Query 032611
Match_columns 137
No_of_seqs 112 out of 235
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 05:20:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032611.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032611hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_T Photosystem II reaction 50.2 22 0.00076 19.6 3.4 22 3-24 2-23 (32)
2 4b4a_A TATC, SEC-independent p 29.9 47 0.0016 25.8 3.7 23 67-89 68-90 (249)
3 1n0x_P B2.1 peptide, immunoglo 23.1 13 0.00043 19.2 -0.5 11 27-37 6-16 (26)
4 3eyy_A Putative iron uptake re 22.8 43 0.0015 23.3 2.0 35 77-111 33-68 (145)
5 3ri2_A Transcriptional regulat 21.3 94 0.0032 21.2 3.6 36 76-111 32-68 (123)
6 1mzb_A Ferric uptake regulatio 20.0 46 0.0016 22.8 1.7 35 77-111 34-69 (136)
7 3mwm_A ZUR, putative metal upt 19.9 17 0.00057 25.4 -0.7 35 77-111 29-64 (139)
8 2fe3_A Peroxide operon regulat 18.1 57 0.0019 22.6 1.8 35 77-111 37-72 (145)
9 2xig_A Ferric uptake regulatio 17.4 41 0.0014 23.6 1.0 35 77-111 42-77 (150)
10 3cjs_B 50S ribosomal protein L 17.1 34 0.0012 21.9 0.4 13 35-47 31-43 (72)
No 1
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=50.22 E-value=22 Score=19.59 Aligned_cols=22 Identities=18% Similarity=0.458 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 032611 3 DLFIWLASFFILIALLVLVVYQ 24 (137)
Q Consensus 3 ~~~~wi~a~~~~~~ll~~~v~~ 24 (137)
|.+++.+.++.+.+.+|..+++
T Consensus 2 Ea~vYt~ll~~tlgiiFFAI~F 23 (32)
T 3arc_T 2 ETITYVFIFACIIALFFFAIFF 23 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHhhhh
Confidence 7778888887777777666543
No 2
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=29.89 E-value=47 Score=25.79 Aligned_cols=23 Identities=9% Similarity=0.193 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcc
Q 032611 67 GHWFMSLLCVPYLYYNVRLYTQR 89 (137)
Q Consensus 67 g~W~~~lln~P~l~y~~~~~~~~ 89 (137)
+-+...++..|...|.+|++.+.
T Consensus 68 s~~~g~~~a~P~ilyQiw~Fi~P 90 (249)
T 4b4a_A 68 SLAVGFIIASPVILYQFWRFIEP 90 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34477899999999999999875
No 3
>1n0x_P B2.1 peptide, immunoglobulin heavy chain; antibody-peptide complex, peptide dimer, immune system; HET: CXS; 1.80A {Homo sapiens}
Probab=23.14 E-value=13 Score=19.25 Aligned_cols=11 Identities=36% Similarity=0.434 Sum_probs=8.5
Q ss_pred hhhccccccCC
Q 032611 27 CLADLEFDYIN 37 (137)
Q Consensus 27 ~l~DLe~D~iN 37 (137)
++||||..++-
T Consensus 6 mfsdlenrcia 16 (26)
T 1n0x_P 6 MFSDLENRCIA 16 (26)
T ss_dssp EEETTTTEEEE
T ss_pred hhhHHHHHHHH
Confidence 57899988764
No 4
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=22.75 E-value=43 Score=23.34 Aligned_cols=35 Identities=6% Similarity=0.075 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhccCC-cCchhhHhhhHHHHHHHhHH
Q 032611 77 PYLYYNVRLYTQRQH-LVDVTEIFNQLHWEKKQRLF 111 (137)
Q Consensus 77 P~l~y~~~~~~~~~~-l~D~TeIf~~L~~~~k~~~i 111 (137)
|+.+..++.-.++++ -+++++|||+|+.....|.+
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 667888887666654 68999999999998887653
No 5
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=21.27 E-value=94 Score=21.21 Aligned_cols=36 Identities=11% Similarity=0.163 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhccC-CcCchhhHhhhHHHHHHHhHH
Q 032611 76 VPYLYYNVRLYTQRQ-HLVDVTEIFNQLHWEKKQRLF 111 (137)
Q Consensus 76 ~P~l~y~~~~~~~~~-~l~D~TeIf~~L~~~~k~~~i 111 (137)
-|.-.|.+.+-.+.. .-+++.+++..|++.++++++
T Consensus 32 ~p~~GYei~~~l~~~~~~is~gtlY~~L~rLe~~GlI 68 (123)
T 3ri2_A 32 EPAYGYALVKSLADHGIPIEANTLYPLMRRLESQGLL 68 (123)
T ss_dssp SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred CCCCHHHHHHHHHHhCCCCCcchHHHHHHHHHHCCCE
Confidence 577888888766544 456788999999999998865
No 6
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=20.00 E-value=46 Score=22.79 Aligned_cols=35 Identities=11% Similarity=-0.006 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhccC-CcCchhhHhhhHHHHHHHhHH
Q 032611 77 PYLYYNVRLYTQRQ-HLVDVTEIFNQLHWEKKQRLF 111 (137)
Q Consensus 77 P~l~y~~~~~~~~~-~l~D~TeIf~~L~~~~k~~~i 111 (137)
|+.+..++.-.+++ .-++.++|+|+|+.....+.+
T Consensus 34 ~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 34 HMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 56778888666654 468999999999998887654
No 7
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=19.92 E-value=17 Score=25.35 Aligned_cols=35 Identities=9% Similarity=0.007 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhccC-CcCchhhHhhhHHHHHHHhHH
Q 032611 77 PYLYYNVRLYTQRQ-HLVDVTEIFNQLHWEKKQRLF 111 (137)
Q Consensus 77 P~l~y~~~~~~~~~-~l~D~TeIf~~L~~~~k~~~i 111 (137)
|+.+..++.-.+++ .-++.++|||+|+.....+.+
T Consensus 29 h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 29 FRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp CEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 55677777666554 357999999999988877653
No 8
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=18.07 E-value=57 Score=22.59 Aligned_cols=35 Identities=11% Similarity=0.102 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhccCC-cCchhhHhhhHHHHHHHhHH
Q 032611 77 PYLYYNVRLYTQRQH-LVDVTEIFNQLHWEKKQRLF 111 (137)
Q Consensus 77 P~l~y~~~~~~~~~~-l~D~TeIf~~L~~~~k~~~i 111 (137)
|+.+..++...++++ -++.++|+|+|+.....|.+
T Consensus 37 ~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 37 HPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp CCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred CCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 677888887776654 68999999999998877653
No 9
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=17.43 E-value=41 Score=23.57 Aligned_cols=35 Identities=6% Similarity=0.190 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhccC-CcCchhhHhhhHHHHHHHhHH
Q 032611 77 PYLYYNVRLYTQRQ-HLVDVTEIFNQLHWEKKQRLF 111 (137)
Q Consensus 77 P~l~y~~~~~~~~~-~l~D~TeIf~~L~~~~k~~~i 111 (137)
|+.+..++...+++ .-+++++|||+|+.....|.+
T Consensus 42 ~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 42 HLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp CBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred CCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 67788888766654 458999999999988877653
No 10
>3cjs_B 50S ribosomal protein L11, ribosomal protein L11 methyltransferase; S-adenosyl-L-methionine dependent methyltransferase; 1.37A {Thermus thermophilus} SCOP: d.47.1.1 PDB: 3cju_B* 2bcw_A
Probab=17.13 E-value=34 Score=21.89 Aligned_cols=13 Identities=15% Similarity=-0.023 Sum_probs=11.1
Q ss_pred cCCHHHhhhhcCc
Q 032611 35 YINPYDSSSRINK 47 (137)
Q Consensus 35 ~iNp~d~~~~lN~ 47 (137)
=+|++|.|+.+|.
T Consensus 31 Gvni~~f~k~fN~ 43 (72)
T 3cjs_B 31 GANIMEFVKAFNA 43 (72)
T ss_dssp TCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 3799999999984
Done!