% Similarity=0.335 Sum_probs=45.8
Q ss_pred CCceEEEEeCCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEe
Q 032603 24 KDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 78 (137)
Q Consensus 24 ~~~HIAF~VedId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e 78 (137)
...|++|.|+|+++++++|+++|+++...+.. .++|.+.+||+|||||.|||++
T Consensus 66 ~~~~~~~~v~did~~~~~l~~~G~~~~~~~~~-~~~g~~~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 66 QGLILNFEVDDVDAEYERLKAEGLPIVLPLRD-EPWGQRHFIVRDPNGVLIDIVQ 119 (119)
T ss_pred ceEEEEEEECCHHHHHHHHHhcCCCeeecccc-CCCcceEEEEECCCCCEEEEEC
Confidence 34599999999999999999999998866533 2345799999999999999975
No 14
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.18 E-value=2.4e-10 Score=79.06 Aligned_cols=52 Identities=29% Similarity=0.464 Sum_probs=45.1
Q ss_pred CCceEEEEeCCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEE
Q 032603 24 KDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEIC 77 (137)
Q Consensus 24 ~~~HIAF~VedId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~ 77 (137)
+..|++|.|+|+++++++|+++|+++...+...++ .+.+||+|||||+|||+
T Consensus 70 ~~~~i~~~v~did~~~~~l~~~G~~~~~~~~~~~~--~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 70 GFGHLAFAVDDVYAACERLEEMGVEVTKPPGDGGM--KGIAFIKDPDGYWIELI 121 (121)
T ss_pred CeEEEEEEeCCHHHHHHHHHHCCCEEeeCCccCCC--ceEEEEECCCCCEEEeC
Confidence 67899999999999999999999999987644322 47899999999999984
No 15
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.18 E-value=1.1e-10 Score=91.68 Aligned_cols=62 Identities=21% Similarity=0.341 Sum_probs=52.2
Q ss_pred CCCceEEEEeCCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEeecCCCCcc
Q 032603 23 PKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVLPVVP 86 (137)
Q Consensus 23 p~~~HIAF~VedId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~~~~p~~p 86 (137)
+++.|+||.|+|+++++++|+++|+++...+... .+.+.+||+|||||+|||++..++.-|-
T Consensus 120 ~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~~--~~~~~~fi~DPdG~~IEl~e~~~~~~~~ 181 (185)
T PLN03042 120 RGFGHIGITVDDVYKACERFEKLGVEFVKKPDDG--KMKGLAFIKDPDGYWIEIFDLKRIGGIT 181 (185)
T ss_pred CCccEEEEEcCCHHHHHHHHHHCCCeEEeCCccC--CceeEEEEECCCCCEEEEEECCCchhhc
Confidence 4789999999999999999999999998655322 2257789999999999999999977553
No 16
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.17 E-value=6.6e-11 Score=82.66 Aligned_cols=57 Identities=18% Similarity=0.289 Sum_probs=45.3
Q ss_pred CCCCceEEEEeCCHHHHHHHHHHCCcEEeeeccccCCceEEEEEE--EcCCCCEEEEEe
Q 032603 22 NPKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFF--HDPDGSMIEICN 78 (137)
Q Consensus 22 np~~~HIAF~VedId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf--~DPDGn~IEI~e 78 (137)
..+..|+||.|+|+++++++|+++|+++.......+.+|.+.+|+ +||||++|||.+
T Consensus 70 ~~g~~~i~~~v~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 70 GGGIHHIAIEVDDIEAALETLKEKGVRLIDEEPRIGAGGKPVAFLHPKSTGGVLIELEE 128 (128)
T ss_pred CCceEEEEEEcCCHHHHHHHHHHCCCcccCCCCccCCCCCEEEEecccccCcEEEEecC
Confidence 346779999999999999999999999986421222234577888 799999999974
No 17
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.15 E-value=3.3e-10 Score=77.17 Aligned_cols=55 Identities=15% Similarity=0.276 Sum_probs=46.5
Q ss_pred CCCCceEEEEeCCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEe
Q 032603 22 NPKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 78 (137)
Q Consensus 22 np~~~HIAF~VedId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e 78 (137)
..+..|++|.|+|+++++++|+++|+++...+.... . .+.+||+|||||.|||++
T Consensus 65 ~~~~~~~~~~v~di~~~~~~l~~~g~~~~~~~~~~~-~-~~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 65 PGGTPGLVLATDDIDATYEELKARGVEFSEEPREMP-Y-GTVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred CCCceEEEEEehHHHHHHHHHHhCCCEEeeccccCC-C-ceEEEEECCCCCEEEEeC
Confidence 346779999999999999999999999997663222 2 489999999999999974
No 18
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.15 E-value=1.6e-10 Score=78.71 Aligned_cols=55 Identities=29% Similarity=0.556 Sum_probs=45.4
Q ss_pred CCCCceEEEEeCCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEE
Q 032603 22 NPKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEIC 77 (137)
Q Consensus 22 np~~~HIAF~VedId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~ 77 (137)
..+..|++|.|+|+++++++|+++|+++...+... .+|.+.+||.|||||+|||+
T Consensus 54 ~~~~~~~~~~v~dv~~~~~~l~~~G~~~~~~~~~~-~~g~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 54 PGGGFHLCFEVEDVDALYERLKELGAEIVTEPRDD-PWGQRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp SSSEEEEEEEESHHHHHHHHHHHTTSEEEEEEEEE-TTSEEEEEEE-TTS-EEEEE
T ss_pred CCceeEEEEEEcCHHHHHHHHHHCCCeEeeCCEEc-CCCeEEEEEECCCCCEEEeC
Confidence 44678999999999999999999999988776443 23479999999999999996
No 19
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.13 E-value=3.7e-10 Score=78.09 Aligned_cols=56 Identities=18% Similarity=0.277 Sum_probs=47.1
Q ss_pred CCCceEEEEeCCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEee
Q 032603 23 PKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNC 79 (137)
Q Consensus 23 p~~~HIAF~VedId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~ 79 (137)
+...|++|.|+|+++++++|+++|+++...+... .+|.+.+||.|||||+|||++.
T Consensus 56 ~~~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~-~~g~~~~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 56 TVVPDLSIEVDDVDAALARAVAAGFAIVYGPTDE-PWGVRRFFVRDPFGKLVNILTH 111 (112)
T ss_pred CCCCEEEEEeCCHHHHHHHHHhcCCeEecCCccC-CCceEEEEEECCCCCEEEEEEc
Confidence 3457999999999999999999999998765432 3446899999999999999863
No 20
>PRK06724 hypothetical protein; Provisional
Probab=99.11 E-value=2.6e-10 Score=83.58 Aligned_cols=58 Identities=24% Similarity=0.316 Sum_probs=47.5
Q ss_pred CCCceEEEEe---CCHHHHHHHHHHCCcEEeeecccc--CCceEEEEEEEcCCCCEEEEEeec
Q 032603 23 PKDNHISFQC---ENMAIVERRLKEMKIDYVKSRVEE--GGINVDQLFFHDPDGSMIEICNCD 80 (137)
Q Consensus 23 p~~~HIAF~V---edId~v~~rLke~GI~~~~~~~~~--~g~g~r~vFf~DPDGn~IEI~e~~ 80 (137)
++..|+||.| +++|+++++|+++|+++...+... .+.|.+.+||+|||||+||+...+
T Consensus 62 ~g~~h~af~v~~~~dvd~~~~~l~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~~ 124 (128)
T PRK06724 62 LGPRHICYQAINRKVVDEVAEFLSSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYTP 124 (128)
T ss_pred CCceeEEEecCChHHHHHHHHHHHHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeCC
Confidence 4678999998 689999999999999997665332 234568999999999999997653
No 21
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.11 E-value=8.8e-10 Score=77.27 Aligned_cols=56 Identities=7% Similarity=0.183 Sum_probs=47.5
Q ss_pred CCCceEEEEeCCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEee
Q 032603 23 PKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNC 79 (137)
Q Consensus 23 p~~~HIAF~VedId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~ 79 (137)
+...|++|.|+|+++++++|+++|+++...+... .+|.+.++|+|||||+|+|.+|
T Consensus 67 ~~~~~~~~~v~d~d~~~~~l~~~G~~v~~~~~~~-~~g~~~~~~~DPdG~~~~l~~~ 122 (122)
T cd08355 67 AGTQGVYVVVDDVDAHYERARAAGAEILREPTDT-PYGSREFTARDPEGNLWTFGTY 122 (122)
T ss_pred CceEEEEEEECCHHHHHHHHHHCCCEEeeCcccc-CCCcEEEEEECCCCCEEEEecC
Confidence 4567999999999999999999999999776432 2446889999999999999864
No 22
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.11 E-value=5.6e-10 Score=76.05 Aligned_cols=55 Identities=16% Similarity=0.303 Sum_probs=44.6
Q ss_pred CCCceEEEEeCCHHHHHHHHHHCCcE-EeeeccccCCceEEEEEEEcCCCCEEEEEe
Q 032603 23 PKDNHISFQCENMAIVERRLKEMKID-YVKSRVEEGGINVDQLFFHDPDGSMIEICN 78 (137)
Q Consensus 23 p~~~HIAF~VedId~v~~rLke~GI~-~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e 78 (137)
++..|++|.++|+++++++|+++|++ +...+.. .+++.+.+||+||||+.||+++
T Consensus 57 ~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~-~~~g~~~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 57 GRGGSVYIEVEDVDALYAELKAKGADLIVYPPED-QPWGMREFAVRDPDGNLLRFGE 112 (112)
T ss_pred CCcEEEEEEeCCHHHHHHHHHHcCCcceecCccC-CCcccEEEEEECCCCCEEEecC
Confidence 35569999999999999999999999 4444322 2344689999999999999975
No 23
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.11 E-value=6e-10 Score=78.42 Aligned_cols=55 Identities=11% Similarity=0.213 Sum_probs=43.2
Q ss_pred CceEEEEeCCHHHHHHHHHHCCcEEee------eccccCCceEEEEEEEcCCCCEEEEEee
Q 032603 25 DNHISFQCENMAIVERRLKEMKIDYVK------SRVEEGGINVDQLFFHDPDGSMIEICNC 79 (137)
Q Consensus 25 ~~HIAF~VedId~v~~rLke~GI~~~~------~~~~~~g~g~r~vFf~DPDGn~IEI~e~ 79 (137)
..|++|.|+|+++++++|+++|+++.. .......+|.+.+||+|||||+|||.+.
T Consensus 59 ~~~~~~~v~dvd~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 59 PFGCCLRLPDVAALHAEFRAAGLPETGSGIPRITPPEDQPWGMREFALVDPDGNLLRFGQP 119 (120)
T ss_pred cceEEEEeCCHHHHHHHHHHhCccccccCCCcccCCcCCCCceeEEEEECCCCCEEEeecC
Confidence 358999999999999999999998641 1111112457999999999999999863
No 24
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.09 E-value=5.8e-10 Score=76.95 Aligned_cols=55 Identities=15% Similarity=0.266 Sum_probs=46.5
Q ss_pred CCCceEEEEeCCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEe
Q 032603 23 PKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 78 (137)
Q Consensus 23 p~~~HIAF~VedId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e 78 (137)
+...|++|.++|+++++++|+++|+++...+...++ +.+.+||+|||||+||+++
T Consensus 60 ~~~~~~~f~v~di~~~~~~l~~~g~~~~~~~~~~~~-~~~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 60 PPGWLVYFAVDDVDAAAARVEAAGGKVLVPPTDIPG-VGRFAVFADPEGAVFGLWQ 114 (114)
T ss_pred CCeEEEEEEeCCHHHHHHHHHHCCCEEEeCCcccCC-cEEEEEEECCCCCEEEeEC
Confidence 456799999999999999999999999877643332 2589999999999999974
No 25
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.07 E-value=5.2e-10 Score=82.42 Aligned_cols=58 Identities=21% Similarity=0.252 Sum_probs=47.4
Q ss_pred CCCceEEEEeCCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEeec
Q 032603 23 PKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCD 80 (137)
Q Consensus 23 p~~~HIAF~VedId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~~ 80 (137)
.+..|++|.|+|+++++++|+++|+++...+.+..+.+.+.+||+|||||+|||++..
T Consensus 85 ~g~~hi~f~v~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~ 142 (150)
T TIGR00068 85 NGFGHIAIGVDDVYKACERVRALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRK 142 (150)
T ss_pred CceeEEEEecCCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECC
Confidence 3678999999999999999999999988655222222257889999999999999865
No 26
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.07 E-value=6.2e-10 Score=78.21 Aligned_cols=56 Identities=16% Similarity=0.278 Sum_probs=44.9
Q ss_pred CCCceEEEEeC---CHHHHHHHHHHCCcEEeeeccc-cCCceEEEEEEEcCCCCEEEEEee
Q 032603 23 PKDNHISFQCE---NMAIVERRLKEMKIDYVKSRVE-EGGINVDQLFFHDPDGSMIEICNC 79 (137)
Q Consensus 23 p~~~HIAF~Ve---dId~v~~rLke~GI~~~~~~~~-~~g~g~r~vFf~DPDGn~IEI~e~ 79 (137)
++.+|+||.|+ ++++++++|+++|+++...+.. ..+. .+.+||+|||||+||+...
T Consensus 60 ~~~~hiaf~v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~-~~~~~~~DPdG~~iE~~~~ 119 (122)
T cd07265 60 AGLDFMGFKVLDDADLEKLEARLQAYGVAVERIPAGELPGV-GRRVRFQLPSGHTMELYAD 119 (122)
T ss_pred CCeeEEEEEeCCHHHHHHHHHHHHHCCCcEEEcccCCCCCC-ceEEEEECCCCCEEEEEEe
Confidence 46789999997 7999999999999998764321 1222 3789999999999999854
No 27
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.07 E-value=8.2e-10 Score=76.79 Aligned_cols=56 Identities=16% Similarity=0.337 Sum_probs=43.4
Q ss_pred CCceEEE--EeCCHHHHHHHHHHCCcEEeeecccc---CCceEEEEEEEcCCCCEEEEEee
Q 032603 24 KDNHISF--QCENMAIVERRLKEMKIDYVKSRVEE---GGINVDQLFFHDPDGSMIEICNC 79 (137)
Q Consensus 24 ~~~HIAF--~VedId~v~~rLke~GI~~~~~~~~~---~g~g~r~vFf~DPDGn~IEI~e~ 79 (137)
+..|++| .++|+++++++|+++|+++...+... ...+.+.+||+|||||+|||..+
T Consensus 65 ~~~h~~~~~~~~dv~~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~~ 125 (125)
T cd08357 65 PVPHFGLILSEEEFDALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKAF 125 (125)
T ss_pred CCceEEEEEeHHHHHHHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEeeC
Confidence 4568765 56799999999999999998655321 11225899999999999999764
No 28
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.07 E-value=5.2e-10 Score=80.84 Aligned_cols=55 Identities=22% Similarity=0.381 Sum_probs=44.6
Q ss_pred CCceEEEEeC--CHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEee
Q 032603 24 KDNHISFQCE--NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNC 79 (137)
Q Consensus 24 ~~~HIAF~Ve--dId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~ 79 (137)
+.+|+||.|+ ++++++++|++.|+++........+. .+++||+|||||.|||...
T Consensus 66 ~~~Hiaf~v~~~~ld~~~~~l~~~gv~~~~~~~~~~~~-g~~~yf~DPdG~~iEl~~~ 122 (131)
T cd08364 66 TYNHIAFKISDSDVDEYTERIKALGVEMKPPRPRVQGE-GRSIYFYDFDNHLFELHTG 122 (131)
T ss_pred CceEEEEEcCHHHHHHHHHHHHHCCCEEecCCccccCC-ceEEEEECCCCCEEEEecC
Confidence 5789999998 79999999999999987543212222 4899999999999999853
No 29
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.07 E-value=1.8e-09 Score=75.84 Aligned_cols=57 Identities=30% Similarity=0.503 Sum_probs=46.1
Q ss_pred CCCCceEEEEeC---CHHHHHHHHHHCCcEEeeecccc--CCceEEEEEEEcCCCCEEEEEe
Q 032603 22 NPKDNHISFQCE---NMAIVERRLKEMKIDYVKSRVEE--GGINVDQLFFHDPDGSMIEICN 78 (137)
Q Consensus 22 np~~~HIAF~Ve---dId~v~~rLke~GI~~~~~~~~~--~g~g~r~vFf~DPDGn~IEI~e 78 (137)
.++..|+||.|+ |+++++++|+++|+++...+... ...+.+.+||+|||||+|||+.
T Consensus 66 ~~g~~hia~~v~~~~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~ 127 (128)
T cd07242 66 NPGLHHLAFRAPSREAVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVA 127 (128)
T ss_pred CcCeeEEEEEcCCHHHHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEe
Confidence 446789999997 58999999999999999865421 1123689999999999999975
No 30
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.07 E-value=1.1e-09 Score=76.40 Aligned_cols=56 Identities=23% Similarity=0.306 Sum_probs=46.5
Q ss_pred CCCceEEEEeCCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEee
Q 032603 23 PKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNC 79 (137)
Q Consensus 23 p~~~HIAF~VedId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~ 79 (137)
+..-|++|.|+|+++++++++++|+++...+.. ..+|.+.+||+|||||.+||.++
T Consensus 70 ~~~~~~~~~v~di~~~~~~l~~~G~~~~~~~~~-~~~g~~~~~~~DPdG~~~~~~~~ 125 (125)
T cd07264 70 PAGFEIAFVTDDVAAAFARAVEAGAVLVSEPKE-KPWGQTVAYVRDINGFLIELCSP 125 (125)
T ss_pred CCcEEEEEEcCCHHHHHHHHHHcCCEeccCCcc-CCCCcEEEEEECCCCCEEEEecC
Confidence 345699999999999999999999999876532 23456889999999999999863
No 31
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.06 E-value=1.6e-09 Score=74.79 Aligned_cols=55 Identities=13% Similarity=-0.048 Sum_probs=46.9
Q ss_pred CCCceEEEEeCCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEe
Q 032603 23 PKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 78 (137)
Q Consensus 23 p~~~HIAF~VedId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e 78 (137)
+...|++|.|+|++++++++.++|+++...+.. ..+|.+.++|+|||||+|||++
T Consensus 67 ~~~~~~~~~v~d~~~~~~~l~~~G~~~~~~~~~-~~~g~~~~~~~DP~G~~~~l~~ 121 (122)
T cd07246 67 GTPVSLHLYVEDVDATFARAVAAGATSVMPPAD-QFWGDRYGGVRDPFGHRWWIAT 121 (122)
T ss_pred CceEEEEEEeCCHHHHHHHHHHCCCeEecCccc-ccccceEEEEECCCCCEEEEec
Confidence 346799999999999999999999999877642 2345789999999999999975
No 32
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.06 E-value=7.4e-10 Score=78.22 Aligned_cols=53 Identities=15% Similarity=0.135 Sum_probs=43.8
Q ss_pred CCceEEEEeC---CHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEe
Q 032603 24 KDNHISFQCE---NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 78 (137)
Q Consensus 24 ~~~HIAF~Ve---dId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e 78 (137)
+..|++|.|+ ++++++++++++|+++..++...++ .+.+||+|||||.|||+.
T Consensus 68 ~~~~l~f~v~~~~~vd~~~~~l~~~G~~i~~~p~~~~~--~~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 68 TEVLISLSADSREEVDELVEKALAAGGKEFREPQDHGF--MYGRSFADLDGHLWEVLW 123 (124)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHHCCCcccCCcccCCc--eEEEEEECCCCCEEEEEE
Confidence 4569999998 5889999999999999876543332 478999999999999973
No 33
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.05 E-value=7.9e-10 Score=78.32 Aligned_cols=56 Identities=25% Similarity=0.417 Sum_probs=45.7
Q ss_pred CCceEEEEeC--CHHHHHHHHHHCCcEEeeecccc------CCceEEEEEEEcCCCCEEEEEee
Q 032603 24 KDNHISFQCE--NMAIVERRLKEMKIDYVKSRVEE------GGINVDQLFFHDPDGSMIEICNC 79 (137)
Q Consensus 24 ~~~HIAF~Ve--dId~v~~rLke~GI~~~~~~~~~------~g~g~r~vFf~DPDGn~IEI~e~ 79 (137)
+..|++|.++ |+++++++|+++|+++...+... ...+.+.+||+|||||.|||++.
T Consensus 58 ~~~h~a~~v~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 121 (123)
T cd08351 58 PPQHYAFLVSEEEFDRIFARIRERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITR 121 (123)
T ss_pred CcceEEEEeCHHHHHHHHHHHHHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEec
Confidence 4689999997 69999999999999987654221 12346999999999999999976
No 34
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.05 E-value=7.5e-10 Score=81.86 Aligned_cols=58 Identities=19% Similarity=0.213 Sum_probs=44.8
Q ss_pred CCCCceEEEEeCCHHH---HHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEee
Q 032603 22 NPKDNHISFQCENMAI---VERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNC 79 (137)
Q Consensus 22 np~~~HIAF~VedId~---v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~ 79 (137)
.++.+|+||.|+|+++ +.++|+++|+++...+...+-.+.+++||+|||||+|||...
T Consensus 65 ~~~~~Hiaf~v~d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~~ 125 (143)
T cd07243 65 DGKLHHFSFFLESWEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFAG 125 (143)
T ss_pred CCCceEEEEEcCCHHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEecC
Confidence 3578899999999887 568999999998765432110124789999999999999763
No 35
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.04 E-value=1.3e-09 Score=82.25 Aligned_cols=56 Identities=20% Similarity=0.409 Sum_probs=45.6
Q ss_pred CCCCceEEEEeCC---HHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEeec
Q 032603 22 NPKDNHISFQCEN---MAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCD 80 (137)
Q Consensus 22 np~~~HIAF~Ved---Id~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~~ 80 (137)
..+.+|+||.|+| +++++++|+++|+++.. +... +. .+++||+|||||+|||+.+.
T Consensus 63 ~~~l~Hiaf~v~d~~dvd~~~~~L~~~Gv~~~~-~~~~-~~-~~s~yf~DPdG~~iEl~~~~ 121 (157)
T cd08347 63 AGTVHHVAFRVPDDEELEAWKERLEALGLPVSG-IVDR-FY-FKSLYFREPGGILFEIATDG 121 (157)
T ss_pred CCceEEEEEECCCHHHHHHHHHHHHHCCCCccc-cccc-cc-EEEEEEECCCCcEEEEEECC
Confidence 3467899999998 99999999999998653 2222 22 58999999999999999864
No 36
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.03 E-value=8.8e-10 Score=82.17 Aligned_cols=57 Identities=18% Similarity=0.162 Sum_probs=45.4
Q ss_pred CCCCceEEEEeCCHHHHH---HHHHHCCcEEeeeccccC-CceEEEEEEEcCCCCEEEEEee
Q 032603 22 NPKDNHISFQCENMAIVE---RRLKEMKIDYVKSRVEEG-GINVDQLFFHDPDGSMIEICNC 79 (137)
Q Consensus 22 np~~~HIAF~VedId~v~---~rLke~GI~~~~~~~~~~-g~g~r~vFf~DPDGn~IEI~e~ 79 (137)
.++.+|+||.|+|++++. ++|+++|+++...+.... +. ..++||+|||||.|||...
T Consensus 65 ~~g~~Hiaf~v~die~~~~~~~~L~~~Gv~v~~~~g~~~~g~-~~~~y~~DPdG~~iEl~~~ 125 (153)
T cd07257 65 ESGVHHAAFEVHDFDAQGLGHDYLREKGYEHVWGVGRHILGS-QIFDYWFDPWGFIVEHYTD 125 (153)
T ss_pred CCceeEEEEEcCCHHHHHHHHHHHHHCCCcEeecCCccCCCC-CEEEEEECCCCCEEEEEcC
Confidence 467899999999999987 999999999875542211 21 3578999999999999854
No 37
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.01 E-value=3.4e-09 Score=73.29 Aligned_cols=55 Identities=11% Similarity=0.257 Sum_probs=45.5
Q ss_pred CCCCceEEEEeCC---HHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEe
Q 032603 22 NPKDNHISFQCEN---MAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 78 (137)
Q Consensus 22 np~~~HIAF~Ved---Id~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e 78 (137)
.++..|++|.+++ ++++++++++.|+++...+.. .++| +.+||+|||||+|||+.
T Consensus 57 ~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~v~~~~~~-~~~g-~~~~~~DPdGn~ie~~~ 114 (114)
T cd07261 57 TGGGSELAFMVDDGAAVDALYAEWQAKGVKIIQEPTE-MDFG-YTFVALDPDGHRLRVFA 114 (114)
T ss_pred CCCceEEEEEcCCHHHHHHHHHHHHHCCCeEecCccc-cCCc-cEEEEECCCCCEEEeeC
Confidence 4567899999985 889999999999999876643 2344 68999999999999973
No 38
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.00 E-value=2e-09 Score=74.31 Aligned_cols=53 Identities=23% Similarity=0.388 Sum_probs=43.4
Q ss_pred CCCCceEEEEeC---CHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEE
Q 032603 22 NPKDNHISFQCE---NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEIC 77 (137)
Q Consensus 22 np~~~HIAF~Ve---dId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~ 77 (137)
..+..|+||.|+ ++++++++++++|+++...... .+ .+.+||+|||||+|||.
T Consensus 71 ~~~~~hi~f~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~--~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 71 PGQIHHIAFSVPSEASLDAWRERLRAAGVPVSGVVDH-FG--ERSIYFEDPDGLRLELT 126 (126)
T ss_pred CCcEEEEEEEcCCHHHHHHHHHHHHHcCCcccceEee-cc--eEEEEEECCCCCEEEeC
Confidence 345789999998 5799999999999998764322 23 58999999999999984
No 39
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=98.99 E-value=1.6e-09 Score=78.83 Aligned_cols=57 Identities=26% Similarity=0.464 Sum_probs=46.9
Q ss_pred CCCceEEEEeC--CHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEeec
Q 032603 23 PKDNHISFQCE--NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCD 80 (137)
Q Consensus 23 p~~~HIAF~Ve--dId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~~ 80 (137)
.+.+|++|.++ |+++++++|+++|+++...+.... .+.+.+||+|||||+|||++..
T Consensus 62 ~~~~hiaf~v~~~dv~~~~~~l~~~G~~i~~~~~~~~-~~~~~~~~~DPdGn~iEl~~~~ 120 (139)
T PRK04101 62 QSYTHIAFSIEEEDFDHWYQRLKENDVNILPGRERDE-RDKKSIYFTDPDGHKFEFHTGT 120 (139)
T ss_pred CCeeEEEEEecHHHHHHHHHHHHHCCceEcCCccccC-CCceEEEEECCCCCEEEEEeCC
Confidence 35789999998 999999999999999876543222 2358999999999999998754
No 40
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=98.98 E-value=1.8e-09 Score=78.03 Aligned_cols=56 Identities=14% Similarity=0.080 Sum_probs=43.6
Q ss_pred CCCceEEEEeCCHHHHH---HHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEe
Q 032603 23 PKDNHISFQCENMAIVE---RRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 78 (137)
Q Consensus 23 p~~~HIAF~VedId~v~---~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e 78 (137)
.+.+|+||.|+|++++. ++|+++|+++...+......+.+++||+|||||+||+..
T Consensus 61 ~g~~hiaf~v~d~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~ 119 (134)
T cd08360 61 AGFHHAAFEVGDIDEVMLGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGA 119 (134)
T ss_pred CcceEEEEEeCCHHHHHHHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEc
Confidence 57899999999988777 599999999875432211112467999999999999985
No 41
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.97 E-value=4.5e-09 Score=72.73 Aligned_cols=54 Identities=22% Similarity=0.367 Sum_probs=44.6
Q ss_pred CCCceEEEEeC--CHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEe
Q 032603 23 PKDNHISFQCE--NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 78 (137)
Q Consensus 23 p~~~HIAF~Ve--dId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e 78 (137)
.+..|++|.++ |+++++++|+++|+++...... ..+.+.+||+|||||.||+++
T Consensus 66 ~~~~~~~~~v~~~dl~~~~~~l~~~g~~~~~~~~~--~~~~~~~~~~DP~G~~ie~~~ 121 (122)
T cd08354 66 SGPGHFAFAIPAEELAEWEAHLEAKGVAIESEVQW--PRGGRSLYFRDPDGNLLELAT 121 (122)
T ss_pred CCccEEEEEcCHHHHHHHHHHHHhcCCceeccccC--CCCeeEEEEECCCCCEEEEec
Confidence 36789999994 8999999999999998765431 223589999999999999986
No 42
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=98.97 E-value=4.4e-09 Score=69.21 Aligned_cols=55 Identities=24% Similarity=0.439 Sum_probs=45.8
Q ss_pred CCCCCceEEEEeCCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEE
Q 032603 21 INPKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEI 76 (137)
Q Consensus 21 inp~~~HIAF~VedId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI 76 (137)
..++..|++|.|+|+++++++|+++|+.+...+.. ...+.+.+|+.||+|+.+||
T Consensus 58 ~~~~~~~~~~~v~~~~~~~~~l~~~g~~~~~~~~~-~~~~~~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 58 SGGGGVHLAFEVDDVDAAYERLKAAGVEVLGEPRE-EPWGGRVAYFRDPDGNLIEL 112 (112)
T ss_pred cCCCeeEEEEECCCHHHHHHHHHHcCCcccCCCcC-CCCCcEEEEEECCCCcEEeC
Confidence 35567899999999999999999999999876531 12236899999999999986
No 43
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=98.96 E-value=1.7e-09 Score=78.24 Aligned_cols=58 Identities=26% Similarity=0.485 Sum_probs=46.9
Q ss_pred CCCCceEEEEeCC--HHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEeec
Q 032603 22 NPKDNHISFQCEN--MAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCD 80 (137)
Q Consensus 22 np~~~HIAF~Ved--Id~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~~ 80 (137)
..+.+|+||.+++ +++++++|++.|+++...+....+ +.+.+||.|||||+|||.+.+
T Consensus 57 ~~~~~hiaf~v~~~dld~~~~~l~~~G~~~~~~~~~~~~-~~~~~~f~DPdG~~iEl~~~~ 116 (131)
T cd08363 57 RQSYTHIAFTIEDSEFDAFYTRLKEAGVNILPGRKRDVR-DRKSIYFTDPDGHKLEVHTGT 116 (131)
T ss_pred CccceEEEEEecHHHHHHHHHHHHHcCCcccCCCccccC-cceEEEEECCCCCEEEEecCc
Confidence 3467899999984 999999999999998754432212 258999999999999999865
No 44
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=98.96 E-value=1.7e-09 Score=74.33 Aligned_cols=55 Identities=27% Similarity=0.517 Sum_probs=44.1
Q ss_pred CCCceEEEEeC--CHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEe
Q 032603 23 PKDNHISFQCE--NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 78 (137)
Q Consensus 23 p~~~HIAF~Ve--dId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e 78 (137)
.+.+|++|.|+ ++++++++|+++|+++........+ +.+.+||+|||||+|||+.
T Consensus 54 ~~~~hiaf~v~~~d~~~~~~~l~~~G~~~~~~~~~~~~-~~~~~~~~DPdG~~iEi~~ 110 (113)
T cd08345 54 RTYTHIAFQIQSEEFDEYTERLKALGVEMKPERPRVQG-EGRSIYFYDPDGHLLELHA 110 (113)
T ss_pred CCccEEEEEcCHHHHHHHHHHHHHcCCccCCCccccCC-CceEEEEECCCCCEEEEEe
Confidence 35789999995 7999999999999998754322221 2489999999999999984
No 45
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=98.95 E-value=4.2e-09 Score=73.62 Aligned_cols=53 Identities=17% Similarity=0.290 Sum_probs=43.9
Q ss_pred CCceEEEEeC---CHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEE
Q 032603 24 KDNHISFQCE---NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEIC 77 (137)
Q Consensus 24 ~~~HIAF~Ve---dId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~ 77 (137)
+..|++|.+. |+++++++|+++|+++...+.. ..+|.+.+||+|||||+|||+
T Consensus 66 ~~~~l~~~~~~~~dvd~~~~~l~~~G~~~~~~~~~-~~~g~~~~~~~DPdG~~iel~ 121 (122)
T cd07235 66 HRIALAFLCETPAEVDALYAELVGAGYPGHKEPWD-APWGQRYAIVKDPDGNLVDLF 121 (122)
T ss_pred CcEEEEEEcCCHHHHHHHHHHHHHCCCCcCCCCcc-CCCCCEEEEEECCCCCEEEEe
Confidence 4568999875 8999999999999998866532 334568899999999999996
No 46
>PLN02300 lactoylglutathione lyase
Probab=98.94 E-value=3.8e-09 Score=86.11 Aligned_cols=63 Identities=21% Similarity=0.200 Sum_probs=50.7
Q ss_pred CCCCCceEEEEeCCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEeecCCC
Q 032603 21 INPKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVLP 83 (137)
Q Consensus 21 inp~~~HIAF~VedId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~~~~p 83 (137)
.+++..|+||.|+|+++++++|+++|+++...+....+.+.+.+||+|||||+|||++...-|
T Consensus 90 ~~~g~~hia~~v~dvd~~~~~l~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~~~~ 152 (286)
T PLN02300 90 IGTGFGHFGIAVEDVAKTVELVKAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRGPTP 152 (286)
T ss_pred cCCCccEEEEEeCCHHHHHHHHHHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCCCCC
Confidence 455788999999999999999999999988765332221257889999999999999875443
No 47
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=98.94 E-value=3.1e-09 Score=73.74 Aligned_cols=58 Identities=22% Similarity=0.368 Sum_probs=43.3
Q ss_pred CCCCCceEEEEeCCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCC--CCEEEEEe
Q 032603 21 INPKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPD--GSMIEICN 78 (137)
Q Consensus 21 inp~~~HIAF~VedId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPD--Gn~IEI~e 78 (137)
..++..|++|.|+|+++++++|+++|+++...+......|.+.+|+.||| |++|||++
T Consensus 69 ~~~g~~h~~f~v~d~~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 69 RGEGLHHIAFEVDDIDAALARLKAQGVRLLQEGPRIGAGGKRVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred CCCceEEEEEEeCCHHHHHHHHHHCCCeeeccCCCccCCCCEEEEEecCCCceEEEEecC
Confidence 35678899999999999999999999999876531222223444444445 99999974
No 48
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=98.94 E-value=3.9e-09 Score=75.65 Aligned_cols=59 Identities=27% Similarity=0.378 Sum_probs=46.1
Q ss_pred CCCCceEEEEeCCHH---HHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEeec
Q 032603 22 NPKDNHISFQCENMA---IVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCD 80 (137)
Q Consensus 22 np~~~HIAF~VedId---~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~~ 80 (137)
.++..|++|.|+|++ +++++|+++|+++...+...+..+.+++||+|||||+|||.+..
T Consensus 57 ~~~~~hl~~~v~d~~~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~ 118 (131)
T cd08343 57 RPGLHHVAFEVESLDDILRAADRLAANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAEM 118 (131)
T ss_pred CCCeeEEEEEcCCHHHHHHHHHHHHHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcCC
Confidence 457889999999875 78899999999998755322211247899999999999998643
No 49
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.93 E-value=9e-09 Score=71.86 Aligned_cols=56 Identities=27% Similarity=0.360 Sum_probs=44.4
Q ss_pred CCCCCceEEEEeC---CHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEee
Q 032603 21 INPKDNHISFQCE---NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNC 79 (137)
Q Consensus 21 inp~~~HIAF~Ve---dId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~ 79 (137)
..++..|++|.|+ ++++++++|+++|+++.... . .+. .+.+||+|||||+|||...
T Consensus 61 ~~~~~~hi~f~v~~~~~v~~~~~~l~~~g~~~~~~~-~-~~~-~~~~~~~DPdG~~iEi~~~ 119 (125)
T cd07255 61 GATGLYHFAILLPSRADLAAALRRLIELGIPLVGAS-D-HLV-SEALYLSDPEGNGIEIYAD 119 (125)
T ss_pred CCCcEEEEEEECCCHHHHHHHHHHHHHcCCceeccc-c-ccc-eeEEEEECCCCCEEEEEEe
Confidence 3456789999997 48999999999999886532 2 233 3789999999999999743
No 50
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=98.93 E-value=3.2e-09 Score=78.66 Aligned_cols=58 Identities=26% Similarity=0.374 Sum_probs=44.8
Q ss_pred CCCCceEEEEeCCHHHHH---HHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEee
Q 032603 22 NPKDNHISFQCENMAIVE---RRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNC 79 (137)
Q Consensus 22 np~~~HIAF~VedId~v~---~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~ 79 (137)
.++.+|++|.|+|++++. ++|+++|+++...+...+..+.+.+||+|||||+|||++.
T Consensus 57 ~~~~~hiaf~v~d~~~l~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~ 117 (144)
T cd07239 57 HPSLNHVAFEMPSIDEVMRGIGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSE 117 (144)
T ss_pred CCceEEEEEECCCHHHHHHHHHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccC
Confidence 357889999999888775 8999999999865422111113678999999999999875
No 51
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=98.93 E-value=4.6e-09 Score=73.50 Aligned_cols=54 Identities=19% Similarity=0.246 Sum_probs=44.5
Q ss_pred CCCceEEEEeCCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEe
Q 032603 23 PKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 78 (137)
Q Consensus 23 p~~~HIAF~VedId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e 78 (137)
++..|++|.|+|.+++.+.+++.|+.+.......++ .+++||.|||||.|||..
T Consensus 56 ~~~~~~af~v~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~DPdG~~iEl~~ 109 (113)
T cd07267 56 ARFVGAAFEAASRADLEKAAALPGASVIDDLEAPGG--GKRVTLTDPDGFPVELVY 109 (113)
T ss_pred CcccEEEEEECCHHHHHHHHHcCCCeeecCCCCCCC--ceEEEEECCCCCEEEEEe
Confidence 467899999999999999999999988754321122 479999999999999974
No 52
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.92 E-value=4.9e-09 Score=73.36 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=43.5
Q ss_pred CCceEEEEeCC---HHHHHHHHHHCCcEEeeeccccC--CceEEEEEEEcCCCCEEEEE
Q 032603 24 KDNHISFQCEN---MAIVERRLKEMKIDYVKSRVEEG--GINVDQLFFHDPDGSMIEIC 77 (137)
Q Consensus 24 ~~~HIAF~Ved---Id~v~~rLke~GI~~~~~~~~~~--g~g~r~vFf~DPDGn~IEI~ 77 (137)
+..|+||.|++ +++++++++++|+++...+.... +.+.+.+||+|||||.|||+
T Consensus 64 ~~~hi~f~v~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 64 NGTHVAFAAPSREAVDAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAV 122 (123)
T ss_pred CceEEEEECCCHHHHHHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEe
Confidence 45799999986 78899999999999886653321 23357899999999999996
No 53
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=98.92 E-value=4.8e-09 Score=77.87 Aligned_cols=58 Identities=19% Similarity=0.271 Sum_probs=44.8
Q ss_pred CCCCceEEEEeCCH---HHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEee
Q 032603 22 NPKDNHISFQCENM---AIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNC 79 (137)
Q Consensus 22 np~~~HIAF~VedI---d~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~ 79 (137)
.++.+|+||.|+|+ ++++++|+++|+++...+......+.+.+||+||||++||+...
T Consensus 54 ~~gl~Hiaf~v~~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~ 114 (141)
T cd07258 54 SSHFHHVNFMVTDIDDIGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFG 114 (141)
T ss_pred CCceEEEEEECCCHHHHHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeC
Confidence 45789999999865 56799999999998765432111124789999999999999753
No 54
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=98.92 E-value=4.6e-09 Score=75.07 Aligned_cols=57 Identities=19% Similarity=0.316 Sum_probs=44.3
Q ss_pred CCCceEEEEeCC---HHHHHHHHHHCCcEEeeeccccC--CceEEEEEEEcCCCCEEEEEee
Q 032603 23 PKDNHISFQCEN---MAIVERRLKEMKIDYVKSRVEEG--GINVDQLFFHDPDGSMIEICNC 79 (137)
Q Consensus 23 p~~~HIAF~Ved---Id~v~~rLke~GI~~~~~~~~~~--g~g~r~vFf~DPDGn~IEI~e~ 79 (137)
++..|+||+|++ +++++++|+++|+++...+.... ..+.+++||+|||||.||+...
T Consensus 58 ~~~~~iaf~v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~ 119 (124)
T cd08361 58 PAEQASGFELRDDDALESAATELEQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVR 119 (124)
T ss_pred CceEEEEEEECCHHHHHHHHHHHHHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEe
Confidence 566899999985 99999999999999876442111 1124678999999999999744
No 55
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.91 E-value=3.8e-09 Score=74.52 Aligned_cols=53 Identities=13% Similarity=0.297 Sum_probs=42.2
Q ss_pred CceEEEEeCCHHHHHHHHHHCCcEEeee-----ccccCCceEEEEEEEcCCCCEEEEEe
Q 032603 25 DNHISFQCENMAIVERRLKEMKIDYVKS-----RVEEGGINVDQLFFHDPDGSMIEICN 78 (137)
Q Consensus 25 ~~HIAF~VedId~v~~rLke~GI~~~~~-----~~~~~g~g~r~vFf~DPDGn~IEI~e 78 (137)
..|++|.|+|+++++++|+++|+++... +.. ..+|.+.+||+|||||+|+|.+
T Consensus 56 ~~~~~~~v~did~~~~~l~~~G~~~~~~~~~~~~~~-~~~g~r~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 56 NSMLHLEVDDLEAYYEHIKALGLPKKFPGVKLPPIT-QPWWGREFFLHDPSGVLWHIGQ 113 (113)
T ss_pred CCEEEEEECCHHHHHHHHHHcCCcccccceecCccc-cCCCcEEEEEECCCccEEEeeC
Confidence 4589999999999999999999975321 111 1244699999999999999864
No 56
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=98.91 E-value=4.7e-09 Score=72.84 Aligned_cols=58 Identities=17% Similarity=0.229 Sum_probs=45.6
Q ss_pred CCCCceEEEEe---CCHHHHHHHHHHCCcEEeeeccc-cCCceEEEEEEEcCCCCEEEEEee
Q 032603 22 NPKDNHISFQC---ENMAIVERRLKEMKIDYVKSRVE-EGGINVDQLFFHDPDGSMIEICNC 79 (137)
Q Consensus 22 np~~~HIAF~V---edId~v~~rLke~GI~~~~~~~~-~~g~g~r~vFf~DPDGn~IEI~e~ 79 (137)
+++..|++|.| +++++++++|+++|+++...+.. ...++.+.+||+|||||.|||+..
T Consensus 56 ~~~~~~~~~~v~~~~~l~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~ 117 (120)
T cd08362 56 RNRLDVVSFSVASRADVDALARQVAARGGTVLSEPGATDDPGGGYGFRFFDPDGRLIEFSAD 117 (120)
T ss_pred CCCCceEEEEeCCHHHHHHHHHHHHHcCCceecCCcccCCCCCceEEEEECCCCCEEEEEec
Confidence 34678999999 47999999999999998865421 112235789999999999999864
No 57
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=98.90 E-value=7e-09 Score=72.45 Aligned_cols=57 Identities=21% Similarity=0.263 Sum_probs=45.4
Q ss_pred CCCceEEEEeCC---HHHHHHHHHHCCcEEeeeccccC-CceEEEEEEEcCCCCEEEEEee
Q 032603 23 PKDNHISFQCEN---MAIVERRLKEMKIDYVKSRVEEG-GINVDQLFFHDPDGSMIEICNC 79 (137)
Q Consensus 23 p~~~HIAF~Ved---Id~v~~rLke~GI~~~~~~~~~~-g~g~r~vFf~DPDGn~IEI~e~ 79 (137)
++..|++|.+++ +++++++|+++|+++...+.... +...+++||+|||||+|||+..
T Consensus 57 ~~~~h~~f~v~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 117 (120)
T cd07254 57 GGLNHLGVQVDSAEEVAEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVT 117 (120)
T ss_pred CCeeEEEEEeCCHHHHHHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEe
Confidence 578899999987 88999999999999886542111 1114789999999999999864
No 58
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=98.90 E-value=4.2e-09 Score=78.57 Aligned_cols=57 Identities=12% Similarity=0.148 Sum_probs=44.6
Q ss_pred CCCceEEEEeCCHH---HHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEee
Q 032603 23 PKDNHISFQCENMA---IVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNC 79 (137)
Q Consensus 23 p~~~HIAF~VedId---~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~ 79 (137)
++.+|+||.|+|++ +++++|+++|+++...+...+..+.+++||+|||||+||+..-
T Consensus 72 ~g~~Hiaf~V~d~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~ 131 (154)
T cd07237 72 KRIHHLMLEVTSLDDVGRAYDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWG 131 (154)
T ss_pred ceeEEEEEEcCCHHHHHHHHHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccC
Confidence 57889999998755 6899999999999865422111235899999999999999743
No 59
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=98.90 E-value=3.7e-09 Score=73.81 Aligned_cols=55 Identities=25% Similarity=0.283 Sum_probs=43.9
Q ss_pred CCCceEEEEeC---CHHHHHHHHHHCCcEEeeecc-ccCCceEEEEEEEcCCCCEEEEEe
Q 032603 23 PKDNHISFQCE---NMAIVERRLKEMKIDYVKSRV-EEGGINVDQLFFHDPDGSMIEICN 78 (137)
Q Consensus 23 p~~~HIAF~Ve---dId~v~~rLke~GI~~~~~~~-~~~g~g~r~vFf~DPDGn~IEI~e 78 (137)
++..|++|.|. ++++++++|+++|+++...+. ...+. .+.+||.|||||+||++.
T Consensus 59 ~~~~hi~~~v~~~~dv~~~~~~l~~~g~~~~~~~~~~~~~~-~~~~~~~DPdG~~ve~~~ 117 (121)
T cd07266 59 AGLGHIAFRVRSEEDLDKAEAFFQELGLPTEWVEAGEEPGQ-GRALRVEDPLGFPIEFYA 117 (121)
T ss_pred CceeEEEEECCCHHHHHHHHHHHHHcCCCcccccCCcCCCC-ccEEEEECCCCCEEEEEe
Confidence 47889999994 799999999999999876422 12222 378999999999999984
No 60
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=98.87 E-value=6e-09 Score=73.25 Aligned_cols=55 Identities=16% Similarity=0.186 Sum_probs=42.9
Q ss_pred CCCCceEEEEeC---CHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEe
Q 032603 22 NPKDNHISFQCE---NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 78 (137)
Q Consensus 22 np~~~HIAF~Ve---dId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e 78 (137)
.++.+|+||.++ ++++++++|+++|+++...... .+. .+.+||+|||||+||+..
T Consensus 60 ~~~~~h~af~v~~~~~v~~~~~~l~~~G~~~~~~~~~-~~~-~~~~~~~DPdG~~iEl~~ 117 (121)
T cd09013 60 EAGLGHIAWRASSPEALERRVAALEASGLGIGWIEGD-PGH-GKAYRFRSPDGHPMELYW 117 (121)
T ss_pred CCceEEEEEEcCCHHHHHHHHHHHHHcCCccccccCC-CCC-cceEEEECCCCCEEEEEE
Confidence 357889999997 5889999999999997532211 122 368999999999999984
No 61
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=98.87 E-value=2.3e-08 Score=71.04 Aligned_cols=55 Identities=27% Similarity=0.427 Sum_probs=43.9
Q ss_pred CCCceEEEEeCCHH---HHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEeec
Q 032603 23 PKDNHISFQCENMA---IVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCD 80 (137)
Q Consensus 23 p~~~HIAF~VedId---~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~~ 80 (137)
++.+|++|.|+|++ +++++|++.|+++..... .++ .+.+||+|||||+|||....
T Consensus 64 ~~~~h~~f~v~~~~~v~~~~~~l~~~G~~~~~~~~-~~~--~~~~~~~DP~G~~ie~~~~~ 121 (134)
T cd08348 64 AGLNHIAFEVDSLDDLRDLYERLRAAGITPVWPVD-HGN--AWSIYFRDPDGNRLELFVDT 121 (134)
T ss_pred CCceEEEEEeCCHHHHHHHHHHHHHCCCCccccCC-CCc--eeEEEEECCCCCEEEEEEcC
Confidence 46789999999765 577999999999886542 222 47899999999999998543
No 62
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=98.85 E-value=1.7e-08 Score=71.33 Aligned_cols=56 Identities=20% Similarity=0.303 Sum_probs=44.7
Q ss_pred CCCceEEEEeC---CHHHHHHHHHHCCcEEeeeccc---cCCceEEEEEEEcCCCCEEEEEee
Q 032603 23 PKDNHISFQCE---NMAIVERRLKEMKIDYVKSRVE---EGGINVDQLFFHDPDGSMIEICNC 79 (137)
Q Consensus 23 p~~~HIAF~Ve---dId~v~~rLke~GI~~~~~~~~---~~g~g~r~vFf~DPDGn~IEI~e~ 79 (137)
++..|++|.++ |+++++++|+++|+++...+.. ..+. .+.+||+|||||.||+...
T Consensus 56 ~~~~~~~f~v~~~~dl~~~~~~l~~~Gv~~~~~~~~~~~~~~~-~~~~~~~DPdG~~iE~~~~ 117 (120)
T cd07252 56 DDLAYAGWEVADEAALDALAARLRAAGVAVEEGSAELAAERGV-EGLIRFADPDGNRHELFWG 117 (120)
T ss_pred CceeEEEEEECCHHHHHHHHHHHHHcCCeEEEcCHHHHhhCCC-cEEEEEECCCCCEEEEEec
Confidence 46789999997 4999999999999999864421 1222 3799999999999999864
No 63
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=98.84 E-value=6.8e-09 Score=73.30 Aligned_cols=53 Identities=26% Similarity=0.521 Sum_probs=43.6
Q ss_pred CCCceEEEEe--CCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEee
Q 032603 23 PKDNHISFQC--ENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNC 79 (137)
Q Consensus 23 p~~~HIAF~V--edId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~ 79 (137)
++..|++|.+ +++++++++|+++|+++...+. ..+ +.+||.|||||.|||+.-
T Consensus 56 ~~~~hi~f~v~~~dl~~~~~~l~~~G~~~~~~~~-~~~---~~~~f~DPdG~~ie~~~~ 110 (121)
T cd07244 56 KDYTHYAFSVSEEDFASLKEKLRQAGVKEWKENT-SEG---DSFYFLDPDGHKLELHVG 110 (121)
T ss_pred CCeeeEEEEeCHHHHHHHHHHHHHcCCcccCCCC-CCc---cEEEEECCCCCEEEEEeC
Confidence 4578999999 4799999999999999875432 223 699999999999999853
No 64
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=98.83 E-value=1e-08 Score=71.52 Aligned_cols=52 Identities=21% Similarity=0.404 Sum_probs=40.7
Q ss_pred CceEEE--EeCCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEee
Q 032603 25 DNHISF--QCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNC 79 (137)
Q Consensus 25 ~~HIAF--~VedId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~ 79 (137)
..|++| .++|+++++++|+++|+++...+.. .+ .+.+||.|||||.|||...
T Consensus 56 ~~~~~~~~~~~d~~~~~~~l~~~Gi~~~~~~~~-~~--~~~~~~~DP~Gn~iel~~~ 109 (112)
T cd08344 56 LAYLSFGIFEDDFAAFARHLEAAGVALAAAPPG-AD--PDGVWFRDPDGNLLQVKVA 109 (112)
T ss_pred eeeEEEEeEhhhHHHHHHHHHHcCCceecCCCc-CC--CCEEEEECCCCCEEEEecC
Confidence 455544 5589999999999999998865422 22 4689999999999999854
No 65
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=98.83 E-value=1.5e-08 Score=69.59 Aligned_cols=56 Identities=21% Similarity=0.376 Sum_probs=45.7
Q ss_pred CCCceEEEEeC---CHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEee
Q 032603 23 PKDNHISFQCE---NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNC 79 (137)
Q Consensus 23 p~~~HIAF~Ve---dId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~ 79 (137)
++..|++|.|+ ++++++++|+++|+++...+....+ +.+.+||.|||||++|+...
T Consensus 56 ~~~~h~~~~v~~~~~v~~~~~~l~~~g~~~~~~~~~~~~-~~~~~~~~DP~G~~ie~~~~ 114 (117)
T cd07240 56 PGVDALGFEVASEEDLEALAAHLEAAGVAPEEASDPEPG-VGRGLRFQDPDGHLLELFVE 114 (117)
T ss_pred CCceeEEEEcCCHHHHHHHHHHHHHcCCceEEcCccCCC-CceEEEEECCCCCEEEEEEc
Confidence 46789999997 6899999999999999876532222 24899999999999999843
No 66
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=98.82 E-value=1.3e-08 Score=76.38 Aligned_cols=59 Identities=25% Similarity=0.329 Sum_probs=43.1
Q ss_pred CCCCceEEEEeCC---HHHHHHHHHHCCcEEe--eeccccCCceEEEEEEEcCCCCEEEEEeec
Q 032603 22 NPKDNHISFQCEN---MAIVERRLKEMKIDYV--KSRVEEGGINVDQLFFHDPDGSMIEICNCD 80 (137)
Q Consensus 22 np~~~HIAF~Ved---Id~v~~rLke~GI~~~--~~~~~~~g~g~r~vFf~DPDGn~IEI~e~~ 80 (137)
.++.+|+||.|+| +++++++|+++|+... ..+...+..+.+++||+|||||+||+....
T Consensus 61 ~~~~~Hiaf~v~~~~~v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~~ 124 (161)
T cd07256 61 GPRLHHVAFWVPEPHNIIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTGD 124 (161)
T ss_pred CCceeEEEEEcCCHHHHHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeecC
Confidence 4578899999986 7778899999998632 222111112247899999999999998644
No 67
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.80 E-value=3.3e-08 Score=68.12 Aligned_cols=54 Identities=20% Similarity=0.242 Sum_probs=42.1
Q ss_pred CCceEEEEe---CCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEe
Q 032603 24 KDNHISFQC---ENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 78 (137)
Q Consensus 24 ~~~HIAF~V---edId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e 78 (137)
+..|++|.+ +|+++++++|++.|+++...+... .+|.+.+||+|||||+|||..
T Consensus 64 ~~~~~~~~~~~~~d~~~~~~~l~~~G~~~~~~~~~~-~~g~~~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 64 SGITLAHNVRSEEEVDAVLARAAAAGATIVKPPQDV-FWGGYSGYFADPDGHLWEVAH 120 (121)
T ss_pred cceEEEEEcCCHHHHHHHHHHHHhCCCEEecCCccC-CCCceEEEEECCCCCEEEEee
Confidence 345677665 589999999999999998654322 233589999999999999964
No 68
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=98.76 E-value=2.2e-08 Score=81.29 Aligned_cols=61 Identities=16% Similarity=0.237 Sum_probs=45.3
Q ss_pred CceEEEEeCC---HHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEeecCCCCcc
Q 032603 25 DNHISFQCEN---MAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVLPVVP 86 (137)
Q Consensus 25 ~~HIAF~Ved---Id~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~~~~p~~p 86 (137)
.+|+||.|+| +++++++|+++|+++...+...+..+.+++||+|||||+||+. ++...+.|
T Consensus 208 ~~Hiaf~v~~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~-~~~~~~~~ 271 (303)
T TIGR03211 208 LHHVSFFLDSWEDVLKAADVMSKNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETF-GGGYLAYP 271 (303)
T ss_pred eEEEEEEcCCHHHHHHHHHHHHhCCCceeeCCcccCCCCceEEEEECCCCCEEEEe-cCCeeecC
Confidence 8899999997 4556789999999987655322211247999999999999998 55544443
No 69
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=98.75 E-value=2.7e-08 Score=75.29 Aligned_cols=58 Identities=14% Similarity=0.158 Sum_probs=44.0
Q ss_pred CCceEEEEeCC---HHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEeecC
Q 032603 24 KDNHISFQCEN---MAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDV 81 (137)
Q Consensus 24 ~~~HIAF~Ved---Id~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~~~ 81 (137)
+.+|+||+|+| +++++++|+++|+++...+...+......+||+|||||+|||.+...
T Consensus 69 ~~~hiaf~v~~~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~~~ 129 (166)
T cd09014 69 RLHHLAYALDTREDVLRAADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGGGG 129 (166)
T ss_pred CceEEEEECCCHHHHHHHHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEcCC
Confidence 57899999986 55788999999999865443222112356999999999999998733
No 70
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=98.72 E-value=4e-08 Score=67.38 Aligned_cols=53 Identities=26% Similarity=0.382 Sum_probs=40.4
Q ss_pred CCceEEEEeC---CHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEE
Q 032603 24 KDNHISFQCE---NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEI 76 (137)
Q Consensus 24 ~~~HIAF~Ve---dId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI 76 (137)
...|++|.+. |+++++++|++.|+++...+......+...+||+|||||+|||
T Consensus 73 ~~~~i~~~~~~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 73 GGHHIAFLAFDVDDLDAAYERLKAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp TSEEEEEEESSHHHHHHHHHHHHHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred cceeEEEEeccHHHHHHHHHHHhhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 4567777775 6888999999999999987643222224556899999999997
No 71
>PLN02300 lactoylglutathione lyase
Probab=98.67 E-value=7.4e-08 Score=78.54 Aligned_cols=60 Identities=15% Similarity=0.082 Sum_probs=50.2
Q ss_pred CCCCceEEEEeCCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEeecC
Q 032603 22 NPKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDV 81 (137)
Q Consensus 22 np~~~HIAF~VedId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~~~ 81 (137)
.++..|++|.|+|+++++++++++|+++...+....+.+.+.++|+||||+.++|.+...
T Consensus 221 g~~~~~i~~~v~di~~~~~~~~~~G~~v~~~p~~~p~~~~~~~~~~DPdG~~i~~~~~~~ 280 (286)
T PLN02300 221 GNAYAQIAIGTDDVYKTAEAIKLVGGKITREPGPLPGINTKITACLDPDGWKTVFVDNID 280 (286)
T ss_pred CCceeEEEEecCCHHHHHHHHHHcCCeEecCCccCCCCceEEEEEECCCCCEEEEEccch
Confidence 356789999999999999999999999998654333333579999999999999998665
No 72
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=98.66 E-value=6.3e-08 Score=77.99 Aligned_cols=57 Identities=23% Similarity=0.364 Sum_probs=42.3
Q ss_pred CCCCceEEEEeCCH---HHHHHHHHHCCcE--EeeeccccCCc-eEEEEEEEcCCCCEEEEEee
Q 032603 22 NPKDNHISFQCENM---AIVERRLKEMKID--YVKSRVEEGGI-NVDQLFFHDPDGSMIEICNC 79 (137)
Q Consensus 22 np~~~HIAF~VedI---d~v~~rLke~GI~--~~~~~~~~~g~-g~r~vFf~DPDGn~IEI~e~ 79 (137)
.++.+|+||.|+|. +++.++|+++|++ +...+.. .+. +..++||+|||||+||+...
T Consensus 194 ~~~~~Hiaf~v~d~~~v~~~~~~l~~~G~~~~~~~~p~~-~~~~~~~~~y~~DP~G~~iEl~~~ 256 (294)
T TIGR02295 194 GPRLHHIAYWVHDPLNIIKACDILASAGLSDSIERGPGR-HGVSNAFFLYLRDPDGHRIELYTG 256 (294)
T ss_pred CCceeeEEEEcCCHHHHHHHHHHHHhCCCCcccccCCcc-CCCCcceEEEEECCCCCEEEEEec
Confidence 36789999999984 4568999999997 4433321 121 13679999999999999863
No 73
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=98.65 E-value=9.4e-08 Score=77.28 Aligned_cols=56 Identities=13% Similarity=0.154 Sum_probs=42.5
Q ss_pred CCCCceEEEEeCCHHH---HHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEe
Q 032603 22 NPKDNHISFQCENMAI---VERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 78 (137)
Q Consensus 22 np~~~HIAF~VedId~---v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e 78 (137)
.++.+|+||+|+|+++ ++++|+++|+.+...... +..+.+++||+||||++||+..
T Consensus 204 ~~~~~Hiaf~v~d~~~v~~~~~~l~~~G~~~~~~~r~-~~~~~~~~y~~DP~G~~iE~~~ 262 (286)
T TIGR03213 204 EKRLNHLMLEVDTLDDVGLALDRVDADGIVASTLGRH-TNDHMVSFYVATPSGWLVEYGW 262 (286)
T ss_pred CCceEEEEEEcCCHHHHHHHHHHHHHCCCEEecCCcC-CCCCeEEEEEECCCCcEEEeec
Confidence 4578999999998776 799999999943322211 1123589999999999999976
No 74
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=98.61 E-value=1.3e-07 Score=76.08 Aligned_cols=55 Identities=18% Similarity=0.158 Sum_probs=45.7
Q ss_pred CCCCceEEEEeC---CHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEee
Q 032603 22 NPKDNHISFQCE---NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNC 79 (137)
Q Consensus 22 np~~~HIAF~Ve---dId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~ 79 (137)
.++..|++|.|+ |+++++++|+++|+++.....+ ++ .+.+||+|||||.|||+..
T Consensus 58 ~~~~~hiaf~v~~~~dl~~~~~~l~~~Gv~v~~~~~~-~~--~~~~~~~DPdG~~iEl~~~ 115 (294)
T TIGR02295 58 SAALSYIGFRVSKEEDLDKAADFFQKLGHPVRLVRDG-GQ--PEALRVEDPFGYPIEFYFE 115 (294)
T ss_pred CcCccEEEEEeCCHHHHHHHHHHHHhcCCcEEeecCC-CC--ceEEEEECCCCCEEEEEEc
Confidence 356889999997 7899999999999998865422 22 4899999999999999863
No 75
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=98.55 E-value=2.5e-07 Score=75.12 Aligned_cols=58 Identities=19% Similarity=0.306 Sum_probs=46.1
Q ss_pred CCCCceEEEEeC---CHHHHHHHHHHCCcEEeeecc-ccCCceEEEEEEEcCCCCEEEEEeec
Q 032603 22 NPKDNHISFQCE---NMAIVERRLKEMKIDYVKSRV-EEGGINVDQLFFHDPDGSMIEICNCD 80 (137)
Q Consensus 22 np~~~HIAF~Ve---dId~v~~rLke~GI~~~~~~~-~~~g~g~r~vFf~DPDGn~IEI~e~~ 80 (137)
.++.+|+||.|+ ++++++++|+++|+++...+. ...+. .+.+||+|||||+|||....
T Consensus 58 ~~g~~hiaf~v~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~-g~~~~~~DPdG~~iEl~~~~ 119 (303)
T TIGR03211 58 TAGLDHMAFKVESEADLERLVKRLEAYGVGTGWIPAGELPGV-GRRVRFTLPSGHTMELYAEK 119 (303)
T ss_pred CCceeEEEEEeCCHHHHHHHHHHHHHcCCCeeeccCCCCCCc-ceEEEEECCCCCEEEEEEcc
Confidence 346889999998 799999999999999876432 11222 37899999999999999754
No 76
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=98.46 E-value=5.7e-07 Score=72.73 Aligned_cols=55 Identities=18% Similarity=0.327 Sum_probs=44.6
Q ss_pred CCCceEEEEeCC---HHHHHHHHHHCCcEEeeeccc---cCCceEEEEEEEcCCCCEEEEEe
Q 032603 23 PKDNHISFQCEN---MAIVERRLKEMKIDYVKSRVE---EGGINVDQLFFHDPDGSMIEICN 78 (137)
Q Consensus 23 p~~~HIAF~Ved---Id~v~~rLke~GI~~~~~~~~---~~g~g~r~vFf~DPDGn~IEI~e 78 (137)
.+..|++|.|++ +++++++|+++|+++...+.. ..+ +.+.+||.|||||.||+..
T Consensus 57 ~~~~~~~f~V~~~~~l~~~~~~L~~~Gv~~~~~~~~~~~~~~-~~~~~~f~DPdGn~lEl~~ 117 (286)
T TIGR03213 57 DDLAYAGWEVADEAGLDQVKEKLEKAGVAVTVASAAEARERG-VLGLIKFTDPGGNPLEIYY 117 (286)
T ss_pred CCeeeEeeeeCCHHHHHHHHHHHHHcCCceEECCHHHhhhcc-ceEEEEEECCCCCEEEEEE
Confidence 357899999998 889999999999998865421 122 2478999999999999986
No 77
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.38 E-value=1.2e-06 Score=65.00 Aligned_cols=45 Identities=9% Similarity=0.099 Sum_probs=36.9
Q ss_pred ceEEEEeCCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEe
Q 032603 26 NHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 78 (137)
Q Consensus 26 ~HIAF~VedId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e 78 (137)
.|++|.|++. .++++|+++|+++...+. + .+|++||||++|||..
T Consensus 82 ~~~hlav~~~-d~~~~l~~~Gv~~~~~~~---~----~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 82 DFLGITIHSK-QAVSNAKKHNWPVTEVED---G----VYEVKAPGGYKFYLID 126 (127)
T ss_pred CEEEEEEECH-HHHHHHHHCCCceecCCC---C----EEEEECCCCCEEEEec
Confidence 4788888887 566999999999886431 2 8899999999999974
No 78
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=97.94 E-value=7.1e-06 Score=57.51 Aligned_cols=50 Identities=16% Similarity=0.222 Sum_probs=38.1
Q ss_pred eEEEeecCCCCCCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHCCcEEeeecc
Q 032603 2 GIHLLKSEEPDNLPKAGKNINPKDNHISFQCENMAIVERRLKEMKIDYVKSRV 54 (137)
Q Consensus 2 ~IHLl~~~~~~~~~~~~~~inp~~~HIAF~VedId~v~~rLke~GI~~~~~~~ 54 (137)
.|.|++..+...... ...++.+|+||.|+|+++++++|+++|+++.....
T Consensus 49 ~iELi~p~~~~~~~~---~~~~gi~Hia~~v~D~d~~~~~l~~~G~~~~~~~~ 98 (109)
T PF13669_consen 49 QIELIQPLDGDSPLD---RGGGGIHHIAFEVDDLDAAIARLEAQGFRVLDEGP 98 (109)
T ss_dssp EEEEEEESSTTCHHH---HTSSEEEEEEEEESHHHHHHHHHHHTTECEEECEE
T ss_pred EEEEEEeCCCCcccc---cCCCCEEEEEEEeCCHHHHHHHHHHCCCEEcccCc
Confidence 467777655431110 24668999999999999999999999999987653
No 79
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=97.86 E-value=4.7e-05 Score=63.56 Aligned_cols=56 Identities=27% Similarity=0.356 Sum_probs=45.0
Q ss_pred CCCCCceEEEEeC---CHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEee
Q 032603 21 INPKDNHISFQCE---NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNC 79 (137)
Q Consensus 21 inp~~~HIAF~Ve---dId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~ 79 (137)
-..+..|+||.++ |+..+..++.+.|+.+.... + ......+||.||+||-|||..-
T Consensus 68 ~~aGLyH~AfLlP~r~~L~~~l~hl~~~~~~l~Ga~-D--H~vSEAlYl~DPEGNGIEiYaD 126 (265)
T COG2514 68 RAAGLYHTAFLLPTREDLARVLNHLAEEGIPLVGAS-D--HLVSEALYLEDPEGNGIEIYAD 126 (265)
T ss_pred cccceeeeeeecCCHHHHHHHHHHHHhcCCcccccC-c--chhheeeeecCCCCCeEEEEec
Confidence 4458899999998 58899999999999997322 1 1225799999999999999753
No 80
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=97.45 E-value=0.00069 Score=51.11 Aligned_cols=78 Identities=19% Similarity=0.210 Sum_probs=52.5
Q ss_pred eEEEeecCCCCCCCCCCCCCCCCCceEEEE--eCCHHHHHHHHHHCCcEEeeeccc----cCCceEEEEEEEcCCCCEEE
Q 032603 2 GIHLLKSEEPDNLPKAGKNINPKDNHISFQ--CENMAIVERRLKEMKIDYVKSRVE----EGGINVDQLFFHDPDGSMIE 75 (137)
Q Consensus 2 ~IHLl~~~~~~~~~~~~~~inp~~~HIAF~--VedId~v~~rLke~GI~~~~~~~~----~~g~g~r~vFf~DPDGn~IE 75 (137)
.+||- .+...+..++...+.--..|++.. ++|--++.++|+++||.+..++.- +.|. .+.+|+.||.||-+|
T Consensus 48 v~Hl~-~q~~~~~~g~V~~~~v~~pHfGvVl~~edW~alaerlea~gi~~~i~P~vRF~Ge~gE-q~TlFl~DP~gN~lE 125 (138)
T COG3565 48 VAHLT-PQPDSQGSGKVDGHGVPPPHFGVVLPVEDWFALAERLEAAGIPFHIPPKVRFKGEPGE-QRTLFLFDPSGNALE 125 (138)
T ss_pred EEEec-CCcccccCcccCCCCCCCccceEEEEHHHHHHHHHHHHHcCCCcccCceEEecCCccc-eEEEEEECCCCCeee
Confidence 46762 222222333333444456677765 468889999999999999877631 2233 589999999999999
Q ss_pred EEeecC
Q 032603 76 ICNCDV 81 (137)
Q Consensus 76 I~e~~~ 81 (137)
+-.+..
T Consensus 126 fK~fR~ 131 (138)
T COG3565 126 FKGFRD 131 (138)
T ss_pred eecccc
Confidence 986643
No 81
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=97.44 E-value=0.00038 Score=50.01 Aligned_cols=51 Identities=14% Similarity=0.019 Sum_probs=39.9
Q ss_pred CceEEEEeCC---HHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEE
Q 032603 25 DNHISFQCEN---MAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEIC 77 (137)
Q Consensus 25 ~~HIAF~Ved---Id~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~ 77 (137)
..++++.|++ +++++++|++.| ++...+.. ..+|.+..+|+||+|+.++|.
T Consensus 75 ~~~l~i~~~~~e~v~~~~~~l~~~g-~~~~~~~~-~~~g~~~~~v~Dp~G~~W~i~ 128 (128)
T cd06588 75 GISLSVECDSEEEADRLFEALSEGG-TVLMPLQK-TFWSPLFGWVTDRFGVSWQIN 128 (128)
T ss_pred CEEEEEECCCHHHHHHHHHHHhcCC-eEeccchh-cCcccccEEEECCCCCEEEeC
Confidence 4588999986 778889998877 66655433 346678999999999999983
No 82
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=97.31 E-value=0.00013 Score=48.62 Aligned_cols=52 Identities=23% Similarity=0.426 Sum_probs=39.3
Q ss_pred CCceEEEEeCC---HHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEe
Q 032603 24 KDNHISFQCEN---MAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 78 (137)
Q Consensus 24 ~~~HIAF~Ved---Id~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e 78 (137)
+..|++|.+++ +..........|..+........+ ..+||+||||++|||.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~---~~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 84 GLGHLAFEVDDEAFGDAALAFLDPDGVRIELGEPGRGG---VHVYFRDPDGILIELAT 138 (138)
T ss_pred ccCceeEecccccccceEEEeeCCCCCEEEeecCCCcc---eEEEEECCCCcEEEeeC
Confidence 46899999998 667777777778887654421112 39999999999999963
No 83
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=97.17 E-value=0.0025 Score=48.02 Aligned_cols=57 Identities=16% Similarity=0.170 Sum_probs=46.9
Q ss_pred CCCceEEEEeCCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEeec
Q 032603 23 PKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCD 80 (137)
Q Consensus 23 p~~~HIAF~VedId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~~ 80 (137)
+..-++-|.|+|+|+..+|.++.|-++.....+-++. .+.+.|.||+||.+-|++..
T Consensus 70 ~~~~~iy~~v~did~~l~rv~~~GG~V~~p~~~~p~~-G~~a~~~Dp~Gn~~~l~s~~ 126 (127)
T COG3324 70 GGGWVIYFAVDDIDATLERVVAAGGKVLRPKTEFPGG-GRIAHFVDPEGNRFGLWSPA 126 (127)
T ss_pred CCCEEEEEecCChHHHHHHHHhcCCeEEecccccCCc-eEEEEEECCCCCEEEEeecC
Confidence 3445788889999999999999999999887544433 48999999999999998753
No 84
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=97.09 E-value=0.0033 Score=43.85 Aligned_cols=57 Identities=14% Similarity=0.100 Sum_probs=44.2
Q ss_pred ceEEEEeCCHHHHHHHHHH-CCcEEeeeccccCCceEEEEEEEcCCC-CEEEEEeecCCC
Q 032603 26 NHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDPDG-SMIEICNCDVLP 83 (137)
Q Consensus 26 ~HIAF~VedId~v~~rLke-~GI~~~~~~~~~~g~g~r~vFf~DPDG-n~IEI~e~~~~p 83 (137)
+|++|.|+|+++..+.+.+ .|+......... ..+++..|+..++| ..||++++.+-+
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~-~~~v~~~~~~~~~~~~~iELi~p~~~~ 59 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDE-PQGVRVAFLYLGDGPVQIELIQPLDGD 59 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEG-CTTEEEEEEEETTETEEEEEEEESSTT
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecC-CCCEEEEEEEeCCCcEEEEEEEeCCCC
Confidence 5999999999999999998 899876543222 23368889999998 689999976633
No 85
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=96.82 E-value=0.0025 Score=48.41 Aligned_cols=53 Identities=23% Similarity=0.197 Sum_probs=43.7
Q ss_pred ceEEEEeC---CHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEeec
Q 032603 26 NHISFQCE---NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCD 80 (137)
Q Consensus 26 ~HIAF~Ve---dId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~~ 80 (137)
--+||.+. ++|++.++..+.|-+...++...++ .+..-|.|||||.+|+.-++
T Consensus 73 vli~ls~~s~eevd~~v~ka~eaGGk~~~~~~d~gf--MYg~~fqDpDGh~wE~l~m~ 128 (133)
T COG3607 73 VLISLSAGSREEVDELVDKALEAGGKPANEPQDEGF--MYGRSFQDPDGHVWEFLWMD 128 (133)
T ss_pred EEEEeccCcHHHHHHHHHHHHHcCCCCCCCcccccc--ccceeeeCCCCCeEEEEEeC
Confidence 46788886 5889999999999999877766555 46788999999999998765
No 86
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=96.63 E-value=0.0024 Score=49.75 Aligned_cols=32 Identities=9% Similarity=0.255 Sum_probs=29.3
Q ss_pred CCCCceEEEEeCCHHHHHHHHHHCCcEEeeec
Q 032603 22 NPKDNHISFQCENMAIVERRLKEMKIDYVKSR 53 (137)
Q Consensus 22 np~~~HIAF~VedId~v~~rLke~GI~~~~~~ 53 (137)
.++..||||.|+|+++++++|+++|+++...+
T Consensus 81 G~Gv~HIAf~vdDI~~~~~~L~~~Gv~~l~~P 112 (191)
T cd07250 81 GAGVQHIALATDDIFATVAALRARGVEFLPIP 112 (191)
T ss_pred CCceeEEEEECCCHHHHHHHHHHcCCeeccCc
Confidence 46889999999999999999999999998764
No 87
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=96.00 E-value=0.014 Score=49.23 Aligned_cols=34 Identities=15% Similarity=0.143 Sum_probs=30.2
Q ss_pred CCCCCceEEEEeCCHHHHHHHHHHCCcEEeeecc
Q 032603 21 INPKDNHISFQCENMAIVERRLKEMKIDYVKSRV 54 (137)
Q Consensus 21 inp~~~HIAF~VedId~v~~rLke~GI~~~~~~~ 54 (137)
..++..|+||.|+|+++++++++++|+++...+.
T Consensus 69 hg~gv~~iaf~V~Dv~~a~~~l~~~Ga~~v~~p~ 102 (353)
T TIGR01263 69 HGDGVKDVAFRVDDAAAAFEAAVERGAEPVQAPV 102 (353)
T ss_pred CCCceEEEEEEECCHHHHHHHHHHCCCEeccCCc
Confidence 4578899999999999999999999999987653
No 88
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.80 E-value=0.079 Score=40.20 Aligned_cols=58 Identities=14% Similarity=-0.004 Sum_probs=46.7
Q ss_pred CCCCceEEEEeCCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEeec
Q 032603 22 NPKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCD 80 (137)
Q Consensus 22 np~~~HIAF~VedId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~~ 80 (137)
++..--+-+.++|++++++++.+.|+++..+. ....||.+.-.+.||.|+.+-|....
T Consensus 75 ~~~s~~l~~~~~d~da~f~~a~~aGa~v~mpl-~~~fwG~r~G~v~D~fGv~W~l~~~~ 132 (136)
T COG2764 75 GGTSLSLDLYVEDVDAVFERAAAAGATVVMPL-EDTFWGDRYGQVTDPFGVVWMLNTPV 132 (136)
T ss_pred CCeeEEEEEEehHHHHHHHHHHhcCCeEEecc-hhcCcccceEEEECCCCCEEEEecCc
Confidence 33444667788899999999999998888765 34457789999999999999997654
No 89
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=95.79 E-value=0.061 Score=38.27 Aligned_cols=57 Identities=18% Similarity=0.370 Sum_probs=41.6
Q ss_pred CCceEEEEeCCHHHHHHHHHHCCcEEeeeccccC----------CceEEEEEEEcCCC-CEEEEEeec
Q 032603 24 KDNHISFQCENMAIVERRLKEMKIDYVKSRVEEG----------GINVDQLFFHDPDG-SMIEICNCD 80 (137)
Q Consensus 24 ~~~HIAF~VedId~v~~rLke~GI~~~~~~~~~~----------g~g~r~vFf~DPDG-n~IEI~e~~ 80 (137)
+.+|++|.|.|+++..+..++.|.++.......+ +.+.+..++..|+| ..||+.++.
T Consensus 3 ~i~Hi~i~v~Dl~~s~~FY~~LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~iel~~~~ 70 (142)
T cd08353 3 RMDNVGIVVRDLEAAIAFFLELGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPDGHSRLELSKFH 70 (142)
T ss_pred eeeeEEEEeCCHHHHHHHHHHcCCEEccccccChHHHHHhcCCCCceEEEEEEeCCCCCceEEEEEec
Confidence 5789999999999999988889988765431110 11256677777766 579999864
No 90
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=95.60 E-value=0.013 Score=49.54 Aligned_cols=58 Identities=16% Similarity=0.348 Sum_probs=43.5
Q ss_pred CCCCceEEEEeCCHHHHHHHHHHCCcEEeeeccc--c---CCc------------eEEEEEEEcCCCCEEEEEee
Q 032603 22 NPKDNHISFQCENMAIVERRLKEMKIDYVKSRVE--E---GGI------------NVDQLFFHDPDGSMIEICNC 79 (137)
Q Consensus 22 np~~~HIAF~VedId~v~~rLke~GI~~~~~~~~--~---~g~------------g~r~vFf~DPDGn~IEI~e~ 79 (137)
.++..||||.|+|+++++++|+++|+++...+.. + ... ....+|=.|.+|+++.|.+.
T Consensus 236 g~Gv~HiAf~vdDi~~~~~~l~~~Gv~~l~~P~~yY~~l~~r~~~~~~~~~~~l~~~~iL~D~d~~g~llqift~ 310 (353)
T TIGR01263 236 GAGVQHIALNTDDIVRTVRALRARGVEFLDTPDTYYDLLGERLGGHVKEDLDTLRELNILIDGDEDGYLLQIFTK 310 (353)
T ss_pred CCCccEEEEEcCCHHHHHHHHHHcCCccCcCCHHHHHHHHHHhcccccchHHHHHHCCEEEecCCCceEEEEecc
Confidence 4689999999999999999999999999875410 0 000 01245778889988888765
No 91
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=95.52 E-value=0.16 Score=34.28 Aligned_cols=60 Identities=12% Similarity=0.115 Sum_probs=42.2
Q ss_pred CCceEEEEeCCHHHHHHHHHH-CCcEEeeeccccCCceEEEEEEEcCCCCEEEEEeecCCCC
Q 032603 24 KDNHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVLPV 84 (137)
Q Consensus 24 ~~~HIAF~VedId~v~~rLke-~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~~~~p~ 84 (137)
+++|+++.|.|+++..+..++ .|..+........+. ...+.+..++|..+|+....+.+.
T Consensus 3 ~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~-~~~~~~~~~~~~~i~l~~~~~~~~ 63 (125)
T cd08352 3 GIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERG-SYKLDLLLNGGYQLELFSFPNPPE 63 (125)
T ss_pred ccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCC-cEEEEEecCCCcEEEEEEcCCCCC
Confidence 578999999999999999975 799887653222211 123445566788899987665543
No 92
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=94.90 E-value=0.25 Score=33.50 Aligned_cols=58 Identities=16% Similarity=0.260 Sum_probs=41.0
Q ss_pred CCceEEEEeCCHHHHHHHHHH-CCcEEeeeccccCCceEEEEEEEcC---CCCEEEEEeecC
Q 032603 24 KDNHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDP---DGSMIEICNCDV 81 (137)
Q Consensus 24 ~~~HIAF~VedId~v~~rLke-~GI~~~~~~~~~~g~g~r~vFf~DP---DGn~IEI~e~~~ 81 (137)
+++|+++.|+|+++..+..++ .|.+........++.+...+++.+. .|..+++.....
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~ 62 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPD 62 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCC
Confidence 468999999999999998876 5998775532111112355667665 677899987654
No 93
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=94.37 E-value=0.27 Score=36.85 Aligned_cols=58 Identities=14% Similarity=0.134 Sum_probs=42.3
Q ss_pred CCceEEEEeCCHHHHHHHHHH-CCcEEeeec---ccc--------------CCceEEEEEEEcCCCCEEEEEeecC
Q 032603 24 KDNHISFQCENMAIVERRLKE-MKIDYVKSR---VEE--------------GGINVDQLFFHDPDGSMIEICNCDV 81 (137)
Q Consensus 24 ~~~HIAF~VedId~v~~rLke-~GI~~~~~~---~~~--------------~g~g~r~vFf~DPDGn~IEI~e~~~ 81 (137)
+.+|+++.|.|+++.++.-++ .|.++..+. .+. .+.+.+.+|+..++|..||++++.+
T Consensus 4 ~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ieL~~~~~ 79 (162)
T TIGR03645 4 TFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDRIGVELFEFKN 79 (162)
T ss_pred eEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCCCcEEEEeccC
Confidence 578999999999999998876 698775321 000 0112567788878899999999865
No 94
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=93.72 E-value=0.37 Score=32.81 Aligned_cols=56 Identities=11% Similarity=0.068 Sum_probs=40.0
Q ss_pred CceEEEEeCCHHHHHHHHHH-CCcEEeeeccccCCceEEEEEEEcCCCCEEEEEeecC
Q 032603 25 DNHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDV 81 (137)
Q Consensus 25 ~~HIAF~VedId~v~~rLke-~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~~~ 81 (137)
++|++|.|+|++++.+...+ .|.+.........+.+.+..|+.. +|..++|.+...
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~~~~~ 57 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGL-GNVQIELIEPLD 57 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEc-CCEEEEEEEECC
Confidence 36999999999999999987 798887654321011235566664 788899997643
No 95
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=93.44 E-value=0.073 Score=46.80 Aligned_cols=58 Identities=14% Similarity=0.335 Sum_probs=44.3
Q ss_pred CCCCceEEEEeCCHHHHHHHHHHC----CcEEeeecc-------cc--CC---------c-eEEEEEEEcCCCCEEEEEe
Q 032603 22 NPKDNHISFQCENMAIVERRLKEM----KIDYVKSRV-------EE--GG---------I-NVDQLFFHDPDGSMIEICN 78 (137)
Q Consensus 22 np~~~HIAF~VedId~v~~rLke~----GI~~~~~~~-------~~--~g---------~-g~r~vFf~DPDGn~IEI~e 78 (137)
.++.+||||.|+||.+..++|+++ |+++...|. .. ++ + ....++=.|.+|+++.|.+
T Consensus 260 G~GIQHIAl~tdDI~~av~~Lra~~~~~Gv~fL~~Pp~~YYd~L~~R~~~~l~~e~~~~L~~~~ILvD~d~~G~LLQIFT 339 (398)
T PLN02875 260 GPGLQHLALKSDDIFGTLREMRARSHIGGFEFMPPPPPTYYKNLKKRVGDVLTEEQIKECEELGILVDKDDQGVLLQIFT 339 (398)
T ss_pred CCCeeEEEeecCCHHHHHHHHHhccccCCeecCCCChHHHHHHHHHHhccCCChhhHHHHHHcCEEEecCCCceEEEEec
Confidence 479999999999999999999999 999998441 00 10 0 1235677888899998886
Q ss_pred e
Q 032603 79 C 79 (137)
Q Consensus 79 ~ 79 (137)
.
T Consensus 340 k 340 (398)
T PLN02875 340 K 340 (398)
T ss_pred c
Confidence 5
No 96
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=93.42 E-value=0.68 Score=31.34 Aligned_cols=56 Identities=13% Similarity=0.168 Sum_probs=38.5
Q ss_pred CCceEEEEeCCHHHHHHHHHH-CCcEEeeec-cccCCceEEEEEEEcCCCCEEEEEeecC
Q 032603 24 KDNHISFQCENMAIVERRLKE-MKIDYVKSR-VEEGGINVDQLFFHDPDGSMIEICNCDV 81 (137)
Q Consensus 24 ~~~HIAF~VedId~v~~rLke-~GI~~~~~~-~~~~g~g~r~vFf~DPDGn~IEI~e~~~ 81 (137)
+++|+++.|+|+++..+..++ .|.+..... .+..+ ....|+.-.+|..+|+++...
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~ 58 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKG--FESYFLSFDDGARLELMTRPD 58 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCC--ceEEEEecCCCcEEEEEcCcc
Confidence 368999999999999988877 588765332 12223 244556545788999987544
No 97
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=93.21 E-value=0.95 Score=29.52 Aligned_cols=54 Identities=7% Similarity=0.041 Sum_probs=37.9
Q ss_pred CceEEEEeCCHHHHHHHHH-HCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEeecCC
Q 032603 25 DNHISFQCENMAIVERRLK-EMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVL 82 (137)
Q Consensus 25 ~~HIAF~VedId~v~~rLk-e~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~~~~ 82 (137)
++|+++.|.|+++..+... -.|.+....... .. ...|+..+++..++|......
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~-~~---~~~~~~~~~~~~i~l~~~~~~ 55 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPF-LF---PGAWLYAGDGPQLHLIEEDPP 55 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCC-CC---CceEEEeCCCcEEEEEecCCC
Confidence 4799999999999998886 568876654321 11 345666666668899876543
No 98
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=93.20 E-value=0.14 Score=38.62 Aligned_cols=54 Identities=13% Similarity=0.245 Sum_probs=31.4
Q ss_pred CceEEEEeCCHHHHHHHH-HHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEeec
Q 032603 25 DNHISFQCENMAIVERRL-KEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCD 80 (137)
Q Consensus 25 ~~HIAF~VedId~v~~rL-ke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~~ 80 (137)
++|+.+.|+|+++..+++ +..|+.+....... ++|+....+.=+|| .||+...+
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~-~~GT~N~li~f~~~-YlEli~i~ 55 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHP-GWGTANALIPFGDG-YLELIAID 55 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-T-TT-EEEEEEE-SSS-EEEEEEES
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCC-CCccEEEEEeeCCc-eEEEEEeC
Confidence 479999999999999999 88899999766433 33444444444788 89999864
No 99
>PRK10148 hypothetical protein; Provisional
Probab=93.01 E-value=0.49 Score=35.55 Aligned_cols=57 Identities=11% Similarity=-0.109 Sum_probs=41.9
Q ss_pred CceEEEEeCCHHH---HHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEeecCCC
Q 032603 25 DNHISFQCENMAI---VERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVLP 83 (137)
Q Consensus 25 ~~HIAF~VedId~---v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~~~~p 83 (137)
.-++++.++|.++ ++++|. .|.++..+. .+..++.+...+.||-|+.+.|.....-|
T Consensus 86 ~~~l~l~~~d~ee~~~~~~aLa-~gg~v~mpl-~~~~wg~~~g~v~D~fGi~W~l~~~~~~~ 145 (147)
T PRK10148 86 GFTLVLDTQDVEEGKRWFDNLA-ANGKIEMAW-QETFWAHGFGKVTDKFGVPWMINVVKQQP 145 (147)
T ss_pred eEEEEEECCCHHHHHHHHHHhh-CCCEEEecc-hhcchhhccEEEECCCCCEEEEEecCCCC
Confidence 3577777778665 778885 677877665 33456678999999999999998765444
No 100
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=92.23 E-value=1.1 Score=29.81 Aligned_cols=52 Identities=10% Similarity=0.107 Sum_probs=36.8
Q ss_pred eEEEEeCCHHHHHHHHHH-CCcEEeeeccccCCceEEEEEEEcCCC--CEEEEEeec
Q 032603 27 HISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDPDG--SMIEICNCD 80 (137)
Q Consensus 27 HIAF~VedId~v~~rLke-~GI~~~~~~~~~~g~g~r~vFf~DPDG--n~IEI~e~~ 80 (137)
|+++.|.|+++..+..++ .|.++........+ ...+++.++++ ..+++....
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~ 55 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGGG--FRWVTVAPPGSPETSLVLAPPA 55 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCCC--cEEEEEeCCCCCeeEEEEeCCC
Confidence 899999999999998887 89998865432223 35666777765 456665443
No 101
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=92.09 E-value=0.26 Score=43.04 Aligned_cols=50 Identities=14% Similarity=0.070 Sum_probs=38.0
Q ss_pred CceEEEEeCC---HHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEe
Q 032603 25 DNHISFQCEN---MAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 78 (137)
Q Consensus 25 ~~HIAF~Ved---Id~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e 78 (137)
---+||.+++ +|++.++..+.|-+....+. +.|+ .-=|.||||+.+||.-
T Consensus 301 evLl~Ls~~Sre~VD~lv~~A~aaGG~~~~~~~-D~Gf---~rsf~D~DGH~WEi~~ 353 (357)
T PRK01037 301 TTTLSLELECEHDFVRFLRRWEMLGGELGEQAD-GHFP---LRLVFDLDGHIWVVSC 353 (357)
T ss_pred eEEEEeccCCHHHHHHHHHHHHHcCCCCCCCcc-cccC---cceeECCCCCEEEEEE
Confidence 3478899985 88889999999986655443 3343 5558999999999984
No 102
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=92.01 E-value=0.79 Score=31.01 Aligned_cols=42 Identities=14% Similarity=0.266 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEE
Q 032603 34 NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEIC 77 (137)
Q Consensus 34 dId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~ 77 (137)
+.+++.+.|++.|+.+..-...++| ...+...|.||..+||.
T Consensus 30 ~~~~~~~~l~~~G~~v~~ve~~~~g--~yev~~~~~dG~~~ev~ 71 (83)
T PF13670_consen 30 SIEQAVAKLEAQGYQVREVEFDDDG--CYEVEARDKDGKKVEVY 71 (83)
T ss_pred CHHHHHHHHHhcCCceEEEEEcCCC--EEEEEEEECCCCEEEEE
Confidence 7899999999999966654443444 47889999999999996
No 103
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=91.58 E-value=1.1 Score=28.59 Aligned_cols=52 Identities=13% Similarity=0.240 Sum_probs=40.7
Q ss_pred eEEEEeCCHHHHHHHHHH-CCcEEeeeccccCCceEEEEEEEcCCCCEEEEEeecCC
Q 032603 27 HISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVL 82 (137)
Q Consensus 27 HIAF~VedId~v~~rLke-~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~~~~ 82 (137)
|+++.|.|+++..+.+.+ .|.+....... .. .+.+++.++ +..++|....+.
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~-~~--~~~~~~~~~-~~~i~l~~~~~~ 53 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGN-GG--AEFAVLGLG-GTRLELFEGDEP 53 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeecc-CC--EEEEEEecC-CceEEEecCCCC
Confidence 899999999999999998 89987766521 12 367778776 789999987653
No 104
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=91.56 E-value=1.7 Score=29.08 Aligned_cols=57 Identities=14% Similarity=0.205 Sum_probs=40.4
Q ss_pred CCceEEEEeCCHHHHHHHHHH-CCcEEeeecc-ccCCceEEEEEEEcCCCCEEEEEeecC
Q 032603 24 KDNHISFQCENMAIVERRLKE-MKIDYVKSRV-EEGGINVDQLFFHDPDGSMIEICNCDV 81 (137)
Q Consensus 24 ~~~HIAF~VedId~v~~rLke-~GI~~~~~~~-~~~g~g~r~vFf~DPDGn~IEI~e~~~ 81 (137)
+++|+++.|.|++++.+..++ .|.++..... ...+......++...++ .+++.....
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~ 59 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGEG-HIELFLNPS 59 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTSS-CEEEEEEES
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeeccccc-ceeeeeecc
Confidence 468999999999999988777 5999887764 22222245666666665 477776644
No 105
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=91.23 E-value=0.53 Score=39.71 Aligned_cols=50 Identities=14% Similarity=0.240 Sum_probs=38.7
Q ss_pred CCCCCCceEEEEeCCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEe
Q 032603 20 NINPKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 78 (137)
Q Consensus 20 ~inp~~~HIAF~VedId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e 78 (137)
++.+++.||.+.++++-...+.++..|- ..+| .-.+|+.||||+..++.+
T Consensus 93 elGndfg~i~I~s~dv~~~ve~v~~p~~-------~~~g--~~~~~v~dPdGykF~l~~ 142 (299)
T KOG2943|consen 93 ELGNDFGGITIASDDVFSKVEKVNAPGG-------KGSG--CGIAFVKDPDGYKFYLID 142 (299)
T ss_pred eccCCcccEEEeHHHHHHHHHHhcCcCC-------cccc--eEEEEEECCCCcEEEEec
Confidence 5677888999988888877777766543 1123 468999999999999997
No 106
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=90.73 E-value=2 Score=28.93 Aligned_cols=55 Identities=11% Similarity=0.173 Sum_probs=38.2
Q ss_pred CceEEEEeCCHHHHHHHHHHC-CcEEeeeccccCCceEEEEEEEcCC---CCEEEEEeec
Q 032603 25 DNHISFQCENMAIVERRLKEM-KIDYVKSRVEEGGINVDQLFFHDPD---GSMIEICNCD 80 (137)
Q Consensus 25 ~~HIAF~VedId~v~~rLke~-GI~~~~~~~~~~g~g~r~vFf~DPD---Gn~IEI~e~~ 80 (137)
+.|+++.|.|+++..+..++. |.+.........+ +...+|+..++ +..+|+....
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~l~~~~ 59 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEG-KFTLVFLGYPDEDSEGVLELTYNW 59 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCC-ceEEEEecCCCCCCccEEEEEecC
Confidence 469999999999999999875 9998765322211 13445666554 5789987643
No 107
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=90.52 E-value=1.6 Score=30.04 Aligned_cols=52 Identities=13% Similarity=0.200 Sum_probs=37.8
Q ss_pred CCceEEEEeCCHHHHHHHHHHC----CcEEeeeccccCCceEEEEEEEcCCCCEEEEEeecC
Q 032603 24 KDNHISFQCENMAIVERRLKEM----KIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDV 81 (137)
Q Consensus 24 ~~~HIAF~VedId~v~~rLke~----GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~~~ 81 (137)
+++|+.+.|.|+++..+...+. |.+..... . .+ ..|+...++..+++.+..+
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~-~-~~----~~~~~~~~~~~i~l~~~~~ 56 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEW-E-DG----RSWRAGDGGTYLVLQQADG 56 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEee-c-cC----ceEEecCCceEEEEEeccc
Confidence 4689999999999999888775 88877653 1 12 2344335678899987654
No 108
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=89.91 E-value=1.1 Score=33.77 Aligned_cols=60 Identities=13% Similarity=0.154 Sum_probs=37.1
Q ss_pred CCCCceEEEEeCCHHHHHHHHHHCCcEEeeeccccC-CceEEEEEEEcC----CCCEEEEEeecC
Q 032603 22 NPKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEG-GINVDQLFFHDP----DGSMIEICNCDV 81 (137)
Q Consensus 22 np~~~HIAF~VedId~v~~rLke~GI~~~~~~~~~~-g~g~r~vFf~DP----DGn~IEI~e~~~ 81 (137)
..++.++||+++|++++.++|++.|+.......+++ ...++.+|+.|+ .+..-+++++.+
T Consensus 75 ~~g~~~~~l~t~d~~~~~~~l~~~G~~~~~r~~~dG~~~~w~~~~~~~~~~p~~~~~Pf~i~~~~ 139 (175)
T PF13468_consen 75 GEGLYGWALRTDDIEAVAARLRAAGLDAGSRVRPDGGDLRWRLAFPEDGALPFGGLLPFFIQWET 139 (175)
T ss_dssp --EEEEEEEE-S-HHHHHHHHHTTT-EEEEEEEEEE-EEEEEEEEEE-SS---SS---EEEEESS
T ss_pred CCCeEEEEEecCCHHHHHHHHHhcCCCCCCcCcCCCCcceEEEEEeCCcccccCCCCcEEEEeCC
Confidence 457889999999999999999999997433322222 234678888885 367778887755
No 109
>PRK11478 putative lyase; Provisional
Probab=89.62 E-value=2 Score=29.59 Aligned_cols=56 Identities=11% Similarity=0.040 Sum_probs=35.8
Q ss_pred CCceEEEEeCCHHHHHHHHHH-CCcEEeeeccccCCceEEEEEEEcCCCCEEEEEeec
Q 032603 24 KDNHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCD 80 (137)
Q Consensus 24 ~~~HIAF~VedId~v~~rLke-~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~~ 80 (137)
+.+|+++.|+|+++..+..++ .|.++............. .++.-.++..+|+.+..
T Consensus 6 ~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~-~~~~~~~~~~l~l~~~~ 62 (129)
T PRK11478 6 QVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWK-GDLALNGQYVIELFSFP 62 (129)
T ss_pred eecEEEEEcCCHHHHHHHHHHHhCCEecccccccccccce-eeEecCCCcEEEEEEec
Confidence 578999999999999988865 698876432211110011 12222356789998754
No 110
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=88.95 E-value=2.5 Score=28.84 Aligned_cols=51 Identities=0% Similarity=0.068 Sum_probs=37.8
Q ss_pred CCceEEEEeCCHHHHHHHHHH-CCcEEeeeccccCCceEEEEEEEcCC-CCEEEEEeecC
Q 032603 24 KDNHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDPD-GSMIEICNCDV 81 (137)
Q Consensus 24 ~~~HIAF~VedId~v~~rLke-~GI~~~~~~~~~~g~g~r~vFf~DPD-Gn~IEI~e~~~ 81 (137)
+++|+++.|+|+++..+..++ .|.++.... + ..+++..++ +..+.+...+.
T Consensus 2 ~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~---~----~~~~l~~~~~~~~l~l~~~~~ 54 (125)
T cd07255 2 RIGAVTLRVADLERSLAFYQDVLGLEVLERT---D----STAVLGTGGKRPLLVLEEDPD 54 (125)
T ss_pred EEEEEEEEECCHHHHHHHHHhccCcEEEEcC---C----CEEEEecCCCeEEEEEEeCCC
Confidence 568999999999999998886 698887652 1 245566554 57788877654
No 111
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=86.80 E-value=0.5 Score=41.31 Aligned_cols=62 Identities=15% Similarity=0.209 Sum_probs=42.4
Q ss_pred CCCCceEEEEeCCHHHHHHHHHHCCcEEeeeccc--c------CC--------ceEEEEEEEcCCCCEEEEEeecCCCCc
Q 032603 22 NPKDNHISFQCENMAIVERRLKEMKIDYVKSRVE--E------GG--------INVDQLFFHDPDGSMIEICNCDVLPVV 85 (137)
Q Consensus 22 np~~~HIAF~VedId~v~~rLke~GI~~~~~~~~--~------~g--------~g~r~vFf~DPDGn~IEI~e~~~~p~~ 85 (137)
..++.||||.++||.++.++|++.|+++...+.. + ++ .....+|=.|++|. |+.+-=+.|++
T Consensus 243 G~GIQHIA~~T~dI~~tv~~lr~rG~~fl~ip~tYYd~~~~R~~~~~e~ld~Lr~~~IL~D~~~~~~--~lLQift~~~~ 320 (363)
T COG3185 243 GEGIQHIAFGTDDIYATVAALRERGVKFLPIPETYYDDLDARFPLHGEFLDALRELEILYDGDGGGG--ELLQIFTRTFI 320 (363)
T ss_pred CCcceEEEecccHHHHHHHHHHHcCCccCCCchhHHHHHhhcCCCChHHHHHHHhcCeEeecCCCCc--EEEEEeccccc
Confidence 3478999999999999999999999998874320 0 00 01456777888884 44443334443
No 112
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=86.56 E-value=3 Score=32.28 Aligned_cols=58 Identities=14% Similarity=0.084 Sum_probs=41.9
Q ss_pred CCceEEEEeC--CHHHHHHHHHH-CCcEEeeecc-ccCCceEEEEEEEcCCC-CEEEEEeecC
Q 032603 24 KDNHISFQCE--NMAIVERRLKE-MKIDYVKSRV-EEGGINVDQLFFHDPDG-SMIEICNCDV 81 (137)
Q Consensus 24 ~~~HIAF~Ve--dId~v~~rLke-~GI~~~~~~~-~~~g~g~r~vFf~DPDG-n~IEI~e~~~ 81 (137)
+++|+++.|+ |++++.+..++ .|.+...... +....+.+..++..|+| ..+|+.+..+
T Consensus 3 ~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~g~i~l~L~~~~~ 65 (191)
T cd07250 3 RIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPDGKIRIPLNEPAS 65 (191)
T ss_pred eeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCCCcEEEEEecCCC
Confidence 5789999999 99999998765 7998765432 22122367888888875 5678887554
No 113
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=85.99 E-value=4.8 Score=28.66 Aligned_cols=52 Identities=8% Similarity=0.049 Sum_probs=35.2
Q ss_pred CceEEEEeCCHHHHHHHHHH-CCcEEeeeccccCCceEEEEEEEcCCCCEEEEEeec
Q 032603 25 DNHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCD 80 (137)
Q Consensus 25 ~~HIAF~VedId~v~~rLke-~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~~ 80 (137)
++|++|.|.|+++..+..++ .|.+...... ..+ ....++. .++..+++....
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~-~~~--~~~~~~~-~g~~~l~l~~~~ 53 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHG-SED--KASYLLR-QGDINFVLNSPL 53 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecC-CCc--eEEEEEE-cCCEEEEEecCC
Confidence 47999999999999999988 8998876432 112 2334443 345567776543
No 114
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=85.86 E-value=3.8 Score=27.86 Aligned_cols=53 Identities=13% Similarity=0.276 Sum_probs=36.3
Q ss_pred CCceEEEEeCCHHHHHHHHHH-CCcEEeeec-cccCCceEEEEEEEcCCCCEEEEEee
Q 032603 24 KDNHISFQCENMAIVERRLKE-MKIDYVKSR-VEEGGINVDQLFFHDPDGSMIEICNC 79 (137)
Q Consensus 24 ~~~HIAF~VedId~v~~rLke-~GI~~~~~~-~~~~g~g~r~vFf~DPDGn~IEI~e~ 79 (137)
++.|+++.|.|+++..+..++ .|.+..... .+..+ ....|+. +++..+|+...
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~--~~~~~~~-~~~~~i~l~~~ 55 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQG--VKVVFIA-LGNTKVELLEP 55 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCC--cEEEEEe-cCCEEEEEEec
Confidence 468999999999999998875 698876432 12222 3444444 34678999864
No 115
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=84.20 E-value=6.5 Score=29.31 Aligned_cols=52 Identities=8% Similarity=0.042 Sum_probs=36.2
Q ss_pred CCceEEEEeCCHHHHHHHHHH-CCcEEeeeccccCCceEEEEEEEc-CCCCEEEEEeec
Q 032603 24 KDNHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHD-PDGSMIEICNCD 80 (137)
Q Consensus 24 ~~~HIAF~VedId~v~~rLke-~GI~~~~~~~~~~g~g~r~vFf~D-PDGn~IEI~e~~ 80 (137)
+++|+++.|+|+++..+...+ .|.++..... + ...++..+ .+|..|++.+..
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~---~--~~~~~~~~~~~~~~l~l~~~~ 54 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG---D--RVRLEEGGGGPGAVVDVLEEP 54 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC---C--EEEEEecCCCCCCEEEEEeCC
Confidence 468999999999999988866 4988775431 2 12222223 368899998753
No 116
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=83.67 E-value=8.6 Score=26.66 Aligned_cols=53 Identities=8% Similarity=0.142 Sum_probs=37.5
Q ss_pred CCceEEEEeCCHHHHHHHHHH-CCcEEeeeccccCCceEEEEEEEcC--CCCEEEEEeecC
Q 032603 24 KDNHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDP--DGSMIEICNCDV 81 (137)
Q Consensus 24 ~~~HIAF~VedId~v~~rLke-~GI~~~~~~~~~~g~g~r~vFf~DP--DGn~IEI~e~~~ 81 (137)
+++|+.+.|+|+++..+...+ .|.+..... + . ....|+..+ .+..++++..+.
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~-~-~---~~~~~~~~~~~~~~~l~l~~~~~ 56 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRG-P-L---GGLVFLSRDPDEHHQIALITGRP 56 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeec-c-C---CcEEEEEecCCCceEEEEEecCC
Confidence 468999999999999999887 798876543 1 1 135566544 356788876543
No 117
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=83.00 E-value=10 Score=29.61 Aligned_cols=32 Identities=6% Similarity=-0.024 Sum_probs=26.2
Q ss_pred CCCCceEEEEeCCHHHHHHHHH-HCCcEEeeec
Q 032603 22 NPKDNHISFQCENMAIVERRLK-EMKIDYVKSR 53 (137)
Q Consensus 22 np~~~HIAF~VedId~v~~rLk-e~GI~~~~~~ 53 (137)
+-+++|.+|.|.|+++.++... -.|.+.....
T Consensus 25 ~~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~ 57 (185)
T PLN03042 25 GYIMQQTMFRIKDPKASLDFYSRVLGMSLLKRL 57 (185)
T ss_pred CcEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEE
Confidence 4468999999999999998775 4799887664
No 118
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=82.58 E-value=4.1 Score=27.61 Aligned_cols=41 Identities=17% Similarity=0.312 Sum_probs=32.4
Q ss_pred HHHHHHHHHHCCcEEeeeccc-cCCceEEEEEEEcCCCCEEE
Q 032603 35 MAIVERRLKEMKIDYVKSRVE-EGGINVDQLFFHDPDGSMIE 75 (137)
Q Consensus 35 Id~v~~rLke~GI~~~~~~~~-~~g~g~r~vFf~DPDGn~IE 75 (137)
+..+.+-|.+.|+.+....+. .++.-...||+.|.+|+.|+
T Consensus 15 L~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~ 56 (72)
T cd04895 15 LLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLT 56 (72)
T ss_pred HHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCC
Confidence 677889999999999987653 33444789999999999763
No 119
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=82.08 E-value=18 Score=26.62 Aligned_cols=65 Identities=15% Similarity=0.231 Sum_probs=39.6
Q ss_pred CCceEEEEeCCHHHHHHHHH-HCCcEEeeec-cccC----------CceEEEEEEE---cCCCCEEEEEeecCCCCcccC
Q 032603 24 KDNHISFQCENMAIVERRLK-EMKIDYVKSR-VEEG----------GINVDQLFFH---DPDGSMIEICNCDVLPVVPLA 88 (137)
Q Consensus 24 ~~~HIAF~VedId~v~~rLk-e~GI~~~~~~-~~~~----------g~g~r~vFf~---DPDGn~IEI~e~~~~p~~pl~ 88 (137)
+..|+++.|.|+++.++-=. ..|.+..... .+++ + ....+|+. +..+..+|+..-......+.+
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~l~~~~~~~~~~lEL~~n~~~~~~~~g 80 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDG-KWSKTMIGYGPEDDHFVVELTYNYGIGDYELG 80 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCC-cEEEEEEecCCCCCccEEEeEecCCCCCCCCC
Confidence 46799999999999998774 4799876543 1211 1 01234443 356778999853222224554
Q ss_pred C
Q 032603 89 G 89 (137)
Q Consensus 89 ~ 89 (137)
.
T Consensus 81 ~ 81 (127)
T cd08358 81 N 81 (127)
T ss_pred C
Confidence 3
No 120
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=81.69 E-value=7.9 Score=29.38 Aligned_cols=57 Identities=16% Similarity=0.195 Sum_probs=39.7
Q ss_pred CCCCCceEEEEeCCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEee
Q 032603 21 INPKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNC 79 (137)
Q Consensus 21 inp~~~HIAF~VedId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~ 79 (137)
+.++..-++|+|+|.++++++-.++|.+....+...+. ...-=++-+.|.++-+++.
T Consensus 70 HG~sv~aiafrV~Da~~A~~rA~~~GA~~~~~~~~~~e--~~~paI~g~G~sl~yfVdr 126 (139)
T PF14696_consen 70 HGPSVCAIAFRVDDAAAAYERAVALGAEPVQEPTGPGE--LNIPAIRGIGGSLHYFVDR 126 (139)
T ss_dssp HSSEEEEEEEEES-HHHHHHHHHHTT--EEEEEEETT---BEEEEEE-CCC-EEEEEE-
T ss_pred cCCEEEEEEEEeCCHHHHHHHHHHcCCcCcccCCCCCc--EeeeeEEccCCCEEEEEec
Confidence 46788899999999999999999999998887644332 4555667777777777764
No 121
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=80.90 E-value=10 Score=26.83 Aligned_cols=56 Identities=20% Similarity=0.169 Sum_probs=34.4
Q ss_pred CCceEEEEeCCHHHHHHHHHH-CCcEEeeeccccCCceEEEEEEEcCCCCEEEEEeec
Q 032603 24 KDNHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCD 80 (137)
Q Consensus 24 ~~~HIAF~VedId~v~~rLke-~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~~ 80 (137)
+++|+++.|+|+++..+..++ .|.+................|+. -.|.++++.+..
T Consensus 4 ~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~-~~~~~i~l~~~~ 60 (131)
T cd08364 4 GLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFL-IGGLWIAIMEGD 60 (131)
T ss_pred cEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEE-cCCeEEEEecCC
Confidence 678999999999999988876 78876543211110001122232 236788887543
No 122
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=80.32 E-value=13 Score=26.23 Aligned_cols=50 Identities=8% Similarity=0.142 Sum_probs=34.8
Q ss_pred CCceEEEEeCCHHHHHHHHHH-CCcEEeeeccccCCceEEEEEEEcCC---CCEEEEEee
Q 032603 24 KDNHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDPD---GSMIEICNC 79 (137)
Q Consensus 24 ~~~HIAF~VedId~v~~rLke-~GI~~~~~~~~~~g~g~r~vFf~DPD---Gn~IEI~e~ 79 (137)
+++|++|.|.|+++..+..++ .|.+...... . ...|+...+ +..+++...
T Consensus 3 ~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~---~---~~~~~~~~~~~~~~~i~l~~~ 56 (134)
T cd08360 3 RLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFK---G---RGAFLRAAGGGDHHNLFLIKT 56 (134)
T ss_pred eeeEEEEEcCCHHHHHHHHHHhcCCEEEEEec---C---cEEEEECCCCCCCcEEEEecC
Confidence 578999999999999998866 5998765431 1 234665543 357777643
No 123
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=79.24 E-value=12 Score=25.34 Aligned_cols=28 Identities=11% Similarity=0.325 Sum_probs=24.3
Q ss_pred CCceEEEEeCCHHHHHHHHHHCCcEEee
Q 032603 24 KDNHISFQCENMAIVERRLKEMKIDYVK 51 (137)
Q Consensus 24 ~~~HIAF~VedId~v~~rLke~GI~~~~ 51 (137)
++.|++|.|.|+++..+..+..|.+...
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~~lG~~~~~ 29 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYEAFGLDVRE 29 (112)
T ss_pred ceeEEEEecCCHHHHHHHHHHhCCcEEe
Confidence 5689999999999999888878988764
No 124
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=78.95 E-value=17 Score=26.61 Aligned_cols=58 Identities=7% Similarity=0.094 Sum_probs=37.2
Q ss_pred CCCCceEEEEeCCHHHHHHHHHH-CCcEEeeecccc-C-CceEEEEEEE-cCCCCEEEEEee
Q 032603 22 NPKDNHISFQCENMAIVERRLKE-MKIDYVKSRVEE-G-GINVDQLFFH-DPDGSMIEICNC 79 (137)
Q Consensus 22 np~~~HIAF~VedId~v~~rLke-~GI~~~~~~~~~-~-g~g~r~vFf~-DPDGn~IEI~e~ 79 (137)
..+++|+++.|+|+++..+..++ .|.++....... . +-+...+|++ +.++..+++...
T Consensus 7 ~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~ 68 (154)
T cd07237 7 DQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGRHHSLALAEG 68 (154)
T ss_pred CCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCCCCCEEEEcC
Confidence 34789999999999999988876 798876532111 0 1012455554 455566776543
No 125
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=78.23 E-value=14 Score=24.49 Aligned_cols=48 Identities=2% Similarity=0.123 Sum_probs=34.3
Q ss_pred CCceEEEEeCCHHHHHHHHHH-CCcEEeeeccccCCceEEEEEEEcC--CCCEEEEEe
Q 032603 24 KDNHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDP--DGSMIEICN 78 (137)
Q Consensus 24 ~~~HIAF~VedId~v~~rLke-~GI~~~~~~~~~~g~g~r~vFf~DP--DGn~IEI~e 78 (137)
+++|+.|.|+|+++..+..++ .|.+..... + ...|+..+ +...+.+..
T Consensus 2 ~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~----~---~~~~~~~~~~~~~~~~~~~ 52 (117)
T cd07240 2 RIAYAELEVPDLERALEFYTDVLGLTVLDRD----A---GSVYLRCSEDDHHSLVLTE 52 (117)
T ss_pred ceeEEEEecCCHHHHHHHHHhccCcEEEeec----C---CeEEEecCCCCcEEEEEEe
Confidence 578999999999999999988 799887643 1 24566655 233455543
No 126
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=78.16 E-value=10 Score=27.80 Aligned_cols=46 Identities=11% Similarity=0.100 Sum_probs=31.0
Q ss_pred CCceEEEEeCCHHHHHHHHH-HCCcEEeeeccc--cCCceEEEEEEEcCCC
Q 032603 24 KDNHISFQCENMAIVERRLK-EMKIDYVKSRVE--EGGINVDQLFFHDPDG 71 (137)
Q Consensus 24 ~~~HIAF~VedId~v~~rLk-e~GI~~~~~~~~--~~g~g~r~vFf~DPDG 71 (137)
+++|+++.|.|+++.++..+ -.|.++...... .++ .+..|++-.+|
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~--~~~~~l~~~~~ 49 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGN--PVAAFLRLDRG 49 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCC--cEEEEEecCCC
Confidence 46899999999999988774 479887654322 122 35666664444
No 127
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=78.09 E-value=14 Score=24.64 Aligned_cols=51 Identities=10% Similarity=0.109 Sum_probs=34.6
Q ss_pred ceEEEEeCCHHHHHHHHHH-CCcEEeeeccccCCceEEEEEEEcCCCCEEEEEeec
Q 032603 26 NHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCD 80 (137)
Q Consensus 26 ~HIAF~VedId~v~~rLke-~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~~ 80 (137)
+|++|.|.|+++..+...+ .|.++..... +.+ ..+++...++..+.++...
T Consensus 2 ~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~ 53 (114)
T cd07247 2 VWFELPTTDPERAKAFYGAVFGWTFEDMGD-GGG---DYAVFSTGGGAVGGLMKAP 53 (114)
T ss_pred EEEEeeCCCHHHHHHHHHhccCceeeeccC-CCC---ceEEEEeCCccEEEEecCC
Confidence 6999999999999998876 4988875442 112 3455555544556665543
No 128
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=77.04 E-value=16 Score=25.93 Aligned_cols=50 Identities=16% Similarity=0.205 Sum_probs=35.6
Q ss_pred CCceEEEEeCCHHHHHHHHHH-CCcEEeeeccccCCceEEEEEEEcCCCCEEEEEeecC
Q 032603 24 KDNHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDV 81 (137)
Q Consensus 24 ~~~HIAF~VedId~v~~rLke-~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~~~ 81 (137)
+++|+++.|+|+++..+...+ .|.++.... + ..+|+.- +|.++.+...+.
T Consensus 4 ~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~----~---~~~~~~~-~g~~l~l~~~~~ 54 (139)
T PRK04101 4 GINHICFSVSNLEKSIEFYEKVLGAKLLVKG----R---KTAYFDL-NGLWIALNEEKD 54 (139)
T ss_pred cEEEEEEEecCHHHHHHHHHhccCCEEEeec----C---eeEEEec-CCeEEEeeccCC
Confidence 578999999999999998865 688776421 1 3455544 578888865543
No 129
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=76.95 E-value=10 Score=25.72 Aligned_cols=49 Identities=10% Similarity=0.089 Sum_probs=32.6
Q ss_pred CceEEEEeCCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEe
Q 032603 25 DNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 78 (137)
Q Consensus 25 ~~HIAF~VedId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e 78 (137)
.+|+++.|+|+++..+.-+..|.+..... ++ ...+.+.-++|..+.+..
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~LGf~~~~~~---~~--~~~~~~~~~~~~~l~l~~ 49 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRRLGFDFPEEA---DD--EPHVEAVLPGGVRLAWDT 49 (122)
T ss_pred CceEEEEeccHHHHHHHHHHhCceecCCc---CC--CCcEEEEeCCCEEEEEEc
Confidence 37999999999999988877898764322 11 123445556666666544
No 130
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=76.92 E-value=5.1 Score=24.54 Aligned_cols=26 Identities=15% Similarity=0.262 Sum_probs=23.2
Q ss_pred CCceEEEEeCCHHHHHHHHHHCCcEE
Q 032603 24 KDNHISFQCENMAIVERRLKEMKIDY 49 (137)
Q Consensus 24 ~~~HIAF~VedId~v~~rLke~GI~~ 49 (137)
+...+.|++++.+.+.+.|+++|+++
T Consensus 39 ~~~~v~~~ve~~~~~~~~L~~~G~~v 64 (65)
T cd04882 39 GKALLIFRTEDIEKAIEVLQERGVEL 64 (65)
T ss_pred CeEEEEEEeCCHHHHHHHHHHCCceE
Confidence 45688999999999999999999876
No 131
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=76.43 E-value=20 Score=24.99 Aligned_cols=53 Identities=9% Similarity=0.164 Sum_probs=35.3
Q ss_pred ceEEEEeCCHHHHHHHHHH-CCcEEeeeccccCCceEEEEEEEcCC-CCEEEEEeec
Q 032603 26 NHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDPD-GSMIEICNCD 80 (137)
Q Consensus 26 ~HIAF~VedId~v~~rLke-~GI~~~~~~~~~~g~g~r~vFf~DPD-Gn~IEI~e~~ 80 (137)
.|++|.|.|++++.+...+ .|.+........ +. ....|+...+ +..+++...+
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~-~~-~~~~~~~~~~~~~~l~~~~~~ 55 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDP-GV-DAAAFLRCDEDHHDLALFPGP 55 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccC-Cc-eeEEEEEcCCCcceEEEEcCC
Confidence 4999999999999998876 799876543211 21 2455666433 4467776644
No 132
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=76.39 E-value=21 Score=24.19 Aligned_cols=50 Identities=8% Similarity=0.071 Sum_probs=34.7
Q ss_pred CceEEEEeCCHHHHHHHHHH----CCcEEeeeccccCCceEEEEEEEcC-CCCEEEEEeec
Q 032603 25 DNHISFQCENMAIVERRLKE----MKIDYVKSRVEEGGINVDQLFFHDP-DGSMIEICNCD 80 (137)
Q Consensus 25 ~~HIAF~VedId~v~~rLke----~GI~~~~~~~~~~g~g~r~vFf~DP-DGn~IEI~e~~ 80 (137)
+.|+++.|.|+++..+..++ +|.+..... . + ..++|..+ .+..+.+....
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~-~--~---~~~~~~~~~~~~~~~l~~~~ 55 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMED-G--P---GAVGYGKGGGGPDFWVTKPF 55 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeec-C--C---ceeEeccCCCCceEEEeccc
Confidence 36999999999999988877 588876443 1 1 23555555 35678887643
No 133
>PF14133 DUF4300: Domain of unknown function (DUF4300)
Probab=76.37 E-value=6.3 Score=32.83 Aligned_cols=38 Identities=21% Similarity=0.397 Sum_probs=29.1
Q ss_pred HHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEE
Q 032603 35 MAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEIC 77 (137)
Q Consensus 35 Id~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~ 77 (137)
.+.+.+.++++|+.+.. ..+..-++|++|||++.+=|-
T Consensus 150 ~~~i~k~wk~rgi~F~~-----~k~slISV~~h~~d~~~lFvG 187 (250)
T PF14133_consen 150 AEKIQKYWKERGIKFNN-----DKASLISVFLHDPDDNSLFVG 187 (250)
T ss_pred HHHHHHHHHHcCceeCC-----CceEEEEEEEEcCCCCeEEee
Confidence 67888999999999921 123367999999999976543
No 134
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=76.26 E-value=4.8 Score=35.25 Aligned_cols=65 Identities=18% Similarity=0.260 Sum_probs=46.6
Q ss_pred CCCceEEEEeCCHHHHHHHHHHCCcEEeeecccc---CCceEEEEEEE---cCCCCEEEEEeecC--CCCc-ccC
Q 032603 23 PKDNHISFQCENMAIVERRLKEMKIDYVKSRVEE---GGINVDQLFFH---DPDGSMIEICNCDV--LPVV-PLA 88 (137)
Q Consensus 23 p~~~HIAF~VedId~v~~rLke~GI~~~~~~~~~---~g~g~r~vFf~---DPDGn~IEI~e~~~--~p~~-pl~ 88 (137)
-+..-+||+|+|.+++.+.+.+.|+++..+++.. .|. ++.+-++ |-.-.++|-..+.. ||.+ |..
T Consensus 90 dgvkdvafeVeD~da~~~~~va~Ga~v~~~p~~~~da~G~-v~~A~l~tygd~thtlvEr~~y~g~FLPGF~~v~ 163 (381)
T KOG0638|consen 90 DGVKDVAFEVEDADAIFQEAVANGAKVVRPPWEESDAQGA-VTYAVLKTYGDTTHTLVERKGYKGPFLPGFEPVS 163 (381)
T ss_pred cchhceEEEecchHHHHHHHHHcCCcccCCcceeeccCCc-EEEEEEecccchhhhhhhhccccccCCCCcccCc
Confidence 3567899999999999999999999999987542 233 5666666 44555666665543 6665 443
No 135
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=75.53 E-value=22 Score=26.91 Aligned_cols=57 Identities=19% Similarity=0.166 Sum_probs=30.8
Q ss_pred CCCCceEEEEeCCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEeecCC
Q 032603 22 NPKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVL 82 (137)
Q Consensus 22 np~~~HIAF~VedId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~~~~ 82 (137)
-.+.+++-+.|++-.++..-| .+|..+..--....| +.+=..+|+|..+.|+..+++
T Consensus 61 ~KKl~~ivIkv~~~~EIe~LL-ar~~~~~~l~kg~~g---yAfe~vSPEgd~~llhaEdd~ 117 (125)
T PF14506_consen 61 PKKLNRIVIKVPNPKEIEALL-ARGAQYDRLYKGKNG---YAFEAVSPEGDRFLLHAEDDI 117 (125)
T ss_dssp S-SEEEEEEEESSHHHHHHHH-HC-S--SEEEE-SSS---EEEEEE-TT--EEEEE--S-G
T ss_pred cceeeEEEEEcCCHHHHHHHH-hcccccceeEEcCCc---eEEEEECCCCCEEEEEEcCCH
Confidence 336899999999866655544 445554432222234 566667999999999977653
No 136
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=74.98 E-value=17 Score=24.74 Aligned_cols=40 Identities=15% Similarity=0.277 Sum_probs=31.1
Q ss_pred HHHHHHHHHHCCcEEeeecccc-CCceEEEEEEEcCCCCEE
Q 032603 35 MAIVERRLKEMKIDYVKSRVEE-GGINVDQLFFHDPDGSMI 74 (137)
Q Consensus 35 Id~v~~rLke~GI~~~~~~~~~-~g~g~r~vFf~DPDGn~I 74 (137)
+-.+...|.++|+.+....+.. +..-...||+.|.+|..+
T Consensus 15 L~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl 55 (75)
T cd04897 15 LFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTL 55 (75)
T ss_pred HHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCcc
Confidence 6678889999999999876533 223367899999999865
No 137
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=74.35 E-value=15 Score=27.17 Aligned_cols=45 Identities=7% Similarity=0.183 Sum_probs=30.8
Q ss_pred CCceEEEEeCCHHHHHHHHHH-CCcEEeeeccccCCceEEEEEEEcC
Q 032603 24 KDNHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDP 69 (137)
Q Consensus 24 ~~~HIAF~VedId~v~~rLke-~GI~~~~~~~~~~g~g~r~vFf~DP 69 (137)
+++|+++.|.|+++..+..++ .|.+.........+. ...+|+...
T Consensus 3 ~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~-~~~~~l~~~ 48 (161)
T cd07256 3 RLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGT-TWAAWLHRK 48 (161)
T ss_pred eEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCc-EEEEEEecC
Confidence 578999999999999988877 798876433221221 244566543
No 138
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=73.91 E-value=17 Score=25.05 Aligned_cols=49 Identities=12% Similarity=0.145 Sum_probs=34.9
Q ss_pred CCceEEEEeCCHHHHHHHHHH-CCcEEeeeccccCCceEEEEEEEcCCCCEEEEEee
Q 032603 24 KDNHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNC 79 (137)
Q Consensus 24 ~~~HIAF~VedId~v~~rLke-~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~ 79 (137)
+.+|+++.|.|+++..+..++ .|.+..... + ...++...+|..+++...
T Consensus 4 ~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~----~---~~~~~~~~~~~~l~~~~~ 53 (123)
T cd08351 4 TLNHTIVPARDREASAEFYAEILGLPWAKPF----G---PFAVVKLDNGVSLDFAQP 53 (123)
T ss_pred eEeEEEEEcCCHHHHHHHHHHhcCCEeeecc----C---CEEEEEcCCCcEEEEecC
Confidence 568999999999999888865 488776521 2 234445456788887764
No 139
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=73.46 E-value=15 Score=26.70 Aligned_cols=30 Identities=13% Similarity=0.207 Sum_probs=25.3
Q ss_pred CCceEEEEeCCHHHHHHHHHH-CCcEEeeec
Q 032603 24 KDNHISFQCENMAIVERRLKE-MKIDYVKSR 53 (137)
Q Consensus 24 ~~~HIAF~VedId~v~~rLke-~GI~~~~~~ 53 (137)
+++|+++.|+|+++..+..++ .|.++....
T Consensus 6 ~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~ 36 (143)
T cd07243 6 RLDHCLLTGEDIAETTRFFTDVLDFYLAERV 36 (143)
T ss_pred eeCEEEEecCCHHHHHHHHHHhcCCEEEEEE
Confidence 578999999999999998866 799876553
No 140
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=73.26 E-value=23 Score=26.41 Aligned_cols=30 Identities=7% Similarity=0.184 Sum_probs=25.4
Q ss_pred CCceEEEEeCCHHHHHHHHHH-CCcEEeeec
Q 032603 24 KDNHISFQCENMAIVERRLKE-MKIDYVKSR 53 (137)
Q Consensus 24 ~~~HIAF~VedId~v~~rLke-~GI~~~~~~ 53 (137)
+++|++|.|.|+++..+...+ .|.+.....
T Consensus 6 ~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~ 36 (166)
T cd09014 6 RLDHVNLLASDVDANRDFMEEVLGFRLREQI 36 (166)
T ss_pred eeeeEEEEcCCHHHHHHHHHHccCCEEEEEE
Confidence 678999999999999998875 799876543
No 141
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=73.00 E-value=7.2 Score=33.18 Aligned_cols=29 Identities=24% Similarity=0.166 Sum_probs=22.4
Q ss_pred CCCCceEEEEe------CCHHHHHHHHHHCCcEEe
Q 032603 22 NPKDNHISFQC------ENMAIVERRLKEMKIDYV 50 (137)
Q Consensus 22 np~~~HIAF~V------edId~v~~rLke~GI~~~ 50 (137)
.+..||+...| .||+++.+.|+++|++.-
T Consensus 182 G~~~NH~T~~v~~l~~~~dI~~v~~~l~~~G~~~n 216 (302)
T PF07063_consen 182 GYHINHFTPRVNRLKKFLDIDAVNAFLKERGIPMN 216 (302)
T ss_dssp TCS-SEEEEETTT-TT-S-HHHHHHHHHHTT--B-
T ss_pred ccccceeeceeecccccccHHHHHHHHHHcCCCcc
Confidence 45789999999 999999999999999988
No 142
>PLN02367 lactoylglutathione lyase
Probab=70.89 E-value=25 Score=28.96 Aligned_cols=30 Identities=3% Similarity=-0.016 Sum_probs=25.0
Q ss_pred CCceEEEEeCCHHHHHHHHH-HCCcEEeeec
Q 032603 24 KDNHISFQCENMAIVERRLK-EMKIDYVKSR 53 (137)
Q Consensus 24 ~~~HIAF~VedId~v~~rLk-e~GI~~~~~~ 53 (137)
.++|.+++|.|+++.++.-. -.|.+.....
T Consensus 75 ~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~ 105 (233)
T PLN02367 75 IMQQTMYRIKDPKASLDFYSRVLGMSLLKRL 105 (233)
T ss_pred EEEEEEEEeCCHHHHHHHHHHhcCCEEeEEE
Confidence 58899999999999888774 5799877654
No 143
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=69.84 E-value=11 Score=31.87 Aligned_cols=58 Identities=17% Similarity=0.288 Sum_probs=40.5
Q ss_pred CCceEEEEe--CCHHHHHHHHHHCCcEEeeecc---ccCCceEEEEEEEcCCCCEEEEEeecC
Q 032603 24 KDNHISFQC--ENMAIVERRLKEMKIDYVKSRV---EEGGINVDQLFFHDPDGSMIEICNCDV 81 (137)
Q Consensus 24 ~~~HIAF~V--edId~v~~rLke~GI~~~~~~~---~~~g~g~r~vFf~DPDGn~IEI~e~~~ 81 (137)
++.-++|.+ +++..+.+.+|..+-++..+.. ..++..+.-+-+.||||+.|-++.-..
T Consensus 210 g~griafaip~d~~~~l~e~iK~~n~~i~~~lttl~tPgka~vqvvil~DPDgheicfVdde~ 272 (299)
T KOG2943|consen 210 GFGRIAFAIPTDDLPKLQEAIKSANGTILTPLTTLDTPGKATVQVVILADPDGHEICFVDDEG 272 (299)
T ss_pred cceeEEEeccccccccHHHHHHHhccccccceeeccCCCcceeEEEEEECCCCceEEEeccHH
Confidence 556667766 5788888888888666554432 123566788889999999887775443
No 144
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=69.10 E-value=8.8 Score=24.89 Aligned_cols=30 Identities=10% Similarity=0.214 Sum_probs=26.2
Q ss_pred CCceEEEEeCCHHHHHHHHHH-CCcEEeeec
Q 032603 24 KDNHISFQCENMAIVERRLKE-MKIDYVKSR 53 (137)
Q Consensus 24 ~~~HIAF~VedId~v~~rLke-~GI~~~~~~ 53 (137)
+..|+++.|.|+++..+..++ .|.++....
T Consensus 2 ~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~ 32 (138)
T COG0346 2 GIHHVTLAVPDLEASIDFYTDVLGLRLVKDT 32 (138)
T ss_pred ceEEEEEeeCCHhHhHHHHHhhcCCeeeeec
Confidence 568999999999999998887 899988764
No 145
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=69.06 E-value=22 Score=25.15 Aligned_cols=49 Identities=14% Similarity=0.171 Sum_probs=33.6
Q ss_pred CceEEEEeCCHHHHHHHHHH-CCcEEeeeccccCCceEEEEEEEcCCCCEEEEEeecC
Q 032603 25 DNHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDV 81 (137)
Q Consensus 25 ~~HIAF~VedId~v~~rLke-~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~~~ 81 (137)
++|+++.|.|+++..+...+ .|.+..... . ..+||.- .|.++++.....
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~----~---~~~~~~~-~~~~l~l~~~~~ 50 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLG----E---KTAYFTI-GGTWLALNEEPD 50 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccC----C---ccceEee-CceEEEEEccCC
Confidence 47999999999999988877 487765321 1 1234443 477888866443
No 146
>PRK06724 hypothetical protein; Provisional
Probab=68.15 E-value=24 Score=25.36 Aligned_cols=28 Identities=14% Similarity=0.067 Sum_probs=20.7
Q ss_pred CCCceEEEEeCCHHHHHHHHHH----CCcEEe
Q 032603 23 PKDNHISFQCENMAIVERRLKE----MKIDYV 50 (137)
Q Consensus 23 p~~~HIAF~VedId~v~~rLke----~GI~~~ 50 (137)
.+++|+++.|+|+++..+.-++ .|.+..
T Consensus 6 ~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~ 37 (128)
T PRK06724 6 AGIHHIEFWVANLEESISFYDMLFSIIGWRKL 37 (128)
T ss_pred cccCEEEEEeCCHHHHHHHHHHHHhhCCcEEe
Confidence 4689999999999987755544 466543
No 147
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=67.98 E-value=9.2 Score=26.12 Aligned_cols=29 Identities=14% Similarity=0.350 Sum_probs=25.1
Q ss_pred CCceEEEEeCCHHHHHHHHHH-CCcEEeee
Q 032603 24 KDNHISFQCENMAIVERRLKE-MKIDYVKS 52 (137)
Q Consensus 24 ~~~HIAF~VedId~v~~rLke-~GI~~~~~ 52 (137)
+++|++|.|.|+++..+..++ .|.++...
T Consensus 4 ~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~ 33 (122)
T cd07265 4 RPGHVQLRVLDLEEAIKHYREVLGLDEVGR 33 (122)
T ss_pred eEeEEEEEeCCHHHHHHHHHhccCCEeeee
Confidence 678999999999999998876 79987654
No 148
>PF03975 CheD: CheD chemotactic sensory transduction; InterPro: IPR005659 CheD deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs). CheD-mediated MCP deamidation is required for productive communication of the conformational signals of the chemoreceptors to the cheA kinase []. CheC is a CheY-P phosphatase (CheY controls flagellar rotation and is activated by phosphorylation). The activity of CheC is enhanced by its interaction with CheD, forming a CheC-CheD heterodimer. It is suggested that CheC exerts its effect on MCP methylation in Bacillus subtilis by controlling the binding of CheD to the MCPs [].; GO: 0050568 protein-glutamine glutaminase activity, 0006935 chemotaxis; PDB: 2F9Z_D.
Probab=66.61 E-value=12 Score=27.02 Aligned_cols=38 Identities=26% Similarity=0.302 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCC
Q 032603 33 ENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGS 72 (137)
Q Consensus 33 edId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn 72 (137)
.|++.+.+.|++.||++....+ +|...|.++|.=.+|.
T Consensus 64 rNv~~a~~~L~~~gi~I~a~dv--GG~~~R~v~f~~~tG~ 101 (114)
T PF03975_consen 64 RNVEAARELLAEEGIPIVAEDV--GGNFGRKVRFDPATGE 101 (114)
T ss_dssp HHHHHHHHHHHHTT--EEEEEE---SSS-EEEEEETTTTE
T ss_pred HHHHHHHHHHHHCCCcEEEeeC--CCCCCcEEEEEcCCCE
Confidence 4899999999999999998765 3444588888766665
No 149
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=65.60 E-value=11 Score=25.59 Aligned_cols=29 Identities=3% Similarity=0.147 Sum_probs=25.1
Q ss_pred CCceEEEEeCCHHHHHHHHHH-CCcEEeee
Q 032603 24 KDNHISFQCENMAIVERRLKE-MKIDYVKS 52 (137)
Q Consensus 24 ~~~HIAF~VedId~v~~rLke-~GI~~~~~ 52 (137)
+..|+.+.|+|+++..+..++ .|.++...
T Consensus 4 ~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~ 33 (121)
T cd07266 4 RLGHVELRVTDLEKSREFYVDVLGLVETEE 33 (121)
T ss_pred eeeEEEEEcCCHHHHHHHHHhccCCEEecc
Confidence 578999999999999999987 79887654
No 150
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=65.38 E-value=12 Score=24.93 Aligned_cols=51 Identities=10% Similarity=0.149 Sum_probs=35.1
Q ss_pred CCceEEEEeCCHHHHHHHHHH-CCcEEeeeccccCCceEEEEEEEcCCCCEEEEEeec
Q 032603 24 KDNHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCD 80 (137)
Q Consensus 24 ~~~HIAF~VedId~v~~rLke-~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~~ 80 (137)
+++|+.+.|+|+++..+..++ .|.+....... .+ .+.+.- ++..+++....
T Consensus 3 ~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~-~~----~~~~~~-~~~~~~l~~~~ 54 (125)
T cd07253 3 RIDHVVLTVADIEATLDFYTRVLGMEVVRFGEE-VG----RKALRF-GSQKINLHPVG 54 (125)
T ss_pred ccceEEEEecCHHHHHHHHHHHhCceeeccccc-CC----ceEEEe-CCEEEEEecCC
Confidence 678999999999999999888 79888764321 11 222332 23678887643
No 151
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=64.93 E-value=11 Score=25.73 Aligned_cols=29 Identities=17% Similarity=0.360 Sum_probs=24.6
Q ss_pred CCceEEEEeCCHHHHHHHHHHCCcEEeee
Q 032603 24 KDNHISFQCENMAIVERRLKEMKIDYVKS 52 (137)
Q Consensus 24 ~~~HIAF~VedId~v~~rLke~GI~~~~~ 52 (137)
++.|+.+.|+|+++..+.-.+.|.+....
T Consensus 3 ~l~hv~l~v~Dl~~s~~FY~~lGl~~~~~ 31 (113)
T cd07267 3 DIAHVRFEHPDLDKAERFLTDFGLEVAAR 31 (113)
T ss_pred EEEEEEEccCCHHHHHHHHHHcCCEEEEe
Confidence 56899999999999998888889877543
No 152
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=63.73 E-value=43 Score=29.65 Aligned_cols=59 Identities=8% Similarity=-0.119 Sum_probs=41.7
Q ss_pred CCCCCceEEEEeCCHHHHHHHHHHCCcEEeeeccccCC---c-eEEEEEEEcCCCCEEEEEee
Q 032603 21 INPKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGG---I-NVDQLFFHDPDGSMIEICNC 79 (137)
Q Consensus 21 inp~~~HIAF~VedId~v~~rLke~GI~~~~~~~~~~g---~-g~r~vFf~DPDGn~IEI~e~ 79 (137)
+.++..-+||+|+|.++++++..++|.+....+...+. . .....=+.-+.|..+=+++.
T Consensus 89 HG~gV~dvaf~V~Da~~a~~~A~~~Ga~~~~~~~~~~d~~~~g~~~~~~I~~~G~~~h~lVdr 151 (398)
T PLN02875 89 HGLAVRAVGVLVEDAEEAFRTSVAHGARPVLEPTELGDEASGGKAVIAEVELYGDVVLRYVSY 151 (398)
T ss_pred cCCeeeEEEEEECCHHHHHHHHHHCCCeeccCCccccccccCceEEEEEEEccCCcEEEEEcc
Confidence 34677889999999999999999999998876542110 0 13344456667777776664
No 153
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=61.52 E-value=49 Score=22.59 Aligned_cols=49 Identities=8% Similarity=0.114 Sum_probs=32.9
Q ss_pred CCceEEEEeCCHHHHHHHHHH-CCcEEeeeccccCCceEEEEEEEcC-CCCEEEEEe
Q 032603 24 KDNHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDP-DGSMIEICN 78 (137)
Q Consensus 24 ~~~HIAF~VedId~v~~rLke-~GI~~~~~~~~~~g~g~r~vFf~DP-DGn~IEI~e 78 (137)
+..|+++.|.|+++..+..++ .|.+..... . . ..+|+..+ .+..+.+..
T Consensus 2 ~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~-~-~----~~~~~~~~~~~~~~~l~~ 52 (120)
T cd07252 2 SLGYLGVESSDLDAWRRFATDVLGLQVGDRP-E-D----GALYLRMDDRAWRIAVHP 52 (120)
T ss_pred cccEEEEEeCCHHHHHHHHHhccCceeccCC-C-C----CeEEEEccCCceEEEEEe
Confidence 568999999999999998877 699876542 1 1 23455543 344555543
No 154
>PRK13490 chemoreceptor glutamine deamidase CheD; Provisional
Probab=60.91 E-value=16 Score=28.36 Aligned_cols=44 Identities=27% Similarity=0.477 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEee
Q 032603 33 ENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNC 79 (137)
Q Consensus 33 edId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~ 79 (137)
.|++.+.+.|++.||++....+ +|...|.++|.-.+|. +.+...
T Consensus 112 rNv~~a~~~L~~~gI~i~a~dv--GG~~gR~i~f~~~tG~-v~vk~~ 155 (162)
T PRK13490 112 RNGKAVKKKLKELSIPILAEDI--GGNKGRTMIFDTSDGK-VYIKTV 155 (162)
T ss_pred HHHHHHHHHHHHcCCcEEEEEC--CCCCCcEEEEECCCCE-EEEEEc
Confidence 4899999999999999998765 3444588877666665 455433
No 155
>PRK13494 chemoreceptor glutamine deamidase CheD; Provisional
Probab=60.67 E-value=16 Score=28.50 Aligned_cols=45 Identities=13% Similarity=0.140 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEeec
Q 032603 33 ENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCD 80 (137)
Q Consensus 33 edId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~~ 80 (137)
.|++.+.+.|++.||++....+ +|...|.++|.--+|. +.+...+
T Consensus 114 rNv~~a~~~L~~~gI~i~a~Dv--GG~~gR~i~f~~~tG~-v~vk~~~ 158 (163)
T PRK13494 114 ENSEFAVNTLNKYGIPILAKDF--DQSKSRKIFVFPENFK-VIVEYPD 158 (163)
T ss_pred HHHHHHHHHHHHcCCcEEEEeC--CCCCCcEEEEECCCCE-EEEEECC
Confidence 4899999999999999998765 3344588888766665 4554443
No 156
>PRK13495 chemoreceptor glutamine deamidase CheD; Provisional
Probab=59.57 E-value=17 Score=28.14 Aligned_cols=43 Identities=21% Similarity=0.394 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEe
Q 032603 33 ENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 78 (137)
Q Consensus 33 edId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e 78 (137)
.|++.+.+.|++.||++....+ +|...|.++|.-.+|. +.+..
T Consensus 105 rNi~~a~~~L~~~gI~i~a~dv--GG~~gR~i~f~~~tG~-v~vk~ 147 (159)
T PRK13495 105 RNVEAVKKHLKDFGIKLVAEDT--GGNRARSIEYNIETGK-LLVRK 147 (159)
T ss_pred HHHHHHHHHHHHcCCcEEEEeC--CCCCCcEEEEECCCCE-EEEEE
Confidence 4899999999999999998765 3333588888766665 44443
No 157
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=59.00 E-value=17 Score=24.53 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=22.1
Q ss_pred ceEEEEeCC----HHHHHHHHHHCCcEEee
Q 032603 26 NHISFQCEN----MAIVERRLKEMKIDYVK 51 (137)
Q Consensus 26 ~HIAF~Ved----Id~v~~rLke~GI~~~~ 51 (137)
-.+.++|++ ++.+.+.|+++|+++..
T Consensus 42 v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~ 71 (85)
T cd04906 42 IFVGVSVANGAEELAELLEDLKSAGYEVVD 71 (85)
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHCCCCeEE
Confidence 456678888 99999999999999875
No 158
>PRK13498 chemoreceptor glutamine deamidase CheD; Provisional
Probab=58.88 E-value=18 Score=28.22 Aligned_cols=45 Identities=9% Similarity=0.118 Sum_probs=32.5
Q ss_pred EeCCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEe
Q 032603 31 QCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 78 (137)
Q Consensus 31 ~VedId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e 78 (137)
--.|++.+.+.|++.||++....+ +|...|.++|.--+|. +.+..
T Consensus 113 G~rNi~~a~~~L~~~gi~i~a~Dv--GG~~gR~i~f~~~tG~-v~vk~ 157 (167)
T PRK13498 113 ADKNIHAALALAEQNGLHLKAQDL--GSTGHRSIIFDLWNGN-VWVRH 157 (167)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEeC--CCCCCcEEEEECCCCE-EEEEE
Confidence 335899999999999999998765 3333578877665665 44443
No 159
>PRK13488 chemoreceptor glutamine deamidase CheD; Provisional
Probab=58.11 E-value=19 Score=27.77 Aligned_cols=42 Identities=24% Similarity=0.315 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEE
Q 032603 33 ENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEIC 77 (137)
Q Consensus 33 edId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~ 77 (137)
.|++.+.+.|++.||++....+ +|...|.++|.--+|. +.+.
T Consensus 107 rNi~~a~~~L~~~gi~i~a~dv--GG~~gR~i~f~~~tG~-v~vk 148 (157)
T PRK13488 107 RNIESAKETLKKLGIRIVAEDV--GGDYGRTVKFDLKTGK-VIVR 148 (157)
T ss_pred HHHHHHHHHHHHCCCcEEEEEc--CCCCCcEEEEECCCCE-EEEE
Confidence 5899999999999999998765 3333578888766665 4443
No 160
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=56.59 E-value=53 Score=21.73 Aligned_cols=46 Identities=11% Similarity=0.181 Sum_probs=32.9
Q ss_pred EEEEeCCHHHHHHHHHHC-CcEEeeeccccCCceEEEEEEEcCCCCEEEEEeec
Q 032603 28 ISFQCENMAIVERRLKEM-KIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCD 80 (137)
Q Consensus 28 IAF~VedId~v~~rLke~-GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~~ 80 (137)
+.|.|+|+++..+..++. |.+..... .. ...++.. +|..+++.+.+
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~~--~~----~~~~~~~-~~~~~~l~~~~ 48 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSADS--ND----GVAFFQL-GGLVLALFPRE 48 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceecccC--CC----ceEEEEc-CCeEEEEecch
Confidence 678999999999988776 88876541 11 2345554 78889988654
No 161
>PRK13497 chemoreceptor glutamine deamidase CheD; Provisional
Probab=56.58 E-value=21 Score=28.35 Aligned_cols=39 Identities=26% Similarity=0.302 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCE
Q 032603 33 ENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSM 73 (137)
Q Consensus 33 edId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~ 73 (137)
.|++.+.+.|++.||++....+ +|...|.++|.--+|..
T Consensus 112 rNi~~a~~~L~~~gI~i~a~Dv--GG~~gR~v~f~~~tG~v 150 (184)
T PRK13497 112 QNAAFAMQFLRDEGIPVVGSST--GGEHGRKLEYWPVSGRA 150 (184)
T ss_pred HHHHHHHHHHHHcCCcEEEEeC--CCCCCcEEEEECCCCeE
Confidence 4899999999999999998765 34445888887777765
No 162
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=56.41 E-value=29 Score=27.74 Aligned_cols=51 Identities=18% Similarity=0.307 Sum_probs=36.4
Q ss_pred CCCCceEEEEeCCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCC
Q 032603 22 NPKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGS 72 (137)
Q Consensus 22 np~~~HIAF~VedId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn 72 (137)
+.+..+|.+.-+||..+.+.++..||.|.-.....++.+...+||.=.|--
T Consensus 31 g~~l~~i~i~~~~lk~F~k~AkKyGV~yav~kdk~~~~~~~~V~FkA~Da~ 81 (204)
T PF12687_consen 31 GKGLKNIEITDEDLKEFKKEAKKYGVDYAVKKDKSTGPGKYDVFFKAKDAD 81 (204)
T ss_pred CCCceEEecCHhhHHHHHHHHHHcCCceEEeeccCCCCCcEEEEEEcCcHH
Confidence 335677778778999999999999999986553333323567777755543
No 163
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=55.64 E-value=10 Score=33.30 Aligned_cols=59 Identities=17% Similarity=0.226 Sum_probs=44.1
Q ss_pred CCCCCceEEEEeCCHHHHHHHHHHCCcEEeeeccc-------cCC---------c----eEEEEEEEcCCCCEEEEEee
Q 032603 21 INPKDNHISFQCENMAIVERRLKEMKIDYVKSRVE-------EGG---------I----NVDQLFFHDPDGSMIEICNC 79 (137)
Q Consensus 21 inp~~~HIAF~VedId~v~~rLke~GI~~~~~~~~-------~~g---------~----g~r~vFf~DPDGn~IEI~e~ 79 (137)
..++..|||+-++||=...+.|+++|.++...|.. .-+ + ....+.=.|-.|+++.|.+.
T Consensus 259 gG~GvQHiaL~tedIi~Ai~~lr~rG~eFLs~Ps~YYqnl~erl~~~~~~vked~~~l~el~ILvD~De~gyLLQIFTK 337 (381)
T KOG0638|consen 259 GGAGVQHIALNTEDIIEAIRGLRARGGEFLSPPSTYYQNLKERLSTSIRKVKEDIKLLEELGILVDFDENGYLLQIFTK 337 (381)
T ss_pred CCCceeeeeecchHHHHHHHHHHhcCCccccCCHHHHHhHHHHhhhhhhhhhccHHHHHHcCeEEecCCCcEEeeeecc
Confidence 45588999999999999999999999999865421 000 0 02356667889999999863
No 164
>PRK13491 chemoreceptor glutamine deamidase CheD; Provisional
Probab=55.16 E-value=22 Score=28.78 Aligned_cols=39 Identities=23% Similarity=0.385 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCE
Q 032603 33 ENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSM 73 (137)
Q Consensus 33 edId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~ 73 (137)
.|++.+.+.|++.||++....+ +|...|.++|.--+|..
T Consensus 115 rNie~a~~~L~~~GI~ivaeDv--GG~~gRkI~f~~~tG~v 153 (199)
T PRK13491 115 ANAAFARRYLRDEGIRCTAHSL--GGNRARRIRFWPKTGRV 153 (199)
T ss_pred HHHHHHHHHHHHcCCcEEEEeC--CCCCCcEEEEECCCCEE
Confidence 4899999999999999998765 33445888887666664
No 165
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=54.88 E-value=23 Score=25.73 Aligned_cols=50 Identities=14% Similarity=0.170 Sum_probs=33.3
Q ss_pred CCCceEEEEeCCHHHHHHHHHH-CCcEEeeeccccCCceEEEEEEEcC-CCCEEEEEe
Q 032603 23 PKDNHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDP-DGSMIEICN 78 (137)
Q Consensus 23 p~~~HIAF~VedId~v~~rLke-~GI~~~~~~~~~~g~g~r~vFf~DP-DGn~IEI~e 78 (137)
.+++|+++.|+|+++..+..++ .|.+..... +. ...|+.-. .+..+.+..
T Consensus 3 ~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~---~~---~~~~l~~~~~~~~~~l~~ 54 (144)
T cd07239 3 VKISHVVLNSPDVDKTVAFYEDVLGFRVSDWL---GD---QMAFLRCNSDHHSIAIAR 54 (144)
T ss_pred ceeeEEEEECCCHHHHHHHHHhcCCCEEEEee---CC---eEEEEECCCCcceEEEcc
Confidence 3678999999999999998865 688775332 11 23455543 345566643
No 166
>PRK13493 chemoreceptor glutamine deamidase CheD; Provisional
Probab=54.63 E-value=22 Score=28.94 Aligned_cols=44 Identities=23% Similarity=0.344 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEee
Q 032603 33 ENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNC 79 (137)
Q Consensus 33 edId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~ 79 (137)
.|++.+.+.|++.||++....+ +|...|.++|.--+|. +.+...
T Consensus 139 rNi~~a~~~L~~~gI~Iva~Dv--GG~~gRki~f~~~tG~-v~vk~~ 182 (213)
T PRK13493 139 KNVEFVLEYAKREKLNVVAQDL--GGAQPRKLLFDPQTGQ-AWVKRI 182 (213)
T ss_pred HHHHHHHHHHHHcCCcEEEEeC--CCCCCcEEEEECCCCE-EEEEEc
Confidence 4899999999999999998765 3343578877655554 556543
No 167
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=53.19 E-value=44 Score=23.23 Aligned_cols=59 Identities=25% Similarity=0.372 Sum_probs=41.2
Q ss_pred EeC-CHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEe-ecCCCCcccCC
Q 032603 31 QCE-NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN-CDVLPVVPLAG 89 (137)
Q Consensus 31 ~Ve-dId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e-~~~~p~~pl~~ 89 (137)
.|+ ++..+.+.|+++|+++..-.....-.+...+-+..-|.|+.=+.. ..+.|||=..|
T Consensus 5 AVE~~Ls~v~~~L~~~GyeVv~l~~~~~~~~~daiVvtG~~~n~mg~~d~~~~~pVInA~G 65 (80)
T PF03698_consen 5 AVEEGLSNVKEALREKGYEVVDLENEQDLQNVDAIVVTGQDTNMMGIQDTSTKVPVINASG 65 (80)
T ss_pred EecCCchHHHHHHHHCCCEEEecCCccccCCcCEEEEECCCcccccccccccCceEEecCC
Confidence 455 689999999999999997543221123678889999999877754 34466664443
No 168
>PRK13487 chemoreceptor glutamine deamidase CheD; Provisional
Probab=53.05 E-value=25 Score=28.34 Aligned_cols=44 Identities=18% Similarity=0.258 Sum_probs=32.3
Q ss_pred EeCCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEE
Q 032603 31 QCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEIC 77 (137)
Q Consensus 31 ~VedId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~ 77 (137)
.-.|++.+.+.|++.||++....+ +|...|.++|.--+|. +.+.
T Consensus 125 G~rNi~~a~~~L~~~gI~iva~Dv--GG~~gR~v~f~~~tG~-v~vk 168 (201)
T PRK13487 125 GERNAEFVRDYLQTERIPIVAEDL--LDIYPRKVYFFPTTGK-VLVK 168 (201)
T ss_pred hHHHHHHHHHHHHHcCCcEEEEEC--CCCCCcEEEEECCCCE-EEEE
Confidence 335899999999999999998765 3333578887755555 4444
No 169
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=52.88 E-value=33 Score=23.46 Aligned_cols=29 Identities=10% Similarity=0.101 Sum_probs=24.1
Q ss_pred CCceEEEEeCCHHHHHHHHHH-CCcEEeee
Q 032603 24 KDNHISFQCENMAIVERRLKE-MKIDYVKS 52 (137)
Q Consensus 24 ~~~HIAF~VedId~v~~rLke-~GI~~~~~ 52 (137)
+++|+.+.|.|+++..+..++ .|.+....
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~ 30 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVR 30 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEe
Confidence 468999999999999988876 68877643
No 170
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=52.52 E-value=54 Score=23.62 Aligned_cols=54 Identities=13% Similarity=0.179 Sum_probs=35.2
Q ss_pred CCceEEEEeCCHHHHHHHHHHCCcEEeeecccc------CCc-e------------EEEEEEEcCCCCEEEEE
Q 032603 24 KDNHISFQCENMAIVERRLKEMKIDYVKSRVEE------GGI-N------------VDQLFFHDPDGSMIEIC 77 (137)
Q Consensus 24 ~~~HIAF~VedId~v~~rLke~GI~~~~~~~~~------~g~-g------------~r~vFf~DPDGn~IEI~ 77 (137)
+..-+++..++.+++.+.+++.|+.+.--..+. -|. + .+..|+.||+|..+...
T Consensus 64 ~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~ 136 (154)
T PRK09437 64 GVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVF 136 (154)
T ss_pred CCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEE
Confidence 456677888888888888888877653211010 010 0 14679999999988886
No 171
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=52.24 E-value=27 Score=23.75 Aligned_cols=48 Identities=4% Similarity=0.151 Sum_probs=33.1
Q ss_pred CCceEEEEeCCHHHHHHHHHHC-CcEEeeeccccCCceEEEEEEEc-C--CCCEEEEEe
Q 032603 24 KDNHISFQCENMAIVERRLKEM-KIDYVKSRVEEGGINVDQLFFHD-P--DGSMIEICN 78 (137)
Q Consensus 24 ~~~HIAF~VedId~v~~rLke~-GI~~~~~~~~~~g~g~r~vFf~D-P--DGn~IEI~e 78 (137)
+++|++|.|.|+++..+...+. |.+..... + ..+|+.- . ....+++..
T Consensus 6 ~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~---~----~~~~l~~~~~~~~~~~~l~~ 57 (121)
T cd09013 6 HLAHVELLTPKPEESLWFFTDVLGLEETGRE---G----QSVYLRAWGDYEHHSLKLTE 57 (121)
T ss_pred EeeEEEEEeCCHHHHHHHHHhCcCCEEEeec---C----CeEEEEeccCCCccEEEEee
Confidence 6789999999999999988774 98776542 1 2455642 2 345666643
No 172
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=52.19 E-value=30 Score=21.76 Aligned_cols=25 Identities=12% Similarity=0.089 Sum_probs=20.6
Q ss_pred ceEEEEeCCHHHHHHHHHHCCcEEe
Q 032603 26 NHISFQCENMAIVERRLKEMKIDYV 50 (137)
Q Consensus 26 ~HIAF~VedId~v~~rLke~GI~~~ 50 (137)
..+-+.++|.+++.+.|+++|+++.
T Consensus 41 ~~~rl~~~~~~~~~~~L~~~G~~v~ 65 (66)
T cd04908 41 GILRLIVSDPDKAKEALKEAGFAVK 65 (66)
T ss_pred CEEEEEECCHHHHHHHHHHCCCEEE
Confidence 4556677899999999999999864
No 173
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=51.73 E-value=31 Score=21.51 Aligned_cols=27 Identities=11% Similarity=0.249 Sum_probs=22.1
Q ss_pred CCceEEEEeC--CHHHHHHHHHHCCcEEe
Q 032603 24 KDNHISFQCE--NMAIVERRLKEMKIDYV 50 (137)
Q Consensus 24 ~~~HIAF~Ve--dId~v~~rLke~GI~~~ 50 (137)
+...+.|+++ +.+.+.+.|+++|+++.
T Consensus 41 ~~~~v~i~v~~~~~~~~~~~L~~~G~~v~ 69 (72)
T cd04883 41 DNKILVFRVQTMNPRPIIEDLRRAGYEVL 69 (72)
T ss_pred CeEEEEEEEecCCHHHHHHHHHHCCCeee
Confidence 4456777776 88899999999999876
No 174
>PRK03094 hypothetical protein; Provisional
Probab=51.51 E-value=62 Score=22.61 Aligned_cols=58 Identities=19% Similarity=0.256 Sum_probs=40.9
Q ss_pred EeC-CHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEee-cCCCCcccC
Q 032603 31 QCE-NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNC-DVLPVVPLA 88 (137)
Q Consensus 31 ~Ve-dId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~-~~~p~~pl~ 88 (137)
.|+ ++..+.+.|+++|++++.-..+..-.+...+-+..-|.|+.=+... .+.|||=..
T Consensus 5 aVE~~Ls~i~~~L~~~GYeVv~l~~~~~~~~~Da~VitG~d~n~mgi~d~~t~~pVI~A~ 64 (80)
T PRK03094 5 GVEQSLTDVQQALKQKGYEVVQLRSEQDAQGCDCCVVTGQDSNVMGIADTSTKGSVITAS 64 (80)
T ss_pred EeecCcHHHHHHHHHCCCEEEecCcccccCCcCEEEEeCCCcceecccccccCCcEEEcC
Confidence 354 6899999999999999864322111226788999999999888754 346666443
No 175
>PRK13489 chemoreceptor glutamine deamidase CheD; Provisional
Probab=51.23 E-value=27 Score=28.94 Aligned_cols=44 Identities=18% Similarity=0.250 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEee
Q 032603 33 ENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNC 79 (137)
Q Consensus 33 edId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~ 79 (137)
.|++.+.+.|++.||++....+ +|...|.++|.--+|. +.|...
T Consensus 125 RNieaa~~~L~~~gI~IvaeDv--GG~~gRkV~f~~~TG~-v~Vk~~ 168 (233)
T PRK13489 125 RNADFVRRYLALERIRITAEDL--QGVHPRKVAFMPRTGR-AMVKKL 168 (233)
T ss_pred HHHHHHHHHHHHcCCcEEEEeC--CCCCCcEEEEECCCCE-EEEEEc
Confidence 4899999999999999998765 3343577877655555 555443
No 176
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=50.64 E-value=45 Score=29.70 Aligned_cols=58 Identities=24% Similarity=0.343 Sum_probs=35.1
Q ss_pred CCCCC-CceEEEEeCCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEeecCCCCcc
Q 032603 20 NINPK-DNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVLPVVP 86 (137)
Q Consensus 20 ~inp~-~~HIAF~VedId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~~~~p~~p 86 (137)
+|.|+ -.-+...+.|-.=-.+||...=.+.. ... .--+||.||+|++...- -.. ||||
T Consensus 339 pI~PGETr~v~v~aqdA~WEveRL~~L~~Dpd------Srf-gGLLff~d~~G~R~~~~-I~g-pvIP 397 (399)
T TIGR03079 339 AIAPGETVEVKMEAKDALWEVQRLMALLGDPE------SRF-GGLLMFWDPEGNRIINS-IAG-PVIP 397 (399)
T ss_pred CcCCCcceEEEEEEehhhhHHHHHHHHhcCcc------ccc-ceEEEEEcCCCCEEehh-ccC-cccc
Confidence 56665 44666777776655677755322211 111 14799999999987553 332 8887
No 177
>PF06923 GutM: Glucitol operon activator protein (GutM); InterPro: IPR009693 This family consists of several glucitol operon activator (GutM) proteins. Expression of the glucitol (gut) operon in Escherichia coli is regulated by an unusual, complex system, which consists of an activator (encoded by the gutM gene) and a repressor (encoded by the gutR gene) in addition to the cAMP-CRP complex (CRP, cAMP receptor protein). Synthesis of the mRNA, which initiates at the promoter specific to the gutR gene, occurs within the gutM gene. Expressional control of the gut operon appears to occur as a consequence of the antagonistic action of the products of the autogenously regulated gutM and gutR genes [].
Probab=50.10 E-value=29 Score=25.19 Aligned_cols=56 Identities=18% Similarity=0.121 Sum_probs=37.4
Q ss_pred EEeCCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEeecCCCCc
Q 032603 30 FQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVLPVV 85 (137)
Q Consensus 30 F~VedId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~~~~p~~ 85 (137)
|++.++.+.+.+|+..|-.-.......-+.|+--++..|++|..+|-.....+-|+
T Consensus 21 ~Qik~f~~~~~~l~~~G~V~iG~~~g~f~~g~Ivlla~D~~~~I~~~~~M~G~TVF 76 (109)
T PF06923_consen 21 FQIKNFNKAYKELRKKGRVGIGRSKGRFRPGVIVLLAVDEDGRIVDAEIMKGITVF 76 (109)
T ss_pred HHHHHHHHHHHHHHhCCcEEEeeecCcccCCeEEEEEECCCCcEEEEEEEeceEEE
Confidence 35567888999999999333322211112346788889999999998766654444
No 178
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=49.89 E-value=32 Score=23.04 Aligned_cols=25 Identities=4% Similarity=0.154 Sum_probs=21.8
Q ss_pred eEEEEeCCHHHHHHHHHH-CCcEEee
Q 032603 27 HISFQCENMAIVERRLKE-MKIDYVK 51 (137)
Q Consensus 27 HIAF~VedId~v~~rLke-~GI~~~~ 51 (137)
|++|.|+|+++..+.-++ .|.+...
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~ 27 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGR 27 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEee
Confidence 999999999999988876 6988754
No 179
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=49.24 E-value=68 Score=20.49 Aligned_cols=54 Identities=19% Similarity=0.180 Sum_probs=35.0
Q ss_pred CCCceEEEEeCC--HHHHHHHHHHCCcEEeeeccc------c-CCceEEEEEEEcCCCCEEEE
Q 032603 23 PKDNHISFQCEN--MAIVERRLKEMKIDYVKSRVE------E-GGINVDQLFFHDPDGSMIEI 76 (137)
Q Consensus 23 p~~~HIAF~Ved--Id~v~~rLke~GI~~~~~~~~------~-~g~g~r~vFf~DPDGn~IEI 76 (137)
+...-+++.++. .+.+.+.+++.+..+.-.... . +..+...+|+.||+|..+..
T Consensus 51 ~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~l~d~~g~v~~~ 113 (116)
T cd02966 51 DGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGLPTTFLIDRDGRIRAR 113 (116)
T ss_pred CCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCccceEEEECCCCcEEEE
Confidence 456677888875 788888888876554321110 0 11236788999999987754
No 180
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=48.63 E-value=76 Score=20.88 Aligned_cols=38 Identities=21% Similarity=0.314 Sum_probs=30.0
Q ss_pred HHHHHHHHHHCCcEEeeeccc--cCCceEEEEEEEcCCCC
Q 032603 35 MAIVERRLKEMKIDYVKSRVE--EGGINVDQLFFHDPDGS 72 (137)
Q Consensus 35 Id~v~~rLke~GI~~~~~~~~--~~g~g~r~vFf~DPDGn 72 (137)
+..+...|.+.|+.+....+. .+|.-...+|+.|++|.
T Consensus 14 fa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~ 53 (76)
T cd04927 14 LHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAREL 53 (76)
T ss_pred HHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCC
Confidence 667889999999999986543 34555789999999887
No 181
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=48.45 E-value=89 Score=21.59 Aligned_cols=74 Identities=8% Similarity=0.101 Sum_probs=43.4
Q ss_pred CCceEEEEeCCHHHHHHHHHH-CCcEEeeeccccCCceEEEEEEE-cCCCCEEEEEeecCCCCcccCCCccccccccccc
Q 032603 24 KDNHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFH-DPDGSMIEICNCDVLPVVPLAGDAVRIRSCTSTV 101 (137)
Q Consensus 24 ~~~HIAF~VedId~v~~rLke-~GI~~~~~~~~~~g~g~r~vFf~-DPDGn~IEI~e~~~~p~~pl~~~~~~~~~~~~~~ 101 (137)
++.|+++.|.|+++..+..++ .|.+..... .+ .+|+. +.++..+-+.... |.. ..+...+.++-
T Consensus 6 ~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~---~~----~~~l~~~~~~~~i~l~~~~--~~~-----~~iaf~v~~~~ 71 (124)
T cd08361 6 DIAYVRLGTRDLAGATRFATDILGLQVAERT---AK----ATYFRSDARDHTLVYIEGD--PAE-----QASGFELRDDD 71 (124)
T ss_pred EeeEEEEeeCCHHHHHHHHHhccCceeccCC---CC----eEEEEcCCccEEEEEEeCC--Cce-----EEEEEEECCHH
Confidence 568999999999999998877 598875432 12 33443 4455655554322 221 11334453444
Q ss_pred chhhhhhHhh
Q 032603 102 NCNFHQQQIQ 111 (137)
Q Consensus 102 ~~~~~~~~~~ 111 (137)
.+....++++
T Consensus 72 dv~~~~~~l~ 81 (124)
T cd08361 72 ALESAATELE 81 (124)
T ss_pred HHHHHHHHHH
Confidence 5656555554
No 182
>PRK03467 hypothetical protein; Provisional
Probab=48.42 E-value=78 Score=24.26 Aligned_cols=48 Identities=8% Similarity=0.102 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEeec
Q 032603 33 ENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCD 80 (137)
Q Consensus 33 edId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~~ 80 (137)
++++.+.+.|++..+--.......+-|....+|+.|+++..+=+.+.+
T Consensus 5 ~~~~~I~~fl~~~hvltLa~~~~~~~w~A~cFY~fd~~~~~l~~~S~~ 52 (144)
T PRK03467 5 DTLTAISRWLAKQHVVTLCVGQEGELWCANCFYVFDAQKVAFYLLTEE 52 (144)
T ss_pred hHHHHHHHHHHhCcEEEEEEEcCCCcceEEEEEEEcCCCeEEEEEcCC
Confidence 457788899999887665543333345567888899999999888754
No 183
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=47.63 E-value=35 Score=22.79 Aligned_cols=28 Identities=11% Similarity=0.131 Sum_probs=23.6
Q ss_pred CCceEEEEeCCHHHHHHHHHH-CCcEEee
Q 032603 24 KDNHISFQCENMAIVERRLKE-MKIDYVK 51 (137)
Q Consensus 24 ~~~HIAF~VedId~v~~rLke-~GI~~~~ 51 (137)
+++|+.|.|.|+++..+..++ .|.+...
T Consensus 3 ~i~hv~l~v~d~~~s~~FY~~~lG~~~~~ 31 (120)
T cd08362 3 ALRGVGLGVPDLAAAAAFYREVWGLSVVA 31 (120)
T ss_pred eeeEEEEecCCHHHHHHHHHhCcCcEEEE
Confidence 678999999999999988876 5887654
No 184
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=47.51 E-value=71 Score=22.29 Aligned_cols=45 Identities=20% Similarity=0.333 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHCCcEEeeecccc-------CCceEEEEEEEcCCCCEEEEEe
Q 032603 34 NMAIVERRLKEMKIDYVKSRVEE-------GGINVDQLFFHDPDGSMIEICN 78 (137)
Q Consensus 34 dId~v~~rLke~GI~~~~~~~~~-------~g~g~r~vFf~DPDGn~IEI~e 78 (137)
+.+.+.+.+++.|+.+---..+. +-.+....|+.|++|..+....
T Consensus 72 ~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~~v~~~P~~~vid~~G~v~~~~~ 123 (126)
T cd03012 72 DLANVKSAVLRYGITYPVANDNDYATWRAYGNQYWPALYLIDPTGNVRHVHF 123 (126)
T ss_pred CHHHHHHHHHHcCCCCCEEECCchHHHHHhCCCcCCeEEEECCCCcEEEEEe
Confidence 57788888888888754221110 1123578999999998887653
No 185
>PRK06704 RNA polymerase factor sigma-70; Validated
Probab=45.92 E-value=17 Score=29.37 Aligned_cols=44 Identities=20% Similarity=0.276 Sum_probs=31.1
Q ss_pred EEEeCCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEE
Q 032603 29 SFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEIC 77 (137)
Q Consensus 29 AF~VedId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~ 77 (137)
||+-+|-+.+++.| .||.+..-+.. ++ +-.|++.||||+-..+|
T Consensus 183 ~~~~~~~~~~~~~~--~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~ 226 (228)
T PRK06704 183 SIREERPELLTKLL--PTIDFTKLPSK-QP--VLLFNVKQPSSYSCMLC 226 (228)
T ss_pred HHHhcCHHHHHHHh--ccceeeecccc-cc--eEEEEeeCCCccchhhc
Confidence 45556777777766 78888875532 22 57888999999976654
No 186
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=45.76 E-value=94 Score=21.08 Aligned_cols=39 Identities=26% Similarity=0.342 Sum_probs=28.0
Q ss_pred HHHHHHHHHHCCcEEeeeccc--cCCce-EEEEEEEcCCCCEE
Q 032603 35 MAIVERRLKEMKIDYVKSRVE--EGGIN-VDQLFFHDPDGSMI 74 (137)
Q Consensus 35 Id~v~~rLke~GI~~~~~~~~--~~g~g-~r~vFf~DPDGn~I 74 (137)
+..+.+-+.+.|+.+....+. ..|.. ...||+ |.+|..|
T Consensus 14 L~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl 55 (75)
T cd04896 14 LYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKI 55 (75)
T ss_pred HHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCcc
Confidence 667888999999999987655 43433 455666 9888753
No 187
>PRK10234 DNA-binding transcriptional activator GutM; Provisional
Probab=43.67 E-value=40 Score=25.10 Aligned_cols=56 Identities=13% Similarity=-0.061 Sum_probs=37.4
Q ss_pred EEeCCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEeecCCCCc
Q 032603 30 FQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVLPVV 85 (137)
Q Consensus 30 F~VedId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~~~~p~~ 85 (137)
|++.++...+..|+++|-.-.......-+.|+--++..|.+|..+|-.....+-|+
T Consensus 22 ~Qik~Fn~~~~~L~~~G~V~iGr~~grf~~g~IvllaiD~~~~I~d~~~M~G~TVF 77 (118)
T PRK10234 22 WQISRFNRAFDTLCQQGRVGVGRSSGRFKPRVVVALALDEQQRVVDTLFMKGLTVF 77 (118)
T ss_pred HHHHHHHHHHHHHHhcCceEEecccCccCCCeEEEEEECCCCcEEeeEEEccEEEE
Confidence 45667888999999998533222111122346788999999999997776654443
No 188
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=42.71 E-value=56 Score=19.67 Aligned_cols=24 Identities=13% Similarity=0.239 Sum_probs=17.7
Q ss_pred eEEEEeCC---HHHHHHHHHHCCcEEe
Q 032603 27 HISFQCEN---MAIVERRLKEMKIDYV 50 (137)
Q Consensus 27 HIAF~Ved---Id~v~~rLke~GI~~~ 50 (137)
++.+.+.+ ++.+.+.|++.|+++.
T Consensus 46 ~i~v~~~~~~~l~~l~~~l~~~g~~~~ 72 (73)
T cd04886 46 ELTLETRGAEHIEEIIAALREAGYDVR 72 (73)
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCEEe
Confidence 44455544 5699999999999875
No 189
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=42.68 E-value=66 Score=21.74 Aligned_cols=51 Identities=18% Similarity=0.282 Sum_probs=34.0
Q ss_pred CCceEEEEeCCHHHHHHHHHHCCc--EEeeecc----cc-CCc------eEEEEEEEcCCCCEE
Q 032603 24 KDNHISFQCENMAIVERRLKEMKI--DYVKSRV----EE-GGI------NVDQLFFHDPDGSMI 74 (137)
Q Consensus 24 ~~~HIAF~VedId~v~~rLke~GI--~~~~~~~----~~-~g~------g~r~vFf~DPDGn~I 74 (137)
+..-+++..++.+.+.+.+++.++ ++..+.. .. +-. ....+|+.||+|..+
T Consensus 59 ~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~ 122 (124)
T PF00578_consen 59 GVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIR 122 (124)
T ss_dssp TEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEE
T ss_pred eEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEE
Confidence 456788888888888888887765 3443321 00 111 367899999999865
No 190
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=42.46 E-value=83 Score=21.86 Aligned_cols=54 Identities=13% Similarity=0.244 Sum_probs=32.5
Q ss_pred CCceEEEEeCCHHHHHHHHHHCCcEEeeecccc------CCc-eE---------EEEEEEcCCCCEEEEE
Q 032603 24 KDNHISFQCENMAIVERRLKEMKIDYVKSRVEE------GGI-NV---------DQLFFHDPDGSMIEIC 77 (137)
Q Consensus 24 ~~~HIAF~VedId~v~~rLke~GI~~~~~~~~~------~g~-g~---------r~vFf~DPDGn~IEI~ 77 (137)
+..=+++.+++.+.+.+.+++.|+.+.--..+. -|. .. ...|+.|++|..+-..
T Consensus 57 ~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~ 126 (140)
T cd03017 57 GAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVW 126 (140)
T ss_pred CCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEEE
Confidence 455677777777777777777766543211000 011 11 5778889999877765
No 191
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=42.24 E-value=38 Score=21.55 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=20.4
Q ss_pred CceEEEEeC---CHHHHHHHHHHCCcEEe
Q 032603 25 DNHISFQCE---NMAIVERRLKEMKIDYV 50 (137)
Q Consensus 25 ~~HIAF~Ve---dId~v~~rLke~GI~~~ 50 (137)
.-++.+++. +++++.+.|+++|+++.
T Consensus 39 ~v~v~ie~~~~~~~~~i~~~L~~~G~~~~ 67 (68)
T cd04885 39 RVLVGIQVPDREDLAELKERLEALGYPYV 67 (68)
T ss_pred EEEEEEEeCCHHHHHHHHHHHHHcCCCcc
Confidence 346777775 48899999999998764
No 192
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=42.17 E-value=43 Score=25.58 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=18.8
Q ss_pred EEEeCCHHHHHHHHHHCCcEEee
Q 032603 29 SFQCENMAIVERRLKEMKIDYVK 51 (137)
Q Consensus 29 AF~VedId~v~~rLke~GI~~~~ 51 (137)
=|.+.|++.+.++|++.|..+..
T Consensus 7 K~~v~d~~~~~~~L~~~g~~~~~ 29 (174)
T TIGR00318 7 KAKIPDKEKVVEKLKNKGFKFIK 29 (174)
T ss_pred EEEcCCHHHHHHHHHhcCccccc
Confidence 36778999999999999966553
No 193
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=42.12 E-value=58 Score=24.44 Aligned_cols=60 Identities=20% Similarity=0.139 Sum_probs=38.7
Q ss_pred eEEEEEEEcCCCCEEEEEeecCCCCcccCCCcccccccccccchhhhh-hHhhhcCCCCCCCcccccc
Q 032603 60 NVDQLFFHDPDGSMIEICNCDVLPVVPLAGDAVRIRSCTSTVNCNFHQ-QQIQQEPQINPQSCLSDSI 126 (137)
Q Consensus 60 g~r~vFf~DPDGn~IEI~e~~~~p~~pl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 126 (137)
|.+.+|+.|++|...|+-...- .-+=-+..|| -|--+-+.. .-+-++..+.|..|-.|.-
T Consensus 27 G~K~Lfl~d~~g~~~e~~~~~c------vLDFyVhes~-QR~G~Gk~LF~~ML~~e~~~p~~~a~DrP 87 (120)
T PF05301_consen 27 GYKKLFLLDERGQHREIEPLLC------VLDFYVHESR-QRRGYGKRLFDHMLQEENVSPHQLAIDRP 87 (120)
T ss_pred eeeeEEEEcCCCCEEEecccce------eeeEEEEece-eccCchHHHHHHHHHHcCCCcccceecCC
Confidence 5799999999999999752111 1111244677 555554443 4455778888988877753
No 194
>PF15067 FAM124: FAM124 family
Probab=40.72 E-value=15 Score=30.62 Aligned_cols=41 Identities=20% Similarity=0.184 Sum_probs=26.2
Q ss_pred CCceEEEEeCCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEE
Q 032603 24 KDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMI 74 (137)
Q Consensus 24 ~~~HIAF~VedId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~I 74 (137)
...-+.|+|.||.+++-.|-.-=.++ .++.| -..|||||.|
T Consensus 193 esavLqF~V~~igqLvpLLPnpc~PI-----S~~rW-----qT~D~DGNkI 233 (236)
T PF15067_consen 193 ESAVLQFRVEDIGQLVPLLPNPCSPI-----SETRW-----QTEDYDGNKI 233 (236)
T ss_pred cceEEEEEecchhhhcccCCCCcccc-----cCCcc-----eeeCCCCCEe
Confidence 35678899999998876663322111 12222 3579999987
No 195
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=39.85 E-value=1e+02 Score=19.76 Aligned_cols=40 Identities=25% Similarity=0.504 Sum_probs=29.6
Q ss_pred HHHHHHHHHHCCcEEeeeccc-c-CCceEEEEEEEcCCCCEE
Q 032603 35 MAIVERRLKEMKIDYVKSRVE-E-GGINVDQLFFHDPDGSMI 74 (137)
Q Consensus 35 Id~v~~rLke~GI~~~~~~~~-~-~g~g~r~vFf~DPDGn~I 74 (137)
+..+..-|...|+.+...... . +|.-...+|+.|++|..+
T Consensus 15 l~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~ 56 (73)
T cd04900 15 FARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPI 56 (73)
T ss_pred HHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCC
Confidence 667788999999999986542 2 344467888899998743
No 196
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=39.32 E-value=63 Score=28.54 Aligned_cols=52 Identities=17% Similarity=0.325 Sum_probs=39.4
Q ss_pred CCCCCCceEEEEeCCHHHHHHHHHHCCcEEeeecc-------cc-CCceEEEEEEEcCCC
Q 032603 20 NINPKDNHISFQCENMAIVERRLKEMKIDYVKSRV-------EE-GGINVDQLFFHDPDG 71 (137)
Q Consensus 20 ~inp~~~HIAF~VedId~v~~rLke~GI~~~~~~~-------~~-~g~g~r~vFf~DPDG 71 (137)
.+.|...-+||+|+|.+..+++-.+.|.+....+. +. .|.|..-+||-|.+|
T Consensus 83 ~Hgps~~a~a~~V~DA~~A~a~A~a~gA~~~~~~~g~~e~~ipai~giggsllyfvd~~~ 142 (363)
T COG3185 83 KHGPSACAMAFRVDDAEQALARALALGARTIDTEIGAGEVDIPAIRGIGGSLLYFVDRYG 142 (363)
T ss_pred hcCCchheeEEeeCCHHHHHHHHHHcCCccccCCCCCccccccceeccCCcEEEEeccCC
Confidence 56788899999999999999999999985443322 10 134457999999984
No 197
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=38.07 E-value=25 Score=25.06 Aligned_cols=37 Identities=27% Similarity=0.231 Sum_probs=25.8
Q ss_pred EeCCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCC
Q 032603 31 QCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPD 70 (137)
Q Consensus 31 ~VedId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPD 70 (137)
.+++.+.+.+.|++.||.+..-... ++ .-.+.|.|+|
T Consensus 44 ~~~~~~~v~~~L~~~~I~~k~i~~~-~~--~llirf~~~~ 80 (101)
T PF13721_consen 44 QLPDAFQVEQALKAAGIAVKSIEQE-GD--SLLIRFDSTD 80 (101)
T ss_pred cCChHHHHHHHHHHCCCCcceEEee-CC--EEEEEECCHH
Confidence 4567789999999999999764433 22 2456666654
No 198
>PF11633 SUD-M: Single-stranded poly(A) binding domain; InterPro: IPR024375 This domain identifies non-structural protein 3 (Nsp3). It is found in human SARS coronavirus polyprotein 1a and 1ab, and in related coronavirus polyproteins [].; PDB: 2KQV_A 2W2G_A 2WCT_D 2JZE_A 2JZF_A 2RNK_A 2JZD_A.
Probab=37.27 E-value=70 Score=24.70 Aligned_cols=48 Identities=15% Similarity=0.259 Sum_probs=29.5
Q ss_pred ceEEEEeCCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEE
Q 032603 26 NHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEI 76 (137)
Q Consensus 26 ~HIAF~VedId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI 76 (137)
.-+++-|-|..++.+.||.+|+.+.+.....+| .++||.--+-=+-+|
T Consensus 36 g~~~pvc~D~~A~~k~lkr~gv~~~egl~t~~G---~~fY~Ys~~~Pl~~v 83 (142)
T PF11633_consen 36 GLLCPVCIDYPAFCKTLKRKGVDPKEGLQTVDG---VQFYFYSSKTPLTDV 83 (142)
T ss_dssp T-EEEEETT-HHHHHHHHHTTS---SEEEES-S---SEEEEE-TTS-HHHH
T ss_pred CcEEEEEeccHHHHHHHhccCcccccceEEecc---eEEEEEecCCcHHHH
Confidence 457888999999999999999999987765555 467776444333333
No 199
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=36.96 E-value=1.6e+02 Score=22.80 Aligned_cols=57 Identities=16% Similarity=0.155 Sum_probs=34.7
Q ss_pred CCceEEEEeCCHHHHHHHHHH----CCc--EEeeecc----cc-------CCceEEEEEEEcCCCCEEEEEeec
Q 032603 24 KDNHISFQCENMAIVERRLKE----MKI--DYVKSRV----EE-------GGINVDQLFFHDPDGSMIEICNCD 80 (137)
Q Consensus 24 ~~~HIAF~VedId~v~~rLke----~GI--~~~~~~~----~~-------~g~g~r~vFf~DPDGn~IEI~e~~ 80 (137)
+..-+++.+++.+...+..++ .++ ++..++. .. .|...+..|+.||+|....+....
T Consensus 65 g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~ 138 (187)
T PRK10382 65 GVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTA 138 (187)
T ss_pred CCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEeC
Confidence 345788888887765555543 244 3333221 00 122249999999999988886543
No 200
>COG1871 CheD Chemotaxis protein; stimulates methylation of MCP proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=36.74 E-value=71 Score=25.24 Aligned_cols=39 Identities=21% Similarity=0.322 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCE
Q 032603 33 ENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSM 73 (137)
Q Consensus 33 edId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~ 73 (137)
.|.+.+.+.|++.||++..... +|...|.+||.=-+|-+
T Consensus 114 rNv~~~~~~L~~~~IpilaeD~--Gg~~gR~i~F~p~tG~v 152 (164)
T COG1871 114 RNVEFAKEFLKDEGIPILAEDT--GGDSGRTIEFNPSTGRV 152 (164)
T ss_pred HHHHHHHHHHHHcCCcEEEhhh--CCCCCcEEEEecCCCcE
Confidence 4899999999999999998764 23334788886556653
No 201
>PRK13599 putative peroxiredoxin; Provisional
Probab=36.68 E-value=1.6e+02 Score=23.36 Aligned_cols=55 Identities=16% Similarity=0.273 Sum_probs=32.9
Q ss_pred CCceEEEEeCCHHH---HHHHHHHC---Cc--EEeeecc----ccCCc--------eEEEEEEEcCCCCEEEEEe
Q 032603 24 KDNHISFQCENMAI---VERRLKEM---KI--DYVKSRV----EEGGI--------NVDQLFFHDPDGSMIEICN 78 (137)
Q Consensus 24 ~~~HIAF~VedId~---v~~rLke~---GI--~~~~~~~----~~~g~--------g~r~vFf~DPDGn~IEI~e 78 (137)
+..-+++.+++.+. +.+.+++. ++ ++..++. ...|+ ..+.+|+.||||....+..
T Consensus 62 gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~ 136 (215)
T PRK13599 62 NTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMY 136 (215)
T ss_pred CCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEEEE
Confidence 45678888888654 34445542 33 3333221 01121 3699999999999888754
No 202
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=36.59 E-value=70 Score=24.29 Aligned_cols=56 Identities=23% Similarity=0.368 Sum_probs=32.0
Q ss_pred CCCCCceEEEEeCCHHHHHHHHHHCCcEEeeeccc--cCCc---eEEEEEEEcCCCCEEEEEee
Q 032603 21 INPKDNHISFQCENMAIVERRLKEMKIDYVKSRVE--EGGI---NVDQLFFHDPDGSMIEICNC 79 (137)
Q Consensus 21 inp~~~HIAF~VedId~v~~rLke~GI~~~~~~~~--~~g~---g~r~vFf~DPDGn~IEI~e~ 79 (137)
.++.+.-+.+..++++++. +..|+.+...... ++.. ....+|+.||+|.++.+.+.
T Consensus 113 ~~~~~~~ltg~~~~i~~l~---~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~~ 173 (174)
T PF02630_consen 113 FGPDFIGLTGSREEIEELA---KQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYNL 173 (174)
T ss_dssp HTTTCEEEEEEHHHHHHHH---HHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEECS
T ss_pred cCCCcceeEeCHHHHHHHH---HHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEcc
Confidence 3445555555555555544 4567777654431 1110 13589999999999887653
No 203
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=36.44 E-value=1.2e+02 Score=19.54 Aligned_cols=46 Identities=17% Similarity=0.477 Sum_probs=31.4
Q ss_pred EEEEeCC----HHHHHHHHHHCCcEEeeecc-ccCCceEEEEEEEcCCCCE
Q 032603 28 ISFQCEN----MAIVERRLKEMKIDYVKSRV-EEGGINVDQLFFHDPDGSM 73 (137)
Q Consensus 28 IAF~Ved----Id~v~~rLke~GI~~~~~~~-~~~g~g~r~vFf~DPDGn~ 73 (137)
+.+.+.| +..+...|.+.|+.+..... ..++.....+++.|++|..
T Consensus 4 i~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~ 54 (72)
T cd04926 4 LELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNP 54 (72)
T ss_pred EEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCc
Confidence 4455555 77888999999999976443 2223335678888988873
No 204
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=36.43 E-value=37 Score=25.99 Aligned_cols=25 Identities=12% Similarity=0.247 Sum_probs=21.4
Q ss_pred eEEEEeCCHHHHHHHHHHCCcEEee
Q 032603 27 HISFQCENMAIVERRLKEMKIDYVK 51 (137)
Q Consensus 27 HIAF~VedId~v~~rLke~GI~~~~ 51 (137)
-+-++|+|+|+..+.|++.||++..
T Consensus 111 lli~r~ed~d~~~~aLed~gi~~~~ 135 (142)
T COG4747 111 LLIVRVEDIDRAIKALEDAGIKLIG 135 (142)
T ss_pred EEEEEhhHHHHHHHHHHHcCCeecC
Confidence 3556789999999999999999874
No 205
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.96 E-value=32 Score=21.45 Aligned_cols=24 Identities=17% Similarity=0.170 Sum_probs=18.4
Q ss_pred ceEEEEe---CCHHHHHHHHHHCCcEE
Q 032603 26 NHISFQC---ENMAIVERRLKEMKIDY 49 (137)
Q Consensus 26 ~HIAF~V---edId~v~~rLke~GI~~ 49 (137)
.++.|.+ ++.+++.+.|+++|+++
T Consensus 43 ~~~~i~v~~~~~~~~~~~~L~~~G~~v 69 (69)
T cd04909 43 GILRISFKTQEDRERAKEILKEAGYEV 69 (69)
T ss_pred EEEEEEECCHHHHHHHHHHHHHcCCcC
Confidence 4555666 46899999999999864
No 206
>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose. KHK can also phosphorylate several other furanose sugars. It is found in higher eukaryotes where it is believed to function as a dimer and requires K(+) and ATP to be active. In humans, hepatic KHK deficiency causes fructosuria, a benign inborn error of metabolism.
Probab=34.42 E-value=1.7e+02 Score=23.15 Aligned_cols=49 Identities=14% Similarity=0.154 Sum_probs=30.3
Q ss_pred HHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEeecCCC
Q 032603 35 MAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVLP 83 (137)
Q Consensus 35 Id~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~~~~p 83 (137)
-+.+.+.|++.||....-...++......+++.|++|..-.+......+
T Consensus 65 g~~~~~~l~~~gId~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~~~~~ 113 (290)
T cd01939 65 FESLLDDFQSRGIDISHCYRKDIDEPASSYIIRSRAGGRTTIVNDNNLP 113 (290)
T ss_pred HHHHHHHHHHcCCceeeeeEcCCCCCeeEEEEEcCCCCeEEEEeCCCCC
Confidence 4567799999999976532222222235688888888765555443333
No 207
>PF14907 NTP_transf_5: Uncharacterised nucleotidyltransferase
Probab=33.23 E-value=1.7e+02 Score=22.59 Aligned_cols=49 Identities=16% Similarity=0.227 Sum_probs=36.2
Q ss_pred ceEEEEe--CCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEeec
Q 032603 26 NHISFQC--ENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCD 80 (137)
Q Consensus 26 ~HIAF~V--edId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~~ 80 (137)
+-+-|-| ++++++.+.|.+.|+...... . ....|.+.+.|..||++..-
T Consensus 95 ~DiDlLV~~~d~~~a~~~L~~~Gy~~~~~~---~---~~~~~~~~~~~~~idlH~~l 145 (249)
T PF14907_consen 95 GDIDLLVPPEDLERAVELLEELGYRIESPS---E---HHWVYSHEPKGISIDLHWRL 145 (249)
T ss_pred CCeEEEEeCCcHHHHHHHHHHcCCEeccCC---C---cceEEEecCCCEEEEEEecC
Confidence 3444556 699999999999999877641 1 14566666899999998654
No 208
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=33.22 E-value=40 Score=23.36 Aligned_cols=31 Identities=13% Similarity=0.191 Sum_probs=23.0
Q ss_pred CCCCceEEEEeCC---HHHHHHHHHHCCcEEeee
Q 032603 22 NPKDNHISFQCEN---MAIVERRLKEMKIDYVKS 52 (137)
Q Consensus 22 np~~~HIAF~Ved---Id~v~~rLke~GI~~~~~ 52 (137)
+.+.-.++|+|++ ++++.++|++.|+++..-
T Consensus 48 ~~a~vlvgi~v~~~~~~~~l~~~L~~~gy~~~dl 81 (91)
T PF00585_consen 48 DFARVLVGIEVPDAEDLEELIERLKALGYPYEDL 81 (91)
T ss_dssp SCSEEEEEEE-SSTHHHHHHHHHHTSSS-EEECT
T ss_pred CeeeEEEEEEeCCHHHHHHHHHHHHHcCCCeEEC
Confidence 3355688999974 688999999999999864
No 209
>PF10922 DUF2745: Protein of unknown function (DUF2745); InterPro: IPR020147 The T7-like bacteriophage gene 1.2 protein is an inhibitor of the Escherichia coli dGTP triphosphohydrolase (dGTPase) and is implicated in DNA replication.
Probab=33.19 E-value=97 Score=22.01 Aligned_cols=41 Identities=15% Similarity=0.146 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHCCcEEeeeccccCCc--eEEEEEEEcCCCCEE
Q 032603 34 NMAIVERRLKEMKIDYVKSRVEEGGI--NVDQLFFHDPDGSMI 74 (137)
Q Consensus 34 dId~v~~rLke~GI~~~~~~~~~~g~--g~r~vFf~DPDGn~I 74 (137)
++.++..||+++.+.+..+.....-. -...+-+.|-+||.|
T Consensus 11 afKaA~~Rl~~lD~~V~~e~~~~~~~~~~~~~Lrv~dr~G~~v 53 (85)
T PF10922_consen 11 AFKAATDRLYELDFAVISEEFYYSNPAKMCMVLRVEDRSGNSV 53 (85)
T ss_pred HHHHHHHHHhhCcEEEEEEeeccccchhhEEEEEEEecCCCEe
Confidence 46678899999999888766432211 134577889999998
No 210
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=32.47 E-value=1.6e+02 Score=22.12 Aligned_cols=52 Identities=15% Similarity=0.206 Sum_probs=33.5
Q ss_pred CCceEEEEeC-CHHHHHHHHHHCCcEEeeeccc---------c-CCceEEEEEEEcCCCCEEE
Q 032603 24 KDNHISFQCE-NMAIVERRLKEMKIDYVKSRVE---------E-GGINVDQLFFHDPDGSMIE 75 (137)
Q Consensus 24 ~~~HIAF~Ve-dId~v~~rLke~GI~~~~~~~~---------~-~g~g~r~vFf~DPDGn~IE 75 (137)
++.-+++..+ +.+.+.+.++++|+.+...+.. . +-.+.-..|+.||+|..+.
T Consensus 65 ~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~l~~~y~v~~iPt~vlId~~G~Vv~ 127 (146)
T cd03008 65 QLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRELEAQFSVEELPTVVVLKPDGDVLA 127 (146)
T ss_pred CEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHHHHHHcCCCCCCEEEEECCCCcEEe
Confidence 3556667666 5667888999999664221110 0 1113678999999999774
No 211
>PF09066 B2-adapt-app_C: Beta2-adaptin appendage, C-terminal sub-domain; InterPro: IPR015151 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents a subdomain of the appendage (ear) domain of beta-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. This domain is required for binding to clathrin, and its subsequent polymerisation. Furthermore, a hydrophobic patch present in the domain also binds to a subset of D-phi-F/W motif-containing proteins that are bound by the alpha-adaptin appendage domain (epsin, AP180, eps15) []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1E42_B 2G30_A 2IV9_B 2IV8_A 3HS9_A 3H1Z_A.
Probab=31.10 E-value=1.8e+02 Score=20.16 Aligned_cols=46 Identities=17% Similarity=0.276 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHCCcEEeeeccccCCceEEEEEE--EcCCCCE--EEEEeec
Q 032603 33 ENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFF--HDPDGSM--IEICNCD 80 (137)
Q Consensus 33 edId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf--~DPDGn~--IEI~e~~ 80 (137)
.+.+.+.++|+..+|-+......+++ .+.+|+ ++..|.+ +|+.--.
T Consensus 36 ~~~~~i~~~L~~~nI~~iA~~~~~~~--~~~~y~s~~~~~~~~fL~El~~~~ 85 (114)
T PF09066_consen 36 PSPDAIEEKLQANNIFTIASGKVDNG--QKFFYFSAKTTNGIWFLVELTIDP 85 (114)
T ss_dssp --HHHHHHHHHCTT-EEEEEEECTT---EEEEEEEEEBTTS-EEEEEEEE-T
T ss_pred CcHHHHHHHHHHCCEEEEecCCCCcc--ccEEEEEEEcCCCcEEEEEEEEcC
Confidence 38999999999999999987644333 344444 4666544 4554333
No 212
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=30.09 E-value=1e+02 Score=23.98 Aligned_cols=32 Identities=16% Similarity=0.186 Sum_probs=26.9
Q ss_pred CCCCceEEEEeC--CHHHHHHHHHHCCcEEeeec
Q 032603 22 NPKDNHISFQCE--NMAIVERRLKEMKIDYVKSR 53 (137)
Q Consensus 22 np~~~HIAF~Ve--dId~v~~rLke~GI~~~~~~ 53 (137)
++..+++++... |+..+.++|+++|..+.--.
T Consensus 103 ~~~iD~~vLvSgD~DF~~Lv~~lre~G~~V~v~g 136 (160)
T TIGR00288 103 NPNIDAVALVTRDADFLPVINKAKENGKETIVIG 136 (160)
T ss_pred cCCCCEEEEEeccHhHHHHHHHHHHCCCEEEEEe
Confidence 457889999987 68999999999999987644
No 213
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=29.99 E-value=1.8e+02 Score=19.66 Aligned_cols=49 Identities=4% Similarity=0.054 Sum_probs=32.1
Q ss_pred ceEEEEeCCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEee
Q 032603 26 NHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNC 79 (137)
Q Consensus 26 ~HIAF~VedId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~ 79 (137)
..+++.|+|+++..+.-+..|.+..... ...+ ..++.-.++..+.+...
T Consensus 2 ~~v~l~V~Dl~~s~~FY~~lGf~~~~~~-~~~~----~~~~~~~~~~~l~l~~~ 50 (124)
T cd09012 2 IFINLPVKDLEKSTAFYTALGFEFNPQF-SDEK----AACMVISDNIFVMLLTE 50 (124)
T ss_pred EEEEeecCCHHHHHHHHHHCCCEEcccc-CCCC----eEEEEECCceEEEEEcH
Confidence 4789999999999998888888876422 1111 12222245677887764
No 214
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=29.45 E-value=2e+02 Score=20.13 Aligned_cols=56 Identities=11% Similarity=0.084 Sum_probs=33.5
Q ss_pred CCceEEEEeCCHHHHHHHHHHCCcEEee--ecc--c----cCCc-------eEEEEEEEcCCCCEEEEEee
Q 032603 24 KDNHISFQCENMAIVERRLKEMKIDYVK--SRV--E----EGGI-------NVDQLFFHDPDGSMIEICNC 79 (137)
Q Consensus 24 ~~~HIAF~VedId~v~~rLke~GI~~~~--~~~--~----~~g~-------g~r~vFf~DPDGn~IEI~e~ 79 (137)
+..-+++.+++.+.+.+.+++.++.+.- +.. . ..|. ..+..|+.|++|..+-....
T Consensus 62 ~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~~~ 132 (149)
T cd03018 62 GAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAWVS 132 (149)
T ss_pred CCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEEEec
Confidence 3556777777777777777777666442 110 0 0011 12367899999987766543
No 215
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=29.32 E-value=1.1e+02 Score=24.52 Aligned_cols=53 Identities=13% Similarity=0.186 Sum_probs=30.8
Q ss_pred CCceEEEEeCCHH---HHHHHHHHCCcEEeeeccccCCceEEEEEEEcC---CCCEEEEEe
Q 032603 24 KDNHISFQCENMA---IVERRLKEMKIDYVKSRVEEGGINVDQLFFHDP---DGSMIEICN 78 (137)
Q Consensus 24 ~~~HIAF~VedId---~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DP---DGn~IEI~e 78 (137)
..+|+|++|.+.+ ++.+.|.+.|--+.+..+ +|.-..-+=+.-| -|-.|++.+
T Consensus 34 ~~DHialRvn~~~~A~~~~~~l~~~G~llSen~I--NGRPI~l~~L~qPL~~~~~~I~~vE 92 (185)
T PF06185_consen 34 EIDHIALRVNSNETAERWKQALLQCGELLSENMI--NGRPICLFKLNQPLQFGGWSIDCVE 92 (185)
T ss_dssp EEEEEEEE-S-HHHHHHHHHHHTTTEEEEEEEEE--TTEEEEEEEEEEEEEETTEEEEEEE
T ss_pred CCcEEEEecCCHHHHHHHHHHHHHhChhhhhcee--CCeeEEEEEcCCchhcCCeeEEEEE
Confidence 3579999999754 566778888966665543 3421222222233 566777777
No 216
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=28.44 E-value=88 Score=20.06 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=20.6
Q ss_pred eEEEEeC--CHHHHHHHHHHCCcEEee
Q 032603 27 HISFQCE--NMAIVERRLKEMKIDYVK 51 (137)
Q Consensus 27 HIAF~Ve--dId~v~~rLke~GI~~~~ 51 (137)
.++|.++ |++.+.+.|+++|+.+.-
T Consensus 39 ~isFtv~~~d~~~~~~il~~~~~~~~~ 65 (67)
T cd04914 39 EVIFTVDGEVAEKAVDILEKMGLDPSV 65 (67)
T ss_pred CEEEEEchhhHHHHHHHHHHcCCceEe
Confidence 5888886 688888899999998753
No 217
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=28.28 E-value=1.6e+02 Score=19.11 Aligned_cols=52 Identities=15% Similarity=0.278 Sum_probs=33.0
Q ss_pred CCCCceEEEEeC-CHHHHHHHHHHCCcEEeeecccc----------CCceEEEEEEEcCCCCE
Q 032603 22 NPKDNHISFQCE-NMAIVERRLKEMKIDYVKSRVEE----------GGINVDQLFFHDPDGSM 73 (137)
Q Consensus 22 np~~~HIAF~Ve-dId~v~~rLke~GI~~~~~~~~~----------~g~g~r~vFf~DPDGn~ 73 (137)
+.+..-+++.++ +.+.+.+.+++.+.....-+... +-.+.-.+++.||||..
T Consensus 33 ~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 33 KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGINGIPTLVLLDPDGKI 95 (95)
T ss_dssp TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-TSSSEEEEEETTSBE
T ss_pred CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCCCcCCEEEEECCCCCC
Confidence 345666777776 68899999999955544322110 11135799999999973
No 218
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=28.15 E-value=1.8e+02 Score=19.13 Aligned_cols=49 Identities=8% Similarity=0.177 Sum_probs=34.7
Q ss_pred ceEEEEeCCHHHHHHHHHH-CCcEEeeeccccCCceEEEEEEEcCCCCEEEEEeec
Q 032603 26 NHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCD 80 (137)
Q Consensus 26 ~HIAF~VedId~v~~rLke-~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~~ 80 (137)
-|+++.|.|+++..+..++ .|.+..... .+ ..+++.-.++..+.+....
T Consensus 2 ~~~~l~v~d~~~s~~Fy~~~lG~~~~~~~---~~---~~~~l~~~~~~~~~l~~~~ 51 (122)
T cd08354 2 LETALYVDDLEAAEAFYEDVLGLELMLKE---DR---RLAFFWVGGRGMLLLFDPG 51 (122)
T ss_pred eEEEEEeCCHHHHHHHHHhccCCEEeecC---CC---ceEEEEcCCCcEEEEEecC
Confidence 4889999999999998874 698877532 12 3466665666777776544
No 219
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=28.09 E-value=92 Score=22.60 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=27.3
Q ss_pred ceEEEEeCCHHHHHHHH-HHCCcEEeeeccccCCceEEEEEEEc
Q 032603 26 NHISFQCENMAIVERRL-KEMKIDYVKSRVEEGGINVDQLFFHD 68 (137)
Q Consensus 26 ~HIAF~VedId~v~~rL-ke~GI~~~~~~~~~~g~g~r~vFf~D 68 (137)
.|+.+.|.|+++.++.+ .-.|.+..... .+ ..+|++-
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~---~~---~~~~l~~ 38 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLI---ED---RIVFMRC 38 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeee---CC---EEEEEEc
Confidence 49999999999999988 55699877543 11 3566663
No 220
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=27.31 E-value=2.6e+02 Score=20.75 Aligned_cols=58 Identities=9% Similarity=0.062 Sum_probs=38.1
Q ss_pred CCceEEEEeCCHHHHHHHHHHCCcE---Eeee-cc----cc----------CCceEEEEEEEcCCCCEEEEEeecC
Q 032603 24 KDNHISFQCENMAIVERRLKEMKID---YVKS-RV----EE----------GGINVDQLFFHDPDGSMIEICNCDV 81 (137)
Q Consensus 24 ~~~HIAF~VedId~v~~rLke~GI~---~~~~-~~----~~----------~g~g~r~vFf~DPDGn~IEI~e~~~ 81 (137)
+..=+++.+++.+...+.+++.|+. +..+ .. .. .|...|..|+-|++|..+...-..+
T Consensus 76 ~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~~ 151 (167)
T PRK00522 76 NTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSELVPE 151 (167)
T ss_pred CcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEECCC
Confidence 4567888888877777888888875 2222 10 00 1222458999999999988875444
No 221
>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]
Probab=26.82 E-value=75 Score=27.29 Aligned_cols=45 Identities=16% Similarity=0.136 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHCCcEEeeecc---ccCCceEEEEEEEcCC---CCEEEEEeecC
Q 032603 34 NMAIVERRLKEMKIDYVKSRV---EEGGINVDQLFFHDPD---GSMIEICNCDV 81 (137)
Q Consensus 34 dId~v~~rLke~GI~~~~~~~---~~~g~g~r~vFf~DPD---Gn~IEI~e~~~ 81 (137)
|+|..+++|+++|+.-..... ...| + .+.-.++| |.+|||...++
T Consensus 33 d~EkAie~LR~kG~akA~KKa~R~AaEG--l-i~~~~~~~~~~av~vEvN~ETD 83 (296)
T COG0264 33 DIEKAIEWLREKGIAKAAKKAGRIAAEG--L-IAAKVDGDGKKAVLVEVNCETD 83 (296)
T ss_pred CHHHHHHHHHHhchHhhhhhcCcchhcc--e-EEEEEcCCCcEEEEEEEecccc
Confidence 899999999999987665432 1223 2 33334666 88999976544
No 222
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=26.04 E-value=2.7e+02 Score=21.00 Aligned_cols=52 Identities=15% Similarity=0.151 Sum_probs=28.0
Q ss_pred ceEEEEeC-CHHHHHHHHHHCCcEEee---ecc----cc-CCceEEEEEEEcCCCCEEEEE
Q 032603 26 NHISFQCE-NMAIVERRLKEMKIDYVK---SRV----EE-GGINVDQLFFHDPDGSMIEIC 77 (137)
Q Consensus 26 ~HIAF~Ve-dId~v~~rLke~GI~~~~---~~~----~~-~g~g~r~vFf~DPDGn~IEI~ 77 (137)
.-+++.++ +.+.+.+.+++.|+++.- +.. .. +-.+....||.|++|..+...
T Consensus 99 ~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P~t~vid~~G~i~~~~ 159 (185)
T PRK15412 99 RVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRH 159 (185)
T ss_pred EEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCCeEEEECCCceEEEEE
Confidence 34555543 456666777777765431 110 00 111256788888888766554
No 223
>PF10706 Aminoglyc_resit: Aminoglycoside-2''-adenylyltransferase; InterPro: IPR019646 Aminoglycoside-2''-adenylyltransferase is conserved in Bacteria. It confers resistance to kanamycin, gentamicin, and tobramycin []. The protein is also produced by plasmids in various bacterial species and confers resistance to essentially all clinically available aminoglycosides except streptomycin, and it eliminates the synergism between aminoglycosides and cell-wall active agents []. ; PDB: 4E8I_A 4E8J_B.
Probab=25.94 E-value=1.9e+02 Score=23.04 Aligned_cols=28 Identities=25% Similarity=0.223 Sum_probs=22.2
Q ss_pred CceEEEEeCCHHHHHHHHHHCCcEEeee
Q 032603 25 DNHISFQCENMAIVERRLKEMKIDYVKS 52 (137)
Q Consensus 25 ~~HIAF~VedId~v~~rLke~GI~~~~~ 52 (137)
+--++|.-++-+++.+.|++.|..+...
T Consensus 44 DiDi~~~~~~~~~l~~~L~~~G~~ite~ 71 (174)
T PF10706_consen 44 DIDIFVPREDQAELRALLKELGYRITET 71 (174)
T ss_dssp EEEEEEEGGGHHHHHHHHHHTT-EEEEE
T ss_pred CeEEEEEcchhHHHHHHHHHCCCEEEEe
Confidence 3457777889999999999999987764
No 224
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.70 E-value=1.1e+02 Score=20.71 Aligned_cols=28 Identities=14% Similarity=0.298 Sum_probs=22.7
Q ss_pred CceEEEEeC--CHHHHHHHHHHCCcEEeee
Q 032603 25 DNHISFQCE--NMAIVERRLKEMKIDYVKS 52 (137)
Q Consensus 25 ~~HIAF~Ve--dId~v~~rLke~GI~~~~~ 52 (137)
.-.+++++. +++.+.++|++.|+.+..-
T Consensus 42 ~vlvGi~~~~~~~~~l~~~l~~~g~~~~dl 71 (81)
T cd04907 42 RVLVGIQVPDADLDELKERLDALGYPYQEE 71 (81)
T ss_pred eEEEEEEeChHHHHHHHHHHHHcCCCeEEC
Confidence 346788886 5789999999999998864
No 225
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=25.52 E-value=50 Score=24.63 Aligned_cols=35 Identities=17% Similarity=0.142 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCC
Q 032603 33 ENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPD 70 (137)
Q Consensus 33 edId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPD 70 (137)
.+.+.+++.|++.||.+..-..++++ -.+.|.|+|
T Consensus 50 ~~~~~v~~~L~~~gI~~ksi~~~~~~---~~irf~~~~ 84 (127)
T PRK10629 50 PDGFYVYQHLDANGIHIKSITPENDS---LLIRFDSPE 84 (127)
T ss_pred chHHHHHHHHHHCCCCcceEEeeCCE---EEEEECCHH
Confidence 78999999999999998875444332 456666653
No 226
>PF09633 DUF2023: Protein of unknown function (DUF2023); InterPro: IPR018594 This protein of approx.120 residues consists of three beta strands and five alpha helices, thought to fold into a homo-dimer. ; PDB: 2GUK_B.
Probab=25.41 E-value=1.6e+02 Score=21.57 Aligned_cols=35 Identities=29% Similarity=0.335 Sum_probs=23.8
Q ss_pred eCCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcC
Q 032603 32 CENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDP 69 (137)
Q Consensus 32 VedId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DP 69 (137)
.++.+.+.++|+..||+|.-.++..+ .-.+||=++
T Consensus 24 ~~~~~~~~~rL~~~~I~y~iq~v~~~---~iNlFFG~~ 58 (101)
T PF09633_consen 24 KRYEEFAIARLERQGIDYFIQPVGNG---KINLFFGRK 58 (101)
T ss_dssp GGGHHHHHHHHHHTT--EEEEE-TSS---EEEEEEE-H
T ss_pred HhhHHHHHHHHHHCCCCEEEEEcCCC---CEEEEECCH
Confidence 35788999999999999998776432 357887654
No 227
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=25.14 E-value=90 Score=20.35 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=20.5
Q ss_pred ceEEEEe--CCHHHHHHHHHHCCcEEee
Q 032603 26 NHISFQC--ENMAIVERRLKEMKIDYVK 51 (137)
Q Consensus 26 ~HIAF~V--edId~v~~rLke~GI~~~~ 51 (137)
.=+|+.+ +|.+.+.+.|++.|+.+..
T Consensus 41 CG~al~~~~~d~~~i~~~l~~~~i~~~~ 68 (73)
T PF11823_consen 41 CGLALRFEPEDLEKIKEILEENGIEYEG 68 (73)
T ss_pred CCEEEEEChhhHHHHHHHHHHCCCCeeE
Confidence 3455555 6899999999999998864
No 228
>PF04577 DUF563: Protein of unknown function (DUF563); InterPro: IPR007657 This is a family of uncharacterised glycosyltransferases belonging to glycosyltransferase family 61. Sequences are further processed into a mature form.; GO: 0016757 transferase activity, transferring glycosyl groups
Probab=25.07 E-value=1.8e+02 Score=21.53 Aligned_cols=48 Identities=23% Similarity=0.256 Sum_probs=33.9
Q ss_pred eCCHHHHHHHHHHCCcEEeeecc-----------------ccCCceEEEEEEEcCCCCEEEEEee
Q 032603 32 CENMAIVERRLKEMKIDYVKSRV-----------------EEGGINVDQLFFHDPDGSMIEICNC 79 (137)
Q Consensus 32 VedId~v~~rLke~GI~~~~~~~-----------------~~~g~g~r~vFf~DPDGn~IEI~e~ 79 (137)
+.|.+++.+.|++.|+.+..... ...|.+...+.|..|+..+|||...
T Consensus 118 i~Ne~el~~~l~~~~~~~v~~~~~s~~eqv~~~~~a~viig~hGs~l~n~~F~~~~s~viei~~~ 182 (206)
T PF04577_consen 118 ILNEDELLEILKKYGFEVVDPEDLSFEEQVKLFASAKVIIGPHGSALTNLLFMPPGSTVIEIFPP 182 (206)
T ss_pred CcCHHHHHHHHhhCCeEEEeCCCCCHHHHHHHhcCCCEEEecCchHhheeeecCCCCEEEEEeCC
Confidence 34788888888888888775320 1123446778888999999999644
No 229
>PRK03381 PII uridylyl-transferase; Provisional
Probab=25.03 E-value=2.8e+02 Score=26.44 Aligned_cols=51 Identities=20% Similarity=0.313 Sum_probs=37.7
Q ss_pred CceEEEEeCC----HHHHHHHHHHCCcEEeeeccc-cCCceEEEEEEEcCCCCEEE
Q 032603 25 DNHISFQCEN----MAIVERRLKEMKIDYVKSRVE-EGGINVDQLFFHDPDGSMIE 75 (137)
Q Consensus 25 ~~HIAF~Ved----Id~v~~rLke~GI~~~~~~~~-~~g~g~r~vFf~DPDGn~IE 75 (137)
..-+.+.+.| +..+...|.+.|+.+....+. .++.-...||+.|++|..++
T Consensus 707 ~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g~~~~ 762 (774)
T PRK03381 707 ATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPLA 762 (774)
T ss_pred eEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCCCCcCc
Confidence 3455666666 667778999999999986543 24444789999999999663
No 230
>PRK13577 diaminopimelate epimerase; Provisional
Probab=24.61 E-value=2.1e+02 Score=23.41 Aligned_cols=57 Identities=14% Similarity=-0.003 Sum_probs=34.5
Q ss_pred CCCCCceEEEEeCCHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEeecC
Q 032603 21 INPKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDV 81 (137)
Q Consensus 21 inp~~~HIAF~VedId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e~~~ 81 (137)
++.+..|+-+.|+|++.+. +...|-.+...+....+.++.++++.|+ ..|.+..|+.
T Consensus 154 vs~G~PH~Vv~V~~~~~~~--~~~~g~~~~~~~~fp~~~Nv~f~~~~~~--~~i~~R~~Er 210 (281)
T PRK13577 154 ATIGNPHCVVLLDEISEEL--ARELGPLIETHPRFPNRTNVQFLKVLDR--NTIQIEIWER 210 (281)
T ss_pred EECCCCcEEEEeCCcchhh--HHhhCccccccCCCCCCceEEEEEEccC--CeEEEEEECC
Confidence 5568889999999987542 3444544443322222444566666655 4677777765
No 231
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=24.02 E-value=2.2e+02 Score=22.99 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=17.2
Q ss_pred CCceEEEEEEEcCCCCEEEEEeec
Q 032603 57 GGINVDQLFFHDPDGSMIEICNCD 80 (137)
Q Consensus 57 ~g~g~r~vFf~DPDGn~IEI~e~~ 80 (137)
.|...|.+|+-||||..=-+.-++
T Consensus 120 ~g~a~R~~FIIDp~g~ir~~~v~~ 143 (194)
T COG0450 120 EGLALRGTFIIDPDGVIRHILVNP 143 (194)
T ss_pred CCcceeEEEEECCCCeEEEEEEec
Confidence 344589999999999865554443
No 232
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=23.87 E-value=1.5e+02 Score=22.99 Aligned_cols=49 Identities=16% Similarity=0.227 Sum_probs=31.6
Q ss_pred CceEEEEeCCHH---HHHHHHHHCCcEEeeeccccCCceEEEEEEE---cC---CCCEEEEEe
Q 032603 25 DNHISFQCENMA---IVERRLKEMKIDYVKSRVEEGGINVDQLFFH---DP---DGSMIEICN 78 (137)
Q Consensus 25 ~~HIAF~VedId---~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~---DP---DGn~IEI~e 78 (137)
.+|+|++|.+.+ ++.+-|.+.|--+.+..+ +| |-+++. -| -|-.|++++
T Consensus 2 ~DHialR~n~~~~A~~w~~~l~~~G~llSen~I--NG---RPI~l~~L~qPl~~~~~~I~cvE 59 (149)
T cd07268 2 IDHIALRVNENQTAERWKEGLLQCGELLSENEI--NG---RPIALIKLEKPLQFAGWSISIVE 59 (149)
T ss_pred CceEEEeeCCHHHHHHHHHHHHHhchhhhcccc--CC---eeEEEEEcCCCceeCCcEEEEEE
Confidence 479999999755 556677788877766543 33 333333 22 566777776
No 233
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=23.80 E-value=97 Score=29.35 Aligned_cols=17 Identities=18% Similarity=0.505 Sum_probs=13.8
Q ss_pred CHHHHHHHHHHCCcEEe
Q 032603 34 NMAIVERRLKEMKIDYV 50 (137)
Q Consensus 34 dId~v~~rLke~GI~~~ 50 (137)
|++.+++|++++|+..+
T Consensus 335 nl~~l~~ri~~~~~~~V 351 (672)
T PRK14581 335 NLDKLVQRISDLRVTHV 351 (672)
T ss_pred hHHHHHHHHHhcCCCEE
Confidence 68888899998888754
No 234
>PRK15000 peroxidase; Provisional
Probab=23.62 E-value=3.5e+02 Score=20.98 Aligned_cols=19 Identities=16% Similarity=0.219 Sum_probs=16.4
Q ss_pred eEEEEEEEcCCCCEEEEEe
Q 032603 60 NVDQLFFHDPDGSMIEICN 78 (137)
Q Consensus 60 g~r~vFf~DPDGn~IEI~e 78 (137)
..+..|+.||||....+..
T Consensus 124 ~~r~tfiID~~G~I~~~~~ 142 (200)
T PRK15000 124 ALRGSFLIDANGIVRHQVV 142 (200)
T ss_pred EEeEEEEECCCCEEEEEEe
Confidence 4799999999999888764
No 235
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=23.14 E-value=1.7e+02 Score=21.53 Aligned_cols=53 Identities=17% Similarity=0.229 Sum_probs=32.8
Q ss_pred CCceEEEEeC--------CHHHHHHHHHHCCcEEeeecccc------CC-ceEEEEEEEcCCCCEEEE
Q 032603 24 KDNHISFQCE--------NMAIVERRLKEMKIDYVKSRVEE------GG-INVDQLFFHDPDGSMIEI 76 (137)
Q Consensus 24 ~~~HIAF~Ve--------dId~v~~rLke~GI~~~~~~~~~------~g-~g~r~vFf~DPDGn~IEI 76 (137)
+..-+++.++ +.+++.+.+++.++++.--.... .+ .+...+|+.||+|..+-.
T Consensus 58 ~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~~~P~~~lid~~G~v~~~ 125 (171)
T cd02969 58 GVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAKAYGAACTPDFFLFDPDGKLVYR 125 (171)
T ss_pred CeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHHHcCCCcCCcEEEECCCCeEEEe
Confidence 3455677664 46788888888887643221111 11 125689999999987644
No 236
>COG5397 Uncharacterized conserved protein [Function unknown]
Probab=23.00 E-value=66 Score=27.91 Aligned_cols=50 Identities=14% Similarity=0.200 Sum_probs=32.9
Q ss_pred eEEEEeC-CHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEEe
Q 032603 27 HISFQCE-NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 78 (137)
Q Consensus 27 HIAF~Ve-dId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~e 78 (137)
-|+..++ ++..+..-|++-.-.+..-+... +. .+..-|+.+||+.||+.+
T Consensus 160 aiS~evdDsl~~il~lLr~~D~sFrpvPh~~-d~-ak~~~fqn~~~y~VefLT 210 (349)
T COG5397 160 AISREVDDSLPPILDLLRSVDPSFRPVPHRS-DP-AKSSAFQNRDGYRVEFLT 210 (349)
T ss_pred hhhHHhcccccHHHHHHhccCcccccCCccC-CC-ccceeeecCCCeEEEEec
Confidence 3444555 47788888887666665444221 22 255555999999999997
No 237
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=22.19 E-value=1.7e+02 Score=24.95 Aligned_cols=44 Identities=14% Similarity=0.313 Sum_probs=25.2
Q ss_pred HHHHHHHHHHCCcEEeeeccccCCc----eEEEEEEEcCCCCEEEEEe
Q 032603 35 MAIVERRLKEMKIDYVKSRVEEGGI----NVDQLFFHDPDGSMIEICN 78 (137)
Q Consensus 35 Id~v~~rLke~GI~~~~~~~~~~g~----g~r~vFf~DPDGn~IEI~e 78 (137)
.+++.+-.++.-|-+...+..++.- ..-.+|+.||||..|+..-
T Consensus 212 ~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~G 259 (280)
T KOG2792|consen 212 TEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYG 259 (280)
T ss_pred HHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhc
Confidence 3444444555555555433221111 1468999999999888764
No 238
>PF14044 NETI: NETI protein
Probab=22.18 E-value=2.3e+02 Score=18.66 Aligned_cols=41 Identities=27% Similarity=0.289 Sum_probs=28.5
Q ss_pred EEeC---CHHHHHHHHHHCCcEEeeeccccCCceEEEEEEEcCCCCEEEEE
Q 032603 30 FQCE---NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEIC 77 (137)
Q Consensus 30 F~Ve---dId~v~~rLke~GI~~~~~~~~~~g~g~r~vFf~DPDGn~IEI~ 77 (137)
|.|. .|+..++|+++.|+-.+++.. +=+|-..-+|..+|+.
T Consensus 2 FeV~enETI~~CL~RM~~eGY~PvrR~E-------kPiF~e~k~~g~~~~~ 45 (57)
T PF14044_consen 2 FEVEENETISDCLARMKKEGYMPVRRIE-------KPIFKEVKDGGKIEIE 45 (57)
T ss_pred eeccCCCcHHHHHHHHHHcCCCceeecc-------ccceEEecCCCceeEE
Confidence 5564 499999999999998887652 2355566666555553
No 239
>COG4009 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.01 E-value=1.3e+02 Score=21.44 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=23.5
Q ss_pred CCceEEEEe--CCHHHHHHHHHHCCcEEeee
Q 032603 24 KDNHISFQC--ENMAIVERRLKEMKIDYVKS 52 (137)
Q Consensus 24 ~~~HIAF~V--edId~v~~rLke~GI~~~~~ 52 (137)
...|+-|.- +++|.+.+.|+++|+++-..
T Consensus 49 ~Sy~V~Fl~~~~s~eev~~ele~mga~in~d 79 (88)
T COG4009 49 SSYYVVFLEEVESEEEVERELEDMGAEINRD 79 (88)
T ss_pred eeEEEEEEeccCCHHHHHHHHHHhCchhccc
Confidence 466887754 58999999999999998754
No 240
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.56 E-value=2.4e+02 Score=18.20 Aligned_cols=38 Identities=18% Similarity=0.342 Sum_probs=27.6
Q ss_pred HHHHHHHHHHCCcEEeeecc-ccCCceEEEEEEEcCC-CC
Q 032603 35 MAIVERRLKEMKIDYVKSRV-EEGGINVDQLFFHDPD-GS 72 (137)
Q Consensus 35 Id~v~~rLke~GI~~~~~~~-~~~g~g~r~vFf~DPD-Gn 72 (137)
+..+.+.|.+.|+.+..... ..++.-...+|+.|++ |.
T Consensus 14 l~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~ 53 (74)
T cd04925 14 LSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGA 53 (74)
T ss_pred HHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCC
Confidence 66788899999999987543 2234446788888988 65
No 241
>PRK13190 putative peroxiredoxin; Provisional
Probab=21.54 E-value=3.9e+02 Score=20.67 Aligned_cols=56 Identities=13% Similarity=0.109 Sum_probs=31.7
Q ss_pred CCceEEEEeCCHHHHHHHH---H-HCCc----EEeeecc----ccCC-------ceEEEEEEEcCCCCEEEEEee
Q 032603 24 KDNHISFQCENMAIVERRL---K-EMKI----DYVKSRV----EEGG-------INVDQLFFHDPDGSMIEICNC 79 (137)
Q Consensus 24 ~~~HIAF~VedId~v~~rL---k-e~GI----~~~~~~~----~~~g-------~g~r~vFf~DPDGn~IEI~e~ 79 (137)
+..-+++.+++.+.-.+++ + +.|+ ++..++. ..-| ...+..|+.||||....+..+
T Consensus 61 ~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~ 135 (202)
T PRK13190 61 GVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMIYY 135 (202)
T ss_pred CCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEEEe
Confidence 3456888888765433332 2 3453 3433221 0112 236999999999987766543
No 242
>TIGR00116 tsf translation elongation factor Ts. This protein is found in Bacteria, mitochondria, and chloroplasts.
Probab=21.36 E-value=99 Score=26.24 Aligned_cols=48 Identities=13% Similarity=0.104 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHCCcEEeeeccc-cCCceEEEEEEEcCCCCEEEEEeecC
Q 032603 34 NMAIVERRLKEMKIDYVKSRVE-EGGINVDQLFFHDPDGSMIEICNCDV 81 (137)
Q Consensus 34 dId~v~~rLke~GI~~~~~~~~-~~g~g~r~vFf~DPDGn~IEI~e~~~ 81 (137)
|+|..+++|+++|+.-...... ...-|.-.+++.+--|.++||...++
T Consensus 32 DiekAi~~LRkkG~akA~Kk~~R~a~EG~V~~~~~~~~~~ivElncETD 80 (290)
T TIGR00116 32 DFEKAIKNLRESGIAKAAKKADRVAAEGVIVLKSDGNKAVIVEVNSETD 80 (290)
T ss_pred CHHHHHHHHHHhchhHHHHhcccccCCcEEEEEEcCCEEEEEEEecCCc
Confidence 8999999999999876543321 11123456666444588999975443
No 243
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=20.95 E-value=4e+02 Score=20.60 Aligned_cols=54 Identities=13% Similarity=0.125 Sum_probs=38.2
Q ss_pred CCceEEEEeCCHHHHHHHHHHCCcEEee--ecc----------cc----CC---ceEEEEEEEcCCCCEEEEE
Q 032603 24 KDNHISFQCENMAIVERRLKEMKIDYVK--SRV----------EE----GG---INVDQLFFHDPDGSMIEIC 77 (137)
Q Consensus 24 ~~~HIAF~VedId~v~~rLke~GI~~~~--~~~----------~~----~g---~g~r~vFf~DPDGn~IEI~ 77 (137)
+...+++++++.++..+..++.|+++.- +.. .. ++ .-.|..|+.|+||....+.
T Consensus 64 ~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~ 136 (157)
T COG1225 64 GAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVW 136 (157)
T ss_pred CCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEe
Confidence 4568888999988888888888877542 110 00 00 1168999999999988887
No 244
>PF13756 Stimulus_sens_1: Stimulus-sensing domain
Probab=20.82 E-value=83 Score=22.60 Aligned_cols=14 Identities=29% Similarity=0.643 Sum_probs=12.2
Q ss_pred EEEEEEcCCCCEEE
Q 032603 62 DQLFFHDPDGSMIE 75 (137)
Q Consensus 62 r~vFf~DPDGn~IE 75 (137)
-.++++||||++|=
T Consensus 19 ~RARlyd~dG~Ll~ 32 (112)
T PF13756_consen 19 TRARLYDPDGNLLA 32 (112)
T ss_pred ceEEEECCCCCEEe
Confidence 48899999999885
No 245
>PF03432 Relaxase: Relaxase/Mobilisation nuclease domain ; InterPro: IPR005094 Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalysing trans-esterification [].
Probab=20.51 E-value=2.1e+02 Score=21.99 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=18.5
Q ss_pred EeCCHHHHHHHHHHCCcEEe
Q 032603 31 QCENMAIVERRLKEMKIDYV 50 (137)
Q Consensus 31 ~VedId~v~~rLke~GI~~~ 50 (137)
.+.+++.+.+.|++.|+++.
T Consensus 183 ~~~s~~~f~~~L~~~g~~v~ 202 (242)
T PF03432_consen 183 KSSSFEDFIERLEEKGIEVR 202 (242)
T ss_pred hCCCHHHHHHHHHHCCCEEE
Confidence 56799999999999999998
No 246
>PF08915 tRNA-Thr_ED: Archaea-specific editing domain of threonyl-tRNA synthetase; InterPro: IPR015011 Archaea-specific editing domain of threonyl-tRNA synthetase, with marked structural similarity to D-amino acids deacylases found in eubacteria and eukaryotes. This domain can bind D-amino acids, and ensures high fidelity during translation. It is especially responsible for removing incorrectly attached serine from tRNA-Thr. The domain forms a fold that can be defined as two layers of beta-sheets (a three-stranded sheet and a five-stranded sheet), with two alpha-helices located adjacent to the five-stranded sheet []. ; GO: 0004829 threonine-tRNA ligase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0005737 cytoplasm; PDB: 3PD4_B 3PD3_A 2HL0_A 2HL1_A 2HKZ_A 3PD5_B 2HL2_A 3PD2_B 1Y2Q_A.
Probab=20.47 E-value=2.4e+02 Score=21.58 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=14.3
Q ss_pred HHHHHHHHHHCCcEEeeec
Q 032603 35 MAIVERRLKEMKIDYVKSR 53 (137)
Q Consensus 35 Id~v~~rLke~GI~~~~~~ 53 (137)
+..++++|++.|+++.+.|
T Consensus 97 L~~le~~L~~~g~eV~raP 115 (138)
T PF08915_consen 97 LKKLEERLKSRGFEVYRAP 115 (138)
T ss_dssp HHHHHHHHHHTT-EEEE--
T ss_pred HHHHHHHHHhCCCeEEEeC
Confidence 6678899999999999987
Done!