BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032606
         (137 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3Q9L|A Chain A, The Structure Of The Dimeric E.Coli Mind-Atp Complex
 pdb|3Q9L|B Chain B, The Structure Of The Dimeric E.Coli Mind-Atp Complex
 pdb|3R9I|A Chain A, 2.6a Resolution Structure Of Mind Complexed With Mine
           (12-31) Peptide
 pdb|3R9I|B Chain B, 2.6a Resolution Structure Of Mind Complexed With Mine
           (12-31) Peptide
 pdb|3R9I|C Chain C, 2.6a Resolution Structure Of Mind Complexed With Mine
           (12-31) Peptide
 pdb|3R9I|D Chain D, 2.6a Resolution Structure Of Mind Complexed With Mine
           (12-31) Peptide
 pdb|3R9J|A Chain A, 4.3a Resolution Structure Of A Mind-Mine(I24n) Protein
           Complex
 pdb|3R9J|B Chain B, 4.3a Resolution Structure Of A Mind-Mine(I24n) Protein
           Complex
          Length = 260

 Score = 26.9 bits (58), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 8/76 (10%)

Query: 43  VSPNPKPSRYR----ILAMTVKRSPKRLKYSAPQFTKEGGLM--YVEADPSGADSWKLEP 96
           ++ NP+ S  R    IL +   +S +      P   KE  L+  Y     S  D   +E 
Sbjct: 141 ITTNPEVSSVRDSDRILGILASKSRRAENGEEP--IKEHLLLTRYNPGRVSRGDMLSMED 198

Query: 97  VVELLKEGAVGVIPTD 112
           V+E+L+   VGVIP D
Sbjct: 199 VLEILRIKLVGVIPED 214


>pdb|1WQL|A Chain A, Cumene Dioxygenase (Cuma1a2) From Pseudomonas Fluorescens
           Ip01
          Length = 459

 Score = 25.8 bits (55), Expect = 8.0,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 32/83 (38%)

Query: 34  APFPGRVSSVSPNPKPSRYRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPSGADSWK 93
           A   G +SS+ P    S+ ++ +   +   K   +    F  +  L+     P   D W 
Sbjct: 239 AHLSGVLSSLPPEMDLSQVKLPSSGNQFRAKWGGHGTGWFNDDFALLQAIMGPKVVDYWT 298

Query: 94  LEPVVELLKEGAVGVIPTDTLYA 116
             P  E  KE    V+P D + A
Sbjct: 299 KGPAAERAKERLGKVLPADRMVA 321


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.134    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,861,990
Number of Sequences: 62578
Number of extensions: 144606
Number of successful extensions: 329
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 328
Number of HSP's gapped (non-prelim): 4
length of query: 137
length of database: 14,973,337
effective HSP length: 89
effective length of query: 48
effective length of database: 9,403,895
effective search space: 451386960
effective search space used: 451386960
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)