BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032606
(137 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A5N3H9|ATPA_CLOK5 ATP synthase subunit alpha OS=Clostridium kluyveri (strain ATCC
8527 / DSM 555 / NCIMB 10680) GN=atpA PE=3 SV=1
Length = 504
Score = 32.3 bits (72), Expect = 1.0, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 52 YRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEA---DPSGADSWKLEPVVELLKEGAVGV 108
YR +++ ++R P+R Y F L+ A D G S P++E L
Sbjct: 270 YRAMSLLLRRPPRREAYPGDVFYLHSRLLERAAKLSDKLGGGSLTALPIIETLAGDVTAY 329
Query: 109 IPTDTLYAT 117
IPT+ + T
Sbjct: 330 IPTNVISIT 338
>sp|Q9Z689|ATPA_CLOAB ATP synthase subunit alpha OS=Clostridium acetobutylicum (strain
ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
GN=atpA PE=3 SV=1
Length = 505
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 52 YRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPS---GADSWKLEPVVELLKEGAVGV 108
YR +++ ++R P R Y F L+ A S G S P++E L G
Sbjct: 270 YRTMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSQKLGGGSITALPIIETLAGDVAGY 329
Query: 109 IPTDTLYAT 117
IPT+ + T
Sbjct: 330 IPTNVISIT 338
>sp|A5F2P8|SYM_VIBC3 Methionine--tRNA ligase OS=Vibrio cholerae serotype O1 (strain ATCC
39541 / Ogawa 395 / O395) GN=metG PE=3 SV=2
Length = 683
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 36 FPGRVSSVSPNPKPSRYRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPSGADSWKLE 95
F G S+ P +Y ++ +K P+++K+ EG M + A P G+D W LE
Sbjct: 620 FSGIKSAYQPEDLIGKYTVVVANLK--PRKMKFG----MSEG--MILAAGPGGSDLWLLE 671
Query: 96 P 96
P
Sbjct: 672 P 672
>sp|Q9KT69|SYM_VIBCH Methionine--tRNA ligase OS=Vibrio cholerae serotype O1 (strain ATCC
39315 / El Tor Inaba N16961) GN=metG PE=3 SV=2
Length = 683
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 36 FPGRVSSVSPNPKPSRYRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPSGADSWKLE 95
F G S+ P +Y ++ +K P+++K+ EG M + A P G+D W LE
Sbjct: 620 FSGIKSAYQPEDLIGKYTVVVANLK--PRKMKFG----MSEG--MILAAGPGGSDLWLLE 671
Query: 96 P 96
P
Sbjct: 672 P 672
>sp|B1JPY8|SYM_YERPY Methionine--tRNA ligase OS=Yersinia pseudotuberculosis serotype O:3
(strain YPIII) GN=metG PE=3 SV=1
Length = 675
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 40 VSSVSPNPKPSRYRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPSGADSWKLEP 96
+ S P+PK R+ M +P+++++ EG M + A P G+D + L P
Sbjct: 614 IRSAYPDPKALEGRMTVMVANLAPRKMRFG----VSEG--MVIAAGPGGSDIFLLSP 664
>sp|Q66C72|SYM_YERPS Methionine--tRNA ligase OS=Yersinia pseudotuberculosis serotype I
(strain IP32953) GN=metG PE=3 SV=1
Length = 675
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 40 VSSVSPNPKPSRYRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPSGADSWKLEP 96
+ S P+PK R+ M +P+++++ EG M + A P G+D + L P
Sbjct: 614 IRSAYPDPKALEGRMTVMVANLAPRKMRFG----VSEG--MVMTAGPGGSDIFLLSP 664
>sp|B9DX63|ATPA_CLOK1 ATP synthase subunit alpha OS=Clostridium kluyveri (strain NBRC
12016) GN=atpA PE=3 SV=1
Length = 504
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 52 YRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEA---DPSGADSWKLEPVVELLKEGAVGV 108
YR +++ ++R P R Y F L+ A D G S P++E L
Sbjct: 270 YRAMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDKLGGGSLTALPIIETLAGDVTAY 329
Query: 109 IPTDTLYAT 117
IPT+ + T
Sbjct: 330 IPTNVISIT 338
>sp|A4TKM9|SYM_YERPP Methionine--tRNA ligase OS=Yersinia pestis (strain Pestoides F)
GN=metG PE=3 SV=1
Length = 675
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 40 VSSVSPNPKPSRYRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPSGADSWKLEP 96
+ S P+PK R+ M +P+++++ EG M + A P G+D + L P
Sbjct: 614 IRSAYPDPKALEGRMTVMVANLAPRKMRFG----VSEG--MVMAAGPGGSDIFLLSP 664
>sp|Q1CGU4|SYM_YERPN Methionine--tRNA ligase OS=Yersinia pestis bv. Antiqua (strain
Nepal516) GN=metG PE=3 SV=1
Length = 675
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 40 VSSVSPNPKPSRYRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPSGADSWKLEP 96
+ S P+PK R+ M +P+++++ EG M + A P G+D + L P
Sbjct: 614 IRSAYPDPKALEGRMTVMVANLAPRKMRFG----VSEG--MVMAAGPGGSDIFLLSP 664
>sp|Q8ZG01|SYM_YERPE Methionine--tRNA ligase OS=Yersinia pestis GN=metG PE=3 SV=1
Length = 675
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 40 VSSVSPNPKPSRYRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPSGADSWKLEP 96
+ S P+PK R+ M +P+++++ EG M + A P G+D + L P
Sbjct: 614 IRSAYPDPKALEGRMTVMVANLAPRKMRFG----VSEG--MVMAAGPGGSDIFLLSP 664
>sp|B2JZK3|SYM_YERPB Methionine--tRNA ligase OS=Yersinia pseudotuberculosis serotype IB
(strain PB1/+) GN=metG PE=3 SV=1
Length = 675
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 40 VSSVSPNPKPSRYRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPSGADSWKLEP 96
+ S P+PK R+ M +P+++++ EG M + A P G+D + L P
Sbjct: 614 IRSAYPDPKALEGRMTVMVANLAPRKMRFG----VSEG--MVMAAGPGGSDIFLLSP 664
>sp|Q1C9T8|SYM_YERPA Methionine--tRNA ligase OS=Yersinia pestis bv. Antiqua (strain
Antiqua) GN=metG PE=3 SV=1
Length = 675
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 40 VSSVSPNPKPSRYRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPSGADSWKLEP 96
+ S P+PK R+ M +P+++++ EG M + A P G+D + L P
Sbjct: 614 IRSAYPDPKALEGRMTVMVANLAPRKMRFG----VSEG--MVMAAGPGGSDIFLLSP 664
>sp|A7FJJ6|SYM_YERP3 Methionine--tRNA ligase OS=Yersinia pseudotuberculosis serotype
O:1b (strain IP 31758) GN=metG PE=3 SV=1
Length = 675
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 40 VSSVSPNPKPSRYRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPSGADSWKLEP 96
+ S P+PK R+ M +P+++++ EG M + A P G+D + L P
Sbjct: 614 IRSAYPDPKALEGRMTVMVANLAPRKMRFG----VSEG--MVMAAGPGGSDIFLLSP 664
>sp|B0UE41|ATPA_METS4 ATP synthase subunit alpha OS=Methylobacterium sp. (strain 4-46)
GN=atpA PE=3 SV=1
Length = 509
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 52 YRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEA---DPSGADSWKLEPVVELLKEGAVGV 108
YR +++ ++R P R Y F L+ A D +GA S PV+E
Sbjct: 278 YRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMGDAAGAGSLTALPVIETQANDVSAY 337
Query: 109 IPTDTLYAT 117
IPT+ + T
Sbjct: 338 IPTNVISIT 346
>sp|B1LVH1|ATPA_METRJ ATP synthase subunit alpha OS=Methylobacterium radiotolerans
(strain ATCC 27329 / DSM 1819 / JCM 2831) GN=atpA PE=3
SV=1
Length = 510
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 52 YRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEA---DPSGADSWKLEPVVELLKEGAVGV 108
YR +++ ++R P R Y F L+ A D +GA S PV+E
Sbjct: 279 YRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMGDAAGAGSLTALPVIETQANDVSAY 338
Query: 109 IPTDTLYAT 117
IPT+ + T
Sbjct: 339 IPTNVISIT 347
>sp|Q2VZN0|ATPA_MAGSA ATP synthase subunit alpha OS=Magnetospirillum magneticum (strain
AMB-1 / ATCC 700264) GN=atpA PE=3 SV=1
Length = 509
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 52 YRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEA---DPSGADSWKLEPVVELLKEGAVGV 108
YR +++ ++R P R Y F L+ A D +GA S PV+E
Sbjct: 278 YRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMGDAAGAGSLTALPVIETQANDVSAY 337
Query: 109 IPTDTLYAT 117
IPT+ + T
Sbjct: 338 IPTNVISIT 346
>sp|Q6EW63|ATPA_NYMAL ATP synthase subunit alpha, chloroplastic OS=Nymphaea alba GN=atpA
PE=3 SV=1
Length = 507
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 52 YRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPS---GADSWKLEPVVELLKEGAVGV 108
YR +++ ++R P R Y F L+ A PS G S P+VE
Sbjct: 271 YRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKPSSRLGEGSMTALPIVETQSGDVSAY 330
Query: 109 IPTDTLYAT--AICLSRSVCNS 128
IPT+ + T I LS + N+
Sbjct: 331 IPTNVISITDGQIFLSADLFNA 352
>sp|A8HS15|ATPA_AZOC5 ATP synthase subunit alpha OS=Azorhizobium caulinodans (strain ATCC
43989 / DSM 5975 / ORS 571) GN=atpA PE=3 SV=1
Length = 510
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 52 YRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEA---DPSGADSWKLEPVVELLKEGAVGV 108
YR +++ ++R P R Y F L+ A D +GA S PV+E
Sbjct: 279 YRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLNDENGAGSLTALPVIETQANDVSAY 338
Query: 109 IPTDTLYAT 117
IPT+ + T
Sbjct: 339 IPTNVISIT 347
>sp|B8IN03|ATPA_METNO ATP synthase subunit alpha OS=Methylobacterium nodulans (strain
ORS2060 / LMG 21967) GN=atpA PE=3 SV=1
Length = 509
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 52 YRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEA---DPSGADSWKLEPVVELLKEGAVGV 108
YR +++ ++R P R Y F L+ A D +GA S PV+E
Sbjct: 278 YRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMGDAAGAGSLTALPVIETQANDVSAY 337
Query: 109 IPTDTLYAT 117
IPT+ + T
Sbjct: 338 IPTNVISIT 346
>sp|A1XFU0|ATPA_NUPAD ATP synthase subunit alpha, chloroplastic OS=Nuphar advena GN=atpA
PE=3 SV=1
Length = 507
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 52 YRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPS---GADSWKLEPVVELLKEGAVGV 108
YR +++ ++R P R Y F L+ A PS G S P+VE
Sbjct: 271 YRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKPSSRLGEGSMTALPIVETQSGDVSAY 330
Query: 109 IPTDTLYAT 117
IPT+ + T
Sbjct: 331 IPTNVISIT 339
>sp|Q09G61|ATPA_PLAOC ATP synthase subunit alpha, chloroplastic OS=Platanus occidentalis
GN=atpA PE=3 SV=1
Length = 507
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
Query: 45 PNPKPSRYRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPS---GADSWKLEPVVELL 101
P+ + YR +++ ++R P R Y F L+ A S G S P+VE
Sbjct: 264 PSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKSSSLLGEGSMTALPIVETQ 323
Query: 102 KEGAVGVIPTDTLYAT--AICLSRSVCNS 128
IPT+ + T I LS + NS
Sbjct: 324 SGDVSAYIPTNVISITDGQIFLSADLFNS 352
>sp|B8EQP9|ATPA_METSB ATP synthase subunit alpha OS=Methylocella silvestris (strain BL2 /
DSM 15510 / NCIMB 13906) GN=atpA PE=3 SV=1
Length = 509
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 52 YRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEA---DPSGADSWKLEPVVELLKEGAVGV 108
YR +++ ++R P R Y F L+ A D +GA S PV+E
Sbjct: 278 YRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLRDANGAGSLTALPVIETQANDVSAY 337
Query: 109 IPTDTLYAT 117
IPT+ + T
Sbjct: 338 IPTNVISIT 346
>sp|A4GYP3|ATPA_POPTR ATP synthase subunit alpha, chloroplastic OS=Populus trichocarpa
GN=atpA PE=3 SV=1
Length = 507
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 52 YRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPS---GADSWKLEPVVELLKEGAVGV 108
YR +++ ++R P R Y F L+ A PS G S P+VE
Sbjct: 271 YRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKPSSSLGEGSMTALPIVETQSGDVSAY 330
Query: 109 IPTDTLYAT 117
IPT+ + T
Sbjct: 331 IPTNVISIT 339
>sp|Q14FH2|ATPA_POPAL ATP synthase subunit alpha, chloroplastic OS=Populus alba GN=atpA
PE=3 SV=1
Length = 507
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 52 YRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPS---GADSWKLEPVVELLKEGAVGV 108
YR +++ ++R P R Y F L+ A PS G S P+VE
Sbjct: 271 YRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKPSSSLGEGSMTALPIVETQSGDVSAY 330
Query: 109 IPTDTLYAT 117
IPT+ + T
Sbjct: 331 IPTNVISIT 339
>sp|B6EIY5|SYM_ALISL Methionine--tRNA ligase OS=Aliivibrio salmonicida (strain LFI1238)
GN=metG PE=3 SV=1
Length = 686
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 36 FPGRVSSVSPNPKPSRYRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPSGADSWKLE 95
F G S+ +P ++ ++ +K P+++K+ EG M + A P G D W LE
Sbjct: 623 FSGIKSAYTPEELVGKHTVMVANLK--PRKMKFG----MSEG--MILAAGPGGKDLWILE 674
Query: 96 P 96
P
Sbjct: 675 P 675
>sp|Q09FX6|ATPA_NANDO ATP synthase subunit alpha, chloroplastic OS=Nandina domestica
GN=atpA PE=3 SV=1
Length = 507
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
Query: 45 PNPKPSRYRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPS---GADSWKLEPVVELL 101
P+ + YR +++ ++R P R Y F L+ A S G S P+VE
Sbjct: 264 PSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKSSSRLGEGSMTALPIVETQ 323
Query: 102 KEGAVGVIPTDTLYAT--AICLSRSVCNS 128
IPT+ + T I LS + NS
Sbjct: 324 AGDVSAYIPTNVISITDGQIFLSADLFNS 352
>sp|Q7MM14|SYM_VIBVY Methionine--tRNA ligase OS=Vibrio vulnificus (strain YJ016) GN=metG
PE=3 SV=1
Length = 690
Score = 29.6 bits (65), Expect = 5.0, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 36 FPGRVSSVSPNPKPSRYRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPSGADSWKLE 95
F G ++ +P +Y ++ +K P+++K+ EG M + A P G D W LE
Sbjct: 627 FSGIKAAYNPEDLVGKYTVVVANLK--PRKMKFG----MSEG--MILAAGPGGKDLWILE 678
Query: 96 P 96
P
Sbjct: 679 P 679
>sp|Q8D8F2|SYM_VIBVU Methionine--tRNA ligase OS=Vibrio vulnificus (strain CMCP6) GN=metG
PE=3 SV=2
Length = 690
Score = 29.6 bits (65), Expect = 5.0, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 36 FPGRVSSVSPNPKPSRYRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPSGADSWKLE 95
F G ++ +P +Y ++ +K P+++K+ EG M + A P G D W LE
Sbjct: 627 FSGIKAAYNPEDLVGKYTVVVANLK--PRKMKFG----MSEG--MILAAGPGGKDLWILE 678
Query: 96 P 96
P
Sbjct: 679 P 679
>sp|Q6LSZ7|SYM_PHOPR Methionine--tRNA ligase OS=Photobacterium profundum GN=metG PE=3
SV=1
Length = 680
Score = 29.6 bits (65), Expect = 5.0, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 36 FPGRVSSVSPNPKPSRYRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPSGADSWKLE 95
F G S+ +P ++ ++ +K P+++K+ EG M + A P G D W LE
Sbjct: 617 FSGIKSAYTPEELVGKHTVMVANLK--PRKMKFG----MSEG--MILAAGPGGKDLWILE 668
Query: 96 P 96
P
Sbjct: 669 P 669
>sp|Q0AJD9|MURD_NITEC UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Nitrosomonas
eutropha (strain C91) GN=murD PE=3 SV=1
Length = 470
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 27 EAATRRAAPFPGRVSSVSPNPKPSRYRILAMTVKRSPKRLKY--SAPQFTKEGGLMYVEA 84
E A +A FP +S R+ AM + S K+L + SAP F E G++
Sbjct: 207 EYAAAKARIFPDPHNSCVQVLNREDARVYAMAHENS-KQLTFGLSAPAFDDEFGVL---- 261
Query: 85 DPSGADSWKLEPVVELLKEGAVGV 108
PSG+D W + L+K + V
Sbjct: 262 -PSGSDLWLAQGTTRLMKVSELAV 284
>sp|Q6NHT1|ATPA_CORDI ATP synthase subunit alpha OS=Corynebacterium diphtheriae (strain
ATCC 700971 / NCTC 13129 / Biotype gravis) GN=atpA PE=3
SV=1
Length = 542
Score = 28.9 bits (63), Expect = 8.9, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 52 YRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEA---DPSGADSWKLEPVVELLKEGAVGV 108
YR +++ ++R P R Y F L+ A D GA S P++E
Sbjct: 281 YRAISLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDDMGAGSMTALPIIETKANDVSAF 340
Query: 109 IPTDTLYAT 117
IPT+ + T
Sbjct: 341 IPTNVISIT 349
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,069,678
Number of Sequences: 539616
Number of extensions: 2144613
Number of successful extensions: 5602
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 5600
Number of HSP's gapped (non-prelim): 40
length of query: 137
length of database: 191,569,459
effective HSP length: 102
effective length of query: 35
effective length of database: 136,528,627
effective search space: 4778501945
effective search space used: 4778501945
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)