Query 032610
Match_columns 137
No_of_seqs 113 out of 163
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 03:39:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032610.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032610hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11221 Med21: Subunit 21 of 100.0 5.1E-47 1.1E-51 283.8 14.2 129 1-129 2-144 (144)
2 KOG1510 RNA polymerase II holo 100.0 1E-45 2.3E-50 272.5 17.3 136 1-136 2-138 (139)
3 PF07544 Med9: RNA polymerase 96.7 0.015 3.2E-07 39.8 7.6 50 56-105 26-75 (83)
4 KOG1853 LIS1-interacting prote 67.9 27 0.00059 29.2 7.0 72 56-127 79-150 (333)
5 smart00150 SPEC Spectrin repea 62.9 37 0.0008 21.6 8.6 63 52-118 3-67 (101)
6 PF11315 Med30: Mediator compl 57.6 83 0.0018 23.9 8.8 45 90-135 105-149 (150)
7 PF01865 PhoU_div: Protein of 54.7 94 0.002 23.7 13.8 62 52-113 112-176 (214)
8 PF10168 Nup88: Nuclear pore c 53.8 1.3E+02 0.0028 28.2 9.6 45 82-126 572-623 (717)
9 PF04999 FtsL: Cell division p 53.2 68 0.0015 21.6 7.7 47 90-136 36-87 (97)
10 PF09660 DUF2397: Protein of u 52.7 61 0.0013 28.8 7.0 73 3-81 148-220 (486)
11 PF03962 Mnd1: Mnd1 family; I 52.3 1.1E+02 0.0024 23.7 7.7 81 53-133 68-161 (188)
12 TIGR02677 conserved hypothetic 52.1 73 0.0016 28.5 7.4 72 3-81 146-218 (494)
13 PF11336 DUF3138: Protein of u 51.6 29 0.00062 31.1 4.7 34 66-100 2-36 (514)
14 PRK13705 plasmid-partitioning 51.6 22 0.00047 30.5 3.9 25 1-25 1-25 (388)
15 PF11559 ADIP: Afadin- and alp 51.1 94 0.002 22.7 11.3 22 9-31 2-23 (151)
16 TIGR02209 ftsL_broad cell divi 50.8 68 0.0015 20.9 7.5 46 90-137 32-77 (85)
17 PF00015 MCPsignal: Methyl-acc 47.4 1.1E+02 0.0025 22.6 7.8 30 50-79 78-107 (213)
18 PF13851 GAS: Growth-arrest sp 47.0 1.3E+02 0.0027 23.6 7.3 72 53-128 68-139 (201)
19 KOG0946 ER-Golgi vesicle-tethe 46.4 2.2E+02 0.0047 27.7 9.7 28 59-86 616-643 (970)
20 COG1422 Predicted membrane pro 46.0 93 0.002 24.9 6.4 45 88-132 71-116 (201)
21 PF05010 TACC: Transforming ac 45.9 80 0.0017 25.1 6.1 37 90-126 169-205 (207)
22 PF06103 DUF948: Bacterial pro 45.6 89 0.0019 20.8 6.1 38 89-126 33-70 (90)
23 PF11471 Sugarporin_N: Maltopo 45.3 59 0.0013 20.9 4.3 26 88-113 31-56 (60)
24 TIGR00153 conserved hypothetic 44.2 1.5E+02 0.0032 22.9 12.3 61 52-113 115-178 (216)
25 PF04977 DivIC: Septum formati 44.1 82 0.0018 19.9 7.4 48 89-136 17-70 (80)
26 TIGR00996 Mtu_fam_mce virulenc 43.8 95 0.0021 24.9 6.4 23 56-78 176-198 (291)
27 PF00435 Spectrin: Spectrin re 43.8 83 0.0018 19.9 8.1 64 50-117 4-69 (105)
28 KOG1003 Actin filament-coating 43.3 1.2E+02 0.0026 24.3 6.6 64 63-126 139-202 (205)
29 PF04111 APG6: Autophagy prote 42.4 65 0.0014 26.9 5.4 43 83-125 58-100 (314)
30 PF06103 DUF948: Bacterial pro 41.5 1E+02 0.0023 20.4 6.2 38 90-127 27-64 (90)
31 PF09548 Spore_III_AB: Stage I 40.5 78 0.0017 23.8 5.1 69 48-116 85-154 (170)
32 PF05812 Herpes_BLRF2: Herpesv 40.2 1.1E+02 0.0025 22.3 5.7 52 83-134 4-68 (118)
33 PF12329 TMF_DNA_bd: TATA elem 39.7 1.1E+02 0.0024 20.2 6.7 62 59-120 3-64 (74)
34 KOG4031 Vesicle coat protein c 39.4 1.3E+02 0.0028 24.3 6.3 40 85-124 113-153 (216)
35 PF15290 Syntaphilin: Golgi-lo 39.0 1.2E+02 0.0026 25.6 6.3 42 85-128 95-138 (305)
36 COG1463 Ttg2C ABC-type transpo 38.4 1.2E+02 0.0027 25.5 6.5 41 54-94 183-223 (359)
37 TIGR00996 Mtu_fam_mce virulenc 37.8 83 0.0018 25.2 5.2 7 70-76 169-175 (291)
38 PF11932 DUF3450: Protein of u 37.6 2.1E+02 0.0045 22.7 7.8 8 56-63 51-58 (251)
39 PF10805 DUF2730: Protein of u 37.1 1.5E+02 0.0032 20.8 7.8 54 62-116 46-99 (106)
40 PF10018 Med4: Vitamin-D-recep 37.1 1.9E+02 0.0041 22.1 7.7 61 58-123 2-63 (188)
41 PRK07739 flgK flagellar hook-a 37.0 2.3E+02 0.005 25.2 8.2 102 10-128 116-220 (507)
42 COG4669 EscJ Type III secretor 36.8 83 0.0018 25.9 5.0 57 16-80 64-124 (246)
43 PHA03162 hypothetical protein; 35.3 1.9E+02 0.0042 21.7 7.8 56 78-133 9-77 (135)
44 PRK08871 flgK flagellar hook-a 35.3 2.3E+02 0.005 26.1 8.1 41 88-128 168-208 (626)
45 TIGR02492 flgK_ends flagellar 35.1 2.6E+02 0.0056 23.1 8.5 44 85-128 162-209 (322)
46 KOG0837 Transcriptional activa 35.1 1.3E+02 0.0029 25.1 5.9 45 88-132 226-270 (279)
47 KOG2751 Beclin-like protein [S 35.0 1.3E+02 0.0029 26.7 6.2 73 56-128 151-236 (447)
48 TIGR01542 A118_put_portal phag 35.0 2.1E+02 0.0046 25.5 7.6 89 2-98 378-470 (476)
49 PF09177 Syntaxin-6_N: Syntaxi 34.8 1.2E+02 0.0026 20.6 4.9 61 60-128 7-67 (97)
50 PF14523 Syntaxin_2: Syntaxin- 34.6 1.4E+02 0.0031 19.9 7.8 66 50-115 29-97 (102)
51 PF04201 TPD52: Tumour protein 34.5 2.1E+02 0.0045 22.1 6.5 39 81-123 25-66 (162)
52 PF11887 DUF3407: Protein of u 34.4 2.5E+02 0.0055 22.8 7.8 74 54-127 59-132 (267)
53 PF13093 FTA4: Kinetochore com 33.8 1.6E+02 0.0034 23.4 6.1 53 71-124 116-176 (213)
54 PF14992 TMCO5: TMCO5 family 33.4 2.9E+02 0.0063 23.2 8.5 98 12-113 76-175 (280)
55 TIGR02833 spore_III_AB stage I 32.5 1.3E+02 0.0028 22.8 5.2 69 48-116 85-154 (170)
56 PRK08147 flgK flagellar hook-a 31.9 3.7E+02 0.0081 24.0 9.6 43 86-128 164-211 (547)
57 PF01540 Lipoprotein_7: Adhesi 31.5 33 0.00071 29.0 1.9 33 46-78 276-308 (353)
58 COG2433 Uncharacterized conser 31.3 2.8E+02 0.006 26.0 7.8 74 50-123 432-508 (652)
59 PRK07191 flgK flagellar hook-a 30.9 3E+02 0.0066 24.0 7.9 67 52-128 139-208 (456)
60 TIGR01069 mutS2 MutS2 family p 30.8 2.9E+02 0.0063 26.1 8.2 13 68-80 511-523 (771)
61 PF10073 DUF2312: Uncharacteri 30.5 1.3E+02 0.0029 20.2 4.4 27 88-114 10-36 (74)
62 PF12709 Kinetocho_Slk19: Cent 30.3 1.3E+02 0.0029 20.9 4.4 30 90-119 57-86 (87)
63 PF12290 DUF3802: Protein of u 29.8 1.4E+02 0.003 21.8 4.6 26 103-128 60-85 (113)
64 PF14931 IFT20: Intraflagellar 29.5 2.2E+02 0.0048 20.6 8.0 77 50-126 23-106 (120)
65 KOG4552 Vitamin-D-receptor int 29.3 1.8E+02 0.0038 23.8 5.6 34 89-122 88-121 (272)
66 PRK01059 ATP:guanido phosphotr 29.1 2E+02 0.0043 24.6 6.3 119 2-129 138-278 (346)
67 PRK13694 hypothetical protein; 28.9 1.4E+02 0.003 20.6 4.3 27 88-114 18-44 (83)
68 PRK13729 conjugal transfer pil 28.9 2.7E+02 0.0059 25.1 7.2 21 103-123 100-120 (475)
69 TIGR00606 rad50 rad50. This fa 28.8 6E+02 0.013 25.4 11.7 72 56-127 794-870 (1311)
70 PRK08307 stage III sporulation 28.7 1.6E+02 0.0034 22.4 5.1 69 48-116 86-155 (171)
71 PF03148 Tektin: Tektin family 28.7 3.7E+02 0.0081 23.0 10.1 35 44-78 197-231 (384)
72 PHA02557 22 prohead core prote 28.7 2.8E+02 0.0061 23.2 6.8 60 66-125 113-177 (271)
73 KOG3385 V-SNARE [Intracellular 28.7 1E+02 0.0022 22.6 3.8 30 90-119 26-55 (118)
74 PF04642 DUF601: Protein of un 28.7 3.5E+02 0.0077 22.7 7.4 52 71-122 171-222 (311)
75 PF05600 DUF773: Protein of un 28.6 3.7E+02 0.0081 24.1 8.1 66 54-126 432-497 (507)
76 PRK06799 flgK flagellar hook-a 28.2 3.6E+02 0.0078 23.4 7.8 43 86-128 168-211 (431)
77 PRK05771 V-type ATP synthase s 26.8 4.1E+02 0.0089 24.2 8.2 39 76-115 206-248 (646)
78 PF05816 TelA: Toxic anion res 26.5 3.2E+02 0.007 22.8 7.1 69 55-123 85-153 (333)
79 smart00542 FYRC "FY-rich" doma 26.3 41 0.00089 22.7 1.3 14 68-81 58-71 (86)
80 PF07851 TMPIT: TMPIT-like pro 25.9 3.4E+02 0.0073 23.2 7.0 42 57-101 17-58 (330)
81 PF07106 TBPIP: Tat binding pr 25.5 2.8E+02 0.0062 20.5 6.8 62 48-109 73-136 (169)
82 KOG4367 Predicted Zn-finger pr 25.5 2.1E+02 0.0045 26.0 5.8 53 5-77 272-324 (699)
83 PRK10636 putative ABC transpor 25.3 5.2E+02 0.011 23.5 8.9 66 57-122 566-631 (638)
84 COG3750 Uncharacterized protei 25.2 1.8E+02 0.0038 20.1 4.2 28 88-115 20-47 (85)
85 PRK10361 DNA recombination pro 25.0 4.5E+02 0.0097 23.7 7.9 46 90-135 82-127 (475)
86 PF11833 DUF3353: Protein of u 24.9 1.3E+02 0.0029 23.5 4.2 41 96-136 7-47 (194)
87 PF10046 BLOC1_2: Biogenesis o 24.9 2.4E+02 0.0051 19.4 6.8 36 85-124 62-97 (99)
88 PRK05683 flgK flagellar hook-a 23.8 6E+02 0.013 23.7 10.6 72 54-128 134-208 (676)
89 COG4345 Uncharacterized protei 23.7 3.5E+02 0.0076 21.2 6.1 43 84-126 120-162 (181)
90 KOG1962 B-cell receptor-associ 23.6 2.5E+02 0.0053 22.7 5.5 39 88-126 157-195 (216)
91 PRK06665 flgK flagellar hook-a 23.6 5.8E+02 0.013 23.4 9.3 43 86-128 175-220 (627)
92 PRK12714 flgK flagellar hook-a 23.5 5.8E+02 0.013 23.4 9.2 41 88-128 165-206 (624)
93 PF03670 UPF0184: Uncharacteri 23.3 2.6E+02 0.0056 19.3 6.4 11 113-123 50-60 (83)
94 PF01997 Translin: Translin fa 23.3 3.3E+02 0.0071 21.0 6.1 27 53-79 4-30 (200)
95 PF08066 PMC2NT: PMC2NT (NUC01 23.3 2.4E+02 0.0053 19.0 7.0 31 97-127 59-89 (91)
96 KOG0288 WD40 repeat protein Ti 23.2 3.7E+02 0.008 24.0 6.9 68 55-122 14-88 (459)
97 cd07593 BAR_MUG137_fungi The B 23.2 2.9E+02 0.0064 21.9 5.9 41 92-132 145-192 (215)
98 PRK07521 flgK flagellar hook-a 23.1 5.2E+02 0.011 22.7 8.7 17 11-27 100-116 (483)
99 PF06005 DUF904: Protein of un 22.9 2.3E+02 0.0051 18.7 6.7 29 98-126 41-69 (72)
100 PF05565 Sipho_Gp157: Siphovir 22.8 3.3E+02 0.0072 20.4 10.2 62 48-119 23-84 (162)
101 PF08614 ATG16: Autophagy prot 22.8 2E+02 0.0043 22.0 4.8 24 54-77 130-153 (194)
102 PF14772 NYD-SP28: Sperm tail 22.5 2.6E+02 0.0057 19.1 6.9 47 55-111 52-98 (104)
103 PF15079 DUF4546: Domain of un 22.2 2.8E+02 0.0061 21.9 5.4 24 92-115 50-73 (205)
104 PF05659 RPW8: Arabidopsis bro 22.2 1.6E+02 0.0036 21.9 4.1 42 54-98 37-78 (147)
105 PF09969 DUF2203: Uncharacteri 22.0 3.1E+02 0.0068 19.8 6.6 57 55-116 14-70 (120)
106 KOG0995 Centromere-associated 22.0 6.4E+02 0.014 23.4 9.2 84 51-134 443-537 (581)
107 PRK08471 flgK flagellar hook-a 21.9 6.3E+02 0.014 23.2 9.5 99 13-128 112-215 (613)
108 PRK11637 AmiB activator; Provi 21.6 5.2E+02 0.011 22.1 8.5 8 91-98 98-105 (428)
109 PF04420 CHD5: CHD5-like prote 21.6 3.5E+02 0.0076 20.2 6.3 62 59-122 38-99 (161)
110 PF08105 Antimicrobial10: Metc 21.4 78 0.0017 19.9 1.8 13 30-42 37-49 (52)
111 PF04912 Dynamitin: Dynamitin 21.4 5.1E+02 0.011 22.0 8.3 34 62-102 299-332 (388)
112 PF04849 HAP1_N: HAP1 N-termin 21.2 4.8E+02 0.01 22.1 7.0 64 59-122 204-267 (306)
113 PRK10884 SH3 domain-containing 21.0 4.2E+02 0.0091 20.9 8.8 36 90-125 133-168 (206)
114 PF01540 Lipoprotein_7: Adhesi 21.0 5.2E+02 0.011 22.0 10.6 28 49-76 162-189 (353)
115 PF05965 FYRC: F/Y rich C-term 20.9 47 0.001 22.1 0.8 16 67-82 61-76 (86)
116 PRK11546 zraP zinc resistance 20.6 3.8E+02 0.0082 20.2 7.4 60 50-116 57-116 (143)
117 PF09795 Atg31: Autophagy-rela 20.4 1.5E+02 0.0032 22.9 3.5 22 56-77 139-160 (160)
118 TIGR00606 rad50 rad50. This fa 20.4 8.7E+02 0.019 24.3 10.0 76 51-126 885-960 (1311)
119 PF05372 Delta_lysin: Delta ly 20.1 1.6E+02 0.0034 15.7 2.5 13 56-68 9-21 (25)
No 1
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=100.00 E-value=5.1e-47 Score=283.80 Aligned_cols=129 Identities=41% Similarity=0.583 Sum_probs=108.5
Q ss_pred CchhhHHHHHHHHHHHHHHHhHhhhcccCCCCCCCCCCCCCCC--------------CCCcchHhhhhhHHHHHHHHHHH
Q 032610 1 MDIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPA--------------NPTEDAANFAEQPKLMSAALVKA 66 (137)
Q Consensus 1 mDrLTQLQd~ldqLa~~f~~sig~L~~~a~~~~~~~~~~~~~~--------------~~~~~~~~f~~~~~ela~dii~k 66 (137)
||||||||||||+|+++||||||||+++|||++|+++.+.... ..+.+++.|++++++||+|||.|
T Consensus 2 ~DrlTQLQd~ldqL~~~f~~si~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elA~dIi~k 81 (144)
T PF11221_consen 2 ADRLTQLQDCLDQLAEQFCNSIGYLQRDAPPSPLSPNDPSISDPKPQAPPQQQQQAEPAPDPPEEFEENIKELATDIIRK 81 (144)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGG-----------------------------HHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCcccccCccccchhhhhhhhcccCCChhhHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999887632111 11247899999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 67 AKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQELFSQAADN 129 (137)
Q Consensus 67 akqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~ia~~ 129 (137)
+|+|++|||||||+++|+++|+++|++|++||++++++|+++|++||.+|++|+++|+.|++|
T Consensus 82 akqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~i~~ia~~ 144 (144)
T PF11221_consen 82 AKQIEYLIDSLPGIEVSEEEQLKRIKELEEENEEAEEELQEAVKEAEELLKQVQELIREIARG 144 (144)
T ss_dssp HHHHHHHHHHSTTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999976
No 2
>KOG1510 consensus RNA polymerase II holoenzyme and mediator subcomplex, subunit SURB7/SRB7 [Transcription]
Probab=100.00 E-value=1e-45 Score=272.52 Aligned_cols=136 Identities=42% Similarity=0.581 Sum_probs=128.2
Q ss_pred CchhhHHHHHHHHHHHHHHHhHhhhcccCCCCCCCCCCCCCCC-CCCcchHhhhhhHHHHHHHHHHHHHHHHHHHHhCCC
Q 032610 1 MDIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPA-NPTEDAANFAEQPKLMSAALVKAAKQFDALVAALPL 79 (137)
Q Consensus 1 mDrLTQLQd~ldqLa~~f~~sig~L~~~a~~~~~~~~~~~~~~-~~~~~~~~f~~~~~ela~dii~kakqIe~LIdsLPg 79 (137)
||||||||||||+||++|||+||||+++|||++|+++.|.+.. ..+.+++.|.++++.||++|++|+||||.||+||||
T Consensus 2 aDRlTQLQd~vn~~A~qf~naig~Lq~~~pp~~l~~~e~~~~~~~~~~pa~p~~~~~~~laa~i~~~akqId~LIdsLP~ 81 (139)
T KOG1510|consen 2 ADRLTQLQDTVNEMAEQFCNAIGVLQQTHPPVPLPNNEPESPDKVNPIPAEPFEEYAQLLAADIAKKAKQIDTLIDSLPG 81 (139)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 7999999999999999999999999999999999988876543 234566779999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 032610 80 AEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQELFSQAADNCLNLKKP 136 (137)
Q Consensus 80 ~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~ia~~~l~~r~~ 136 (137)
++++++.|+++|++|++|+++++.+|++.|.++|.|+++|+.+|..|++++++||++
T Consensus 82 ~~~~~e~Ql~~i~kLq~en~e~~~el~~~v~~~e~Ll~~vq~~le~~a~~~l~~k~s 138 (139)
T KOG1510|consen 82 EEGSAEAQLEKIKKLQEENEEVALELEELVSKGEKLLEQVQSLLEDIADLQLNSKKS 138 (139)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 999999999999999999999999999999999999999999999999999999974
No 3
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=96.67 E-value=0.015 Score=39.79 Aligned_cols=50 Identities=20% Similarity=0.190 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 032610 56 PKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDL 105 (137)
Q Consensus 56 ~~ela~dii~kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el 105 (137)
...-+..|=.|-+....+|.+|||++.|.++|...|+.|+++++...+-+
T Consensus 26 ~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L 75 (83)
T PF07544_consen 26 LDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVL 75 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456677778888999999999999999999999999999885544433
No 4
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=67.95 E-value=27 Score=29.24 Aligned_cols=72 Identities=18% Similarity=0.140 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 56 PKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQELFSQAA 127 (137)
Q Consensus 56 ~~ela~dii~kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~ia 127 (137)
.+.+-..-++-.||+..|=|-|--...--+.+-++|++|+.-|...+.-.+..+.-++.+-.+++.+|..+|
T Consensus 79 Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnA 150 (333)
T KOG1853|consen 79 KEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNA 150 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 344445556777888888887766655556667789999888877777666666666666666666665543
No 5
>smart00150 SPEC Spectrin repeats.
Probab=62.88 E-value=37 Score=21.62 Aligned_cols=63 Identities=24% Similarity=0.276 Sum_probs=43.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 52 FAEQPKLMSAALVKAAKQFDALVAALPLAE--GGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQ 118 (137)
Q Consensus 52 f~~~~~ela~dii~kakqIe~LIdsLPg~~--~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~ 118 (137)
|...+.++-.-|-.+.. .+.+.|... .+-+.+.++.+.++.++......+......|+.|+..
T Consensus 3 f~~~~~~l~~Wl~~~e~----~l~~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~~ 67 (101)
T smart00150 3 FLRDADELEAWLSEKEA----LLASEDLGKDLESVEALLKKHEALEAELEAHEERVEALNELGEQLIEE 67 (101)
T ss_pred hHHHHHHHHHHHHHHHH----HHhCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence 56666777666665553 333433211 2335667789999999999899989888888888764
No 6
>PF11315 Med30: Mediator complex subunit 30; InterPro: IPR021019 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med30 is a metazoan-specific subunit of Mediator [], having no homologues in yeasts.
Probab=57.64 E-value=83 Score=23.94 Aligned_cols=45 Identities=9% Similarity=0.248 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 032610 90 RIAELQSENDAVGQDLQRQLEAAEKELKQVQELFSQAADNCLNLKK 135 (137)
Q Consensus 90 ~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~ia~~~l~~r~ 135 (137)
..+.+.+|.+++-+.+..+-+.-..++++++..+-+|-. .|.+|+
T Consensus 105 ~~~~~~~er~el~e~v~~KN~qLk~iid~lR~~iweIN~-ml~~r~ 149 (150)
T PF11315_consen 105 EYRQLLEERKELIEQVKQKNQQLKEIIDQLRNIIWEINT-MLAMRR 149 (150)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHccc
Confidence 556677788777776666666666666676666666643 466654
No 7
>PF01865 PhoU_div: Protein of unknown function DUF47; InterPro: IPR018445 This family includes prokaryotic proteins of unknown function, as well as a protein annotated as the pit accessory protein from Rhizobium meliloti (Sinorhizobium meliloti) (O30498 from SWISSPROT). However, the function of this protein is also unknown (Pit stands for Phosphate transport) [].; PDB: 2OLT_C 2IIU_C 3L39_A.
Probab=54.72 E-value=94 Score=23.70 Aligned_cols=62 Identities=21% Similarity=0.259 Sum_probs=51.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhCCCCC-CCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 52 FAEQPKLMSAALVKAAKQFDALVAALPLAE-GGEE--AQLKRIAELQSENDAVGQDLQRQLEAAE 113 (137)
Q Consensus 52 f~~~~~ela~dii~kakqIe~LIdsLPg~~-~see--~Q~~~i~~L~~E~~~~~~el~~~v~e~e 113 (137)
+.....+|+.-++..++-+...|..|+... ++-+ +-..+|..++.+-.....+....+-.-+
T Consensus 112 ~~~~~~~l~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~I~~~E~~~D~l~~~~~~~lf~~~ 176 (214)
T PF01865_consen 112 LREEFQELAEIVVEAIEELVEAIEELKSILESSFEEKELIKEINKLEEEADKLYRRLIKKLFSNE 176 (214)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCS-HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 346688999999999999999999999853 3333 5788999999999999988888888733
No 8
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=53.81 E-value=1.3e+02 Score=28.25 Aligned_cols=45 Identities=27% Similarity=0.405 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 82 GGEEAQLKRIAELQSENDAV-------GQDLQRQLEAAEKELKQVQELFSQA 126 (137)
Q Consensus 82 ~see~Q~~~i~~L~~E~~~~-------~~el~~~v~e~e~ll~~v~~~l~~i 126 (137)
.--+.|+++|.+|+++.+.+ ++++.++...=+.|.++++.+++.+
T Consensus 572 ~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l 623 (717)
T PF10168_consen 572 QQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLL 623 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457888888877766555 4455555555566666677766655
No 9
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=53.20 E-value=68 Score=21.64 Aligned_cols=47 Identities=17% Similarity=0.246 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhccCC
Q 032610 90 RIAELQSENDAVGQDLQRQLEAAEKELKQVQEL-----FSQAADNCLNLKKP 136 (137)
Q Consensus 90 ~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~-----l~~ia~~~l~~r~~ 136 (137)
..+.+..++..++.+..+.-.+-+.|.-++..+ |..+|..+|.|..|
T Consensus 36 ~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~~~rIe~iA~~~LgM~~P 87 (97)
T PF04999_consen 36 QSRQLFYELQQLEKEIDQLQEENERLRLEIATLSSPSRIERIAREKLGMVPP 87 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHcCCCCCC
Confidence 344555555555566666656656565555544 88999999999877
No 10
>PF09660 DUF2397: Protein of unknown function (DUF2397); InterPro: IPR013493 Proteins in this family are encoded within a conserved gene four-gene neighbourhood found sporadically in a phylogenetically broad range of bacteria including: Nocardia farcinica, Symbiobacterium thermophilum, Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1)) and Ralstonia solanacearum (Betaproteobacteria).
Probab=52.66 E-value=61 Score=28.83 Aligned_cols=73 Identities=15% Similarity=0.113 Sum_probs=51.4
Q ss_pred hhhHHHHHHHHHHHHHHHhHhhhcccCCCCCCCCCCCCCCCCCCcchHhhhhhHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 032610 3 IISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAANFAEQPKLMSAALVKAAKQFDALVAALPLAE 81 (137)
Q Consensus 3 rLTQLQd~ldqLa~~f~~sig~L~~~a~~~~~~~~~~~~~~~~~~~~~~f~~~~~ela~dii~kakqIe~LIdsLPg~~ 81 (137)
.++.|.+....|++..-..+++|++........+. +- -.=.+.+-..++.|+.+|.+.+.+|+.+|..|++.+
T Consensus 148 ~w~~L~~~f~~L~~na~df~~~L~~~~~~~~~~~e-----~F-l~yKd~Li~YL~~Fv~~L~r~~~~I~~~l~~l~~~~ 220 (486)
T PF09660_consen 148 WWRDLFEDFERLAQNAQDFYASLQSVKAEEDMDTE-----AF-LAYKDALIDYLRRFVQDLQRRAPRIAAALRELEDEG 220 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccChh-----HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 47888999999999888888888765432211100 00 001123446799999999999999999999999653
No 11
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=52.31 E-value=1.1e+02 Score=23.73 Aligned_cols=81 Identities=21% Similarity=0.329 Sum_probs=53.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhC----CCCCCCHHH--HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Q 032610 53 AEQPKLMSAALVKAAKQFDALVAAL----PLAEGGEEA--QLKRIAELQSENDAVGQDLQ-------RQLEAAEKELKQV 119 (137)
Q Consensus 53 ~~~~~ela~dii~kakqIe~LIdsL----Pg~~~see~--Q~~~i~~L~~E~~~~~~el~-------~~v~e~e~ll~~v 119 (137)
...+..+-..+....+.|..|-..| .|-+.+++- .++++..|..+++....++. +.+.+...-....
T Consensus 68 ~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~ 147 (188)
T PF03962_consen 68 QNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIA 147 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3445556666665555555444433 233333322 36799999999999999998 6677777777777
Q ss_pred HHHHHHHHHHHHhc
Q 032610 120 QELFSQAADNCLNL 133 (137)
Q Consensus 120 ~~~l~~ia~~~l~~ 133 (137)
.+++...++++...
T Consensus 148 ~~~anrwTDNI~~l 161 (188)
T PF03962_consen 148 KEAANRWTDNIFSL 161 (188)
T ss_pred HHHHHHHHhhHHHH
Confidence 77777777776543
No 12
>TIGR02677 conserved hypothetical protein TIGR02677. Members of this protein belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria).
Probab=52.10 E-value=73 Score=28.55 Aligned_cols=72 Identities=17% Similarity=0.131 Sum_probs=50.8
Q ss_pred hhhHHHHHHHHHHHHHHHhHhhhcccCCCCCCCCCCCCCCCCCC-cchHhhhhhHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 032610 3 IISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPT-EDAANFAEQPKLMSAALVKAAKQFDALVAALPLAE 81 (137)
Q Consensus 3 rLTQLQd~ldqLa~~f~~sig~L~~~a~~~~~~~~~~~~~~~~~-~~~~~f~~~~~ela~dii~kakqIe~LIdsLPg~~ 81 (137)
.++.|......|++..-..+++|++........+. .- .=.+.+-..++.|+.++...+-+|...+..||+-+
T Consensus 146 ~~~~L~~~f~~L~~na~df~~~L~~~~~~~~~~~e-------~Fl~yKd~Li~YL~~Fv~~L~~~~~~I~~~l~~l~~~~ 218 (494)
T TIGR02677 146 TLRELYGSFESLADNAQAFMADLQRHRPLEVADYE-------AFLAYKDRLIAYLQDFIVRLVDRSEQIAQLLRVLAESG 218 (494)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccchhhhcChh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhH
Confidence 46778888888888888888888765443332200 00 00123346699999999999999999999998753
No 13
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=51.63 E-value=29 Score=31.06 Aligned_cols=34 Identities=41% Similarity=0.385 Sum_probs=24.0
Q ss_pred HHHHHHHHHH-hCCCCCCCHHHHHHHHHHHHHHHHH
Q 032610 66 AAKQFDALVA-ALPLAEGGEEAQLKRIAELQSENDA 100 (137)
Q Consensus 66 kakqIe~LId-sLPg~~~see~Q~~~i~~L~~E~~~ 100 (137)
|-|.|-.||- +||+.- ....+..+|+.|+.|+..
T Consensus 2 k~~~~~alv~~al~~~a-~a~a~a~~i~~L~~ql~a 36 (514)
T PF11336_consen 2 KKKLITALVAGALPGAA-MAAATADQIKALQAQLQA 36 (514)
T ss_pred chhHHHHHHHhhccccc-cccCCHHHHHHHHHHHHH
Confidence 4578888998 999963 344556677777777743
No 14
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=51.60 E-value=22 Score=30.49 Aligned_cols=25 Identities=20% Similarity=0.150 Sum_probs=20.6
Q ss_pred CchhhHHHHHHHHHHHHHHHhHhhh
Q 032610 1 MDIISQLQEQINQIAGIAFNTFGTL 25 (137)
Q Consensus 1 mDrLTQLQd~ldqLa~~f~~sig~L 25 (137)
||..||||.||+.+..+--.-..++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~ 25 (388)
T PRK13705 1 MDLMETLNQCINAGHEMTKAIAIAQ 25 (388)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999887766655554
No 15
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=51.14 E-value=94 Score=22.67 Aligned_cols=22 Identities=14% Similarity=-0.014 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHhHhhhcccCCC
Q 032610 9 EQINQIAGIAFNTFGTLQRDAPP 31 (137)
Q Consensus 9 d~ldqLa~~f~~sig~L~~~a~~ 31 (137)
.|+.-|...+. |.||+.....+
T Consensus 2 ~~~~yiN~~L~-s~G~~~~~~~~ 23 (151)
T PF11559_consen 2 NAIEYINQQLL-SRGYPSDGLLF 23 (151)
T ss_pred hHHHHHHHHHH-HCCCCCCCccC
Confidence 45666666655 88888654433
No 16
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=50.82 E-value=68 Score=20.91 Aligned_cols=46 Identities=20% Similarity=0.265 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 032610 90 RIAELQSENDAVGQDLQRQLEAAEKELKQVQELFSQAADNCLNLKKPN 137 (137)
Q Consensus 90 ~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~ia~~~l~~r~~~ 137 (137)
.+..++.+......+-.+-..|...+-. .+.|..+|...|.+..|+
T Consensus 32 ~~~~~~~~~~~l~~en~~L~~ei~~l~~--~~rIe~~Ar~~lgM~~p~ 77 (85)
T TIGR02209 32 ELQKLQLEIDKLQKEWRDLQLEVAELSR--HERIEKIAKKQLGMKLPD 77 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHhcCCCCCC
Confidence 3444444444444443333333333333 455889999999988773
No 17
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=47.41 E-value=1.1e+02 Score=22.56 Aligned_cols=30 Identities=13% Similarity=0.261 Sum_probs=25.1
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHhCCC
Q 032610 50 ANFAEQPKLMSAALVKAAKQFDALVAALPL 79 (137)
Q Consensus 50 ~~f~~~~~ela~dii~kakqIe~LIdsLPg 79 (137)
.+..+.++.||...-..+++|..+|+.+-.
T Consensus 78 ~vvA~eir~LA~~t~~~~~~I~~~i~~i~~ 107 (213)
T PF00015_consen 78 AVVADEIRKLAEQTSESAKEISEIIEEIQE 107 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHhhhhh
Confidence 455678999999999999999999987654
No 18
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=47.01 E-value=1.3e+02 Score=23.60 Aligned_cols=72 Identities=11% Similarity=0.178 Sum_probs=50.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 53 AEQPKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQELFSQAAD 128 (137)
Q Consensus 53 ~~~~~ela~dii~kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~ia~ 128 (137)
.....+|=..+..-.|+-..|-.. ...-....+.|+.|.-|++...+.+....++.+.|..+...+|.++-+
T Consensus 68 ~~e~~eL~k~L~~y~kdK~~L~~~----k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQ 139 (201)
T PF13851_consen 68 EEEVEELRKQLKNYEKDKQSLQNL----KARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQ 139 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555544444433322 122233355899999999999999999999999999999999988865
No 19
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.38 E-value=2.2e+02 Score=27.70 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCHHH
Q 032610 59 MSAALVKAAKQFDALVAALPLAEGGEEA 86 (137)
Q Consensus 59 la~dii~kakqIe~LIdsLPg~~~see~ 86 (137)
|..-++.-.|..+++|.++=.-...++.
T Consensus 616 lD~~f~kL~kele~~i~k~ls~~~eee~ 643 (970)
T KOG0946|consen 616 LDFEFKKLFKELEGLIAKLLSSKTEEEE 643 (970)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCCccch
Confidence 4555666677777777776655444444
No 20
>COG1422 Predicted membrane protein [Function unknown]
Probab=46.01 E-value=93 Score=24.85 Aligned_cols=45 Identities=22% Similarity=0.320 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Q 032610 88 LKRIAELQSENDAVGQDLQRQLEAAE-KELKQVQELFSQAADNCLN 132 (137)
Q Consensus 88 ~~~i~~L~~E~~~~~~el~~~v~e~e-~ll~~v~~~l~~ia~~~l~ 132 (137)
-+++++++++.++..++.+++-++++ .-++++++.=.++.+.|.+
T Consensus 71 ~ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~e 116 (201)
T COG1422 71 QEKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQRE 116 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 35888888888888888888777554 4577777777777666654
No 21
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=45.92 E-value=80 Score=25.12 Aligned_cols=37 Identities=16% Similarity=0.253 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 90 RIAELQSENDAVGQDLQRQLEAAEKELKQVQELFSQA 126 (137)
Q Consensus 90 ~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~i 126 (137)
.|++.+-.+.-.+..+.+..++-++|.+.++++|..+
T Consensus 169 ~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI~k~ 205 (207)
T PF05010_consen 169 SLKKEEMKVQSLEESLEQKTKENEELTKICDELISKM 205 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6777777788888899999999999999999998765
No 22
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=45.60 E-value=89 Score=20.79 Aligned_cols=38 Identities=24% Similarity=0.399 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 89 KRIAELQSENDAVGQDLQRQLEAAEKELKQVQELFSQA 126 (137)
Q Consensus 89 ~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~i 126 (137)
+.++.++++......+....+.+...+++.|++....+
T Consensus 33 ~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v 70 (90)
T PF06103_consen 33 KTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKV 70 (90)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 35555666666666666666666666665555554433
No 23
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=45.33 E-value=59 Score=20.86 Aligned_cols=26 Identities=27% Similarity=0.230 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 88 LKRIAELQSENDAVGQDLQRQLEAAE 113 (137)
Q Consensus 88 ~~~i~~L~~E~~~~~~el~~~v~e~e 113 (137)
.+||..|+..+.+++++...+=.++.
T Consensus 31 EqRLa~LE~rL~~ae~ra~~ae~~~~ 56 (60)
T PF11471_consen 31 EQRLAALEQRLQAAEQRAQAAEARAK 56 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34999999999999988877666554
No 24
>TIGR00153 conserved hypothetical protein TIGR00153. An apparent homolog with a suggested function is Pit accessory protein from Sinorhizobium meliloti, which may be involved in phosphate (Pi) transport.
Probab=44.20 E-value=1.5e+02 Score=22.94 Aligned_cols=61 Identities=20% Similarity=0.268 Sum_probs=45.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhCCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 52 FAEQPKLMSAALVKAAKQFDALVAALPLAEGGEE---AQLKRIAELQSENDAVGQDLQRQLEAAE 113 (137)
Q Consensus 52 f~~~~~ela~dii~kakqIe~LIdsLPg~~~see---~Q~~~i~~L~~E~~~~~~el~~~v~e~e 113 (137)
+.....+|+.-++.+++.+...|..|.. ..+.. +=...|..++.|-..........+-+.+
T Consensus 115 l~~~~~~l~~~i~~~~~~l~~av~~l~~-~~~~~~i~~~~~~I~~lE~e~D~i~~~~~~~Lf~~e 178 (216)
T TIGR00153 115 LRDEFLLVLKITVDMIQHLHRVVEVIEL-ETDLSLANDIIKEIKDLEDEIDVMQIRIYKKLYNLE 178 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4567899999999999999999999743 33322 3355888888888877777766665444
No 25
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=44.08 E-value=82 Score=19.94 Aligned_cols=48 Identities=19% Similarity=0.331 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhccCC
Q 032610 89 KRIAELQSENDAVGQDLQRQLEAAEKELKQVQEL------FSQAADNCLNLKKP 136 (137)
Q Consensus 89 ~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~------l~~ia~~~l~~r~~ 136 (137)
.++..+..+..+...++.+.-.+-+.|-.+++.+ +..+|...+.+-.|
T Consensus 17 ~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~lgm~~~ 70 (80)
T PF04977_consen 17 SRYYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAREKLGMVKP 70 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCcCC
Confidence 3445555555555555555555555555555544 66777766665444
No 26
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=43.78 E-value=95 Score=24.89 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Q 032610 56 PKLMSAALVKAAKQFDALVAALP 78 (137)
Q Consensus 56 ~~ela~dii~kakqIe~LIdsLP 78 (137)
...++..+.....+|..+|+.+-
T Consensus 176 l~~l~~~l~~~~~~i~~ll~~l~ 198 (291)
T TIGR00996 176 LAQLTAALNARDGDIGALIDNLN 198 (291)
T ss_pred HHHHHHHHHhcchhHHHHHHHHH
Confidence 44444444444445555544443
No 27
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=43.76 E-value=83 Score=19.93 Aligned_cols=64 Identities=20% Similarity=0.210 Sum_probs=41.4
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHhCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 50 ANFAEQPKLMSAALVKAAKQFDALVAALPL--AEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELK 117 (137)
Q Consensus 50 ~~f~~~~~ela~dii~kakqIe~LIdsLPg--~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~ 117 (137)
..|...+.+|-.=|..+... +.+.|. --..-+.++..++.++.++......+......+..|..
T Consensus 4 ~~f~~~~~~l~~Wl~~~e~~----l~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~ 69 (105)
T PF00435_consen 4 QQFQQEADELLDWLQETEAK----LSSSEPGSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLID 69 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HCSCTHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HhCCCCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666666655443 355544 22333556778888888888888888888888777743
No 28
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=43.33 E-value=1.2e+02 Score=24.33 Aligned_cols=64 Identities=25% Similarity=0.310 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 63 LVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQELFSQA 126 (137)
Q Consensus 63 ii~kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~i 126 (137)
.=.--.+|.+|-+.||.-+...+.=-++.+.|+.+....+..+.....+-..+...++..+..+
T Consensus 139 ~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~~~~L 202 (205)
T KOG1003|consen 139 EEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDETLQEL 202 (205)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 3344567888889999987777666679999999998888888888777777777766665543
No 29
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=42.40 E-value=65 Score=26.95 Aligned_cols=43 Identities=26% Similarity=0.391 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 83 GEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQELFSQ 125 (137)
Q Consensus 83 see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~ 125 (137)
-++.-.+.+.+|+.|..++.+++...-.+.+.+-..-....+.
T Consensus 58 Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~ 100 (314)
T PF04111_consen 58 EEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWRE 100 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666666666666666666555555554444444333
No 30
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=41.48 E-value=1e+02 Score=20.43 Aligned_cols=38 Identities=13% Similarity=0.251 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 90 RIAELQSENDAVGQDLQRQLEAAEKELKQVQELFSQAA 127 (137)
Q Consensus 90 ~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~ia 127 (137)
.++++++-.+..+++.....++...++..++..+.++-
T Consensus 27 ~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~ 64 (90)
T PF06103_consen 27 TLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVN 64 (90)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555555543
No 31
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=40.55 E-value=78 Score=23.84 Aligned_cols=69 Identities=12% Similarity=0.011 Sum_probs=51.1
Q ss_pred chHhhhhhHHHHHHHHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 48 DAANFAEQPKLMSAALVKAAKQFDALVAALPLAE-GGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKEL 116 (137)
Q Consensus 48 ~~~~f~~~~~ela~dii~kakqIe~LIdsLPg~~-~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll 116 (137)
-.+.|+..++.+-.....+..+++.|.+--..++ ++-+.|.+.|.--.++++...++-++..++..++-
T Consensus 85 ~~~~w~~~~~~~~~~~~L~~~d~e~L~~lg~~LG~~D~~~Q~k~i~l~~~~L~~~~~~a~~~~~~~~Kly 154 (170)
T PF09548_consen 85 FAEAWEEAVEKLLKESALKKEDKEILLELGKSLGYSDREMQEKHIELYLEQLEQQLEEAREEAKKKGKLY 154 (170)
T ss_pred HHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH
Confidence 4467888888888888889999999999888886 55678888777766666666665555555554443
No 32
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=40.20 E-value=1.1e+02 Score=22.35 Aligned_cols=52 Identities=21% Similarity=0.258 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHhcc
Q 032610 83 GEEAQLKRIAELQSENDAVGQDLQRQL-------------EAAEKELKQVQELFSQAADNCLNLK 134 (137)
Q Consensus 83 see~Q~~~i~~L~~E~~~~~~el~~~v-------------~e~e~ll~~v~~~l~~ia~~~l~~r 134 (137)
|-|+=.++|.+|+-||+..-+.+.... .++|.++...-+.|...|...++.|
T Consensus 4 t~EeLaaeL~kLqmENk~LKkkl~~~~~p~~~p~~~~LTp~qKe~~I~s~~~~Lss~A~~KIe~k 68 (118)
T PF05812_consen 4 TMEELAAELQKLQMENKALKKKLRQSVGPGPSPDDEVLTPAQKEAMITSAVSKLSSQASKKIEAK 68 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT---S-TT--B--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556799999999999999988888 4788888888888888777666543
No 33
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=39.66 E-value=1.1e+02 Score=20.18 Aligned_cols=62 Identities=13% Similarity=0.136 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 59 MSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQ 120 (137)
Q Consensus 59 la~dii~kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~ 120 (137)
|-.-|..|--+|..|..--=.+...+-.....|+.|...+.+.+......-.+.+.....+.
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~ 64 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELE 64 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666677777776554554455555567888887777776665554444444444433
No 34
>KOG4031 consensus Vesicle coat protein clathrin, light chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.37 E-value=1.3e+02 Score=24.31 Aligned_cols=40 Identities=20% Similarity=0.347 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 032610 85 EAQLKRIAELQSENDAVGQDLQ-RQLEAAEKELKQVQELFS 124 (137)
Q Consensus 85 e~Q~~~i~~L~~E~~~~~~el~-~~v~e~e~ll~~v~~~l~ 124 (137)
++|++||.++....+...++++ .++++-+.+..+....+.
T Consensus 113 eeQ~~rl~ekD~~sek~k~ElrekAkKelddwy~~~~ek~~ 153 (216)
T KOG4031|consen 113 EEQMKRLQEKDEASEKLKEELREKAKKELDDWYDQQNEKLE 153 (216)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999988888877765 467777888877776654
No 35
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=38.97 E-value=1.2e+02 Score=25.64 Aligned_cols=42 Identities=31% Similarity=0.500 Sum_probs=30.9
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 85 EAQLKRIAE--LQSENDAVGQDLQRQLEAAEKELKQVQELFSQAAD 128 (137)
Q Consensus 85 e~Q~~~i~~--L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~ia~ 128 (137)
..|+.|+++ .++|=+.++++| ++|||.+..++++.++..+-.
T Consensus 95 ksQL~RMrEDWIEEECHRVEAQL--ALKEARkEIkQLkQvieTmrs 138 (305)
T PF15290_consen 95 KSQLARMREDWIEEECHRVEAQL--ALKEARKEIKQLKQVIETMRS 138 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHh
Confidence 346666665 567777777765 688898889998888876644
No 36
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=38.41 E-value=1.2e+02 Score=25.49 Aligned_cols=41 Identities=20% Similarity=0.177 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 032610 54 EQPKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAEL 94 (137)
Q Consensus 54 ~~~~ela~dii~kakqIe~LIdsLPg~~~see~Q~~~i~~L 94 (137)
.+...|+..+-...++|..+|++|..+-.+-..-...+.++
T Consensus 183 ~~l~~~~~~ln~~~~~i~~~i~~l~~~~~~~~~~~~~l~~~ 223 (359)
T COG1463 183 DNLAQFTDALNARDGDIGALIANLNQLLDSLAAASDQLDRL 223 (359)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 45666777777777777777777766544333333333333
No 37
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=37.81 E-value=83 Score=25.23 Aligned_cols=7 Identities=14% Similarity=0.354 Sum_probs=2.6
Q ss_pred HHHHHHh
Q 032610 70 FDALVAA 76 (137)
Q Consensus 70 Ie~LIds 76 (137)
|..+++.
T Consensus 169 l~~~l~~ 175 (291)
T TIGR00996 169 LRNLLDG 175 (291)
T ss_pred HHHHHHH
Confidence 3333333
No 38
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=37.60 E-value=2.1e+02 Score=22.74 Aligned_cols=8 Identities=13% Similarity=0.052 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 032610 56 PKLMSAAL 63 (137)
Q Consensus 56 ~~ela~di 63 (137)
..+|...+
T Consensus 51 ~~~L~~e~ 58 (251)
T PF11932_consen 51 KQELLAEY 58 (251)
T ss_pred HHHHHHHH
Confidence 33333333
No 39
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=37.15 E-value=1.5e+02 Score=20.82 Aligned_cols=54 Identities=20% Similarity=0.250 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 62 ALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKEL 116 (137)
Q Consensus 62 dii~kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll 116 (137)
..-..-..+|.=+++||+-+.--+.+. +|.++..+++..+..++..=...+-|+
T Consensus 46 ~~~~Rl~~lE~~l~~LPt~~dv~~L~l-~l~el~G~~~~l~~~l~~v~~~~~lLl 99 (106)
T PF10805_consen 46 EHDRRLQALETKLEHLPTRDDVHDLQL-ELAELRGELKELSARLQGVSHQLDLLL 99 (106)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 345555678888999998643332222 555666666666555555444444443
No 40
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=37.09 E-value=1.9e+02 Score=22.13 Aligned_cols=61 Identities=16% Similarity=0.310 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 58 LMSAALVKAAKQFDALVAALPLAEGGEEAQ-LKRIAELQSENDAVGQDLQRQLEAAEKELKQVQELF 123 (137)
Q Consensus 58 ela~dii~kakqIe~LIdsLPg~~~see~Q-~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l 123 (137)
+++.+|+.+-+.+-..++.|... .+ ..+|..|..+........+..++.-......+..++
T Consensus 2 ~~~~~L~~~d~~L~~~L~~l~~h-----q~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~ 63 (188)
T PF10018_consen 2 ELAEDLIEADDELSSALEELQEH-----QENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLP 63 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888876432 11 348888888888777777766666655555555555
No 41
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=36.98 E-value=2.3e+02 Score=25.16 Aligned_cols=102 Identities=11% Similarity=0.215 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhHhhhcccCCCCCCCCCCCCCCCCCCcchHhhhhhHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHH
Q 032610 10 QINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAANFAEQPKLMSAALVKAAKQFDALVAALPLAEGGEEAQLK 89 (137)
Q Consensus 10 ~ldqLa~~f~~sig~L~~~a~~~~~~~~~~~~~~~~~~~~~~f~~~~~ela~dii~kakqIe~LIdsLPg~~~see~Q~~ 89 (137)
.|......||+++.-|..+ | ..+ .....+-...+.|+..|=..+.+++.+-... +..-+..+.
T Consensus 116 gl~~~l~~ff~a~~~la~~--P-----~~~-------~~r~~vl~~a~~La~~~n~~~~~L~~~~~~~---~~~i~~~V~ 178 (507)
T PRK07739 116 GLNKVLDQFWNSLQELSKN--P-----ENL-------GARSVVRQRAQALAETFNYLSQSLTDIQNDL---KSEIDVTVK 178 (507)
T ss_pred hHHHHHHHHHHHHHHHHhC--c-----CCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 3455677778887777443 1 100 0112233444444444444444444433321 112234455
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 032610 90 RIAELQSENDAVGQDLQRQLE---AAEKELKQVQELFSQAAD 128 (137)
Q Consensus 90 ~i~~L~~E~~~~~~el~~~v~---e~e~ll~~v~~~l~~ia~ 128 (137)
.+-.|-+++..++++...+-. .+-.|+.+-+.+|+.+++
T Consensus 179 ~iN~ll~~Ia~LN~~I~~~~~~g~~~ndLlDqRD~ll~~LS~ 220 (507)
T PRK07739 179 EINSLASQISDLNKQIAKVEPNGYLPNDLYDQRDLLLDELSK 220 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHh
Confidence 666666666666666554322 133577777777776665
No 42
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=36.83 E-value=83 Score=25.87 Aligned_cols=57 Identities=7% Similarity=0.100 Sum_probs=38.2
Q ss_pred HHHHHhHhhhcccCCC-CCCCC---CCCCCCCCCCcchHhhhhhHHHHHHHHHHHHHHHHHHHHhCCCC
Q 032610 16 GIAFNTFGTLQRDAPP-VRLSP---NYPEPPANPTEDAANFAEQPKLMSAALVKAAKQFDALVAALPLA 80 (137)
Q Consensus 16 ~~f~~sig~L~~~a~~-~~~~~---~~~~~~~~~~~~~~~f~~~~~ela~dii~kakqIe~LIdsLPg~ 80 (137)
.+|.++|.+|.++.=| .+|.. -+|..+=.+ +| .+|-|+-.-.++++|+..++..+|+
T Consensus 64 ~~fa~Av~iL~~~GlPr~~f~~l~d~Fp~dgLVs--SP------~eEkaR~~~~~eQ~le~tLs~mDGV 124 (246)
T COG4669 64 SDFAEAVEILNQNGLPRKKFTTLGDIFPKDGLVS--SP------TEEKARLNYAKEQQLEQTLSKMDGV 124 (246)
T ss_pred HHHHHHHHHHHhcCCCCCCCCcHHHhCCcccccC--Cc------HHHHHHHHHHHHHHHHHHHHhcCce
Confidence 5799999999887633 33321 123222111 22 7788899999999999999887775
No 43
>PHA03162 hypothetical protein; Provisional
Probab=35.33 E-value=1.9e+02 Score=21.67 Aligned_cols=56 Identities=23% Similarity=0.258 Sum_probs=39.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHhc
Q 032610 78 PLAEGGEEAQLKRIAELQSENDAVGQDLQRQ-------------LEAAEKELKQVQELFSQAADNCLNL 133 (137)
Q Consensus 78 Pg~~~see~Q~~~i~~L~~E~~~~~~el~~~-------------v~e~e~ll~~v~~~l~~ia~~~l~~ 133 (137)
|+-+-+.|+=.++|.+|+-||+..-+.+.+- =.++|.++...-+.|...|...++.
T Consensus 9 pk~~~tmEeLaaeL~kLqmENK~LKkkl~~~~~~~~~p~d~~LTp~qKea~I~s~v~~Lts~A~kKIe~ 77 (135)
T PHA03162 9 PKAQPTMEDLAAEIAKLQLENKALKKKIKEGTDDDPLPGDPILTPAAKEAMIGAATAALTRQAAKKIEA 77 (135)
T ss_pred CccCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777788888999987777776443 2456677777777776666655543
No 44
>PRK08871 flgK flagellar hook-associated protein FlgK; Validated
Probab=35.27 E-value=2.3e+02 Score=26.13 Aligned_cols=41 Identities=15% Similarity=0.230 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 88 LKRIAELQSENDAVGQDLQRQLEAAEKELKQVQELFSQAAD 128 (137)
Q Consensus 88 ~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~ia~ 128 (137)
+.+|-.|-+++.+++++....-...-.|+.+-+.+|+.+++
T Consensus 168 V~~IN~l~~qIA~LN~qI~~~~g~pNdLlDqRD~ll~eLS~ 208 (626)
T PRK08871 168 VERINQIALEIRDIHRLMMRTPGPHNDLMDQHEKLVKELSQ 208 (626)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHh
Confidence 44555555555555555433212245677777777777765
No 45
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=35.11 E-value=2.6e+02 Score=23.13 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 032610 85 EAQLKRIAELQSENDAVGQDLQRQLE----AAEKELKQVQELFSQAAD 128 (137)
Q Consensus 85 e~Q~~~i~~L~~E~~~~~~el~~~v~----e~e~ll~~v~~~l~~ia~ 128 (137)
+..+..+-.|-+++..++++....-. .+-.|+.+-+.+|+.+++
T Consensus 162 ~~~V~~iN~ll~~Ia~lN~~I~~~~~~~g~~~n~L~DqRD~ll~~LS~ 209 (322)
T TIGR02492 162 KSAVTEINSLLKQIASLNKEIQQVEAKSGQDANDLLDQRDLLLKELSQ 209 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHhHHHHHHHHHHHHh
Confidence 34455666666666666665554321 234577777777776665
No 46
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=35.08 E-value=1.3e+02 Score=25.08 Aligned_cols=45 Identities=22% Similarity=0.203 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032610 88 LKRIAELQSENDAVGQDLQRQLEAAEKELKQVQELFSQAADNCLN 132 (137)
Q Consensus 88 ~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~ia~~~l~ 132 (137)
++||.+|++.-+..-.+....-.+.-.|.+.|...+..|+.++-+
T Consensus 226 LdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~~hi~n 270 (279)
T KOG0837|consen 226 LDRISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQKVMEHIHN 270 (279)
T ss_pred HHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 446666666665555555555556666666777777777666544
No 47
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=35.04 E-value=1.3e+02 Score=26.72 Aligned_cols=73 Identities=15% Similarity=0.106 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-CC------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 56 PKLMSAALVKAAKQFDALVAA-LP------------LAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQEL 122 (137)
Q Consensus 56 ~~ela~dii~kakqIe~LIds-LP------------g~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~ 122 (137)
.-+.+.+.+.+-+.+.-..+. =| .+...|+.+...+++|+++..++...+.+.-.+|+++..+-...
T Consensus 151 e~~~~~~e~~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~ 230 (447)
T KOG2751|consen 151 EVEDAEDEVDTYKACLQRLEQQNQDVSEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQY 230 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666555433322 11 12233444556777777777777777777777777777776666
Q ss_pred HHHHHH
Q 032610 123 FSQAAD 128 (137)
Q Consensus 123 l~~ia~ 128 (137)
.+....
T Consensus 231 ~~ey~~ 236 (447)
T KOG2751|consen 231 WREYNN 236 (447)
T ss_pred HHHHHH
Confidence 555443
No 48
>TIGR01542 A118_put_portal phage portal protein, putative, A118 family. This model represents a family of phage minor structural proteins. The protein is suggested to be the head-tail connector, or portal protein, on the basis of its position in the phage gene order, its presence in mature phage, its size, and its conservation across a number of complete genomes of tailed phage that lack other candidate portal proteins. Several other known portal protein families lack clear homology to this family and to each other.
Probab=35.02 E-value=2.1e+02 Score=25.47 Aligned_cols=89 Identities=7% Similarity=0.050 Sum_probs=47.7
Q ss_pred chhhHHHHHHHHHHHHHHHhHhhhcccC--CCC--CCCCCCCCCCCCCCcchHhhhhhHHHHHHHHHHHHHHHHHHHHhC
Q 032610 2 DIISQLQEQINQIAGIAFNTFGTLQRDA--PPV--RLSPNYPEPPANPTEDAANFAEQPKLMSAALVKAAKQFDALVAAL 77 (137)
Q Consensus 2 DrLTQLQd~ldqLa~~f~~sig~L~~~a--~~~--~~~~~~~~~~~~~~~~~~~f~~~~~ela~dii~kakqIe~LIdsL 77 (137)
+..+.|++||.+|+..+.-.-.++.... ++. ++.=+++++-. ++.-.+++...+.++.-++.+. .-|...
T Consensus 378 ~~~~~l~~aL~~Lv~ail~~~~~~~~~~~~~~~~~~v~v~fdDsi~--~D~e~e~~~~~~~vaaG~ms~~----~yl~k~ 451 (476)
T TIGR01542 378 SHSQLVEQGIKELIVSILEVAKFIEAYSGEVVELDTITIDFDDGVF--QDEDTTINRYTNAVNAGMIPLK----IALQRA 451 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCceEEecCCccc--cCHHHHHHHHHHHHHcCCCCHH----HHHHHc
Confidence 4678999999999988866655442221 110 01101122111 1122233444555555555444 455558
Q ss_pred CCCCCCHHHHHHHHHHHHHHH
Q 032610 78 PLAEGGEEAQLKRIAELQSEN 98 (137)
Q Consensus 78 Pg~~~see~Q~~~i~~L~~E~ 98 (137)
||+ |+++=.+.+.++.+|+
T Consensus 452 yg~--~eeeA~~~~~~i~~e~ 470 (476)
T TIGR01542 452 WNI--TEEEADEWAAMIAKEK 470 (476)
T ss_pred cCC--CHHHHHHHHHHHhhhh
Confidence 887 6666666666666665
No 49
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=34.81 E-value=1.2e+02 Score=20.65 Aligned_cols=61 Identities=11% Similarity=0.177 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 60 SAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQELFSQAAD 128 (137)
Q Consensus 60 a~dii~kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~ia~ 128 (137)
..++-.....++.++.+...+..+.. -..+...+..++...+...+.-|+.++.++..+..
T Consensus 7 ~~ev~~sl~~l~~~~~~~~~~~~~~~--------~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~ 67 (97)
T PF09177_consen 7 KDEVQSSLDRLESLYRRWQRLRSDTS--------SSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEK 67 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHCC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCC--------CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455555555554443321111 33456666777777777788888888877776544
No 50
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=34.60 E-value=1.4e+02 Score=19.91 Aligned_cols=66 Identities=12% Similarity=0.123 Sum_probs=47.3
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHhCCCC--CCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 50 ANFAEQPKLMSAALVKAAKQFDALVAALPLA--EGGE-EAQLKRIAELQSENDAVGQDLQRQLEAAEKE 115 (137)
Q Consensus 50 ~~f~~~~~ela~dii~kakqIe~LIdsLPg~--~~se-e~Q~~~i~~L~~E~~~~~~el~~~v~e~e~l 115 (137)
..+++.+..+...+-..++.|...|..|+.. ..+. ..+.-...+|..+...+-.+++..-++..+.
T Consensus 29 ~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~~~~~~~~~~~k~~~~KL~~df~~~l~~fq~~q~~~~~~ 97 (102)
T PF14523_consen 29 QELREKIHQLIQKTNQLIKEISELLKKLNSLSSDRSNDRQQKLQREKLSRDFKEALQEFQKAQRRYAEK 97 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888888888888999999999998888 2222 3333467778888888888877776665543
No 51
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=34.46 E-value=2.1e+02 Score=22.14 Aligned_cols=39 Identities=26% Similarity=0.308 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 032610 81 EGGEEAQLKRIAELQSENDAVGQ---DLQRQLEAAEKELKQVQELF 123 (137)
Q Consensus 81 ~~see~Q~~~i~~L~~E~~~~~~---el~~~v~e~e~ll~~v~~~l 123 (137)
.-+|+++.+ |..|+..++. -|++++..++.....++..|
T Consensus 25 ~LsEeE~ee----Lr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 25 GLSEEEREE----LRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred cCCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 346666643 3344444444 47788888888888877764
No 52
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=34.42 E-value=2.5e+02 Score=22.77 Aligned_cols=74 Identities=9% Similarity=0.041 Sum_probs=50.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 54 EQPKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQELFSQAA 127 (137)
Q Consensus 54 ~~~~ela~dii~kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~ia 127 (137)
.+...++..+...+.+|...+++++..-.+=.+|...|..|-.....+.......+..-..-|..+=..+.-++
T Consensus 59 ~~l~~v~~~~a~aapdL~~~l~~~~~~s~tL~~~~~~L~~lL~~~~~~a~~~~~~l~~n~~~L~~~~~~L~p~~ 132 (267)
T PF11887_consen 59 RNLADVADTYADAAPDLLDALDNLTTTSRTLVDQRQQLDALLLSATGLADTGTDFLADNRDNLIRALDDLRPTT 132 (267)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34556677777777777777777777777777777777777777777777777777766555555444444443
No 53
>PF13093 FTA4: Kinetochore complex Fta4 of Sim4 subunit, or CENP-50
Probab=33.82 E-value=1.6e+02 Score=23.42 Aligned_cols=53 Identities=19% Similarity=0.224 Sum_probs=34.3
Q ss_pred HHHHHhCCCCC--------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 71 DALVAALPLAE--------GGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQELFS 124 (137)
Q Consensus 71 e~LIdsLPg~~--------~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~ 124 (137)
...|++||..- ...++..++-.+|-..+.+..++++..-.+.+ .|+.++.+|.
T Consensus 116 ~~~I~~LP~~w~~~~~~~~~~~~e~~~rY~~l~~~L~~l~~~r~~~~~rl~-~lr~L~~lLe 176 (213)
T PF13093_consen 116 PENIEELPESWPRQQEQDEDASPEEAERYAELRERLIELSEQRQYLQQRLE-YLRRLRSLLE 176 (213)
T ss_pred HhHHHHCCchhhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcc
Confidence 67888898851 12234456788888888888877776655443 4555666553
No 54
>PF14992 TMCO5: TMCO5 family
Probab=33.36 E-value=2.9e+02 Score=23.16 Aligned_cols=98 Identities=11% Similarity=0.068 Sum_probs=63.7
Q ss_pred HHHHHHHHHhHhhhcccCCC--CCCCCCCCCCCCCCCcchHhhhhhHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHH
Q 032610 12 NQIAGIAFNTFGTLQRDAPP--VRLSPNYPEPPANPTEDAANFAEQPKLMSAALVKAAKQFDALVAALPLAEGGEEAQLK 89 (137)
Q Consensus 12 dqLa~~f~~sig~L~~~a~~--~~~~~~~~~~~~~~~~~~~~f~~~~~ela~dii~kakqIe~LIdsLPg~~~see~Q~~ 89 (137)
..=+++-.-+|.=||+.-+- ..+....|. ....++..++..+-+-...+...++|..+.+..=.+..-.++|..
T Consensus 76 E~~ne~l~~~~~elq~k~~e~~~~~~~e~~~----~~~~lq~sk~~lqql~~~~~~qE~ei~kve~d~~~v~~l~eDq~~ 151 (280)
T PF14992_consen 76 EKENEHLSKSVQELQRKQDEQETNVQCEDPQ----LSQSLQFSKNKLQQLLESCASQEKEIAKVEDDYQQVHQLCEDQAN 151 (280)
T ss_pred hhhhHhhhhhhhhhhhhhccccCCCCCCccc----hhcccHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666666666665221 111111121 112344556778888889999999999998855556666788889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 90 RIAELQSENDAVGQDLQRQLEAAE 113 (137)
Q Consensus 90 ~i~~L~~E~~~~~~el~~~v~e~e 113 (137)
-|++|.+.++.++.++.-.+-+++
T Consensus 152 ~i~klkE~L~rmE~ekE~~lLe~e 175 (280)
T PF14992_consen 152 EIKKLKEKLRRMEEEKEMLLLEKE 175 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988888886665555544
No 55
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=32.54 E-value=1.3e+02 Score=22.79 Aligned_cols=69 Identities=10% Similarity=-0.032 Sum_probs=48.3
Q ss_pred chHhhhhhHHHHHHHHHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 48 DAANFAEQPKLMSAALVKAAKQFDALVAALPLAEGG-EEAQLKRIAELQSENDAVGQDLQRQLEAAEKEL 116 (137)
Q Consensus 48 ~~~~f~~~~~ela~dii~kakqIe~LIdsLPg~~~s-ee~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll 116 (137)
.++.|+...++.-.....+..+++.|.+-=..++.+ -+.|.+.|.--.++++....+.++..++..++-
T Consensus 85 ~~~~w~~~~~~~~~~~~L~~~d~eiL~~lG~~LG~~D~e~Q~k~i~L~~~~L~~~~~~a~~~~~k~~Kmy 154 (170)
T TIGR02833 85 VYEAWKKALNEVWKQTALQKSEKEILLQFGKTLGESDREGQQKHINLTLEHLERQLTEAEDEQKKNEKMY 154 (170)
T ss_pred HHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH
Confidence 457788899998888999999999999877777644 567777666555555555555555555444443
No 56
>PRK08147 flgK flagellar hook-associated protein FlgK; Validated
Probab=31.90 E-value=3.7e+02 Score=23.96 Aligned_cols=43 Identities=14% Similarity=0.252 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Q 032610 86 AQLKRIAELQSENDAVGQDLQRQLE-----AAEKELKQVQELFSQAAD 128 (137)
Q Consensus 86 ~Q~~~i~~L~~E~~~~~~el~~~v~-----e~e~ll~~v~~~l~~ia~ 128 (137)
..+.+|-.|-+++..++++....-. .+-.|+.+-+.+|+.+++
T Consensus 164 ~~V~~iN~l~~~Ia~LN~~I~~~~~~~~g~~~ndL~DqRD~ll~eLS~ 211 (547)
T PRK08147 164 SSVDQINNYAKQIASLNDQITRLTGVGAGASPNDLLDQRDQLVSELNQ 211 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHh
Confidence 3455666666666666666554321 234677777777777665
No 57
>PF01540 Lipoprotein_7: Adhesin lipoprotein; InterPro: IPR002520 This family consists of the p50 and variable adherence-associated antigen (Vaa) adhesins from Mycoplasma hominis. M. hominis is a mycoplasma associated with human urogenital diseases, pneumonia, and septic arthritis []. An adhesin is a cell surface molecule that mediates adhesion to other cells or to the surrounding surface or substrate. The Vaa antigen is a 50kDa surface lipoprotein that has four tandem repetitive DNA sequences encoding a periodic peptide structure, and is highly immunogenic in the human host []. p50 is also a 50kDa lipoprotein, having three repeats A,B and C, that may be a tetramer of 191kDa in its native environment [].
Probab=31.52 E-value=33 Score=28.98 Aligned_cols=33 Identities=21% Similarity=0.401 Sum_probs=28.2
Q ss_pred CcchHhhhhhHHHHHHHHHHHHHHHHHHHHhCC
Q 032610 46 TEDAANFAEQPKLMSAALVKAAKQFDALVAALP 78 (137)
Q Consensus 46 ~~~~~~f~~~~~ela~dii~kakqIe~LIdsLP 78 (137)
.++...|.+..+.||++|..|+++|+.++..-.
T Consensus 276 ~~e~k~fK~qlE~ladqLl~ks~~id~f~tvt~ 308 (353)
T PF01540_consen 276 KEEMKKFKNQLENLADQLLEKSRQIDEFVTVTS 308 (353)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhcccchheeeec
Confidence 456788999999999999999999998876443
No 58
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=31.31 E-value=2.8e+02 Score=25.98 Aligned_cols=74 Identities=12% Similarity=0.198 Sum_probs=52.4
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 50 ANFAEQPKLMSAALVKAAKQFDALVAALPLAEGGEEAQL---KRIAELQSENDAVGQDLQRQLEAAEKELKQVQELF 123 (137)
Q Consensus 50 ~~f~~~~~ela~dii~kakqIe~LIdsLPg~~~see~Q~---~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l 123 (137)
+.+.....+|-+-|...-+-|+.|.+.|-++......-. ..+..++.++...+.+|.++-++.+.|-.++..+.
T Consensus 432 e~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 432 ERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888999999999999999999988765554322 25666777777777777776666666655555443
No 59
>PRK07191 flgK flagellar hook-associated protein FlgK; Validated
Probab=30.86 E-value=3e+02 Score=24.02 Aligned_cols=67 Identities=15% Similarity=0.135 Sum_probs=33.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 032610 52 FAEQPKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLE---AAEKELKQVQELFSQAAD 128 (137)
Q Consensus 52 f~~~~~ela~dii~kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~---e~e~ll~~v~~~l~~ia~ 128 (137)
+....+.++..|-...++++.=| +.++.+|-.|-+++..++++....-. .+-.|+.+-+.+|+.+++
T Consensus 139 la~~~n~~~~~l~~~~~~~~~~i----------~~~V~~iN~ll~~Ia~LN~~I~~~~~~g~~~ndL~DqRD~ll~eLS~ 208 (456)
T PRK07191 139 MALRFNNVNNFIVQQKKSIGQQR----------DATVKQINSLTRSIADYNQKILKNRSDGNNISDLLDQRDLQIKKLSG 208 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHh
Confidence 33444444444444444444333 34455666666666555555543221 123566666666666654
No 60
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=30.79 E-value=2.9e+02 Score=26.08 Aligned_cols=13 Identities=15% Similarity=0.383 Sum_probs=8.0
Q ss_pred HHHHHHHHhCCCC
Q 032610 68 KQFDALVAALPLA 80 (137)
Q Consensus 68 kqIe~LIdsLPg~ 80 (137)
.+++.||..|=..
T Consensus 511 ~~~~~li~~L~~~ 523 (771)
T TIGR01069 511 EEINVLIEKLSAL 523 (771)
T ss_pred HHHHHHHHHHHHH
Confidence 3566777776543
No 61
>PF10073 DUF2312: Uncharacterized protein conserved in bacteria (DUF2312); InterPro: IPR018753 This entry is represented by Azospirillum phage Cd, Gp10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family of hypothetical bacterial proteins have no known function.
Probab=30.54 E-value=1.3e+02 Score=20.23 Aligned_cols=27 Identities=26% Similarity=0.500 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 88 LKRIAELQSENDAVGQDLQRQLEAAEK 114 (137)
Q Consensus 88 ~~~i~~L~~E~~~~~~el~~~v~e~e~ 114 (137)
.+||.+|++|-+.......++-.||..
T Consensus 10 ieRiErLEeEk~~i~~dikdVyaEAK~ 36 (74)
T PF10073_consen 10 IERIERLEEEKKAISDDIKDVYAEAKG 36 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 458999999999999999888888764
No 62
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=30.28 E-value=1.3e+02 Score=20.86 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 90 RIAELQSENDAVGQDLQRQLEAAEKELKQV 119 (137)
Q Consensus 90 ~i~~L~~E~~~~~~el~~~v~e~e~ll~~v 119 (137)
.+..|..|++....++.....|+..|++-+
T Consensus 57 e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~ll 86 (87)
T PF12709_consen 57 ENKALKRENEQLKKKLDTEREEKQELLKLL 86 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444556666666666667777777776643
No 63
>PF12290 DUF3802: Protein of unknown function (DUF3802); InterPro: IPR020979 This family of proteins is found in bacteria and are typically between 114 and 143 amino acids in length. There is a conserved KNLFD sequence motif. The annotation with this family suggests that it may be the B subunit of bacterial type IIA DNA topoisomerase but there is no evidence to support this annotation.
Probab=29.85 E-value=1.4e+02 Score=21.78 Aligned_cols=26 Identities=8% Similarity=0.164 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 103 QDLQRQLEAAEKELKQVQELFSQAAD 128 (137)
Q Consensus 103 ~el~~~v~e~e~ll~~v~~~l~~ia~ 128 (137)
..|-..++|++.....+++.|..+..
T Consensus 60 ~~R~~iirE~Daiv~DLeEVLa~V~~ 85 (113)
T PF12290_consen 60 SQRFQIIREADAIVYDLEEVLASVWN 85 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34567788888888888888877754
No 64
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=29.46 E-value=2.2e+02 Score=20.63 Aligned_cols=77 Identities=17% Similarity=0.208 Sum_probs=50.6
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHH-HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 50 ANFAEQPKLMSAALVKAAKQFDALVAALPLAEGGEEAQ-LK------RIAELQSENDAVGQDLQRQLEAAEKELKQVQEL 122 (137)
Q Consensus 50 ~~f~~~~~ela~dii~kakqIe~LIdsLPg~~~see~Q-~~------~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~ 122 (137)
....+.|.+|+..|-.--+-+..+|+.+-+....-+.+ ++ +++...++.+...+.++..|.++...|++++.-
T Consensus 23 ~~Lk~ec~~F~~ki~~F~~iv~~~~~~~~~~A~~VE~eKlkAIG~RN~l~s~~k~R~~~~q~lq~~I~Ek~~eLERl~~E 102 (120)
T PF14931_consen 23 QELKEECKEFVEKISEFQKIVKGFIEILDELAKRVENEKLKAIGARNLLKSEAKQREAQQQQLQALIAEKKMELERLRSE 102 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567788888888777777777777766553333322 22 455566666667777888888888888887755
Q ss_pred HHHH
Q 032610 123 FSQA 126 (137)
Q Consensus 123 l~~i 126 (137)
+..+
T Consensus 103 ~~sL 106 (120)
T PF14931_consen 103 YESL 106 (120)
T ss_pred HHHH
Confidence 4433
No 65
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=29.31 E-value=1.8e+02 Score=23.82 Aligned_cols=34 Identities=24% Similarity=0.231 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 89 KRIAELQSENDAVGQDLQRQLEAAEKELKQVQEL 122 (137)
Q Consensus 89 ~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~ 122 (137)
+.|+.|++.++.++.-|-.++-.|...|+.|..+
T Consensus 88 ~~IQqLqk~LK~aE~iLtta~fqA~qKLksi~~A 121 (272)
T KOG4552|consen 88 EVIQQLQKNLKSAEVILTTACFQANQKLKSIKEA 121 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888888888888888888888888888765
No 66
>PRK01059 ATP:guanido phosphotransferase; Provisional
Probab=29.10 E-value=2e+02 Score=24.62 Aligned_cols=119 Identities=11% Similarity=0.113 Sum_probs=71.9
Q ss_pred chhhHHHHHHHH-HHHHHHHhHhhhcccCCCCCCCCCCCCCC--CCCCcchHhhhhhHHHHHHHHHHHHHHHHHHHHhCC
Q 032610 2 DIISQLQEQINQ-IAGIAFNTFGTLQRDAPPVRLSPNYPEPP--ANPTEDAANFAEQPKLMSAALVKAAKQFDALVAALP 78 (137)
Q Consensus 2 DrLTQLQd~ldq-La~~f~~sig~L~~~a~~~~~~~~~~~~~--~~~~~~~~~f~~~~~ela~dii~kakqIe~LIdsLP 78 (137)
+|+.++-+.|++ |-..|-.-+|||..+ |..++.+.-.+. ..|.-.. ...+ ..|+...+++-.=+..+-
T Consensus 138 ~~~~~id~~Le~~l~fAfd~~~GYLTsc--PtNlGTGlRaSV~lhLP~L~~------~~~i-~~i~~~~~~lGl~vRG~y 208 (346)
T PRK01059 138 EKANQIDDLLEEKLDYAFDEKLGYLTSC--PTNVGTGLRASVMLHLPALVL------TKRI-NRILQAINQLGLTVRGIY 208 (346)
T ss_pred HHHHHHHHHHHhhccccccCCeEEEeeC--CCCCCcceEEEEEEEccccCc------chhH-HHHHHHHHhcCeEEeecC
Confidence 345555566655 445666778999766 666765542211 1222110 1112 445555555544444454
Q ss_pred CC-----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 032610 79 LA-----------------EGGEEAQLKRIAELQSENDAVGQDLQRQLEA--AEKELKQVQELFSQAADN 129 (137)
Q Consensus 79 g~-----------------~~see~Q~~~i~~L~~E~~~~~~el~~~v~e--~e~ll~~v~~~l~~ia~~ 129 (137)
|. +.||++-.+.+...-.++-+.|...++.+.+ ..++-.+|-.++.-+...
T Consensus 209 Ge~se~~G~iy~ISNq~tLG~tE~eii~~l~~~v~~ii~~E~~~R~~L~~~~~~~leD~v~Rs~GiL~~a 278 (346)
T PRK01059 209 GEGSEALGNIYQISNQITLGKSEEEIISNLRSVVNQIISQERAAREKLVKENKIELEDRVYRSYGILTNA 278 (346)
T ss_pred CCCCcccCCEEEEEccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 44 4788999999999999998888888888765 456666666666555443
No 67
>PRK13694 hypothetical protein; Provisional
Probab=28.94 E-value=1.4e+02 Score=20.63 Aligned_cols=27 Identities=22% Similarity=0.478 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 88 LKRIAELQSENDAVGQDLQRQLEAAEK 114 (137)
Q Consensus 88 ~~~i~~L~~E~~~~~~el~~~v~e~e~ 114 (137)
.+||.+|++|-+.......++-.||..
T Consensus 18 IERIERLEeEkk~i~~dikdVyaEAK~ 44 (83)
T PRK13694 18 IERIERLEEEKKTISDDIKDVYAEAKG 44 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 349999999999999999888888764
No 68
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=28.89 E-value=2.7e+02 Score=25.06 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 032610 103 QDLQRQLEAAEKELKQVQELF 123 (137)
Q Consensus 103 ~el~~~v~e~e~ll~~v~~~l 123 (137)
+.++.+|++.+..++.++.-+
T Consensus 100 ~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 100 GDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 69
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=28.76 E-value=6e+02 Score=25.37 Aligned_cols=72 Identities=15% Similarity=0.119 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Q 032610 56 PKLMSAALVKAAKQFDALVAALPLAEGG--EEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQEL---FSQAA 127 (137)
Q Consensus 56 ~~ela~dii~kakqIe~LIdsLPg~~~s--ee~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~---l~~ia 127 (137)
+..+..++....++|+.|-..+++-+.+ -++=-..+..++.++..+..++.....+.+.+-.+|..+ +..+-
T Consensus 794 i~r~~~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~ 870 (1311)
T TIGR00606 794 MERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELK 870 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445788888899999999999976542 222233566666666666665555577777666666666 55443
No 70
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=28.71 E-value=1.6e+02 Score=22.37 Aligned_cols=69 Identities=10% Similarity=0.012 Sum_probs=48.2
Q ss_pred chHhhhhhHHHHHHHHHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 48 DAANFAEQPKLMSAALVKAAKQFDALVAALPLAEGG-EEAQLKRIAELQSENDAVGQDLQRQLEAAEKEL 116 (137)
Q Consensus 48 ~~~~f~~~~~ela~dii~kakqIe~LIdsLPg~~~s-ee~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll 116 (137)
..+.|+....+.-.....+..+++.|.+-=..++.+ -+.|.+.|.--.++++...++.++..++..++-
T Consensus 86 ~~eaw~~~~~~~~~~~~L~~~d~eiL~~lg~~LG~~D~e~Q~k~i~L~~e~L~~~~~~a~~~~~k~~Kmy 155 (171)
T PRK08307 86 AYEAWEKALEENWKNTALKKEDIEILLQFGKTLGQSDREGQQKHIRLALEHLEREEEEAEEEQKKNEKMY 155 (171)
T ss_pred HHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHH
Confidence 457788889988888999999999999877777654 567777665555555555555555555444443
No 71
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=28.71 E-value=3.7e+02 Score=22.97 Aligned_cols=35 Identities=9% Similarity=0.106 Sum_probs=28.6
Q ss_pred CCCcchHhhhhhHHHHHHHHHHHHHHHHHHHHhCC
Q 032610 44 NPTEDAANFAEQPKLMSAALVKAAKQFDALVAALP 78 (137)
Q Consensus 44 ~~~~~~~~f~~~~~ela~dii~kakqIe~LIdsLP 78 (137)
.++++|..|-...-..|..-..+++++-..|++.=
T Consensus 197 ~tp~~W~~~s~~ni~~a~~e~~~S~~LR~~i~~~l 231 (384)
T PF03148_consen 197 STPESWEEFSNENIQRAEKERQSSAQLREDIDSIL 231 (384)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578888888888899999999999988888653
No 72
>PHA02557 22 prohead core protein; Provisional
Probab=28.71 E-value=2.8e+02 Score=23.18 Aligned_cols=60 Identities=18% Similarity=0.268 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhCCCC----C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 66 AAKQFDALVAALPLA----E-GGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQELFSQ 125 (137)
Q Consensus 66 kakqIe~LIdsLPg~----~-~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~ 125 (137)
|+.-.+.+|..|-++ + .-++++..-+..|..++.+++.++...+.+--.+-+.+.+.-+.
T Consensus 113 Kaem~Es~l~GLK~lF~Ehnv~vpee~vdvV~em~~~L~E~e~~~~~l~~en~~l~e~i~~~~r~ 177 (271)
T PHA02557 113 KAELFESFLGGLKELFVEHNVVVPEEKVDVVAEMEEELDEMEEELNELFEENVALEEYINEVKRE 177 (271)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCCcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555431 1 44667888999999999999999998888887777777666443
No 73
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.67 E-value=1e+02 Score=22.60 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 90 RIAELQSENDAVGQDLQRQLEAAEKELKQV 119 (137)
Q Consensus 90 ~i~~L~~E~~~~~~el~~~v~e~e~ll~~v 119 (137)
..+.|+.||+++.+.++++|+.-+.|--.|
T Consensus 26 ~~~~le~ENee~~e~L~~kV~aLKsLs~dI 55 (118)
T KOG3385|consen 26 HLASLERENEEAAESLQQKVKALKSLSLDI 55 (118)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 456788999999999999998776664443
No 74
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=28.65 E-value=3.5e+02 Score=22.69 Aligned_cols=52 Identities=17% Similarity=0.136 Sum_probs=26.3
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 71 DALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQEL 122 (137)
Q Consensus 71 e~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~ 122 (137)
-.+|--+-..-.|.++|+.....=-+..+.-+.+-..+|.++..+|.++.++
T Consensus 171 G~~~~efn~~f~she~~l~dkekEl~sfK~sEeeNar~V~kAnsVldRmk~a 222 (311)
T PF04642_consen 171 GKLILEFNSVFLSHEDQLSDKEKELESFKRSEEENARAVEKANSVLDRMKEA 222 (311)
T ss_pred HHHHHHhhccccccccccccHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 3444444444455555544333322333334444556666777777666654
No 75
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=28.58 E-value=3.7e+02 Score=24.13 Aligned_cols=66 Identities=18% Similarity=0.142 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 54 EQPKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQELFSQA 126 (137)
Q Consensus 54 ~~~~ela~dii~kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~i 126 (137)
...+-|+..+-+|.++++.+-...= .=.++..++.++..+..-++...+++...|-+.|+.-|...
T Consensus 432 rYvdrl~~~L~qk~~~~~k~~~~~~-------~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~~ISk~ 497 (507)
T PF05600_consen 432 RYVDRLVESLQQKLKQEEKLRRKRE-------DLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEADISKR 497 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777776654321 11446677777777777788888888888777777766543
No 76
>PRK06799 flgK flagellar hook-associated protein FlgK; Validated
Probab=28.20 E-value=3.6e+02 Score=23.45 Aligned_cols=43 Identities=7% Similarity=0.188 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 032610 86 AQLKRIAELQSENDAVGQDLQRQLE-AAEKELKQVQELFSQAAD 128 (137)
Q Consensus 86 ~Q~~~i~~L~~E~~~~~~el~~~v~-e~e~ll~~v~~~l~~ia~ 128 (137)
.++.+|-.|-+++..++++....-. .+-.|+.+-+.+|+.+++
T Consensus 168 ~~V~~iN~ll~~Ia~LN~~I~~~~~~~~ndL~DqRD~ll~eLS~ 211 (431)
T PRK06799 168 AHVNEFNRLAKSLAEANKKIGQAGTQVPNQLLDERDRILTEMSK 211 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHh
Confidence 3444555555555555555443210 133566777777766654
No 77
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=26.82 E-value=4.1e+02 Score=24.19 Aligned_cols=39 Identities=18% Similarity=0.326 Sum_probs=18.6
Q ss_pred hCCCCCCCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 76 ALPLAEGGEEAQLK----RIAELQSENDAVGQDLQRQLEAAEKE 115 (137)
Q Consensus 76 sLPg~~~see~Q~~----~i~~L~~E~~~~~~el~~~v~e~e~l 115 (137)
++|. ..++.+-++ ++.+++++.++..+++.+..+.-..+
T Consensus 206 ~~p~-~~~p~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~ 248 (646)
T PRK05771 206 ELEE-EGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEE 248 (646)
T ss_pred cCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4676 555644332 44444445544444444444433333
No 78
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=26.48 E-value=3.2e+02 Score=22.78 Aligned_cols=69 Identities=17% Similarity=0.170 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 55 QPKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQELF 123 (137)
Q Consensus 55 ~~~ela~dii~kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l 123 (137)
.++.+...--.-..+||.++.+|=.-...=......|..|-+.|.+.-.+|...|.-++.++..+...+
T Consensus 85 ~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~~~~~~L~~~I~ag~~~~~~l~~~~ 153 (333)
T PF05816_consen 85 SLERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLYEKNWEYYQELEKYIAAGELKLEELEAEL 153 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444555677888888874432222222447888888999999999999999999999998764
No 79
>smart00542 FYRC "FY-rich" domain, C-terminal region. is sometimes closely juxtaposed with the N-terminal region (FYRN), but sometimes is far distant. Unknown function, but occurs frequently in chromatin-associated proteins.
Probab=26.29 E-value=41 Score=22.74 Aligned_cols=14 Identities=21% Similarity=0.254 Sum_probs=11.8
Q ss_pred HHHHHHHHhCCCCC
Q 032610 68 KQFDALVAALPLAE 81 (137)
Q Consensus 68 kqIe~LIdsLPg~~ 81 (137)
-.|-.||.+|||.+
T Consensus 58 p~V~~lie~Lpga~ 71 (86)
T smart00542 58 PAVVKLIEQLPGVH 71 (86)
T ss_pred HHHHHHHHhCCCch
Confidence 36778999999986
No 80
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=25.88 E-value=3.4e+02 Score=23.25 Aligned_cols=42 Identities=14% Similarity=0.151 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHH
Q 032610 57 KLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAV 101 (137)
Q Consensus 57 ~ela~dii~kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~ 101 (137)
++-.+....|..+...+-+. --++-..|.+++++|...++..
T Consensus 17 qethr~Y~qKleel~~lQ~~---C~ssI~~QkkrLk~L~~sLk~~ 58 (330)
T PF07851_consen 17 QETHRSYKQKLEELSKLQDK---CSSSISHQKKRLKELKKSLKRC 58 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444433332 2234455666666666665555
No 81
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=25.51 E-value=2.8e+02 Score=20.53 Aligned_cols=62 Identities=21% Similarity=0.270 Sum_probs=39.6
Q ss_pred chHhhhhhHHHHHHHHHHHHHHHHHHHHhCCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 48 DAANFAEQPKLMSAALVKAAKQFDALVAALPLAEGGE--EAQLKRIAELQSENDAVGQDLQRQL 109 (137)
Q Consensus 48 ~~~~f~~~~~ela~dii~kakqIe~LIdsLPg~~~se--e~Q~~~i~~L~~E~~~~~~el~~~v 109 (137)
.-..+...+..|...+..-.+.+..|-..|=.+..++ ++=...|..|..|+...+..+..--
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777777777777666655555544332 2224488888888888877776544
No 82
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=25.45 E-value=2.1e+02 Score=26.01 Aligned_cols=53 Identities=30% Similarity=0.276 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHHHhHhhhcccCCCCCCCCCCCCCCCCCCcchHhhhhhHHHHHHHHHHHHHHHHHHHHhC
Q 032610 5 SQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAANFAEQPKLMSAALVKAAKQFDALVAAL 77 (137)
Q Consensus 5 TQLQd~ldqLa~~f~~sig~L~~~a~~~~~~~~~~~~~~~~~~~~~~f~~~~~ela~dii~kakqIe~LIdsL 77 (137)
|||-.++++|.+-.-.+-.+|-+-... .+...+|..+|-.-++ -|||.||+.|
T Consensus 272 sqls~al~~lsdrak~a~e~l~~lr~m-----------------~~~iq~n~~ef~a~l~---~q~d~lid~l 324 (699)
T KOG4367|consen 272 SQLSQALNGLSDRAKEAKEFLVQLRNM-----------------VQQIQENSVEFEACLV---AQCDALIDAL 324 (699)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHhcchhHHHHHH---HHHHHHHHHH
Confidence 567777777766666555555332211 1223456666766655 3789999865
No 83
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=25.34 E-value=5.2e+02 Score=23.51 Aligned_cols=66 Identities=11% Similarity=0.063 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 57 KLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQEL 122 (137)
Q Consensus 57 ~ela~dii~kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~ 122 (137)
+.+=..|..-.++|..|-..|+..+.-.+...+++.+|.+++.++..++.+...+=+++-..+.++
T Consensus 566 ~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~ 631 (638)
T PRK10636 566 ARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQM 631 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777777777654322222233677888888888877777776666666555443
No 84
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.20 E-value=1.8e+02 Score=20.09 Aligned_cols=28 Identities=21% Similarity=0.467 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 88 LKRIAELQSENDAVGQDLQRQLEAAEKE 115 (137)
Q Consensus 88 ~~~i~~L~~E~~~~~~el~~~v~e~e~l 115 (137)
.+||.+|++|-+....+..++-.++...
T Consensus 20 IerIERlEeEk~~i~~dikdvy~eakg~ 47 (85)
T COG3750 20 IERIERLEEEKKTIADDIKDVYAEAKGH 47 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3489999999999999988888877643
No 85
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=24.98 E-value=4.5e+02 Score=23.66 Aligned_cols=46 Identities=13% Similarity=0.237 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 032610 90 RIAELQSENDAVGQDLQRQLEAAEKELKQVQELFSQAADNCLNLKK 135 (137)
Q Consensus 90 ~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~ia~~~l~~r~ 135 (137)
++.+|+..++...+...+.+..-+..-+++..-+..+|+.+|+.++
T Consensus 82 ~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~ile~k~ 127 (475)
T PRK10361 82 DLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRIFEHSN 127 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444445566667888888877643
No 86
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=24.91 E-value=1.3e+02 Score=23.48 Aligned_cols=41 Identities=17% Similarity=0.191 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 032610 96 SENDAVGQDLQRQLEAAEKELKQVQELFSQAADNCLNLKKP 136 (137)
Q Consensus 96 ~E~~~~~~el~~~v~e~e~ll~~v~~~l~~ia~~~l~~r~~ 136 (137)
+|.++|...+.+....=+...++|+.+++.|--.+|..|++
T Consensus 7 eEIq~Arn~ll~~y~gd~~~~~~IEaAYD~ILM~rL~~Rq~ 47 (194)
T PF11833_consen 7 EEIQAARNRLLAQYAGDEKSREAIEAAYDAILMERLRQRQK 47 (194)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 56667777777777777888899999999999889988864
No 87
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=24.85 E-value=2.4e+02 Score=19.40 Aligned_cols=36 Identities=14% Similarity=0.348 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 85 EAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQELFS 124 (137)
Q Consensus 85 e~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~ 124 (137)
...+..|..++.+. .+++.+|.+-+.+.+.++..+.
T Consensus 62 ~~~l~~Id~Ie~~V----~~LE~~v~~LD~ysk~LE~k~k 97 (99)
T PF10046_consen 62 QPYLQQIDQIEEQV----TELEQTVYELDEYSKELESKFK 97 (99)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhh
Confidence 34455666666555 5667777777777777776654
No 88
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=23.81 E-value=6e+02 Score=23.72 Aligned_cols=72 Identities=11% Similarity=0.141 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 032610 54 EQPKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLE---AAEKELKQVQELFSQAAD 128 (137)
Q Consensus 54 ~~~~ela~dii~kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~---e~e~ll~~v~~~l~~ia~ 128 (137)
...+.|+..+=....+++.+-... +..-+.++.+|-.|-+++.+++++...+-. ..-.|+.+-+.+|+.+++
T Consensus 134 ~~A~~La~~fn~~~~~L~~l~~~v---n~qI~~~V~~IN~l~~qIA~LN~qI~~~~~~G~~~NdLlDqRD~Ll~eLS~ 208 (676)
T PRK05683 134 TQAQGLSKRFNSLSSQLNQQNSNI---NSQLSAMTDQVNNLTTSIASYNKQIAQASASGATPNDLLDARDEAVRQLNE 208 (676)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHhHHHHHHHHHHHHh
Confidence 334444444444444444443322 122233455666666666666666544321 234677777777777765
No 89
>COG4345 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.72 E-value=3.5e+02 Score=21.21 Aligned_cols=43 Identities=9% Similarity=0.190 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 84 EEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQELFSQA 126 (137)
Q Consensus 84 ee~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~i 126 (137)
+.+=..++..-+.|.+.......+.+.+-+.+..++.++.+.|
T Consensus 120 ~~el~eK~~~~~~Everi~~~ieE~v~eLe~~a~~lke~~~~i 162 (181)
T COG4345 120 PKELEEKLADAMEEVERIEKTIEELVSELESLANKLKEVTDVI 162 (181)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444557888889999999999999999888888777666555
No 90
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=23.64 E-value=2.5e+02 Score=22.68 Aligned_cols=39 Identities=15% Similarity=0.196 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 88 LKRIAELQSENDAVGQDLQRQLEAAEKELKQVQELFSQA 126 (137)
Q Consensus 88 ~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~i 126 (137)
.+.+..|++|++....++..+-+..+.+.++.++.....
T Consensus 157 ~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~Ey 195 (216)
T KOG1962|consen 157 KADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEY 195 (216)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence 457778888888888888888888888888877765443
No 91
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=23.63 E-value=5.8e+02 Score=23.44 Aligned_cols=43 Identities=7% Similarity=0.159 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 032610 86 AQLKRIAELQSENDAVGQDLQRQLE---AAEKELKQVQELFSQAAD 128 (137)
Q Consensus 86 ~Q~~~i~~L~~E~~~~~~el~~~v~---e~e~ll~~v~~~l~~ia~ 128 (137)
.++.+|-.|-+++.+++++....-. .+-.|+.+-+.+|+.+++
T Consensus 175 ~~V~~iN~ll~qIa~LN~qI~~~~~~g~~~ndLlDqRD~ll~eLS~ 220 (627)
T PRK06665 175 ITVEEINNILRNIADLNEQIVKSQAMGDNPNDLLDRRDLLVDKLSS 220 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHh
Confidence 3445555566666555555543221 123566666666666654
No 92
>PRK12714 flgK flagellar hook-associated protein FlgK; Provisional
Probab=23.54 E-value=5.8e+02 Score=23.42 Aligned_cols=41 Identities=17% Similarity=0.220 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 032610 88 LKRIAELQSENDAVGQDLQRQ-LEAAEKELKQVQELFSQAAD 128 (137)
Q Consensus 88 ~~~i~~L~~E~~~~~~el~~~-v~e~e~ll~~v~~~l~~ia~ 128 (137)
+.+|-.|-+++..++++.... -...-.|+.+-+.+|+.+++
T Consensus 165 V~~IN~l~~~IA~LN~~I~~~~~~~~ndLlDqRD~ll~eLS~ 206 (624)
T PRK12714 165 VDEVNRLTQQIAKINGTIGSSAQNAAPDLLDQRDALVSKLVG 206 (624)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHh
Confidence 344555555555554444321 11234577777777777764
No 93
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=23.34 E-value=2.6e+02 Score=19.27 Aligned_cols=11 Identities=36% Similarity=0.456 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 032610 113 EKELKQVQELF 123 (137)
Q Consensus 113 e~ll~~v~~~l 123 (137)
+.|..+++.+|
T Consensus 50 D~l~~~L~~LL 60 (83)
T PF03670_consen 50 DHLHAQLQELL 60 (83)
T ss_pred hHHHHHHHHHH
Confidence 33333333333
No 94
>PF01997 Translin: Translin family; InterPro: IPR002848 Translins are DNA-binding proteins that specifically recognise consensus sequences at the breakpoint junctions in chromosomal translocations, mostly involving immunoglobulin (Ig)/T-cell receptor gene segments. They seem to recognise single-stranded DNA ends generated by staggered breaks occuring at recombination hot spots []. Translin folds into an alpha-alpha superhelix, consisting of two curved layers of alpha/alpha topology [, ].; GO: 0043565 sequence-specific DNA binding; PDB: 3QB5_K 3PJA_L 1J1J_D 3RIU_C 3AXJ_B 4DG7_C 2QVA_C 2QRX_A 1KEY_C.
Probab=23.32 E-value=3.3e+02 Score=20.95 Aligned_cols=27 Identities=11% Similarity=0.083 Sum_probs=21.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhCCC
Q 032610 53 AEQPKLMSAALVKAAKQFDALVAALPL 79 (137)
Q Consensus 53 ~~~~~ela~dii~kakqIe~LIdsLPg 79 (137)
++.+-..++||...+|.+-.++..-..
T Consensus 4 RE~iik~sRdi~~~Sk~~I~~lhr~~~ 30 (200)
T PF01997_consen 4 RERIIKLSRDITRLSKKIIFALHRIDQ 30 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCTCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 456777999999999999888555444
No 95
>PF08066 PMC2NT: PMC2NT (NUC016) domain; InterPro: IPR012588 Exosomes are nano-compartments that function in the degradation or processing of RNA (including mRNA, rRNA, snRNA and snoRNA) [, ]. Exosomes occur in both archaea and eukaryotes, and have a similar overall structure to each other and to bacterial/organelle PNPases (polynucleotide phosphorylases; 2.7.7.8 from EC) [], consisting of a barrel structure composed of a hexameric ring of PH domains that act as a degradation chamber, and an S1-domain/KH-domain containing cap that binds the RNA substrate (and sometimes accessory proteins) in order to regulate and restrict entry into the degradation chamber []. There are two types of exosomes in eukaryotes, cytoplasmic exosomes that are responsible for 3'-5' exoribonuclease degradation of mRNAs, and nuclear exosomes that degrade pre-mRNAs (such as nonsense transcripts) and degrade rRNAs, snRNAs and snoRNAs. Unstructured RNA substrates feed in through the pore made by the S1 domains, are degraded by the PH domain ring, and exit as nucleotides via the PH pore at the opposite end of the barrel [, ]. There are several accessory proteins that help degrade, unwind or polyadenylate RNA substrate before they enter the exosome. This entry represents the N-terminal domain of Rrp6 (exosome component 10 in humans), a nuclear exosome accessory factor that interacts with the bottom of the hexameric PH-ring opposite the cap. Rrp6 functions as a hydrolytic exonuclease, and is homologous to RNase-D in Escherichia coli. More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0006396 RNA processing, 0000176 nuclear exosome (RNase complex)
Probab=23.31 E-value=2.4e+02 Score=18.97 Aligned_cols=31 Identities=10% Similarity=0.207 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 97 ENDAVGQDLQRQLEAAEKELKQVQELFSQAA 127 (137)
Q Consensus 97 E~~~~~~el~~~v~e~e~ll~~v~~~l~~ia 127 (137)
.....+......+.--+.|+++++.+|..++
T Consensus 59 ~~~d~d~~~~~vvd~~D~LlEk~D~~LDe~~ 89 (91)
T PF08066_consen 59 DVDDVDERWDSVVDVNDSLLEKADISLDELT 89 (91)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhHHHHhHc
Confidence 3344556677777888899999998887654
No 96
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=23.23 E-value=3.7e+02 Score=24.04 Aligned_cols=68 Identities=18% Similarity=0.144 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCCCCHH-----HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 55 QPKLMSAALVKAAKQFDALVAALPLAEGGEE-----AQ--LKRIAELQSENDAVGQDLQRQLEAAEKELKQVQEL 122 (137)
Q Consensus 55 ~~~ela~dii~kakqIe~LIdsLPg~~~see-----~Q--~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~ 122 (137)
....+-+.++..+|+-..++..+--+.-..+ -| ...|.+|++|+....+++.......+.+...+..+
T Consensus 14 r~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~ 88 (459)
T KOG0288|consen 14 RLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDVLIA 88 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666655443321111 11 12788999999999999988777777777665543
No 97
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=23.18 E-value=2.9e+02 Score=21.92 Aligned_cols=41 Identities=17% Similarity=0.247 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHh
Q 032610 92 AELQSENDAVGQDLQRQLEAAEKELKQVQEL-------FSQAADNCLN 132 (137)
Q Consensus 92 ~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~-------l~~ia~~~l~ 132 (137)
..+++|++.++.++.+....+...+..|.+. |..+.+.|++
T Consensus 145 ~~~eeElr~Ae~kfees~E~a~~~M~~i~~~e~e~~~~L~~lv~AQl~ 192 (215)
T cd07593 145 SRLEEELRRAKAKYEESSEDVEARMVAIKESEADQYRDLTDLLDAELD 192 (215)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 3588888889998888888888888777764 5555666554
No 98
>PRK07521 flgK flagellar hook-associated protein FlgK; Validated
Probab=23.14 E-value=5.2e+02 Score=22.74 Aligned_cols=17 Identities=6% Similarity=-0.224 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhHhhhcc
Q 032610 11 INQIAGIAFNTFGTLQR 27 (137)
Q Consensus 11 ldqLa~~f~~sig~L~~ 27 (137)
|......||+++.-|..
T Consensus 100 l~~~l~~ff~a~~~la~ 116 (483)
T PRK07521 100 PSARLSDFQAALQTAAS 116 (483)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45567778888887754
No 99
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=22.90 E-value=2.3e+02 Score=18.66 Aligned_cols=29 Identities=7% Similarity=0.194 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 98 NDAVGQDLQRQLEAAEKELKQVQELFSQA 126 (137)
Q Consensus 98 ~~~~~~el~~~v~e~e~ll~~v~~~l~~i 126 (137)
+.....+-.+-..+...+-.+|+++|..+
T Consensus 41 ~~~L~~en~~L~~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 41 NEELKEENEQLKQERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333344444455555555666655544
No 100
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=22.83 E-value=3.3e+02 Score=20.35 Aligned_cols=62 Identities=10% Similarity=0.153 Sum_probs=39.8
Q ss_pred chHhhhhhHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 48 DAANFAEQPKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQV 119 (137)
Q Consensus 48 ~~~~f~~~~~ela~dii~kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v 119 (137)
+++.+.++.+.+..++-.|+..|-.+|..+ ...+..+.+|.+.........-+.++.|-..+
T Consensus 23 d~e~~~dtLe~i~~~~~~K~~~~~~~Ik~~----------ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL 84 (162)
T PF05565_consen 23 DEEAIADTLESIEDEIEEKADNIAKVIKNL----------EADIEAIKAEIKRLQERKKSIENRIDRLKEYL 84 (162)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788999999999999999999999887 22344455555444444433333333333333
No 101
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=22.78 E-value=2e+02 Score=22.01 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhC
Q 032610 54 EQPKLMSAALVKAAKQFDALVAAL 77 (137)
Q Consensus 54 ~~~~ela~dii~kakqIe~LIdsL 77 (137)
..+..+...|-.+.+.|+.|-|-+
T Consensus 130 ~~~~~l~~~l~ek~k~~e~l~DE~ 153 (194)
T PF08614_consen 130 EKIKDLEEELKEKNKANEILQDEL 153 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666666655533
No 102
>PF14772 NYD-SP28: Sperm tail
Probab=22.50 E-value=2.6e+02 Score=19.09 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 55 QPKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEA 111 (137)
Q Consensus 55 ~~~ela~dii~kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e 111 (137)
.+.+|..+|-.-.+.++.+|+.- ..-|..|..++..+..+|...++.
T Consensus 52 ~~~eL~~~ie~q~~~~e~ii~~K----------d~lI~~L~~eL~~~deqy~~~lr~ 98 (104)
T PF14772_consen 52 KPQELRKEIEEQKQACERIIDRK----------DALIKELQQELKEADEQYVKALRK 98 (104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777777777777777777642 346778888888888888777653
No 103
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=22.21 E-value=2.8e+02 Score=21.86 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 92 AELQSENDAVGQDLQRQLEAAEKE 115 (137)
Q Consensus 92 ~~L~~E~~~~~~el~~~v~e~e~l 115 (137)
++|-.|++++.+||.+++.|-..+
T Consensus 50 ~eLkNeLREVREELkEKmeEIKQI 73 (205)
T PF15079_consen 50 QELKNELREVREELKEKMEEIKQI 73 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888888888887777765444
No 104
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=22.17 E-value=1.6e+02 Score=21.89 Aligned_cols=42 Identities=17% Similarity=0.302 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Q 032610 54 EQPKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSEN 98 (137)
Q Consensus 54 ~~~~ela~dii~kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~ 98 (137)
....+.-..|.=..++|+++=+-||..- .+|.+++.++-++-
T Consensus 37 ~~L~sTl~~i~P~i~eI~~~~~eld~~~---~ee~e~L~~~L~~g 78 (147)
T PF05659_consen 37 KRLESTLESIIPIIKEIDKLNVELDRPR---QEEIERLKELLEKG 78 (147)
T ss_pred HHHHHHHHHhhhHHHHHHHHhhhcCCch---hHHHHHHHHHHHHH
Confidence 3344455566667777777776666542 44454444444333
No 105
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=22.03 E-value=3.1e+02 Score=19.75 Aligned_cols=57 Identities=12% Similarity=0.151 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 55 QPKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKEL 116 (137)
Q Consensus 55 ~~~ela~dii~kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll 116 (137)
.++.....+......|..+-..|.....+. ....+..+++....++...+.+-+++-
T Consensus 14 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~i~~~G 70 (120)
T PF09969_consen 14 LLRPILEEIRELKAELEELEERLQELEDSL-----EVNGLEAELEELEARLRELIDEIEELG 70 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchh-----hHHhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 366677777888888888877776654443 344455555555555555555544443
No 106
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=22.00 E-value=6.4e+02 Score=23.37 Aligned_cols=84 Identities=17% Similarity=0.152 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhCCCCC--------CCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 51 NFAEQPKLMSAALVKAAKQFDALVAALPLAE--------GGEEAQLK---RIAELQSENDAVGQDLQRQLEAAEKELKQV 119 (137)
Q Consensus 51 ~f~~~~~ela~dii~kakqIe~LIdsLPg~~--------~see~Q~~---~i~~L~~E~~~~~~el~~~v~e~e~ll~~v 119 (137)
.......+++.+|..+-+-..++=..|-..+ .+++++.+ .+..|++++...+-.+...+.++++++..+
T Consensus 443 tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~~~~~m~~a~~~v~s~ 522 (581)
T KOG0995|consen 443 TLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLVLNTSMKEAEELVKSI 522 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhcc
Q 032610 120 QELFSQAADNCLNLK 134 (137)
Q Consensus 120 ~~~l~~ia~~~l~~r 134 (137)
+-.+..++...-.-|
T Consensus 523 e~el~~~~~~~~eer 537 (581)
T KOG0995|consen 523 ELELDRMVATGEEER 537 (581)
T ss_pred HHHHHHHHHHHHHHH
No 107
>PRK08471 flgK flagellar hook-associated protein FlgK; Validated
Probab=21.93 E-value=6.3e+02 Score=23.21 Aligned_cols=99 Identities=11% Similarity=0.179 Sum_probs=49.9
Q ss_pred HHHHHHHHhHhhhcccCCCCCCCCCCCCCCCCCCcchHhhhhhHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 032610 13 QIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAANFAEQPKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIA 92 (137)
Q Consensus 13 qLa~~f~~sig~L~~~a~~~~~~~~~~~~~~~~~~~~~~f~~~~~ela~dii~kakqIe~LIdsLPg~~~see~Q~~~i~ 92 (137)
.....||+++.-|..+ |... .....+-...+.|+..+=..+.++..+-..+ +..-...+.+|-
T Consensus 112 ~~l~~ff~al~~ls~~--P~~~------------~~R~~vl~~a~~L~~~~n~~~~~L~~~~~~~---~~~i~~~V~~iN 174 (613)
T PRK08471 112 KDLQDYFNAWNDFASN--PKDS------------AQKQALAQKTETLTNNIKDTRERLDTLQKKV---NEELKVTVDEIN 174 (613)
T ss_pred HHHHHHHHHHHHHHhC--CCCH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 4556677777777443 1100 0112233344445554444444444443332 122233455666
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Q 032610 93 ELQSENDAVGQDLQRQLE-----AAEKELKQVQELFSQAAD 128 (137)
Q Consensus 93 ~L~~E~~~~~~el~~~v~-----e~e~ll~~v~~~l~~ia~ 128 (137)
.|-+++.+++++....-. .+-.|+.+-+.+|+.++.
T Consensus 175 ~ll~~Ia~LN~qI~~~~~~g~~~~~ndL~DqRD~ll~eLS~ 215 (613)
T PRK08471 175 SLGKQIAEINKQIKEVEAGKTLKHANELRDKRDELELTLSK 215 (613)
T ss_pred HHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHh
Confidence 666666666666554322 234577777777777664
No 108
>PRK11637 AmiB activator; Provisional
Probab=21.61 E-value=5.2e+02 Score=22.14 Aligned_cols=8 Identities=13% Similarity=0.331 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 032610 91 IAELQSEN 98 (137)
Q Consensus 91 i~~L~~E~ 98 (137)
|..++.++
T Consensus 98 i~~~~~ei 105 (428)
T PRK11637 98 LNQLNKQI 105 (428)
T ss_pred HHHHHHHH
Confidence 33333333
No 109
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=21.61 E-value=3.5e+02 Score=20.21 Aligned_cols=62 Identities=15% Similarity=0.164 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 59 MSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQEL 122 (137)
Q Consensus 59 la~dii~kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~ 122 (137)
.+......-++|..|-..+=++ |..|+.++=.+|++++..+++|+++.-++-..--..++..
T Consensus 38 ~~~~~~~l~~Ei~~l~~E~~~i--S~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~ 99 (161)
T PF04420_consen 38 SSKEQRQLRKEILQLKRELNAI--SAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKS 99 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS---TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555666666666555 6666777777777777777777666555444433333333
No 110
>PF08105 Antimicrobial10: Metchnikowin family; InterPro: IPR012513 This family consists of the metchnikowin family of antimicrobial peptides from Drosophila. metchnikowin is a proline-rich peptide whose expression is immune-inducible. Induction of the metchnikowin gene expression can be mediated either by the TOLL pathway or by the imd gene product. The metchnikowin peptide is unique among the Drosophila antimicrobial peptides in that it is active against both bacteria and fungi [].
Probab=21.38 E-value=78 Score=19.88 Aligned_cols=13 Identities=38% Similarity=0.805 Sum_probs=9.7
Q ss_pred CCCCCCCCCCCCC
Q 032610 30 PPVRLSPNYPEPP 42 (137)
Q Consensus 30 ~~~~~~~~~~~~~ 42 (137)
.||+|+||.|.+.
T Consensus 37 RPSPFNPN~Prpg 49 (52)
T PF08105_consen 37 RPSPFNPNQPRPG 49 (52)
T ss_pred CCCCCCCCCCCCC
Confidence 4888988877653
No 111
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=21.37 E-value=5.1e+02 Score=21.99 Aligned_cols=34 Identities=21% Similarity=0.401 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 032610 62 ALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVG 102 (137)
Q Consensus 62 dii~kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~ 102 (137)
.|-.....++.+..+||.+ +.||+.|..=+.+|.
T Consensus 299 eLy~~l~~~~~~~~~lP~l-------v~RL~tL~~lH~~a~ 332 (388)
T PF04912_consen 299 ELYEILPRWDPYAPSLPSL-------VERLKTLKSLHEEAA 332 (388)
T ss_pred HHHHHHHHHHHHhhhhhHH-------HHHHHHHHHHHHHHH
Confidence 3444556666777777776 667766665554443
No 112
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=21.25 E-value=4.8e+02 Score=22.12 Aligned_cols=64 Identities=19% Similarity=0.150 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 59 MSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQEL 122 (137)
Q Consensus 59 la~dii~kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~ 122 (137)
-+..+.....+|..|=+-|-.-...-..|-+.|..|..+........+.-.-+.|++...+...
T Consensus 204 cv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~s 267 (306)
T PF04849_consen 204 CVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQAS 267 (306)
T ss_pred HHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3445555566666666666555445556667777787777777777777777777777666554
No 113
>PRK10884 SH3 domain-containing protein; Provisional
Probab=21.00 E-value=4.2e+02 Score=20.88 Aligned_cols=36 Identities=17% Similarity=0.154 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 90 RIAELQSENDAVGQDLQRQLEAAEKELKQVQELFSQ 125 (137)
Q Consensus 90 ~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~ 125 (137)
.+.+|.++|.++.+++...-.+.+.+-.+++..=+.
T Consensus 133 ~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 133 VINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455588888888888888888777776666655443
No 114
>PF01540 Lipoprotein_7: Adhesin lipoprotein; InterPro: IPR002520 This family consists of the p50 and variable adherence-associated antigen (Vaa) adhesins from Mycoplasma hominis. M. hominis is a mycoplasma associated with human urogenital diseases, pneumonia, and septic arthritis []. An adhesin is a cell surface molecule that mediates adhesion to other cells or to the surrounding surface or substrate. The Vaa antigen is a 50kDa surface lipoprotein that has four tandem repetitive DNA sequences encoding a periodic peptide structure, and is highly immunogenic in the human host []. p50 is also a 50kDa lipoprotein, having three repeats A,B and C, that may be a tetramer of 191kDa in its native environment [].
Probab=20.99 E-value=5.2e+02 Score=21.96 Aligned_cols=28 Identities=18% Similarity=0.362 Sum_probs=24.3
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 032610 49 AANFAEQPKLMSAALVKAAKQFDALVAA 76 (137)
Q Consensus 49 ~~~f~~~~~ela~dii~kakqIe~LIds 76 (137)
+..|.+...-|++++-.++.+|+..+..
T Consensus 162 ~~~FKekLesfa~~L~~KS~eI~tFttv 189 (353)
T PF01540_consen 162 DKDFKEKLESFADLLNKKSREIDTFTTV 189 (353)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3579999999999999999999987654
No 115
>PF05965 FYRC: F/Y rich C-terminus; InterPro: IPR003889 The "FY-rich" domain C-terminal region is sometimes closely juxtaposed with the N-terminal region (IPR003888 from INTERPRO), but sometimes is far distant. It is of unknown function, but occurs frequently in chromatin-associated proteins like trithorax and its homologues.; GO: 0005634 nucleus; PDB: 2WZO_A.
Probab=20.85 E-value=47 Score=22.06 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=12.6
Q ss_pred HHHHHHHHHhCCCCCC
Q 032610 67 AKQFDALVAALPLAEG 82 (137)
Q Consensus 67 akqIe~LIdsLPg~~~ 82 (137)
.-.|-.||.+|||.+.
T Consensus 61 ~p~V~~lie~Lp~a~~ 76 (86)
T PF05965_consen 61 NPAVQRLIESLPGADK 76 (86)
T ss_dssp SHHHHHHHTTSTTGGG
T ss_pred CHHHHHHHHhCCCcch
Confidence 3467899999999763
No 116
>PRK11546 zraP zinc resistance protein; Provisional
Probab=20.64 E-value=3.8e+02 Score=20.19 Aligned_cols=60 Identities=20% Similarity=0.297 Sum_probs=36.0
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 50 ANFAEQPKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKEL 116 (137)
Q Consensus 50 ~~f~~~~~ela~dii~kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll 116 (137)
+.|......|=..|..|--.+..|..+=+.- -++|+.|..|+..+..++.+...+-+..+
T Consensus 57 ~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD-------~~kI~aL~kEI~~Lr~kL~e~r~~~~~~~ 116 (143)
T PRK11546 57 NDFYAQTSALRQQLVSKRYEYNALLTANPPD-------SSKINAVAKEMENLRQSLDELRVKRDIAM 116 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666667777777888888887664433 23566666666666655554444333333
No 117
>PF09795 Atg31: Autophagy-related protein 31; InterPro: IPR018621 Autophagy is an intracellular degradation system that responds to nutrient starvation. Cis1/Atg31 has been shown to be required for autophagosome formation in Saccharomyces cerevisiae (Baker's yeast) []. It interacts with Atg17 [].
Probab=20.41 E-value=1.5e+02 Score=22.90 Aligned_cols=22 Identities=14% Similarity=0.046 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC
Q 032610 56 PKLMSAALVKAAKQFDALVAAL 77 (137)
Q Consensus 56 ~~ela~dii~kakqIe~LIdsL 77 (137)
..+|.+.-...-+||.+|+++|
T Consensus 139 Ld~Li~lY~~QNeQlq~l~dsl 160 (160)
T PF09795_consen 139 LDDLIKLYRIQNEQLQMLSDSL 160 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 7789999999999999999986
No 118
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.37 E-value=8.7e+02 Score=24.28 Aligned_cols=76 Identities=14% Similarity=0.160 Sum_probs=38.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 51 NFAEQPKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQELFSQA 126 (137)
Q Consensus 51 ~f~~~~~ela~dii~kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~i 126 (137)
.++..+.+|...+......|..+=..+.++...-+.=..+..++..++.....+.+..+......+..+..+...|
T Consensus 885 ~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 960 (1311)
T TIGR00606 885 QFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDI 960 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777666666553222222223334444444444444444444444444444443333
No 119
>PF05372 Delta_lysin: Delta lysin family; InterPro: IPR008034 Delta-lysin is a 26 amino acid, hemolytic peptide toxin secreted by Staphylococcus aureus. It is thought that delta-toxin forms an amphipathic helix upon binding to lipid bilayers []. The precise mode of action of delta-lysis is unclear.; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0005576 extracellular region; PDB: 2KAM_A 2DTB_A 1DTC_A.
Probab=20.10 E-value=1.6e+02 Score=15.75 Aligned_cols=13 Identities=8% Similarity=0.061 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 032610 56 PKLMSAALVKAAK 68 (137)
Q Consensus 56 ~~ela~dii~kak 68 (137)
+-+|...|+.+.+
T Consensus 9 IgdfvKlI~~TV~ 21 (25)
T PF05372_consen 9 IGDFVKLIIETVK 21 (25)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4445555554444
Done!