Query 032610
Match_columns 137
No_of_seqs 113 out of 163
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 05:19:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032610.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032610hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yke_B RNA polymerase II holoe 100.0 1.3E-49 4.5E-54 299.5 11.9 136 1-136 2-139 (151)
2 1ykh_B RNA polymerase II holoe 100.0 3.8E-48 1.3E-52 285.9 14.6 129 1-129 2-132 (132)
3 1zxa_A CGMP-dependent protein 83.3 2.9 9.8E-05 26.8 5.3 46 78-123 3-48 (67)
4 2olt_A Hypothetical protein; s 76.1 21 0.00073 26.4 13.8 111 4-130 86-213 (227)
5 3uun_A Dystrophin; triple heli 65.5 24 0.00083 22.7 10.2 67 50-117 5-71 (119)
6 3uul_A Utrophin; spectrin repe 64.7 25 0.00087 22.6 8.5 107 4-125 4-114 (118)
7 3mq7_A Bone marrow stromal ant 64.1 20 0.00068 25.4 5.9 41 88-128 70-110 (121)
8 3uul_A Utrophin; spectrin repe 59.4 32 0.0011 22.1 8.9 64 50-117 5-71 (118)
9 3edv_A Spectrin beta chain, br 57.8 60 0.0021 24.7 8.8 61 69-129 237-306 (323)
10 3a2a_A Voltage-gated hydrogen 56.5 32 0.0011 21.2 6.1 45 81-125 6-50 (58)
11 3l39_A Putative PHOU-like phos 56.5 60 0.0021 24.3 15.2 91 4-113 96-189 (227)
12 3lay_A Zinc resistance-associa 53.9 64 0.0022 23.8 7.9 58 51-109 82-140 (175)
13 3g67_A Methyl-accepting chemot 53.5 66 0.0023 24.3 7.9 29 50-78 115-143 (213)
14 3ni0_A Bone marrow stromal ant 50.7 14 0.00047 25.3 3.1 48 65-112 43-90 (99)
15 1nlw_A MAD protein, MAX dimeri 48.7 51 0.0017 21.1 6.0 52 69-120 19-78 (80)
16 3cvf_A Homer-3, homer protein 46.2 59 0.002 21.2 6.9 39 90-128 28-66 (79)
17 3i00_A HIP-I, huntingtin-inter 46.1 69 0.0024 22.3 6.4 65 54-122 15-80 (120)
18 3cve_A Homer protein homolog 1 39.9 73 0.0025 20.4 6.9 39 90-128 22-60 (72)
19 3fb2_A Spectrin alpha chain, b 39.7 1E+02 0.0035 22.1 7.8 63 51-117 17-81 (218)
20 3b5n_A Synaptobrevin homolog 1 39.1 30 0.001 20.9 3.2 24 2-25 2-25 (61)
21 3vmx_A Voltage-gated hydrogen 36.7 67 0.0023 19.1 7.4 42 84-125 2-43 (48)
22 1n7s_A Vesicle-associated memb 33.7 41 0.0014 20.3 3.2 24 2-25 4-27 (63)
23 3hnw_A Uncharacterized protein 31.9 1.3E+02 0.0046 21.1 7.6 63 59-128 66-128 (138)
24 1gl2_A Endobrevin; membrane pr 31.7 44 0.0015 20.5 3.1 24 2-25 9-32 (65)
25 2ke4_A CDC42-interacting prote 31.5 94 0.0032 20.8 5.0 32 89-120 15-46 (98)
26 2lw9_A Unconventionnal myosin- 30.4 82 0.0028 18.8 4.0 23 86-108 3-25 (51)
27 4egx_A Kinesin-like protein KI 30.3 1.6E+02 0.0055 21.5 7.2 39 88-126 11-49 (184)
28 1l4a_A Synaptobrevin; snare, s 29.2 55 0.0019 20.8 3.4 24 2-25 15-38 (80)
29 3rrk_A V-type ATPase 116 kDa s 28.6 2E+02 0.0067 22.5 7.2 43 69-111 200-255 (357)
30 1hjb_A Ccaat/enhancer binding 28.1 1.2E+02 0.004 19.9 4.9 36 90-129 44-79 (87)
31 2aze_B Transcription factor E2 27.8 1.4E+02 0.0048 20.1 5.6 38 90-131 7-44 (106)
32 2xdj_A Uncharacterized protein 27.8 1.3E+02 0.0044 19.5 5.1 44 90-133 35-78 (83)
33 3kbt_A Beta-I spectrin, spectr 27.1 1.2E+02 0.0043 22.8 5.7 35 83-117 250-284 (326)
34 2oa5_A Hypothetical protein BQ 26.6 1.6E+02 0.0055 20.3 6.2 54 81-134 7-71 (110)
35 3m91_A Proteasome-associated A 26.3 1.1E+02 0.0037 18.2 6.5 32 91-126 18-49 (51)
36 3a7p_A Autophagy protein 16; c 25.6 96 0.0033 22.6 4.4 21 56-76 84-104 (152)
37 4afl_A P29ING4, inhibitor of g 25.4 1.5E+02 0.005 19.4 11.9 58 67-126 42-99 (104)
38 3vkg_A Dynein heavy chain, cyt 25.2 2.6E+02 0.0088 29.7 8.8 75 48-123 1893-1968(3245)
39 2nps_A VAMP-4, vesicle-associa 24.9 36 0.0012 21.4 1.8 24 2-25 8-31 (74)
40 4etp_A Kinesin-like protein KA 24.7 2.5E+02 0.0085 23.0 7.4 34 89-122 24-57 (403)
41 2p22_C Protein SRN2; endosome, 24.3 2.2E+02 0.0076 21.1 11.2 60 68-128 52-111 (192)
42 2w6b_A RHO guanine nucleotide 24.1 1.3E+02 0.0044 18.4 5.4 35 90-124 18-52 (56)
43 3hd7_A Vesicle-associated memb 23.7 71 0.0024 20.8 3.2 24 2-25 5-28 (91)
44 2efr_A General control protein 23.4 1.3E+02 0.0045 21.8 4.9 37 90-126 99-135 (155)
45 2y39_A Nickel and cobalt resis 23.2 85 0.0029 21.9 3.6 34 90-123 39-72 (118)
46 1gd2_E Transcription factor PA 23.0 1.5E+02 0.0051 18.6 5.5 33 90-122 30-62 (70)
47 1sfc_D Protein (SNAP-25B), pro 22.5 1.1E+02 0.0037 19.7 3.9 33 85-117 53-85 (87)
48 1sfc_A VAMP 2, protein (synapt 22.2 79 0.0027 20.9 3.2 24 2-25 30-53 (96)
49 2nps_D Syntaxin-6; vesicle fus 22.0 1.6E+02 0.0054 18.6 5.8 35 84-118 42-76 (82)
50 3mq9_A Bone marrow stromal ant 21.8 1.3E+02 0.0046 24.3 5.2 22 88-109 442-463 (471)
51 1fxk_C Protein (prefoldin); ar 21.2 2E+02 0.0067 19.4 5.9 33 90-122 96-128 (133)
52 1gl2_D Syntaxin 8, vesicle tra 21.1 1.4E+02 0.0049 17.8 4.2 31 85-115 33-63 (65)
53 2dfs_A Myosin-5A; myosin-V, in 20.3 2.4E+02 0.0082 26.3 7.0 38 89-126 984-1021(1080)
54 2yko_A LINE-1 ORF1P; RNA-bindi 20.1 3.1E+02 0.011 21.2 7.5 46 80-129 4-49 (233)
No 1
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=100.00 E-value=1.3e-49 Score=299.54 Aligned_cols=136 Identities=24% Similarity=0.315 Sum_probs=117.6
Q ss_pred CchhhHHHHHHHHHHHHHHHhHhhhcccCCCCCCCCCCCCCCCC--CCcchHhhhhhHHHHHHHHHHHHHHHHHHHHhCC
Q 032610 1 MDIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPAN--PTEDAANFAEQPKLMSAALVKAAKQFDALVAALP 78 (137)
Q Consensus 1 mDrLTQLQd~ldqLa~~f~~sig~L~~~a~~~~~~~~~~~~~~~--~~~~~~~f~~~~~ela~dii~kakqIe~LIdsLP 78 (137)
||||||||||||+|+++||||||||+++|||++|+|+.|.++.. .+.+++.|..++.+||+|||.|+|||++||||||
T Consensus 2 aDrLTQLQd~ldqLa~~f~nsig~Lq~~app~~~~~~~~~~~~~~~~~~~~~~f~~~~~ela~dli~kakqIe~LIdsLP 81 (151)
T 1yke_B 2 TDRLTQLQICLDQMTEQFCATLNYIDKNHGFERLTVNEPQMSDKHATVVPPEEFSNTIDELSTDIILKTRQINKLIDSLP 81 (151)
T ss_dssp -CCHHHHHHHHHHHHHHTTTTHHHHHHTTGGGGCCC------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 89999999999999999999999999999999999887653322 2357899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 032610 79 LAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQELFSQAADNCLNLKKP 136 (137)
Q Consensus 79 g~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~ia~~~l~~r~~ 136 (137)
|+++|+++|+++|++|++||++++++|+++|++||.++++|+++|+.|+++++++|++
T Consensus 82 g~~~seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l~~ia~~~l~~r~~ 139 (151)
T 1yke_B 82 GVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIEDFVDGIANSKKS 139 (151)
T ss_dssp TSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC------
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 9999999999999999999999999999999999999999999999999999999986
No 2
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=100.00 E-value=3.8e-48 Score=285.87 Aligned_cols=129 Identities=21% Similarity=0.309 Sum_probs=111.7
Q ss_pred CchhhHHHHHHHHHHHHHHHhHhhhcccCCCCCCCCCCCCCCCC--CCcchHhhhhhHHHHHHHHHHHHHHHHHHHHhCC
Q 032610 1 MDIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPAN--PTEDAANFAEQPKLMSAALVKAAKQFDALVAALP 78 (137)
Q Consensus 1 mDrLTQLQd~ldqLa~~f~~sig~L~~~a~~~~~~~~~~~~~~~--~~~~~~~f~~~~~ela~dii~kakqIe~LIdsLP 78 (137)
||||||||||||+|+++||||||||+++|||++|+|+.|.++.. .+.+++.|..++.+||+|||.|+|||++||||||
T Consensus 2 aDrlTQLQd~ldqla~~f~nsig~Lq~~a~p~~~~~~~~~~~~~~~~~~~~~~f~~~~~ela~dli~k~kqIe~LIdsLP 81 (132)
T 1ykh_B 2 TDRMTQLQICLDQMTEQFCATLNYIDKNHGFERLTVNEPQMSDKHATVVPPEEFSNTIDELSTDIILKTRQINKLIDSLP 81 (132)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 89999999999999999999999999999999999877654322 2357799999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 79 LAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQELFSQAADN 129 (137)
Q Consensus 79 g~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~ia~~ 129 (137)
|+++|+++|+++|++|++||++++++|+++|++|+.++++|+++|+.|++|
T Consensus 82 ~~~~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~i~~~ 132 (132)
T 1ykh_B 82 GVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMIEDFVDG 132 (132)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999875
No 3
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=83.28 E-value=2.9 Score=26.83 Aligned_cols=46 Identities=15% Similarity=0.291 Sum_probs=12.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 78 PLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQELF 123 (137)
Q Consensus 78 Pg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l 123 (137)
||+..|-..+.+.+.+.-..-.+.-.+++..+.+++.....+++.|
T Consensus 3 ~~~~~~~~~~~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~L 48 (67)
T 1zxa_A 3 PGIPGSTSELEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKL 48 (67)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555444443333333333333344444444444444444433
No 4
>2olt_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Shewanella oneidensis} PDB: 2iiu_A*
Probab=76.10 E-value=21 Score=26.41 Aligned_cols=111 Identities=19% Similarity=0.155 Sum_probs=76.7
Q ss_pred hhHHHHHHHHHHHHHHHhHhhhcccCCCCCCCCCCCCCCCCCCcchHhhhhhHHHHHHHHHHHHHHHHHHHHhCC-----
Q 032610 4 ISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAANFAEQPKLMSAALVKAAKQFDALVAALP----- 78 (137)
Q Consensus 4 LTQLQd~ldqLa~~f~~sig~L~~~a~~~~~~~~~~~~~~~~~~~~~~f~~~~~ela~dii~kakqIe~LIdsLP----- 78 (137)
+..|=..+|..++.+-++.+++.-.. + .+ +........+|+..++..++.+...+..|+
T Consensus 86 i~~L~~~lD~I~D~~~~~a~~~~~~~-~-~~--------------~~~~~~~~~~~~~~~~~~~~~~~~ai~~l~~l~e~ 149 (227)
T 2olt_A 86 LLELLTQQDKIANKAKDISGRVIGRQ-L-LI--------------PQALQVPFIAYLQRCIDAVGLAQQVINELDDLLEA 149 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT-C-CC--------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-C-CC--------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455667777777777777775541 1 11 122456688999999999999999999887
Q ss_pred CCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
Q 032610 79 LAEGGE----EAQLKRIAELQSENDAVGQDLQRQLEAAEK--------ELKQVQELFSQAADNC 130 (137)
Q Consensus 79 g~~~se----e~Q~~~i~~L~~E~~~~~~el~~~v~e~e~--------ll~~v~~~l~~ia~~~ 130 (137)
|...+. .+-..++.+++.+-.....++...+.+.+. .+..+=..|..+++++
T Consensus 150 ~~~~~~~~~~~~~~~~i~~lE~~~D~l~~~~~~~Lf~~~~~~d~~~~i~~~ei~~~lE~i~D~~ 213 (227)
T 2olt_A 150 GFRGREVDFVAKMINELDIIEEDTDDLQIQLRRQLFALESELNPVDVMFLYKTIEWVGGLADLA 213 (227)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 554333 344669999999999999999998887654 4455555566666554
No 5
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=65.54 E-value=24 Score=22.68 Aligned_cols=67 Identities=10% Similarity=0.040 Sum_probs=47.1
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 50 ANFAEQPKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELK 117 (137)
Q Consensus 50 ~~f~~~~~ela~dii~kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~ 117 (137)
..|...+++|-.=|-.+.+.+... +.+|+--.+-+.|+++.+.|+.++..-...+......|+.|+.
T Consensus 5 ~~F~~~l~el~~WL~~~e~~l~~~-~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~ 71 (119)
T 3uun_A 5 DRYQTALEEVLSWLLSAEDTLQAQ-GEISNDVEVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIG 71 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-CSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC-CCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 457788888888887665555432 1122222334577888899999999888888888888888865
No 6
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=64.71 E-value=25 Score=22.65 Aligned_cols=107 Identities=10% Similarity=0.091 Sum_probs=60.0
Q ss_pred hhHHHHHHHHHHHHHHHhHhhhcccCCCCCCCCCCCCCCCCCCcchHhhhhhHHHHHHHHHHHHHHHHHHHHhCCC----
Q 032610 4 ISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAANFAEQPKLMSAALVKAAKQFDALVAALPL---- 79 (137)
Q Consensus 4 LTQLQd~ldqLa~~f~~sig~L~~~a~~~~~~~~~~~~~~~~~~~~~~f~~~~~ela~dii~kakqIe~LIdsLPg---- 79 (137)
|.+.|++++.|..-+..+=..|....|+ + + ..+.....-...+.|-.+|......|+.+...=..
T Consensus 4 L~~f~~~l~el~~WL~e~e~~l~~~~~~---~-~-------d~~~v~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~~ 72 (118)
T 3uul_A 4 LDSYQIALEEVLTWLLSAEDTFQEQDDI---S-D-------DVEDVKEQFATHETFMMELSAHQSSVGSVLQAGNQLMTQ 72 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCC---C-S-------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCC---C-C-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567888888888877776666543221 1 1 01122223344667777887777777765543111
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 80 AEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQELFSQ 125 (137)
Q Consensus 80 ~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~ 125 (137)
-..++++ ...++..+..+...+......+.....+++.++..
T Consensus 73 ~~~~~~~----~~~i~~~l~~l~~rw~~L~~~~~~R~~~L~~aL~~ 114 (118)
T 3uul_A 73 GTLSDEE----EFEIQEQMTLLNARWEALRVESMERQSRLHDALME 114 (118)
T ss_dssp TCSCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122222 22355566666666666666666666666666543
No 7
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=64.15 E-value=20 Score=25.36 Aligned_cols=41 Identities=27% Similarity=0.318 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 88 LKRIAELQSENDAVGQDLQRQLEAAEKELKQVQELFSQAAD 128 (137)
Q Consensus 88 ~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~ia~ 128 (137)
.+++++|+.|++..+++|+.+-.+.|.|.+..+.+=..|+.
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~ 110 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIAD 110 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhh
Confidence 44789999999999999999988888888887765555443
No 8
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=59.38 E-value=32 Score=22.11 Aligned_cols=64 Identities=11% Similarity=0.051 Sum_probs=48.9
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 50 ANFAEQPKLMSAALVKAAKQFDALVAALPLAEGG---EEAQLKRIAELQSENDAVGQDLQRQLEAAEKELK 117 (137)
Q Consensus 50 ~~f~~~~~ela~dii~kakqIe~LIdsLPg~~~s---ee~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~ 117 (137)
..|...+++|-.=|-.+.+. +.+.+.++.+ -+.|+++.+.|+.++..-...+......|+.|+.
T Consensus 5 ~~f~~~l~el~~WL~e~e~~----l~~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~ 71 (118)
T 3uul_A 5 DSYQIALEEVLTWLLSAEDT----FQEQDDISDDVEDVKEQFATHETFMMELSAHQSSVGSVLQAGNQLMT 71 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888888766544 3454444444 3567889999999999999999999999999975
No 9
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=57.81 E-value=60 Score=24.68 Aligned_cols=61 Identities=16% Similarity=0.197 Sum_probs=42.5
Q ss_pred HHHHHHHh--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Q 032610 69 QFDALVAA--LPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELK-------QVQELFSQAADN 129 (137)
Q Consensus 69 qIe~LIds--LPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~-------~v~~~l~~ia~~ 129 (137)
..+..+.+ +|+--.+.+.++++.+.|..|+..-...+......|+.|+. .|...+..+.+.
T Consensus 237 ~~~~~l~~~~~~~d~~~~e~ll~~h~~l~~ei~~~~~~~~~l~~~g~~Ll~~~~~~~~~i~~~l~~L~~~ 306 (323)
T 3edv_A 237 DVIRQIEAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLARKHYASEEIKEKLLQLTEK 306 (323)
T ss_dssp HHHHHHHTCCCCCSHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHH
Confidence 33444444 23322346677889999999999999999999999998876 355556555443
No 10
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=56.55 E-value=32 Score=21.17 Aligned_cols=45 Identities=24% Similarity=0.322 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 81 EGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQELFSQ 125 (137)
Q Consensus 81 ~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~ 125 (137)
..-.+.|+.++++.+..+...-+.|+..-.++|....++..+|+.
T Consensus 6 ktRse~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkq 50 (58)
T 3a2a_A 6 KTRSERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQ 50 (58)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678899999999999888899999989999988888888764
No 11
>3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron}
Probab=56.47 E-value=60 Score=24.28 Aligned_cols=91 Identities=13% Similarity=0.137 Sum_probs=64.4
Q ss_pred hhHHHHHHHHHHHHHHHhHhhhcccCCCCCCCCCCCCCCCCCCcchHhhhhhHHHHHHHHHHHHHHHHHHHHhCCCCC-C
Q 032610 4 ISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAANFAEQPKLMSAALVKAAKQFDALVAALPLAE-G 82 (137)
Q Consensus 4 LTQLQd~ldqLa~~f~~sig~L~~~a~~~~~~~~~~~~~~~~~~~~~~f~~~~~ela~dii~kakqIe~LIdsLPg~~-~ 82 (137)
+-.|=..+|..++.+-.+.+.+.-..+. .+ .....+|+..++.+++.+...|..|+.+. .
T Consensus 96 I~~L~~~lDdI~D~ie~~a~~l~l~~~~-~~------------------~~~~~~l~~~i~~~~~~l~~ai~~L~~~~~~ 156 (227)
T 3l39_A 96 IHDLASCMDDVIDGINSSAKRIVIYNPR-PI------------------SESGKELSRLIHEEAINIGKAMDELETFRKN 156 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCS-SC------------------CHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCC-CC------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3455566677777777777766543221 11 13478899999999999999999999985 3
Q ss_pred CH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 83 GE--EAQLKRIAELQSENDAVGQDLQRQLEAAE 113 (137)
Q Consensus 83 se--e~Q~~~i~~L~~E~~~~~~el~~~v~e~e 113 (137)
+. .+-..+|.+++.+-..+-.+....+-..+
T Consensus 157 ~~~i~~~~~eI~~lE~eaD~l~~~~~~~Lf~~e 189 (227)
T 3l39_A 157 PKPLRDYCTQLHDIENQADDVYELFITKLFEEE 189 (227)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 33 33356899999988888877777776655
No 12
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=53.87 E-value=64 Score=23.83 Aligned_cols=58 Identities=16% Similarity=0.254 Sum_probs=34.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 51 NFAEQPKLMSAALVKAAKQFDALVAALPLAEGGE-EAQLKRIAELQSENDAVGQDLQRQL 109 (137)
Q Consensus 51 ~f~~~~~ela~dii~kakqIe~LIdsLPg~~~se-e~Q~~~i~~L~~E~~~~~~el~~~v 109 (137)
.|......+-..+..+-.++..|+.+ |.+|... +...++|.+|..++.....+....+
T Consensus 82 e~r~~~~~Lr~ql~akr~EL~aL~~a-~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~~em 140 (175)
T 3lay_A 82 DYYTQTSALRQQLISKRYEYNALLTA-SSPDTAKINAVAKEMESLGQKLDEQRVKRDVAM 140 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTS-SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667778888888999999987 5554322 2223355555555544444444443
No 13
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=53.48 E-value=66 Score=24.31 Aligned_cols=29 Identities=14% Similarity=0.040 Sum_probs=23.8
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHhCC
Q 032610 50 ANFAEQPKLMSAALVKAAKQFDALVAALP 78 (137)
Q Consensus 50 ~~f~~~~~ela~dii~kakqIe~LIdsLP 78 (137)
.+..+.++.||..-...+++|..+|..+-
T Consensus 115 aVVA~Evr~La~~t~~~~~~I~~~i~~i~ 143 (213)
T 3g67_A 115 MIVANEVQNLSNETNEVTKQIVEKAREIL 143 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567799999999999999998888763
No 14
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=50.70 E-value=14 Score=25.29 Aligned_cols=48 Identities=21% Similarity=0.155 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 65 KAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAA 112 (137)
Q Consensus 65 ~kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~ 112 (137)
.+-+-...|-+||--...-...|.+++++|+.|.+..++.|+++.-.+
T Consensus 43 TCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~~~~ 90 (99)
T 3ni0_A 43 SCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELENLRIQK 90 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556778888866544455667899999999999999888876443
No 15
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=48.66 E-value=51 Score=21.15 Aligned_cols=52 Identities=12% Similarity=0.217 Sum_probs=35.8
Q ss_pred HHHHHHHhCCCCCCCH----HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 69 QFDALVAALPLAEGGE----EA----QLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQ 120 (137)
Q Consensus 69 qIe~LIdsLPg~~~se----e~----Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~ 120 (137)
-|+.|=+.+|....++ -. =.+-|..|+.+......+...--++-+.|..++.
T Consensus 19 ~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 19 SLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3667888889764322 11 1447888999888888887777777777766654
No 16
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=46.21 E-value=59 Score=21.18 Aligned_cols=39 Identities=3% Similarity=0.124 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 90 RIAELQSENDAVGQDLQRQLEAAEKELKQVQELFSQAAD 128 (137)
Q Consensus 90 ~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~ia~ 128 (137)
++..|+..++....+....-.+...++..++..|..+.+
T Consensus 28 ~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~e 66 (79)
T 3cvf_A 28 QLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSE 66 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 666677777666666666667777777777777776654
No 17
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=46.05 E-value=69 Score=22.30 Aligned_cols=65 Identities=15% Similarity=0.134 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 54 EQPKLMSAALVKAAKQFDALVAALPLAEGGEEAQLK-RIAELQSENDAVGQDLQRQLEAAEKELKQVQEL 122 (137)
Q Consensus 54 ~~~~ela~dii~kakqIe~LIdsLPg~~~see~Q~~-~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~ 122 (137)
..+..|-+.|-.--..++.|.-. ....=.|++ +|..|+.|+.+.....+.++.+.+.|...+..+
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E----~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTE----SQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777777777766310 011112233 888999999999999999999999988888765
No 18
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=39.87 E-value=73 Score=20.40 Aligned_cols=39 Identities=5% Similarity=0.092 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 90 RIAELQSENDAVGQDLQRQLEAAEKELKQVQELFSQAAD 128 (137)
Q Consensus 90 ~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~ia~ 128 (137)
++..|+..++....+....-.+...++..++..|..+.+
T Consensus 22 ~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~e 60 (72)
T 3cve_A 22 QLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTE 60 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 566666666666666666667777777777777776654
No 19
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Probab=39.72 E-value=1e+02 Score=22.13 Aligned_cols=63 Identities=24% Similarity=0.201 Sum_probs=37.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHh--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 51 NFAEQPKLMSAALVKAAKQFDALVAA--LPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELK 117 (137)
Q Consensus 51 ~f~~~~~ela~dii~kakqIe~LIds--LPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~ 117 (137)
.|...+.+|..-+-.+.+ .+++ +|+=-.+.+.++++-..+..++..-...+..+...|+.|+.
T Consensus 17 ~F~~~~~~l~~Wl~~~~~----~l~~~e~~~d~~~ve~ll~~H~~l~~ei~~~~~~~~~~~~~G~~Ll~ 81 (218)
T 3fb2_A 17 RFLSDFRDLMSWINGIRG----LVSSDELAKDVTGAEALLERHQEHRTEIDARAGTFQAFEQFGQQLLA 81 (218)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHTCCCCCSSSHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHcCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 455555555544444443 3443 33322334556777777888877766777777777777664
No 20
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=39.11 E-value=30 Score=20.92 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=22.1
Q ss_pred chhhHHHHHHHHHHHHHHHhHhhh
Q 032610 2 DIISQLQEQINQIAGIAFNTFGTL 25 (137)
Q Consensus 2 DrLTQLQd~ldqLa~~f~~sig~L 25 (137)
|+|+++|..|+..-.+|...|.-+
T Consensus 2 d~l~~vq~~l~evk~iM~~NI~~v 25 (61)
T 3b5n_A 2 SRTAELQAEIDDTVGIMRDNINKV 25 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999998766
No 21
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=36.74 E-value=67 Score=19.09 Aligned_cols=42 Identities=21% Similarity=0.324 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 84 EEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQELFSQ 125 (137)
Q Consensus 84 ee~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~ 125 (137)
.+.|+.++++....+..--.+++..-.+.|.....++.+|+.
T Consensus 2 aeq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 2 SERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 567888888888888887888888878888777777777653
No 22
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=33.65 E-value=41 Score=20.34 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=21.9
Q ss_pred chhhHHHHHHHHHHHHHHHhHhhh
Q 032610 2 DIISQLQEQINQIAGIAFNTFGTL 25 (137)
Q Consensus 2 DrLTQLQd~ldqLa~~f~~sig~L 25 (137)
|+|+++|..|+..-.+|...|.-+
T Consensus 4 d~l~~v~~~l~ev~~iM~~NI~~v 27 (63)
T 1n7s_A 4 RRLQQTQAQVDEVVDIMRVNVDKV 27 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999998766
No 23
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=31.86 E-value=1.3e+02 Score=21.12 Aligned_cols=63 Identities=16% Similarity=0.132 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 59 MSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQELFSQAAD 128 (137)
Q Consensus 59 la~dii~kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~ia~ 128 (137)
+|.++...-++++.|-..+-. -.+.+..|-.++..+..++..+-++.+++.++++.+-..+..
T Consensus 66 iadEl~k~~~~~~~L~~~l~~-------~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~ 128 (138)
T 3hnw_A 66 IADDYFKAKKMADSLSLDIEN-------KDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVK 128 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555565555433221 134566666777777777777777777777777766666543
No 24
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=31.68 E-value=44 Score=20.45 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=21.1
Q ss_pred chhhHHHHHHHHHHHHHHHhHhhh
Q 032610 2 DIISQLQEQINQIAGIAFNTFGTL 25 (137)
Q Consensus 2 DrLTQLQd~ldqLa~~f~~sig~L 25 (137)
|+|+++|..|+..-.+|...|.-+
T Consensus 9 d~l~~vq~~l~evk~iM~~NI~~v 32 (65)
T 1gl2_A 9 DRVRNLQSEVEGVKNIMTQNVERI 32 (65)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999988765
No 25
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=31.50 E-value=94 Score=20.78 Aligned_cols=32 Identities=19% Similarity=0.273 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 89 KRIAELQSENDAVGQDLQRQLEAAEKELKQVQ 120 (137)
Q Consensus 89 ~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~ 120 (137)
.|.+.|+..+.+.++++..+.+..+.+.+.+.
T Consensus 15 qRkkkL~~Ki~el~~ei~ke~~~regl~Km~~ 46 (98)
T 2ke4_A 15 QQRKRLQQQLEERSRELQKEVDQREALKKMKD 46 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777777777776666655443
No 26
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=30.40 E-value=82 Score=18.83 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 032610 86 AQLKRIAELQSENDAVGQDLQRQ 108 (137)
Q Consensus 86 ~Q~~~i~~L~~E~~~~~~el~~~ 108 (137)
-|++.|-+|+.|.+...+.....
T Consensus 3 rQ~EEILRLErEIE~Lqrqke~~ 25 (51)
T 2lw9_A 3 KQVEEILRLEKEIEDLQRMKEQQ 25 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999997776655543
No 27
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=30.26 E-value=1.6e+02 Score=21.50 Aligned_cols=39 Identities=13% Similarity=0.233 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 88 LKRIAELQSENDAVGQDLQRQLEAAEKELKQVQELFSQA 126 (137)
Q Consensus 88 ~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~i 126 (137)
.++|++-++.++++.+.-++++++++.....-+..+...
T Consensus 11 ~e~L~~~e~l~~el~~tWeeKl~~te~~~~e~~~~l~~~ 49 (184)
T 4egx_A 11 IERLKETEKIIAELNETWEEKLRRTEAIRMEREALLAEM 49 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 568888888899999999999999998888877777654
No 28
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=29.23 E-value=55 Score=20.85 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=21.8
Q ss_pred chhhHHHHHHHHHHHHHHHhHhhh
Q 032610 2 DIISQLQEQINQIAGIAFNTFGTL 25 (137)
Q Consensus 2 DrLTQLQd~ldqLa~~f~~sig~L 25 (137)
|+|+++|..|+..-.+|...|.-|
T Consensus 15 d~l~~vq~el~ev~~iM~~NI~~v 38 (80)
T 1l4a_A 15 KRLQQTQAQVEEVVDIMRVNVDKV 38 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999988755
No 29
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=28.55 E-value=2e+02 Score=22.53 Aligned_cols=43 Identities=16% Similarity=0.092 Sum_probs=23.8
Q ss_pred HHHHHHHhC-------CCCCC--CHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 032610 69 QFDALVAAL-------PLAEG--GEEAQLK----RIAELQSENDAVGQDLQRQLEA 111 (137)
Q Consensus 69 qIe~LIdsL-------Pg~~~--see~Q~~----~i~~L~~E~~~~~~el~~~v~e 111 (137)
.|+.+.+++ |+... ++.+.++ +|.+|+.+++...+++....+.
T Consensus 200 ~v~~il~s~~f~~~~~p~~~~~~~p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~ 255 (357)
T 3rrk_A 200 AARSSLSRLGLAELRFPGAYGAMPLGKAAARMKERARLAPEELVGIREEVARLSRE 255 (357)
T ss_dssp HHHHHHHTTTCCBCCCCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCeeccCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555554 43323 5544433 6666666666666666666555
No 30
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=28.14 E-value=1.2e+02 Score=19.95 Aligned_cols=36 Identities=33% Similarity=0.616 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 90 RIAELQSENDAVGQDLQRQLEAAEKELKQVQELFSQAADN 129 (137)
Q Consensus 90 ~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~ia~~ 129 (137)
+...|+.|| ..|...|..-...+..+..+|..+-.+
T Consensus 44 r~~~Le~EN----~~Lr~~v~~L~~E~~~Lr~ll~~~p~~ 79 (87)
T 1hjb_A 44 KVLELTAEN----ERLQKKVEQLSRELSTLRNLFKQLPEP 79 (87)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHCcHH
Confidence 666777777 455555556666666777777665544
No 31
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=27.84 E-value=1.4e+02 Score=20.09 Aligned_cols=38 Identities=11% Similarity=0.151 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 90 RIAELQSENDAVGQDLQRQLEAAEKELKQVQELFSQAADNCL 131 (137)
Q Consensus 90 ~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~ia~~~l 131 (137)
++..|..|+. .|...=++-+.++.+++..|+.+++.--
T Consensus 7 ~~~~Lk~El~----~L~~~E~~LD~~i~~~~~~l~~lted~~ 44 (106)
T 2aze_B 7 RLEGLTQDLR----QLQESEQQLDHLMNICTTQLRLLSEDTD 44 (106)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 5666777773 3444455667788888888888876543
No 32
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=27.75 E-value=1.3e+02 Score=19.55 Aligned_cols=44 Identities=23% Similarity=0.219 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032610 90 RIAELQSENDAVGQDLQRQLEAAEKELKQVQELFSQAADNCLNL 133 (137)
Q Consensus 90 ~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~ia~~~l~~ 133 (137)
.|++|.-.+++..-++.+..++-..+...++..++..+..+|+-
T Consensus 35 Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~Rl~~~~~~~~~~ 78 (83)
T 2xdj_A 35 DIDSLRGQIQENQYQLNQVVERQKQILLQIDSLSSGGAAAQLEH 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----------
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHh
Confidence 44444444455555555555555555556665555555555544
No 33
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Probab=27.12 E-value=1.2e+02 Score=22.80 Aligned_cols=35 Identities=11% Similarity=0.140 Sum_probs=19.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 83 GEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELK 117 (137)
Q Consensus 83 see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~ 117 (137)
+-+.++++.+.++.++...+..+......+..|..
T Consensus 250 ~~~~ll~~~~~~e~~l~~~~~~v~~l~~~a~~L~~ 284 (326)
T 3kbt_A 250 TAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQT 284 (326)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888999998888888888888887764
No 34
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=26.60 E-value=1.6e+02 Score=20.33 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH--H---------HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 032610 81 EGGEEAQLKRIAELQSENDAVGQDLQR--Q---------LEAAEKELKQVQELFSQAADNCLNLK 134 (137)
Q Consensus 81 ~~see~Q~~~i~~L~~E~~~~~~el~~--~---------v~e~e~ll~~v~~~l~~ia~~~l~~r 134 (137)
+.|-|+=.++|.+|+-||+...+.++. . =.+++.++...-+.|...|...++.|
T Consensus 7 ~~t~EeLaaeL~kLqmENK~LKkkl~~~g~~~p~d~~LTp~qKea~I~s~~~~Lss~A~~KIe~k 71 (110)
T 2oa5_A 7 DKTYEEMVKEVERLKLENKTLKQKVKSSGAVSSDDSILTAAKRESIIVSSSRALGAVAMRKIEAK 71 (110)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHTC---------CCBCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777788999999999887777763 1 24678888888888877777666543
No 35
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=26.30 E-value=1.1e+02 Score=18.22 Aligned_cols=32 Identities=25% Similarity=0.366 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 91 IAELQSENDAVGQDLQRQLEAAEKELKQVQELFSQA 126 (137)
Q Consensus 91 i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~i 126 (137)
+..|...| ..|...++++..-+..+.+-+..+
T Consensus 18 l~~L~~rN----~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 18 IDSLAARN----SKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444 455555555555555555555444
No 36
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=25.57 E-value=96 Score=22.64 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 032610 56 PKLMSAALVKAAKQFDALVAA 76 (137)
Q Consensus 56 ~~ela~dii~kakqIe~LIds 76 (137)
+..+...|-.|.|.++.|.|-
T Consensus 84 i~dLeeel~eK~K~~e~l~DE 104 (152)
T 3a7p_A 84 IRRLKEVIALKNKNTERLNAA 104 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555443
No 37
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=25.36 E-value=1.5e+02 Score=19.40 Aligned_cols=58 Identities=10% Similarity=0.091 Sum_probs=40.9
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 67 AKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQELFSQA 126 (137)
Q Consensus 67 akqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~i 126 (137)
.+.|..+|...|+. +++.-...+.+.++....+-.-..++|.-|......|+.-++.+
T Consensus 42 ~~~~~~~~~~~~~~--~~~~r~~~l~~I~~~~~~~~~l~dEKv~lA~~~~dlvdkhirrL 99 (104)
T 4afl_A 42 DKLATEYMSSARSL--SSEEKLALLKQIQEAYGKCKEFGDDKVQLAMQTYEMVDKHIRRL 99 (104)
T ss_dssp HHHHHHHHTCCSCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCC--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777766 44444556677777777777777788888888888887777655
No 38
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=25.16 E-value=2.6e+02 Score=29.68 Aligned_cols=75 Identities=13% Similarity=0.140 Sum_probs=56.7
Q ss_pred chHhhhhhHHHHHHHHHHHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 48 DAANFAEQPKLMSAALVKAAKQFDALVAALPL-AEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQELF 123 (137)
Q Consensus 48 ~~~~f~~~~~ela~dii~kakqIe~LIdsLPg-~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l 123 (137)
+|..|-+.+..+.+.+-.|.+.|..-++.|=+ ++.-.+. .+.+..|+.++.+.+.++.++-+++++++.+|..--
T Consensus 1893 TP~syLeli~~y~~ll~~K~~el~~~~~rl~~GL~KL~et-~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~ 1968 (3245)
T 3vkg_A 1893 TPRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDT-EAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQ 1968 (3245)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678889999999999999999988877632 2111111 336778889999999999999999999888876543
No 39
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=24.95 E-value=36 Score=21.38 Aligned_cols=24 Identities=17% Similarity=0.396 Sum_probs=21.6
Q ss_pred chhhHHHHHHHHHHHHHHHhHhhh
Q 032610 2 DIISQLQEQINQIAGIAFNTFGTL 25 (137)
Q Consensus 2 DrLTQLQd~ldqLa~~f~~sig~L 25 (137)
|+|+++|..|+..-.+|...|.-+
T Consensus 8 d~l~~vq~el~ev~~iM~~NI~~v 31 (74)
T 2nps_A 8 DKIKHVQNQVDEVIDVMQENITKV 31 (74)
T ss_dssp SSSHHHHTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999988766
No 40
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=24.71 E-value=2.5e+02 Score=23.01 Aligned_cols=34 Identities=15% Similarity=0.194 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 89 KRIAELQSENDAVGQDLQRQLEAAEKELKQVQEL 122 (137)
Q Consensus 89 ~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~ 122 (137)
+.|++++.+++++.+++.+.-.....|+..++++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~el 57 (403)
T 4etp_A 24 EKIKDTELGMKELNEILIKEETVRRTLHNELQEL 57 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3566666666666665555555555555555543
No 41
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=24.28 E-value=2.2e+02 Score=21.13 Aligned_cols=60 Identities=13% Similarity=0.122 Sum_probs=35.7
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 68 KQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQELFSQAAD 128 (137)
Q Consensus 68 kqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~ia~ 128 (137)
-.++.+|..||.+.. -......+..+-+++......+......-..++..++.+......
T Consensus 52 dlL~~~v~~l~~~q~-~~~~~e~l~s~ae~ll~l~~~Le~~r~~l~~~l~~~~~L~~~~~~ 111 (192)
T 2p22_C 52 HQLELYVTKFNPLTD-FAGKIHAFRDQFKQLEENFEDLHEQKDKVQALLENARILESKYVA 111 (192)
T ss_dssp HHHHHHGGGGSCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchhHHH-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888887632 223344556666666666666666666666666666666555543
No 42
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=24.09 E-value=1.3e+02 Score=18.36 Aligned_cols=35 Identities=20% Similarity=0.361 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 90 RIAELQSENDAVGQDLQRQLEAAEKELKQVQELFS 124 (137)
Q Consensus 90 ~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~ 124 (137)
.+.+|..|++...+.+++..+....|=+.|...|.
T Consensus 18 qV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~~k 52 (56)
T 2w6b_A 18 EVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLK 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566777777777776666655555445554444
No 43
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=23.75 E-value=71 Score=20.83 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=21.7
Q ss_pred chhhHHHHHHHHHHHHHHHhHhhh
Q 032610 2 DIISQLQEQINQIAGIAFNTFGTL 25 (137)
Q Consensus 2 DrLTQLQd~ldqLa~~f~~sig~L 25 (137)
|+|+++|..||+.-..|...|.-+
T Consensus 5 d~l~~vq~ev~evk~iM~~NI~kv 28 (91)
T 3hd7_A 5 RRLQQTQAQVDEVVDIMRVNVDKV 28 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999988755
No 44
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=23.44 E-value=1.3e+02 Score=21.81 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 90 RIAELQSENDAVGQDLQRQLEAAEKELKQVQELFSQA 126 (137)
Q Consensus 90 ~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~i 126 (137)
.+..|+.++..++.++...-.+-..+...++..+..+
T Consensus 99 sv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el 135 (155)
T 2efr_A 99 SVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKV 135 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333333444444443333
No 45
>2y39_A Nickel and cobalt resistance protein CNRR; metal binding protein; 1.41A {Cupriavidus metallidurans} PDB: 2y3b_A 2y3d_A 2y3g_A* 2y3h_A 3epv_A*
Probab=23.18 E-value=85 Score=21.95 Aligned_cols=34 Identities=15% Similarity=0.117 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 90 RIAELQSENDAVGQDLQRQLEAAEKELKQVQELF 123 (137)
Q Consensus 90 ~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l 123 (137)
+...|+.++..++.+|..++.......-.|..++
T Consensus 39 ~r~~le~emRaan~~La~ai~~~~~~~p~V~aai 72 (118)
T 2y39_A 39 RRREIETRLRAANGKLADAIAKNPAWSPEVEAAT 72 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHH
Confidence 5566777777777777777653333333333333
No 46
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=22.97 E-value=1.5e+02 Score=18.65 Aligned_cols=33 Identities=9% Similarity=0.126 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 90 RIAELQSENDAVGQDLQRQLEAAEKELKQVQEL 122 (137)
Q Consensus 90 ~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~ 122 (137)
.|+.|+.+..+.+........+-+.|-..|..+
T Consensus 30 ~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L 62 (70)
T 1gd2_E 30 HLKALETQVVTLKELHSSTTLENDQLRQKVRQL 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666555555555444555555444444
No 47
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=22.47 E-value=1.1e+02 Score=19.68 Aligned_cols=33 Identities=18% Similarity=0.252 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 85 EAQLKRIAELQSENDAVGQDLQRQLEAAEKELK 117 (137)
Q Consensus 85 e~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~ 117 (137)
+.|.+.|.++......+...+..+.++...+++
T Consensus 53 d~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ll~ 85 (87)
T 1sfc_D 53 DTQNRQIDRIMEKADSNKTRIDEANQRATKMLG 85 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Confidence 467778888888887777777777777666543
No 48
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=22.19 E-value=79 Score=20.92 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=21.8
Q ss_pred chhhHHHHHHHHHHHHHHHhHhhh
Q 032610 2 DIISQLQEQINQIAGIAFNTFGTL 25 (137)
Q Consensus 2 DrLTQLQd~ldqLa~~f~~sig~L 25 (137)
|+|+++|..|+..-.+|...|.-|
T Consensus 30 d~l~~vq~eldeVk~IM~~NI~kv 53 (96)
T 1sfc_A 30 RRLQQTQAQVDEVVDIMRVNVDKV 53 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999998766
No 49
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=21.97 E-value=1.6e+02 Score=18.57 Aligned_cols=35 Identities=14% Similarity=0.141 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 84 EEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQ 118 (137)
Q Consensus 84 ee~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~ 118 (137)
-+.|...|..|......+...+..+.++...++++
T Consensus 42 l~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~ 76 (82)
T 2nps_D 42 LEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHM 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688889999999998888888888888777664
No 50
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=21.81 E-value=1.3e+02 Score=24.34 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032610 88 LKRIAELQSENDAVGQDLQRQL 109 (137)
Q Consensus 88 ~~~i~~L~~E~~~~~~el~~~v 109 (137)
.++|++|+.|....+.+++..-
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~ 463 (471)
T 3mq9_A 442 QKKVEELEGEITTLNHKLQDAS 463 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555444433
No 51
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=21.19 E-value=2e+02 Score=19.38 Aligned_cols=33 Identities=27% Similarity=0.313 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 90 RIAELQSENDAVGQDLQRQLEAAEKELKQVQEL 122 (137)
Q Consensus 90 ~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~ 122 (137)
++..|+..++...+.+...-.....+...++.+
T Consensus 96 r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 96 QKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444443333333333333333333
No 52
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=21.10 E-value=1.4e+02 Score=17.77 Aligned_cols=31 Identities=13% Similarity=0.148 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 85 EAQLKRIAELQSENDAVGQDLQRQLEAAEKE 115 (137)
Q Consensus 85 e~Q~~~i~~L~~E~~~~~~el~~~v~e~e~l 115 (137)
+.|...|.++......+...+..+.++...+
T Consensus 33 ~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~l 63 (65)
T 1gl2_D 33 DEQNEIIDDLANLVENTDEKLRTEARRVTLV 63 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466666666666666666666555554443
No 53
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=20.31 E-value=2.4e+02 Score=26.34 Aligned_cols=38 Identities=13% Similarity=0.173 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 89 KRIAELQSENDAVGQDLQRQLEAAEKELKQVQELFSQA 126 (137)
Q Consensus 89 ~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~i 126 (137)
++++.|++|+.+.++++....++.+.+-+..+.+-..+
T Consensus 984 ~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L 1021 (1080)
T 2dfs_A 984 NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHET 1021 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888888888888887777777766655554333
No 54
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=20.07 E-value=3.1e+02 Score=21.23 Aligned_cols=46 Identities=15% Similarity=0.212 Sum_probs=25.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032610 80 AEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQELFSQAADN 129 (137)
Q Consensus 80 ~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~ia~~ 129 (137)
+.+-.++=.++|..|++.+.+ ..++....+..+++..+.++++.+.
T Consensus 4 lnsRvd~~EErIs~le~rlee----i~q~eq~~ekrik~ne~sL~dL~d~ 49 (233)
T 2yko_A 4 LRSRCDQLEERVSAAEDEINE----IKREGKFREKRIKRNEQSLQEIWDY 49 (233)
T ss_dssp ---CHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333434467777766633 3455555666666667777776654
Done!