Query 032611
Match_columns 137
No_of_seqs 112 out of 235
Neff 5.8
Searched_HMMs 13730
Date Mon Mar 25 05:20:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032611.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032611hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mzba_ a.4.5.42 (A:) Ferric u 25.4 14 0.001 23.6 1.7 35 77-111 32-67 (134)
2 d2axtt1 f.23.34.1 (T:1-30) Pho 19.3 55 0.004 16.0 3.4 21 3-23 2-22 (30)
3 d1otsa_ f.20.1.1 (A:) Clc chlo 11.5 1.3E+02 0.0097 22.5 4.7 43 65-108 399-443 (444)
4 d1u9pa1 a.43.1.1 (A:72-107) Ar 11.4 29 0.0021 17.9 0.4 21 90-110 14-35 (36)
5 d1mmsa2 d.47.1.1 (A:8-70) Ribo 11.1 30 0.0022 20.2 0.4 14 34-47 24-37 (63)
6 d1of9a_ a.64.1.4 (A:) Ameobapo 9.3 56 0.004 18.6 1.2 25 21-46 51-75 (77)
7 d2gtga1 a.64.1.1 (A:2-79) Sapo 9.2 1.1E+02 0.0079 16.9 2.6 24 22-46 52-75 (78)
8 g2bi6.2 g.3.12.1 (L:,H:1-7,H:3 9.1 23 0.0016 17.3 -0.6 10 33-42 18-27 (28)
9 d1nkla_ a.64.1.1 (A:) NK-lysin 9.0 1.1E+02 0.0081 17.0 2.6 27 19-46 48-74 (78)
10 d1q23a_ c.43.1.1 (A:) Chloramp 8.8 52 0.0038 22.7 1.1 14 92-105 34-47 (214)
No 1
>d1mzba_ a.4.5.42 (A:) Ferric uptake regulation protein, FUR {Pseudomonas aeruginosa [TaxId: 287]}
Probab=25.41 E-value=14 Score=23.65 Aligned_cols=35 Identities=11% Similarity=-0.006 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhccC-CcCchhhHhhhHHHHHHHhHH
Q 032611 77 PYLYYNVRLYTQRQ-HLVDVTEIFNQLHWEKKQRLF 111 (137)
Q Consensus 77 P~l~y~~~~~~~~~-~l~D~TeIf~~L~~~~k~~~i 111 (137)
|+.+..++...+.+ .-++.++|||+|+.....+.+
T Consensus 32 h~sa~ei~~~l~~~~~~i~~aTVYR~L~~l~e~gli 67 (134)
T d1mzba_ 32 HMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 67 (134)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred CCCHHHHHHHHHHhCCCccHHHHHHHHHHHHhccEE
Confidence 67778888766665 467999999999988877643
No 2
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=19.28 E-value=55 Score=16.05 Aligned_cols=21 Identities=19% Similarity=0.521 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 032611 3 DLFIWLASFFILIALLVLVVY 23 (137)
Q Consensus 3 ~~~~wi~a~~~~~~ll~~~v~ 23 (137)
|...+++.|....++.+..++
T Consensus 2 e~i~yv~ifac~i~lfffaif 22 (30)
T d2axtt1 2 ETITYVFIFACIIALFFFAIF 22 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeehHHHHHHHHHHHHHHHH
Confidence 556677666655566555554
No 3
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=11.53 E-value=1.3e+02 Score=22.54 Aligned_cols=43 Identities=9% Similarity=0.101 Sum_probs=30.4
Q ss_pred HHhH--HHHHHHHHHHHHHHHHHHhccCCcCchhhHhhhHHHHHHH
Q 032611 65 ITGH--WFMSLLCVPYLYYNVRLYTQRQHLVDVTEIFNQLHWEKKQ 108 (137)
Q Consensus 65 l~g~--W~~~lln~P~l~y~~~~~~~~~~l~D~TeIf~~L~~~~k~ 108 (137)
++|. -+.-++-.-+.++-+.+..+++.+|| +-+-|+++++++|
T Consensus 399 ltg~~~~~~p~~ia~~~a~~v~~~~~~~siY~-~~l~~~~~~~~~~ 443 (444)
T d1otsa_ 399 MTDNYQLILPMIITGLGATLLAQFTGGKPLYS-AILARTLAKQEAE 443 (444)
T ss_dssp HHCCGGGHHHHHHHHHHHHHHHHTTTCCCHHH-HHHHHHHHHHHHC
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHhCCCChHH-HHHHHHHHhhhcc
Confidence 4553 33344556667888888888888888 6677788888776
No 4
>d1u9pa1 a.43.1.1 (A:72-107) Arc repressor {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=11.43 E-value=29 Score=17.87 Aligned_cols=21 Identities=19% Similarity=0.086 Sum_probs=14.0
Q ss_pred CCcCchhhHhh-hHHHHHHHhH
Q 032611 90 QHLVDVTEIFN-QLHWEKKQRL 110 (137)
Q Consensus 90 ~~l~D~TeIf~-~L~~~~k~~~ 110 (137)
.|.---++|++ .....|||+.
T Consensus 14 ng~s~ns~iy~~vmes~kkegr 35 (36)
T d1u9pa1 14 NGRSVNSEIYQRVMESFKKEGR 35 (36)
T ss_dssp HTCCHHHHHHHHHHHHHHHTTC
T ss_pred cCcchhHHHHHHHHHHHHHccC
Confidence 34545578887 6777777764
No 5
>d1mmsa2 d.47.1.1 (A:8-70) Ribosomal protein L11, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=11.09 E-value=30 Score=20.19 Aligned_cols=14 Identities=21% Similarity=0.233 Sum_probs=11.3
Q ss_pred ccCCHHHhhhhcCc
Q 032611 34 DYINPYDSSSRINK 47 (137)
Q Consensus 34 D~iNp~d~~~~lN~ 47 (137)
-=+|.+|.|+..|.
T Consensus 24 ~GiNi~~F~k~fN~ 37 (63)
T d1mmsa2 24 HGVNIMEFCKRFNA 37 (63)
T ss_dssp TTCCHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHH
Confidence 34799999999983
No 6
>d1of9a_ a.64.1.4 (A:) Ameobapore A {Entamoeba histolytica [TaxId: 5759]}
Probab=9.27 E-value=56 Score=18.58 Aligned_cols=25 Identities=8% Similarity=-0.077 Sum_probs=16.8
Q ss_pred HHHHHhhhhccccccCCHHHhhhhcC
Q 032611 21 VVYQLMCLADLEFDYINPYDSSSRIN 46 (137)
Q Consensus 21 ~v~~~i~l~DLe~D~iNp~d~~~~lN 46 (137)
.-|.-..++.++. ..||.+.|+.++
T Consensus 51 ~~y~~~ii~~l~~-~~~p~~iC~~l~ 75 (77)
T d1of9a_ 51 DFGIDKLIQLIED-KVDANAICAKIH 75 (77)
T ss_dssp HHCHHHHHHHHHH-TCCHHHHHHHHS
T ss_pred HHHHHHHHHHHHH-cCCHHHHHHhcC
Confidence 4444555666666 459999998875
No 7
>d2gtga1 a.64.1.1 (A:2-79) Saposin C {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.16 E-value=1.1e+02 Score=16.88 Aligned_cols=24 Identities=21% Similarity=0.094 Sum_probs=15.3
Q ss_pred HHHHhhhhccccccCCHHHhhhhcC
Q 032611 22 VYQLMCLADLEFDYINPYDSSSRIN 46 (137)
Q Consensus 22 v~~~i~l~DLe~D~iNp~d~~~~lN 46 (137)
-|.=..++-++. .+||-+.|+.++
T Consensus 52 ~y~~~ii~~l~~-~~~p~~iC~~l~ 75 (78)
T d2gtga1 52 TYGSSILSILLE-EVSPELVCSMLH 75 (78)
T ss_dssp HHHHHHHHHHHT-TCCHHHHHHHTT
T ss_pred HHHHHHHHHHHh-CCCHHHHHHHcC
Confidence 333333444544 679999999876
No 8
>g2bi6.2 g.3.12.1 (L:,H:1-7,H:32-41) Bromelain inhibitor VI (cysteine protease inhibitor) {Pineapple (Ananas comosus) [TaxId: 4615]}
Probab=9.09 E-value=23 Score=17.27 Aligned_cols=10 Identities=40% Similarity=0.627 Sum_probs=7.6
Q ss_pred cccCCHHHhh
Q 032611 33 FDYINPYDSS 42 (137)
Q Consensus 33 ~D~iNp~d~~ 42 (137)
+|.++|-||-
T Consensus 18 cdlispndcv 27 (28)
T g2bi6.2 18 CDLISPNDCV 27 (28)
T ss_dssp ECCCCSSSCC
T ss_pred eeeecccccc
Confidence 6888888763
No 9
>d1nkla_ a.64.1.1 (A:) NK-lysin, NKL {Pig (Sus scrofa) [TaxId: 9823]}
Probab=8.98 E-value=1.1e+02 Score=16.97 Aligned_cols=27 Identities=11% Similarity=0.006 Sum_probs=18.0
Q ss_pred HHHHHHHhhhhccccccCCHHHhhhhcC
Q 032611 19 VLVVYQLMCLADLEFDYINPYDSSSRIN 46 (137)
Q Consensus 19 ~~~v~~~i~l~DLe~D~iNp~d~~~~lN 46 (137)
+..-|.-..++.++. ..||-+.|+.++
T Consensus 48 ~v~~y~~~ii~~l~~-~~~p~~iC~~l~ 74 (78)
T d1nkla_ 48 IMRSFLRRISWDILT-GKKPQAICVDIK 74 (78)
T ss_dssp HHHHHHHHHHHHHHT-TCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHh-CCCHHHHHhhhC
Confidence 334455555566655 569999999875
No 10
>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]}
Probab=8.83 E-value=52 Score=22.72 Aligned_cols=14 Identities=14% Similarity=0.337 Sum_probs=10.3
Q ss_pred cCchhhHhhhHHHH
Q 032611 92 LVDVTEIFNQLHWE 105 (137)
Q Consensus 92 l~D~TeIf~~L~~~ 105 (137)
-+|+|+..+..+++
T Consensus 34 ~vDvT~l~~~~K~~ 47 (214)
T d1q23a_ 34 QLDITAFLKTVKKN 47 (214)
T ss_dssp EEECHHHHHHHHHT
T ss_pred EEcHHHHHHHHHHc
Confidence 48999998766544
Done!