Query 032606
Match_columns 137
No_of_seqs 129 out of 1102
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 05:14:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032606.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032606hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1k7j_A Protein YCIO, protein T 99.6 1.6E-16 5.3E-21 124.3 6.1 56 80-135 3-59 (206)
2 1jcu_A Conserved protein MTH16 99.6 7.8E-17 2.7E-21 126.4 4.3 57 79-135 1-58 (208)
3 2eqa_A Hypothetical protein ST 99.6 2E-15 6.8E-20 128.1 6.0 56 80-135 3-59 (352)
4 1hru_A YRDC gene product; prot 99.5 5E-15 1.7E-19 114.0 3.1 50 86-135 2-52 (188)
5 3l7v_A Putative uncharacterize 99.1 2E-11 6.9E-16 101.9 4.5 43 92-135 44-87 (295)
6 3vth_A Hydrogenase maturation 99.1 1.3E-10 4.6E-15 106.5 6.4 49 85-134 197-246 (761)
7 3ttc_A HYPF, transcriptional r 99.0 1.8E-10 6.2E-15 104.4 5.2 45 91-135 111-156 (657)
8 4g9i_A Hydrogenase maturation 98.7 1.8E-08 6.1E-13 92.4 5.7 44 91-134 200-244 (772)
9 1u7i_A Hypothetical protein; s 44.5 20 0.00068 24.2 3.2 33 80-116 82-115 (136)
10 2fca_A TRNA (guanine-N(7)-)-me 37.1 34 0.0012 24.9 3.7 22 92-113 134-155 (213)
11 1u6l_A Hypothetical protein; s 37.0 23 0.00079 24.4 2.7 27 90-116 90-117 (149)
12 1tsj_A Conserved hypothetical 34.0 33 0.0011 24.0 3.1 29 90-118 82-111 (139)
13 3lzd_A DPH2; diphthamide biosy 33.7 33 0.0011 29.3 3.5 34 95-129 71-105 (378)
14 1yzh_A TRNA (guanine-N(7)-)-me 30.5 43 0.0015 23.9 3.3 22 92-113 137-158 (214)
15 1tks_A 3,4-dihydroxy-2-butanon 28.5 98 0.0034 24.5 5.3 40 91-130 5-51 (204)
16 2x5n_A SPRPN10, 26S proteasome 28.3 95 0.0033 22.9 5.0 47 80-131 110-157 (192)
17 3dr5_A Putative O-methyltransf 28.1 18 0.00063 26.9 1.0 42 80-121 131-173 (221)
18 3duw_A OMT, O-methyltransferas 26.1 37 0.0013 24.2 2.3 41 81-121 136-177 (223)
19 2vdv_E TRNA (guanine-N(7)-)-me 25.7 39 0.0013 24.9 2.4 22 92-113 154-175 (246)
20 1snn_A DHBP synthase, 3,4-dihy 25.7 99 0.0034 24.9 4.9 38 93-130 3-47 (227)
21 3mio_A DHBP synthase, 3,4-dihy 24.2 1.5E+02 0.005 23.5 5.6 39 92-130 5-50 (206)
22 3tfw_A Putative O-methyltransf 24.0 41 0.0014 25.0 2.2 41 81-121 139-180 (248)
23 1g57_A DHBP synthase, 3,4-dihy 23.2 1.2E+02 0.004 24.2 4.8 40 91-130 13-59 (217)
24 1j5w_A Glycyl-tRNA synthetase 21.7 51 0.0017 27.9 2.5 86 18-119 45-139 (298)
25 3rf1_A Glycyl-tRNA synthetase 21.2 50 0.0017 28.0 2.4 86 18-119 57-151 (311)
26 3dxy_A TRNA (guanine-N(7)-)-me 20.7 25 0.00084 26.1 0.4 21 93-113 132-152 (218)
27 4fzv_A Putative methyltransfer 20.3 17 0.00058 30.3 -0.6 35 93-131 266-301 (359)
No 1
>1k7j_A Protein YCIO, protein TF1; structural genomics, X-RAY crystallography, putative translation factor, PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: d.115.1.1 PDB: 1kk9_A
Probab=99.64 E-value=1.6e-16 Score=124.31 Aligned_cols=56 Identities=20% Similarity=0.336 Sum_probs=53.4
Q ss_pred EEEEecCCCCCcccHHHHHHHHhcCCeEEeccCCeeEeeecC-CHHHHHHHHhcCCC
Q 032606 80 MYVEADPSGADSWKLEPVVELLKEGAVGVIPTDTLYATAICL-SRSVCNSLRFEEPF 135 (137)
Q Consensus 80 ~~levdp~~pd~~~l~~aa~~Lr~GgVVa~PTDTVYGLgcda-n~~AVerIy~I~~~ 135 (137)
+++++|+++++.+.++++++.|++||||+|||||+|||+||+ |++|++|||++|+-
T Consensus 3 ~~~~~~~~~~~~~~i~~a~~~L~~G~iva~pTdtvygL~~da~n~~Av~rl~~~K~R 59 (206)
T 1k7j_A 3 QFFYIHPDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQL 59 (206)
T ss_dssp EEEECCSSSCCHHHHHHHHHHHHTTCCEEEEETTEEEEEEETTCHHHHHHHHHHHTC
T ss_pred ceEecCCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEEEEeCCCHHHHHHHHHHcCC
Confidence 578999999999999999999999999999999999999999 99999999999863
No 2
>1jcu_A Conserved protein MTH1692; mixed alpha-beta structure, structural genomics; NMR {Methanothermobacterthermautotrophicus} SCOP: d.115.1.1
Probab=99.64 E-value=7.8e-17 Score=126.39 Aligned_cols=57 Identities=16% Similarity=0.256 Sum_probs=53.8
Q ss_pred eEEEEecCCCCCcccHHHHHHHHhcCCeEEeccCCeeEeeecC-CHHHHHHHHhcCCC
Q 032606 79 LMYVEADPSGADSWKLEPVVELLKEGAVGVIPTDTLYATAICL-SRSVCNSLRFEEPF 135 (137)
Q Consensus 79 ~~~levdp~~pd~~~l~~aa~~Lr~GgVVa~PTDTVYGLgcda-n~~AVerIy~I~~~ 135 (137)
|+++++++++++.+.+++++++|++||||+|||||+|||+||+ |++|++|||++|+-
T Consensus 1 ~~~~~~~~~~~~~~~i~~a~~~L~~G~vVa~pTdtvygL~~da~n~~Av~rl~~~K~R 58 (208)
T 1jcu_A 1 MLIRKITRKNPSPDVLEEAISVMEGGGIVIYPTDTIYGLGVNALDEDAVRRLFRVKGR 58 (208)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHTTCEEECCCSSSCEEEEETTSHHHHHHHHHHCCS
T ss_pred CeEEEecCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEEEEeCCCHHHHHHHHHHhCC
Confidence 4677899999999999999999999999999999999999999 99999999999963
No 3
>2eqa_A Hypothetical protein ST1526; YRDC/RIBB fold, YRDC domain, SUA5 domain, structural genomics, NPPSFA; HET: AMP; 1.80A {Sulfolobus tokodaii} PDB: 3aje_A* 4e1b_A*
Probab=99.57 E-value=2e-15 Score=128.13 Aligned_cols=56 Identities=16% Similarity=0.317 Sum_probs=53.1
Q ss_pred EEEEecCCCCCcccHHHHHHHHhcCCeEEeccCCeeEeeecC-CHHHHHHHHhcCCC
Q 032606 80 MYVEADPSGADSWKLEPVVELLKEGAVGVIPTDTLYATAICL-SRSVCNSLRFEEPF 135 (137)
Q Consensus 80 ~~levdp~~pd~~~l~~aa~~Lr~GgVVa~PTDTVYGLgcda-n~~AVerIy~I~~~ 135 (137)
.+++++|+|++.+.+++++++|++||+|+||||||||||||+ |++||+|||++|+-
T Consensus 3 ~~~~i~~~~~~~~~i~~aa~~L~~G~iVa~PTeTvYGLg~da~n~~AV~rI~~~K~R 59 (352)
T 2eqa_A 3 QIIKIDPLNPEIDKIKIAADVIRNGGTVAFPTETVYGLGANAFDGNACLKIFQAKNR 59 (352)
T ss_dssp EEEECCSSSCCHHHHHHHHHHHHTTCCEEECCSSSCEEEEETTCHHHHHHHHHHHTC
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHcCCEEEEECCCEeEEEEeCCCHHHHHHHHHHcCC
Confidence 477999999999999999999999999999999999999999 99999999999863
No 4
>1hru_A YRDC gene product; protein folding, structural genomics, RNA, SUA5, PSI, protein structure initiative, midwest center for structural genomics; 2.00A {Escherichia coli} SCOP: d.115.1.1
Probab=99.51 E-value=5e-15 Score=113.98 Aligned_cols=50 Identities=14% Similarity=0.134 Sum_probs=45.8
Q ss_pred CCCCCcccHHHHHHHHhcCCeEEeccCCeeEeeecC-CHHHHHHHHhcCCC
Q 032606 86 PSGADSWKLEPVVELLKEGAVGVIPTDTLYATAICL-SRSVCNSLRFEEPF 135 (137)
Q Consensus 86 p~~pd~~~l~~aa~~Lr~GgVVa~PTDTVYGLgcda-n~~AVerIy~I~~~ 135 (137)
+++++.+.+++++++|++||||+|||||+|||+||+ |++|++|||++|+-
T Consensus 2 ~~~~~~~~i~~a~~~L~~G~iva~ptdt~ygL~~da~~~~av~rl~~~K~R 52 (188)
T 1hru_A 2 NNNLQRDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQR 52 (188)
T ss_dssp -CHHHHHHHHHHHHHHHTTCCEEEECSSSEEEEECTTCHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEeCCCEeeeEEcCCCHHHHHHHHHHcCC
Confidence 456777889999999999999999999999999999 99999999999863
No 5
>3l7v_A Putative uncharacterized protein SMU.1377C; transcription; 2.26A {Streptococcus mutans}
Probab=99.15 E-value=2e-11 Score=101.94 Aligned_cols=43 Identities=21% Similarity=0.081 Sum_probs=40.0
Q ss_pred ccHHHHHHHHh-cCCeEEeccCCeeEeeecCCHHHHHHHHhcCCC
Q 032606 92 WKLEPVVELLK-EGAVGVIPTDTLYATAICLSRSVCNSLRFEEPF 135 (137)
Q Consensus 92 ~~l~~aa~~Lr-~GgVVa~PTDTVYGLgcdan~~AVerIy~I~~~ 135 (137)
..+++|+++|+ +||||+|||||+|||+| .|++||+|||++|+-
T Consensus 44 ~~i~~Aa~~L~~~GgIVa~PTdTvYGL~c-~n~~AV~rL~~iK~R 87 (295)
T 3l7v_A 44 NLSQEGFEIVKGEGGVIVCPTKVGYIIMT-SDKKGLERKFEAKKR 87 (295)
T ss_dssp SCCHHHHHHHHSTTCEEEEEETTEEEEEE-SSHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHCCCEEEEECCCEEEEEE-cCHHHHHHHHHHcCC
Confidence 35889999999 99999999999999999 799999999999864
No 6
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=99.06 E-value=1.3e-10 Score=106.50 Aligned_cols=49 Identities=18% Similarity=0.125 Sum_probs=44.5
Q ss_pred cCCCCCcccHHHHHHHHhcCCeEEeccCCeeEeeecC-CHHHHHHHHhcCC
Q 032606 85 DPSGADSWKLEPVVELLKEGAVGVIPTDTLYATAICL-SRSVCNSLRFEEP 134 (137)
Q Consensus 85 dp~~pd~~~l~~aa~~Lr~GgVVa~PTDTVYGLgcda-n~~AVerIy~I~~ 134 (137)
+.++ +...+++++++|++||||+|||||+|||+||+ |++||+|||++|+
T Consensus 197 ~~~~-~~~~i~~aa~~L~~G~IVa~pt~t~YgL~cda~n~~AV~rL~~~K~ 246 (761)
T 3vth_A 197 GEGC-FDDEIKCVAKALKEGKIVAIKGIGGFHLAVNALDDEAVATLRRRKK 246 (761)
T ss_dssp SSCC-CSCHHHHHHHHHHTTCCEEEECSSSEEEECBTTCHHHHHHHHHHHT
T ss_pred CCCC-chHHHHHHHHHHHcCCEEEEECCcEEEEEecCCCHHHHHHHHHHhC
Confidence 4444 55679999999999999999999999999999 9999999999986
No 7
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=99.02 E-value=1.8e-10 Score=104.41 Aligned_cols=45 Identities=18% Similarity=0.111 Sum_probs=42.2
Q ss_pred cccHHHHHHHHhcCCeEEeccCCeeEeeecC-CHHHHHHHHhcCCC
Q 032606 91 SWKLEPVVELLKEGAVGVIPTDTLYATAICL-SRSVCNSLRFEEPF 135 (137)
Q Consensus 91 ~~~l~~aa~~Lr~GgVVa~PTDTVYGLgcda-n~~AVerIy~I~~~ 135 (137)
.+.+++++++|++||||+|||||+|||+||+ |++||+|||++|+-
T Consensus 111 ~~~i~~aa~~L~~G~IVa~pt~ggYgL~cda~n~~AV~rL~~~K~R 156 (657)
T 3ttc_A 111 EAALQAAIAQLKMGNIVAIKGIGGFHLACDARNSNAVATLRARKHR 156 (657)
T ss_dssp HHHHHHHHHHHHTTCCEEEECSSSEEEEEETTCHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHcCCEEEEECCceeEEEeecCCHHHHHHHHHHhCC
Confidence 3469999999999999999999999999999 99999999999973
No 8
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=98.67 E-value=1.8e-08 Score=92.39 Aligned_cols=44 Identities=20% Similarity=0.070 Sum_probs=41.7
Q ss_pred cccHHHHHHHHhcCCeEEeccCCeeEeeecC-CHHHHHHHHhcCC
Q 032606 91 SWKLEPVVELLKEGAVGVIPTDTLYATAICL-SRSVCNSLRFEEP 134 (137)
Q Consensus 91 ~~~l~~aa~~Lr~GgVVa~PTDTVYGLgcda-n~~AVerIy~I~~ 134 (137)
...+++++++|++|++|++||+|+|+|+||+ |++||++|++.|+
T Consensus 200 ~~~i~~a~~~l~~G~iva~kg~ggy~L~cda~n~~aV~~lr~~K~ 244 (772)
T 4g9i_A 200 GDPLRKAAELIDKGYIVAIKGIGGIHLACDAANEEVVAELRRRTF 244 (772)
T ss_dssp THHHHHHHHHHTTSCCEEECCSSSBEEECCTTCHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHcCCEEEEecCCeeEEEEecCCHHHHHHHHHhhC
Confidence 3479999999999999999999999999999 9999999999986
No 9
>1u7i_A Hypothetical protein; structural genomics, PA1358, PSI, PROT structure initiative; HET: MSE; 1.40A {Pseudomonas aeruginosa} SCOP: d.32.1.7
Probab=44.47 E-value=20 Score=24.18 Aligned_cols=33 Identities=18% Similarity=0.438 Sum_probs=22.6
Q ss_pred EEEEecCCCCCcccHHHHHHHHhcCCeEEe-ccCCeeE
Q 032606 80 MYVEADPSGADSWKLEPVVELLKEGAVGVI-PTDTLYA 116 (137)
Q Consensus 80 ~~levdp~~pd~~~l~~aa~~Lr~GgVVa~-PTDTVYG 116 (137)
+++.++ |...++.+.+.|..||-++. |+|+-||
T Consensus 82 l~~~v~----d~~evd~~~~~l~~Gg~v~~p~~~~~~G 115 (136)
T 1u7i_A 82 FFVDCE----SNAQIERLAEALSDGGKALMPLGDYGFS 115 (136)
T ss_dssp EEEECC----CHHHHHHHHHHHHTTSEEEEEEECCSSS
T ss_pred EEEEcC----CHHHHHHHHHHHHcCCEEecccccCCCc
Confidence 445543 44458888888878887665 5888777
No 10
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=37.14 E-value=34 Score=24.87 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=19.0
Q ss_pred ccHHHHHHHHhcCCeEEeccCC
Q 032606 92 WKLEPVVELLKEGAVGVIPTDT 113 (137)
Q Consensus 92 ~~l~~aa~~Lr~GgVVa~PTDT 113 (137)
..++++.+.|+.||.+++-||.
T Consensus 134 ~~l~~~~~~LkpgG~l~~~td~ 155 (213)
T 2fca_A 134 HFLKKYEEVMGKGGSIHFKTDN 155 (213)
T ss_dssp HHHHHHHHHHTTSCEEEEEESC
T ss_pred HHHHHHHHHcCCCCEEEEEeCC
Confidence 4588899999999999998864
No 11
>1u6l_A Hypothetical protein; structural genomics, PSI, protein STRU initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.81A {Pseudomonas aeruginosa} SCOP: d.32.1.7
Probab=37.05 E-value=23 Score=24.43 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=19.9
Q ss_pred CcccHHHHHHHHhcCCeEEe-ccCCeeE
Q 032606 90 DSWKLEPVVELLKEGAVGVI-PTDTLYA 116 (137)
Q Consensus 90 d~~~l~~aa~~Lr~GgVVa~-PTDTVYG 116 (137)
+...++.+.+.|+.||-++. |+|+-||
T Consensus 90 d~~evd~~~~~l~~Gg~i~~p~~~~~wG 117 (149)
T 1u6l_A 90 SKAEAERLFNALAEGGSVQMPLGPTFWA 117 (149)
T ss_dssp SHHHHHHHHHHHHTTSEEEEEEEEETTE
T ss_pred CHHHHHHHHHHHHCCCEEeecccccCcc
Confidence 33457788888889987765 5778777
No 12
>1tsj_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, nysgxrc; 2.60A {Staphylococcus aureus subsp} SCOP: d.32.1.7
Probab=33.97 E-value=33 Score=23.95 Aligned_cols=29 Identities=17% Similarity=0.171 Sum_probs=20.7
Q ss_pred CcccHHHHHHHHhcCCeEEe-ccCCeeEee
Q 032606 90 DSWKLEPVVELLKEGAVGVI-PTDTLYATA 118 (137)
Q Consensus 90 d~~~l~~aa~~Lr~GgVVa~-PTDTVYGLg 118 (137)
+...++.+.+.|.+||-++. |+|+.||--
T Consensus 82 d~~evd~~~~~l~~G~~v~~p~~~~~wG~~ 111 (139)
T 1tsj_A 82 DTIEMERLFNGLKDEGAILMPKTNMPPYRE 111 (139)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEEEEETTEEE
T ss_pred CHHHHHHHHHHHhCCCEEeecccccCCCce
Confidence 34458888888888887665 578887743
No 13
>3lzd_A DPH2; diphthamide biosynthesis, radical SAM enzyme, gene triplicat iron-sulfur cluster, biosynthetic protein; 2.10A {Pyrococcus horikoshii} PDB: 3lzc_A
Probab=33.66 E-value=33 Score=29.29 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=23.1
Q ss_pred HHHHHHHhc-CCeEEeccCCeeEeeecCCHHHHHHH
Q 032606 95 EPVVELLKE-GAVGVIPTDTLYATAICLSRSVCNSL 129 (137)
Q Consensus 95 ~~aa~~Lr~-GgVVa~PTDTVYGLgcdan~~AVerI 129 (137)
..+++.|++ |-=+++=-||.|| +|+.|..+.+.+
T Consensus 71 ~~Ia~~L~~~~~e~~IlgDttYG-ACCVDe~aA~~v 105 (378)
T 3lzd_A 71 EELAGFLEENNIEVFLHGEINYG-ACDPADREAKLV 105 (378)
T ss_dssp HHHHHHHHTTTCEEEEECSCCCC-TTSCCHHHHHHT
T ss_pred HHHHHHHhhcCceEEEEcCCccc-CcccCHHHHhhc
Confidence 346667764 5557778999999 777755555543
No 14
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=30.48 E-value=43 Score=23.87 Aligned_cols=22 Identities=23% Similarity=0.141 Sum_probs=18.8
Q ss_pred ccHHHHHHHHhcCCeEEeccCC
Q 032606 92 WKLEPVVELLKEGAVGVIPTDT 113 (137)
Q Consensus 92 ~~l~~aa~~Lr~GgVVa~PTDT 113 (137)
..++++.+.|+.||++++-||.
T Consensus 137 ~~l~~~~~~LkpgG~l~~~~~~ 158 (214)
T 1yzh_A 137 TFLDTFKRILPENGEIHFKTDN 158 (214)
T ss_dssp HHHHHHHHHSCTTCEEEEEESC
T ss_pred HHHHHHHHHcCCCcEEEEEeCC
Confidence 4788889999999999997764
No 15
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=28.51 E-value=98 Score=24.49 Aligned_cols=40 Identities=20% Similarity=0.117 Sum_probs=30.5
Q ss_pred cccHHHHHHHHhcCCeEEeccC------CeeEeeecC-CHHHHHHHH
Q 032606 91 SWKLEPVVELLKEGAVGVIPTD------TLYATAICL-SRSVCNSLR 130 (137)
Q Consensus 91 ~~~l~~aa~~Lr~GgVVa~PTD------TVYGLgcda-n~~AVerIy 130 (137)
...+++|++.|++|+.|++=.| .-.-+++.. .++.++-+.
T Consensus 5 ~~~ie~Ai~~lr~G~~Viv~DdedREnEgDli~aAe~~T~e~i~fm~ 51 (204)
T 1tks_A 5 FTPIEEALEAYKNGEFLIVMDDEDRENEGDLIMAAELITQEKMAFLV 51 (204)
T ss_dssp SCCHHHHHHHHHTTCCEEEESSSCTTCBCEEEEEGGGCCHHHHHHHH
T ss_pred hhhHHHHHHHHHCCCeEEEEeCCCCCCCEEEEEEhhhCCHHHHHHHH
Confidence 3469999999999999998776 445566666 777776654
No 16
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=28.31 E-value=95 Score=22.94 Aligned_cols=47 Identities=11% Similarity=0.043 Sum_probs=31.8
Q ss_pred EEEEecCCCCCcccHHHHHHHHhcCCeEEeccCCeeEeeecC-CHHHHHHHHh
Q 032606 80 MYVEADPSGADSWKLEPVVELLKEGAVGVIPTDTLYATAICL-SRSVCNSLRF 131 (137)
Q Consensus 80 ~~levdp~~pd~~~l~~aa~~Lr~GgVVa~PTDTVYGLgcda-n~~AVerIy~ 131 (137)
+++-.++...++..+.++++.+++.|+-++ +.|+|..- |.+ ++.+.+
T Consensus 110 iil~~~~~~~~~~~~~~~a~~lk~~gi~v~----~Ig~G~~~~~~~-l~~la~ 157 (192)
T 2x5n_A 110 VAFVGSPIVEDEKNLIRLAKRMKKNNVAID----IIHIGELQNESA-LQHFID 157 (192)
T ss_dssp EEEECSCCSSCHHHHHHHHHHHHHTTEEEE----EEEESCC---CH-HHHHHH
T ss_pred EEEEECCCCCCchhHHHHHHHHHHCCCEEE----EEEeCCCCccHH-HHHHHH
Confidence 333345444456678889999999999887 67888776 655 777654
No 17
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=28.11 E-value=18 Score=26.86 Aligned_cols=42 Identities=21% Similarity=0.108 Sum_probs=28.5
Q ss_pred EEEEecCCCCCc-ccHHHHHHHHhcCCeEEeccCCeeEeeecC
Q 032606 80 MYVEADPSGADS-WKLEPVVELLKEGAVGVIPTDTLYATAICL 121 (137)
Q Consensus 80 ~~levdp~~pd~-~~l~~aa~~Lr~GgVVa~PTDTVYGLgcda 121 (137)
-+|.++....+. ..++++.+.|+.||++++-.=...|..++.
T Consensus 131 D~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~dn~~~~g~v~~~ 173 (221)
T 3dr5_A 131 QLVFGQVSPMDLKALVDAAWPLLRRGGALVLADALLDGTIADQ 173 (221)
T ss_dssp EEEEECCCTTTHHHHHHHHHHHEEEEEEEEETTTTGGGTCSCS
T ss_pred CeEEEcCcHHHHHHHHHHHHHHcCCCcEEEEeCCCCCCcCCCC
Confidence 355566655543 368889999999999998443334555555
No 18
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=26.13 E-value=37 Score=24.15 Aligned_cols=41 Identities=15% Similarity=0.062 Sum_probs=26.9
Q ss_pred EEEecCCCCC-cccHHHHHHHHhcCCeEEeccCCeeEeeecC
Q 032606 81 YVEADPSGAD-SWKLEPVVELLKEGAVGVIPTDTLYATAICL 121 (137)
Q Consensus 81 ~levdp~~pd-~~~l~~aa~~Lr~GgVVa~PTDTVYGLgcda 121 (137)
+|.++...++ ...++.+.+.|+.||++++-.=...|...+.
T Consensus 136 ~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~ 177 (223)
T 3duw_A 136 FIFIDADKQNNPAYFEWALKLSRPGTVIIGDNVVREGEVIDN 177 (223)
T ss_dssp EEEECSCGGGHHHHHHHHHHTCCTTCEEEEESCSGGGGGGCT
T ss_pred EEEEcCCcHHHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCc
Confidence 3445554333 3467888999999999988655555555544
No 19
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=25.68 E-value=39 Score=24.87 Aligned_cols=22 Identities=36% Similarity=0.261 Sum_probs=18.7
Q ss_pred ccHHHHHHHHhcCCeEEeccCC
Q 032606 92 WKLEPVVELLKEGAVGVIPTDT 113 (137)
Q Consensus 92 ~~l~~aa~~Lr~GgVVa~PTDT 113 (137)
..+.++.+.|+.||++++-||.
T Consensus 154 ~~l~~~~~~LkpgG~l~~~td~ 175 (246)
T 2vdv_E 154 TLLSEYAYVLKEGGVVYTITDV 175 (246)
T ss_dssp HHHHHHHHHEEEEEEEEEEESC
T ss_pred HHHHHHHHHcCCCCEEEEEecc
Confidence 5788899999999999997653
No 20
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A
Probab=25.67 E-value=99 Score=24.86 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=26.3
Q ss_pred cHHHHHHHHhcCCeEEeccC------CeeEeeecC-CHHHHHHHH
Q 032606 93 KLEPVVELLKEGAVGVIPTD------TLYATAICL-SRSVCNSLR 130 (137)
Q Consensus 93 ~l~~aa~~Lr~GgVVa~PTD------TVYGLgcda-n~~AVerIy 130 (137)
.+++|++.|++|+.|++=-| +-.-+++.. .++.+.-+.
T Consensus 3 ~ie~Ai~alr~G~~Viv~DdedREnEgDli~aAe~~Tpe~i~fm~ 47 (227)
T 1snn_A 3 NVEKAIEALKKGEIILVYDSDEREGETDMVVASQFITPEHIRIMR 47 (227)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTTTCCEEEEEEGGGCCHHHHHHHH
T ss_pred hHHHHHHHHHCCCeEEEEeCCCCCCceeEEEEhhhCCHHHHHHHH
Confidence 47889999999998888665 445555555 666665443
No 21
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} SCOP: d.115.1.0 PDB: 3mgz_A 3mk5_A
Probab=24.25 E-value=1.5e+02 Score=23.50 Aligned_cols=39 Identities=13% Similarity=0.012 Sum_probs=28.1
Q ss_pred ccHHHHHHHHhcCCeEEeccC------CeeEeeecC-CHHHHHHHH
Q 032606 92 WKLEPVVELLKEGAVGVIPTD------TLYATAICL-SRSVCNSLR 130 (137)
Q Consensus 92 ~~l~~aa~~Lr~GgVVa~PTD------TVYGLgcda-n~~AVerIy 130 (137)
..+++|++.|++|+.|++=.| .-.-+++.. .++.++-+.
T Consensus 5 ~~ie~Ai~~lr~G~~Viv~DdedREnEgDli~aAe~~T~e~i~fm~ 50 (206)
T 3mio_A 5 DSVERAVADIAAGKAVIVIDDEDRENEGDLIFAAEKATPEMVAFMV 50 (206)
T ss_dssp CCHHHHHHHHHTTCCEEEESSSCTTCCCEEEEEGGGCCHHHHHHHH
T ss_pred hhHHHHHHHHHCCCeEEEEeCCCCccceeEEEEhHhCCHHHHHHHH
Confidence 468999999999999998765 444455555 666665543
No 22
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=24.05 E-value=41 Score=25.02 Aligned_cols=41 Identities=7% Similarity=-0.005 Sum_probs=25.4
Q ss_pred EEEecCCCCC-cccHHHHHHHHhcCCeEEeccCCeeEeeecC
Q 032606 81 YVEADPSGAD-SWKLEPVVELLKEGAVGVIPTDTLYATAICL 121 (137)
Q Consensus 81 ~levdp~~pd-~~~l~~aa~~Lr~GgVVa~PTDTVYGLgcda 121 (137)
+|-++....+ ...++++.+.|+.||++++-+=...|...+.
T Consensus 139 ~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~~~~~~~g~v~~~ 180 (248)
T 3tfw_A 139 LIFIDADKPNNPHYLRWALRYSRPGTLIIGDNVVRDGEVVNP 180 (248)
T ss_dssp EEEECSCGGGHHHHHHHHHHTCCTTCEEEEECCSGGGGGGCT
T ss_pred EEEECCchHHHHHHHHHHHHhcCCCeEEEEeCCCcCCcccCc
Confidence 3344544333 3468888999999999988443334554444
No 23
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A
Probab=23.20 E-value=1.2e+02 Score=24.17 Aligned_cols=40 Identities=13% Similarity=-0.033 Sum_probs=29.4
Q ss_pred cccHHHHHHHHhcCCeEEeccC------CeeEeeecC-CHHHHHHHH
Q 032606 91 SWKLEPVVELLKEGAVGVIPTD------TLYATAICL-SRSVCNSLR 130 (137)
Q Consensus 91 ~~~l~~aa~~Lr~GgVVa~PTD------TVYGLgcda-n~~AVerIy 130 (137)
...+++|++.|++|..|++=.| .-.-+++.. .++.++-+.
T Consensus 13 ~~~ie~Ai~~lr~G~~Viv~DdedREnEgdli~aAe~~T~e~i~fm~ 59 (217)
T 1g57_A 13 FERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTI 59 (217)
T ss_dssp HHHHHHHHHHHHTTCCEEEEC----CCCEEEEEETTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCCCCcCEEEEEEhhhCCHHHHHHHH
Confidence 4568999999999999988765 345556666 777776654
No 24
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1
Probab=21.74 E-value=51 Score=27.88 Aligned_cols=86 Identities=22% Similarity=0.266 Sum_probs=50.9
Q ss_pred ccCCcchhhhhhhhcccCCCceeeecCCCCCCCceeeeeeeeccCcccccccccceeecCceEEEEecCCCCCcccHHHH
Q 032606 18 HSHSHSHFLEAATRRAAPFPGRVSSVSPNPKPSRYRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPSGADSWKLEPV 97 (137)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~r~~krlky~~~~~~~~~~~~~levdp~~pd~~~l~~a 97 (137)
-+++.++ -|+..|-|-.+-+++|++.|--.+ +-.||.||--- -|.-++++-.|+|.|+--++..
T Consensus 45 T~~PaTf-----LRaLGpepw~~AYVqPsRRP~DGR-----YGeNPNRLq~y------~QfQVilKPsP~niQeLYL~SL 108 (298)
T 1j5w_A 45 TFHPATF-----FGSLRKGPWKVAYVQPSRRPTDGR-----YGENPNRLQRY------FQYQVIIKPSPENSQELYLESL 108 (298)
T ss_dssp GGSHHHH-----TGGGCSSCEEEEEEEEEECCC----------CCTTCCSEE------EEEEEEEESCCSSHHHHHHHHH
T ss_pred cCCHHHH-----HHhcCCCcceeeeeccCCCCCCCC-----cCCCchhhhhh------eeeEEEECCCCccHHHHHHHHH
Confidence 3456666 677889999999999888777665 56788887421 1223556666666655444433
Q ss_pred HHH---HhcCCeEE------eccCCeeEeee
Q 032606 98 VEL---LKEGAVGV------IPTDTLYATAI 119 (137)
Q Consensus 98 a~~---Lr~GgVVa------~PTDTVYGLgc 119 (137)
..+ .++..|-. -||=.-||||=
T Consensus 109 ~alGid~~~HDIRFVEDnWEsPTLGAwGLGW 139 (298)
T 1j5w_A 109 EYLGINLKEHDIRFVEDNWESPTLGAWGVGW 139 (298)
T ss_dssp HHTTCCTTTSCEEEEEECCEEGGGTEEEEEE
T ss_pred HHhCCCcccCCceeeccCCCCCccccccccc
Confidence 222 23444433 47777888874
No 25
>3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A*
Probab=21.24 E-value=50 Score=28.05 Aligned_cols=86 Identities=19% Similarity=0.248 Sum_probs=52.5
Q ss_pred ccCCcchhhhhhhhcccCCCceeeecCCCCCCCceeeeeeeeccCcccccccccceeecCceEEEEecCCCCCcccHHHH
Q 032606 18 HSHSHSHFLEAATRRAAPFPGRVSSVSPNPKPSRYRILAMTVKRSPKRLKYSAPQFTKEGGLMYVEADPSGADSWKLEPV 97 (137)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~r~~krlky~~~~~~~~~~~~~levdp~~pd~~~l~~a 97 (137)
-+++.+| -|+..|-|-.+-+++|++.|--.+ +-.||.||--- -|.-++++-.|+|.|.--++..
T Consensus 57 T~hPaTf-----LRalGpePw~~AYVqPsRRP~DGR-----YGeNPNRLq~y------yQfQVilKPsP~niQeLYL~SL 120 (311)
T 3rf1_A 57 TFHPATF-----LRSLGKKPWAAAYVAPSRRPTDGR-----YGENPNRLGAY------YQFQVLIKPSPDNIQELYLKSL 120 (311)
T ss_dssp GGSHHHH-----TTTSSSSCEEEEEEEEEECGGGCC-----TTCCSSCCSEE------EEEEEEEESCCTTHHHHHHHHH
T ss_pred CCCHHHH-----HHhcCCCcceeeeeccCCCCCCCC-----cCCCchhhhhh------eeeEEEEcCCCccHHHHHHHHH
Confidence 3566667 677889999999999888776665 66778777321 1222455666666554444432
Q ss_pred HHH---HhcCCeEE------eccCCeeEeee
Q 032606 98 VEL---LKEGAVGV------IPTDTLYATAI 119 (137)
Q Consensus 98 a~~---Lr~GgVVa------~PTDTVYGLgc 119 (137)
..+ .+...|-. -||=--||||=
T Consensus 121 ~alGId~~~HDIRFVEDnWEsPTLGAWGLGW 151 (311)
T 3rf1_A 121 ENLGFDLKSHDIRFVEDNWESPSLGAWGLGW 151 (311)
T ss_dssp HHTTCCGGGSCEEEEECCEEETTTTEEEEEE
T ss_pred HHhCCCccccCeeEeccCCCCCcccccccce
Confidence 222 23344433 37777788774
No 26
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=20.68 E-value=25 Score=26.10 Aligned_cols=21 Identities=33% Similarity=0.147 Sum_probs=18.5
Q ss_pred cHHHHHHHHhcCCeEEeccCC
Q 032606 93 KLEPVVELLKEGAVGVIPTDT 113 (137)
Q Consensus 93 ~l~~aa~~Lr~GgVVa~PTDT 113 (137)
.++++.+.|+.||++++-||.
T Consensus 132 ~l~~~~r~LkpGG~l~i~td~ 152 (218)
T 3dxy_A 132 FAELVKSKLQLGGVFHMATDW 152 (218)
T ss_dssp HHHHHHHHEEEEEEEEEEESC
T ss_pred HHHHHHHHcCCCcEEEEEeCC
Confidence 688899999999999998873
No 27
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=20.33 E-value=17 Score=30.25 Aligned_cols=35 Identities=23% Similarity=0.050 Sum_probs=25.3
Q ss_pred cHHHHHHHHhcCCeEEeccCCeeEeeecC-CHHHHHHHHh
Q 032606 93 KLEPVVELLKEGAVGVIPTDTLYATAICL-SRSVCNSLRF 131 (137)
Q Consensus 93 ~l~~aa~~Lr~GgVVa~PTDTVYGLgcda-n~~AVerIy~ 131 (137)
.++.+.+.|+.||++||-|=|+. .. |++-|+.+.+
T Consensus 266 iL~~a~~~lkpGG~LVYsTCSl~----~~ENE~vV~~~L~ 301 (359)
T 4fzv_A 266 LLAAGLLATKPGGHVVYSTCSLS----HLQNEYVVQGAIE 301 (359)
T ss_dssp HHHHHHHTEEEEEEEEEEESCCC----TTTTHHHHHHHHH
T ss_pred HHHHHHhcCCCCcEEEEEeCCCc----hhhCHHHHHHHHH
Confidence 35667888999999999875542 23 8888877653
Done!