BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032613
(137 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|388509762|gb|AFK42947.1| unknown [Lotus japonicus]
Length = 139
Score = 237 bits (604), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 116/137 (84%), Positives = 127/137 (92%)
Query: 1 MDIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAANFAEQPKLMS 60
MDIISQLQEQ+N IA +AFNT GTLQRDAPP R+SPNYPEPPA PTED A F+EQPKLMS
Sbjct: 1 MDIISQLQEQVNLIANLAFNTIGTLQRDAPPNRISPNYPEPPAQPTEDGATFSEQPKLMS 60
Query: 61 AALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQ 120
LVKAAKQFDALVAALP+AEGGEEAQLKRIAELQ+ENDA+GQ+LQ+QLEAAEKEL QVQ
Sbjct: 61 TGLVKAAKQFDALVAALPIAEGGEEAQLKRIAELQAENDAIGQELQKQLEAAEKELHQVQ 120
Query: 121 ELFSQAADNCLNLKKPN 137
ELFSQA+DNCLNLKKP+
Sbjct: 121 ELFSQASDNCLNLKKPD 137
>gi|224076269|ref|XP_002304917.1| predicted protein [Populus trichocarpa]
gi|222847881|gb|EEE85428.1| predicted protein [Populus trichocarpa]
Length = 137
Score = 236 bits (601), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 118/137 (86%), Positives = 126/137 (91%)
Query: 1 MDIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAANFAEQPKLMS 60
MDIISQLQEQ+NQIAG+ FNTFGTLQRDAP RLS NYPEPP NPTEDAA+F EQPK MS
Sbjct: 1 MDIISQLQEQVNQIAGLTFNTFGTLQRDAPSARLSQNYPEPPPNPTEDAASFPEQPKQMS 60
Query: 61 AALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQ 120
AALVKAAKQFDALVAALPL+EGGEEAQLKRIAELQ+ENDAVGQ+LQRQLEAAE+ELK VQ
Sbjct: 61 AALVKAAKQFDALVAALPLSEGGEEAQLKRIAELQAENDAVGQELQRQLEAAERELKLVQ 120
Query: 121 ELFSQAADNCLNLKKPN 137
ELF Q DNCLNLKKP+
Sbjct: 121 ELFGQTTDNCLNLKKPD 137
>gi|255556538|ref|XP_002519303.1| conserved hypothetical protein [Ricinus communis]
gi|223541618|gb|EEF43167.1| conserved hypothetical protein [Ricinus communis]
Length = 135
Score = 233 bits (594), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 121/138 (87%), Positives = 128/138 (92%), Gaps = 4/138 (2%)
Query: 1 MDIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPA-NPTEDAANFAEQPKLM 59
MDIISQLQEQ++ IA +AFNT GTLQRDAPPVRLSPNYPEPPA NP ED A+QPKLM
Sbjct: 1 MDIISQLQEQVDTIASLAFNTIGTLQRDAPPVRLSPNYPEPPASNPAED---IADQPKLM 57
Query: 60 SAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQV 119
SAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQ+ENDAVGQ+LQRQLEAAEKELKQV
Sbjct: 58 SAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQAENDAVGQELQRQLEAAEKELKQV 117
Query: 120 QELFSQAADNCLNLKKPN 137
QELFSQA DNCLNLKKP+
Sbjct: 118 QELFSQATDNCLNLKKPD 135
>gi|449463842|ref|XP_004149640.1| PREDICTED: mediator of RNA polymerase II transcription subunit
21-like [Cucumis sativus]
Length = 138
Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 116/136 (85%), Positives = 125/136 (91%), Gaps = 1/136 (0%)
Query: 1 MDIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPAN-PTEDAANFAEQPKLM 59
MDIISQLQEQ+N IA +AFNTFGTLQRDAPPVRLSPNYPEPP+ PTED A AEQPKLM
Sbjct: 1 MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLM 60
Query: 60 SAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQV 119
SAALVKAAKQFDALVAALPL++GGEE QLKRIAELQ+END VGQ+LQ+QL+AAEKEL QV
Sbjct: 61 SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEKELVQV 120
Query: 120 QELFSQAADNCLNLKK 135
QELFSQ ADNCLNLKK
Sbjct: 121 QELFSQVADNCLNLKK 136
>gi|351720654|ref|NP_001235648.1| uncharacterized protein LOC100306480 [Glycine max]
gi|255628677|gb|ACU14683.1| unknown [Glycine max]
Length = 139
Score = 228 bits (581), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 111/137 (81%), Positives = 125/137 (91%)
Query: 1 MDIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAANFAEQPKLMS 60
MDIISQLQEQ+N IA +AFNT GTLQRDAPP RLSPNYPEPPA+ TED +NF+EQPKLMS
Sbjct: 1 MDIISQLQEQVNLIAHLAFNTVGTLQRDAPPNRLSPNYPEPPAHATEDGSNFSEQPKLMS 60
Query: 61 AALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQ 120
LVKAAKQFDALVAALP++E GEEAQLKRI+ELQ+ENDA+G +LQ+QLEAAEKEL QVQ
Sbjct: 61 TTLVKAAKQFDALVAALPISESGEEAQLKRISELQAENDAIGLELQKQLEAAEKELNQVQ 120
Query: 121 ELFSQAADNCLNLKKPN 137
ELF QA+DNCLNLKKP+
Sbjct: 121 ELFRQASDNCLNLKKPD 137
>gi|449522780|ref|XP_004168404.1| PREDICTED: mediator of RNA polymerase II transcription subunit
21-like [Cucumis sativus]
Length = 138
Score = 227 bits (579), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 115/136 (84%), Positives = 124/136 (91%), Gaps = 1/136 (0%)
Query: 1 MDIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPAN-PTEDAANFAEQPKLM 59
MDIISQLQEQ+N IA +AFNTFGTLQRDAPPVRLSPNYPEPP+ PTED A AEQPKLM
Sbjct: 1 MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLM 60
Query: 60 SAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQV 119
SAALVKAAKQFDALVAALPL++GGEE QLKRIAELQ+END VGQ+LQ+QL+AAEKEL QV
Sbjct: 61 SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEKELVQV 120
Query: 120 QELFSQAADNCLNLKK 135
QELFSQ ADNCLNL K
Sbjct: 121 QELFSQVADNCLNLMK 136
>gi|297809651|ref|XP_002872709.1| hypothetical protein ARALYDRAFT_352398 [Arabidopsis lyrata subsp.
lyrata]
gi|297318546|gb|EFH48968.1| hypothetical protein ARALYDRAFT_352398 [Arabidopsis lyrata subsp.
lyrata]
Length = 139
Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 112/138 (81%), Positives = 122/138 (88%), Gaps = 2/138 (1%)
Query: 1 MDIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPT--EDAANFAEQPKL 58
MDIISQLQEQ+N IA I FN FGTLQRDAPPV+LSPNYPEPPA T +DA F EQPK
Sbjct: 1 MDIISQLQEQVNTIAAITFNAFGTLQRDAPPVQLSPNYPEPPATTTAVDDATPFPEQPKQ 60
Query: 59 MSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQ 118
+SA LVKAAKQFDALVAALPL+EGGEEAQLKRIA+LQ END VGQ+LQ+QLEAAEKELKQ
Sbjct: 61 LSAGLVKAAKQFDALVAALPLSEGGEEAQLKRIAQLQVENDLVGQELQKQLEAAEKELKQ 120
Query: 119 VQELFSQAADNCLNLKKP 136
VQELF QAAD+CLN+KKP
Sbjct: 121 VQELFGQAADSCLNMKKP 138
>gi|7267236|emb|CAB80843.1| hypothetical protein [Arabidopsis thaliana]
Length = 381
Score = 213 bits (543), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 111/138 (80%), Positives = 118/138 (85%), Gaps = 2/138 (1%)
Query: 1 MDIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAAN--FAEQPKL 58
MDIISQLQEQ+N IA I FN FGTLQRDAPPV+LSPNYPEPPA T F EQPK
Sbjct: 243 MDIISQLQEQVNTIAAITFNAFGTLQRDAPPVQLSPNYPEPPATTTVTDDATPFPEQPKQ 302
Query: 59 MSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQ 118
+SA LVKAAKQFDALVAALPL+EGGE AQLKRIAELQ END VGQ+LQ+QLEAAEKELKQ
Sbjct: 303 LSAGLVKAAKQFDALVAALPLSEGGEGAQLKRIAELQVENDLVGQELQKQLEAAEKELKQ 362
Query: 119 VQELFSQAADNCLNLKKP 136
VQELF QAADNCLN+KKP
Sbjct: 363 VQELFGQAADNCLNMKKP 380
>gi|27754568|gb|AAO22731.1| unknown protein [Arabidopsis thaliana]
Length = 162
Score = 209 bits (533), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 111/138 (80%), Positives = 118/138 (85%), Gaps = 2/138 (1%)
Query: 1 MDIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAAN--FAEQPKL 58
MDIISQLQEQ+N IA I FN FGTLQRDAPPV+LSPNYPEPPA T F EQPK
Sbjct: 24 MDIISQLQEQVNTIAAITFNAFGTLQRDAPPVQLSPNYPEPPATTTVTDDATPFPEQPKQ 83
Query: 59 MSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQ 118
+SA LVKAAKQFDALVAALPL+EGGE AQLKRIAELQ END VGQ+LQ+QLEAAEKELKQ
Sbjct: 84 LSAGLVKAAKQFDALVAALPLSEGGEGAQLKRIAELQVENDLVGQELQKQLEAAEKELKQ 143
Query: 119 VQELFSQAADNCLNLKKP 136
VQELF QAADNCLN+KKP
Sbjct: 144 VQELFGQAADNCLNMKKP 161
>gi|334186358|ref|NP_192387.2| protein mediator 21 [Arabidopsis thaliana]
gi|302425116|sp|C0LU16.1|MED21_ARATH RecName: Full=Mediator of RNA polymerase II transcription subunit
21; AltName: Full=Mediator complex subunit 21; AltName:
Full=RNAPII complex component SRB7
gi|225126090|gb|ACN81041.1| MED21/SRB7 [Arabidopsis thaliana]
gi|332657025|gb|AEE82425.1| protein mediator 21 [Arabidopsis thaliana]
Length = 139
Score = 209 bits (533), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 111/138 (80%), Positives = 118/138 (85%), Gaps = 2/138 (1%)
Query: 1 MDIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAAN--FAEQPKL 58
MDIISQLQEQ+N IA I FN FGTLQRDAPPV+LSPNYPEPPA T F EQPK
Sbjct: 1 MDIISQLQEQVNTIAAITFNAFGTLQRDAPPVQLSPNYPEPPATTTVTDDATPFPEQPKQ 60
Query: 59 MSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQ 118
+SA LVKAAKQFDALVAALPL+EGGE AQLKRIAELQ END VGQ+LQ+QLEAAEKELKQ
Sbjct: 61 LSAGLVKAAKQFDALVAALPLSEGGEGAQLKRIAELQVENDLVGQELQKQLEAAEKELKQ 120
Query: 119 VQELFSQAADNCLNLKKP 136
VQELF QAADNCLN+KKP
Sbjct: 121 VQELFGQAADNCLNMKKP 138
>gi|346470003|gb|AEO34846.1| hypothetical protein [Amblyomma maculatum]
Length = 136
Score = 204 bits (520), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 106/137 (77%), Positives = 119/137 (86%), Gaps = 1/137 (0%)
Query: 1 MDIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAANFAEQPKLMS 60
MDIISQLQEQ+N+IA I NTFGTLQRDAP VRLSPNYPEP ANP+E+ N AEQ K MS
Sbjct: 1 MDIISQLQEQVNEIAFITLNTFGTLQRDAPAVRLSPNYPEPAANPSEETINTAEQAKTMS 60
Query: 61 AALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQ 120
LV++AK+FDALVAALP GGEEAQLKRI ELQ+EN+AVGQ+LQ QLEAAE+ELK VQ
Sbjct: 61 KVLVQSAKKFDALVAALP-PLGGEEAQLKRIQELQAENEAVGQELQNQLEAAEQELKLVQ 119
Query: 121 ELFSQAADNCLNLKKPN 137
ELF+QAADNCLNLKKP+
Sbjct: 120 ELFNQAADNCLNLKKPD 136
>gi|217071846|gb|ACJ84283.1| unknown [Medicago truncatula]
gi|388519049|gb|AFK47586.1| unknown [Medicago truncatula]
Length = 139
Score = 196 bits (499), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 108/137 (78%), Positives = 122/137 (89%)
Query: 1 MDIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAANFAEQPKLMS 60
MDIISQLQEQ+N IA +A NT GTLQR APP RLSPNYPEPP +PTED ANF+E+PKLM
Sbjct: 1 MDIISQLQEQVNLIANLALNTVGTLQRGAPPNRLSPNYPEPPPHPTEDGANFSEEPKLMG 60
Query: 61 AALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQ 120
A+LVKAAKQFD LVA+LP++E G EAQLKRIAELQ+ENDAVGQ+LQ+QLEAAEKEL QVQ
Sbjct: 61 ASLVKAAKQFDLLVASLPISETGGEAQLKRIAELQAENDAVGQELQKQLEAAEKELNQVQ 120
Query: 121 ELFSQAADNCLNLKKPN 137
EL+ QA DNCLNLKKP+
Sbjct: 121 ELYRQATDNCLNLKKPD 137
>gi|294463563|gb|ADE77310.1| unknown [Picea sitchensis]
Length = 137
Score = 194 bits (492), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 96/137 (70%), Positives = 113/137 (82%)
Query: 1 MDIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAANFAEQPKLMS 60
MDIISQLQEQ+N IAG+ FNT GTLQRDAP VRLSPNYPEP + ED A AEQPK M+
Sbjct: 1 MDIISQLQEQVNVIAGVTFNTIGTLQRDAPAVRLSPNYPEPQSTSAEDPAIVAEQPKAMT 60
Query: 61 AALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQ 120
+LV+ AKQFDALV ALPL+EGGEE QL +IA+LQ+EN+AVG++LQ+++EAAE E KQ Q
Sbjct: 61 TSLVQEAKQFDALVDALPLSEGGEELQLMQIAQLQAENEAVGKELQKEIEAAELEFKQRQ 120
Query: 121 ELFSQAADNCLNLKKPN 137
ELF ADNCLN+K PN
Sbjct: 121 ELFDMIADNCLNMKPPN 137
>gi|357144598|ref|XP_003573349.1| PREDICTED: mediator of RNA polymerase II transcription subunit
21-like [Brachypodium distachyon]
Length = 163
Score = 162 bits (409), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 93/165 (56%), Positives = 117/165 (70%), Gaps = 30/165 (18%)
Query: 1 MDIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEP-PANPT-EDAA-------- 50
MDIISQLQEQ+N++A +A NTFGTLQRDAPPVRLS +YP+P NP+ ED A
Sbjct: 1 MDIISQLQEQLNEMAMVAVNTFGTLQRDAPPVRLSTSYPDPLNPNPSPEDPAAPAPGAAA 60
Query: 51 ------------------NFAEQPKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIA 92
+ AEQPK MS ALV AAK+FDALVAALPL+ E+ Q+KRI
Sbjct: 61 ASPAPAVPAPPPQPQPALDLAEQPKAMSHALVLAAKKFDALVAALPLS--SEDDQMKRIE 118
Query: 93 ELQSENDAVGQDLQRQLEAAEKELKQVQELFSQAADNCLNLKKPN 137
ELQ+EN+ +G +LQ+QLEAAE EL++V+ LF++A DNC+NLKKP+
Sbjct: 119 ELQAENEVLGLELQKQLEAAELELRRVETLFNEATDNCINLKKPD 163
>gi|4115933|gb|AAD03443.1| contains similarity to human RNA polymerase II complex component
SRB7 (GB:U52960) [Arabidopsis thaliana]
Length = 168
Score = 159 bits (402), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 90/124 (72%), Positives = 96/124 (77%), Gaps = 11/124 (8%)
Query: 1 MDIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAAN--FAEQPKL 58
MDIISQLQEQ+N IA I FN FGTLQRDAPPV+LSPNYPEPPA T F EQPK
Sbjct: 1 MDIISQLQEQVNTIAAITFNAFGTLQRDAPPVQLSPNYPEPPATTTVTDDATPFPEQPKQ 60
Query: 59 MSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQ---------SENDAVGQDLQRQL 109
+SA LVKAAKQFDALVAALPL+EGGE AQLKRIAELQ END VGQ+LQ+QL
Sbjct: 61 LSAGLVKAAKQFDALVAALPLSEGGEGAQLKRIAELQVKQVTPICRVENDLVGQELQKQL 120
Query: 110 EAAE 113
EAAE
Sbjct: 121 EAAE 124
>gi|168022533|ref|XP_001763794.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685038|gb|EDQ71436.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 132
Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 82/136 (60%), Positives = 103/136 (75%), Gaps = 4/136 (2%)
Query: 1 MDIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAANFAEQPKLMS 60
MDII+QLQE + IA IAFN GT+QRDAPP +L+ +YP+P TE EQPK M+
Sbjct: 1 MDIIAQLQEHASAIAYIAFNAAGTIQRDAPPSQLAQDYPKPTGITTEAL----EQPKEMA 56
Query: 61 AALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQ 120
A V+A ++FDALV+ALP +GGEEAQLKRIAEL++EN+A GQ+LQR+LEAA+ EL Q+Q
Sbjct: 57 TAFVQAVQRFDALVSALPDIQGGEEAQLKRIAELEAENEAFGQELQRELEAADSELNQIQ 116
Query: 121 ELFSQAADNCLNLKKP 136
ELF A DN L +K P
Sbjct: 117 ELFDMATDNWLQMKPP 132
>gi|242080485|ref|XP_002445011.1| hypothetical protein SORBIDRAFT_07g002720 [Sorghum bicolor]
gi|18481706|gb|AAL73528.1|AF466200_7 putative RNA polymerase II complex component SRB7 [Sorghum bicolor]
gi|241941361|gb|EES14506.1| hypothetical protein SORBIDRAFT_07g002720 [Sorghum bicolor]
Length = 159
Score = 155 bits (391), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 87/159 (54%), Positives = 112/159 (70%), Gaps = 26/159 (16%)
Query: 1 MDIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEP--PANPTEDAA-------- 50
MDII+QLQ+Q++++A +A NTFGTLQRDAPP RLS +YP+P P ED +
Sbjct: 1 MDIITQLQDQLDEMAVLAVNTFGTLQRDAPPDRLSNSYPDPLNPNPKPEDVSTKPQVQGQ 60
Query: 51 --------------NFAEQPKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQS 96
+ +EQPK MS ALV AAK+FDALVAALPL+ EE Q+KRI ELQ+
Sbjct: 61 PGAPPPAQAQPPAPDLSEQPKAMSHALVLAAKKFDALVAALPLS--SEEDQVKRIQELQA 118
Query: 97 ENDAVGQDLQRQLEAAEKELKQVQELFSQAADNCLNLKK 135
EN+ VG +LQ+QLEAAE+ELKQV+ LF++A DNC+N K+
Sbjct: 119 ENEVVGLELQKQLEAAERELKQVEVLFNEATDNCINFKR 157
>gi|125560061|gb|EAZ05509.1| hypothetical protein OsI_27725 [Oryza sativa Indica Group]
Length = 172
Score = 154 bits (390), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 92/173 (53%), Positives = 110/173 (63%), Gaps = 39/173 (22%)
Query: 1 MDIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAA---------- 50
MDIISQLQEQ+N++A +A NTFGTLQRDAPPVRLS NYP+P A
Sbjct: 1 MDIISQLQEQLNEMAMVAVNTFGTLQRDAPPVRLSNNYPDPLNPAAAAANPNPDDPAQPQ 60
Query: 51 ---------------------------NFAEQPKLMSAALVKAAKQFDALVAALPLAEGG 83
+ AE PK MS ALV AAK+FDALV+ALPL+
Sbjct: 61 PGAAAAAPGAPAAQAQAPPAQAQPPALDLAEHPKAMSHALVLAAKKFDALVSALPLS--S 118
Query: 84 EEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQELFSQAADNCLNLKKP 136
EE QLKRI ELQ+EN+ VG +LQ+QLEAAE ELKQV+ LF++A D+C+NLKKP
Sbjct: 119 EEDQLKRIKELQAENEVVGSELQKQLEAAELELKQVEALFNEATDHCINLKKP 171
>gi|38636817|dbj|BAD03057.1| RNA polymerase II complex component SRB7 protein-like [Oryza sativa
Japonica Group]
gi|46390799|dbj|BAD16305.1| RNA polymerase II complex component SRB7 protein-like [Oryza sativa
Japonica Group]
Length = 236
Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/175 (53%), Positives = 111/175 (63%), Gaps = 41/175 (23%)
Query: 1 MDIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAA---------- 50
MDIISQLQEQ+N++A +A NTFGTLQRDAPPVRLS NYP+P AA
Sbjct: 63 MDIISQLQEQLNEMAMVAVNTFGTLQRDAPPVRLSNNYPDPLNPAAAAAANPNPDDPAQP 122
Query: 51 -----------------------------NFAEQPKLMSAALVKAAKQFDALVAALPLAE 81
+ AE PK MS ALV AAK+FDALV+ALPL+
Sbjct: 123 QPGAAAAAAAGAPAAQAQAPPAQAQPPALDLAEHPKAMSHALVLAAKKFDALVSALPLS- 181
Query: 82 GGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQELFSQAADNCLNLKKP 136
EE QLKRI ELQ+EN+ VG +LQ+QLEAAE ELKQV+ LF++A D+C+NLKKP
Sbjct: 182 -SEEDQLKRIKELQAENEVVGTELQKQLEAAELELKQVEALFNEATDHCINLKKP 235
>gi|326504002|dbj|BAK02787.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 185
Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 90/166 (54%), Positives = 109/166 (65%), Gaps = 31/166 (18%)
Query: 1 MDIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAA---------- 50
MDIISQLQEQ+N+IA ++ NTFGTLQRDAPPVRLS +YP+P
Sbjct: 22 MDIISQLQEQLNEIAMVSVNTFGTLQRDAPPVRLSNSYPDPLNPNPNPDGPASQPQAPPA 81
Query: 51 -------------------NFAEQPKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRI 91
+ EQPK MS ALV AAK+FDALVAALPL+ EE QLKRI
Sbjct: 82 PGAPPPAPLPPQAQPQPALDLDEQPKAMSHALVLAAKKFDALVAALPLS--SEEDQLKRI 139
Query: 92 AELQSENDAVGQDLQRQLEAAEKELKQVQELFSQAADNCLNLKKPN 137
ELQ+EN+ VG +LQ+QLEAAE EL +V+ LF++A DNC+NLKKP+
Sbjct: 140 QELQAENEVVGLELQKQLEAAELELHRVEVLFNEATDNCINLKKPD 185
>gi|413921347|gb|AFW61279.1| hypothetical protein ZEAMMB73_150593 [Zea mays]
Length = 164
Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 86/164 (52%), Positives = 111/164 (67%), Gaps = 31/164 (18%)
Query: 1 MDIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEP---PANPTEDA-------- 49
MDII+QLQ+Q++++A +A NTFGTLQRDAPP RLS +YP+P P +D+
Sbjct: 1 MDIITQLQDQLDEMAVLAVNTFGTLQRDAPPDRLSSSYPDPLNPNPKPEDDSKPQVQAQP 60
Query: 50 ------------------ANFAEQPKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRI 91
+ EQPK MS ALV AAK+FDALVAA+PL+ EE Q+KRI
Sbjct: 61 GAPPPPPAQAQAQAQPPAPDLTEQPKAMSRALVLAAKKFDALVAAVPLS--SEEDQVKRI 118
Query: 92 AELQSENDAVGQDLQRQLEAAEKELKQVQELFSQAADNCLNLKK 135
ELQ+EN+ VG +LQ+QLEAAE+ELKQV+ LF++A DNC+N KK
Sbjct: 119 QELQAENEVVGLELQKQLEAAERELKQVEVLFNEATDNCINFKK 162
>gi|222639872|gb|EEE68004.1| hypothetical protein OsJ_25959 [Oryza sativa Japonica Group]
Length = 471
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 93/175 (53%), Positives = 111/175 (63%), Gaps = 41/175 (23%)
Query: 1 MDIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAA---------- 50
MDIISQLQEQ+N++A +A NTFGTLQRDAPPVRLS NYP+P AA
Sbjct: 298 MDIISQLQEQLNEMAMVAVNTFGTLQRDAPPVRLSNNYPDPLNPAAAAAANPNPDDPAQP 357
Query: 51 -----------------------------NFAEQPKLMSAALVKAAKQFDALVAALPLAE 81
+ AE PK MS ALV AAK+FDALV+ALPL+
Sbjct: 358 QPGAAAAAAAGAPAAQAQAPPAQAQPPALDLAEHPKAMSHALVLAAKKFDALVSALPLSS 417
Query: 82 GGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQELFSQAADNCLNLKKP 136
EE QLKRI ELQ+EN+ VG +LQ+QLEAAE ELKQV+ LF++A D+C+NLKKP
Sbjct: 418 --EEDQLKRIKELQAENEVVGTELQKQLEAAELELKQVEALFNEATDHCINLKKP 470
>gi|388518403|gb|AFK47263.1| unknown [Lotus japonicus]
Length = 81
Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 69/79 (87%), Positives = 76/79 (96%)
Query: 59 MSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQ 118
MS LVKAAKQFDALVAALP+AEGGEEAQLKRIAELQ+ENDA+GQ+LQ+QLEAAEKEL Q
Sbjct: 1 MSTGLVKAAKQFDALVAALPIAEGGEEAQLKRIAELQAENDAIGQELQKQLEAAEKELHQ 60
Query: 119 VQELFSQAADNCLNLKKPN 137
VQELFSQA+DNCLNLKKP+
Sbjct: 61 VQELFSQASDNCLNLKKPD 79
>gi|325260833|gb|ADZ04651.1| hypothetical protein [Oryza punctata]
Length = 157
Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 80/158 (50%), Positives = 96/158 (60%), Gaps = 37/158 (23%)
Query: 14 IAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAA----------------------- 50
+A +A NTFGTLQRDAPPVRLS NYP+P
Sbjct: 1 MAMVAVNTFGTLQRDAPPVRLSNNYPDPLNPAAAANPNPDDPAQPQPGAAAAAAGAPAAQ 60
Query: 51 ------------NFAEQPKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSEN 98
+ AE PK MS ALV AAK+FDALV+ALPL+ EE QLKRI ELQ+EN
Sbjct: 61 AQAPPAQAPPALDLAEHPKAMSHALVLAAKKFDALVSALPLS--SEEDQLKRIKELQAEN 118
Query: 99 DAVGQDLQRQLEAAEKELKQVQELFSQAADNCLNLKKP 136
+ VG +LQ+QLEAAE ELKQV+ LF++A D+C+NLKKP
Sbjct: 119 EVVGSELQKQLEAAELELKQVEALFNEATDHCINLKKP 156
>gi|325260816|gb|ADZ04635.1| hypothetical protein [Oryza glaberrima]
Length = 159
Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 81/160 (50%), Positives = 97/160 (60%), Gaps = 39/160 (24%)
Query: 14 IAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAA----------------------- 50
+A +A NTFGTLQRDAPPVRLS NYP+P A
Sbjct: 1 MAMVAVNTFGTLQRDAPPVRLSNNYPDPLNPAAAAANPNPDDPAQPQPGAAAAAPGAPAA 60
Query: 51 --------------NFAEQPKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQS 96
+ AE PK MS ALV AAK+FDALV+ALPL+ EE QLKRI ELQ+
Sbjct: 61 QAQAPPAQAQPPALDLAEHPKAMSHALVLAAKKFDALVSALPLS--SEEDQLKRIKELQA 118
Query: 97 ENDAVGQDLQRQLEAAEKELKQVQELFSQAADNCLNLKKP 136
EN+ VG +LQ+QLEAAE ELKQV+ LF++A D+C+NLKKP
Sbjct: 119 ENEVVGSELQKQLEAAELELKQVEALFNEATDHCINLKKP 158
>gi|302796529|ref|XP_002980026.1| hypothetical protein SELMODRAFT_111729 [Selaginella moellendorffii]
gi|302822547|ref|XP_002992931.1| hypothetical protein SELMODRAFT_136226 [Selaginella moellendorffii]
gi|300139276|gb|EFJ06020.1| hypothetical protein SELMODRAFT_136226 [Selaginella moellendorffii]
gi|300152253|gb|EFJ18896.1| hypothetical protein SELMODRAFT_111729 [Selaginella moellendorffii]
Length = 157
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 85/155 (54%), Positives = 111/155 (71%), Gaps = 20/155 (12%)
Query: 1 MDIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEP----PANP----------- 45
MDII+QLQ+Q+N+IA +AFN+ G+LQRDA PVRLS NYP+P P P
Sbjct: 1 MDIITQLQDQVNKIAFLAFNSVGSLQRDAAPVRLSQNYPDPQALAPGAPPLPGQQQQQQQ 60
Query: 46 ----TEDAANFAEQPKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAEL-QSENDA 100
++ EQ M++ LV+AAKQFDALVAALP+AEGGEEAQLKRIAEL Q+EN+
Sbjct: 61 QAQQSQQPQQQQEQAPEMASTLVQAAKQFDALVAALPIAEGGEEAQLKRIAELQQAENEE 120
Query: 101 VGQDLQRQLEAAEKELKQVQELFSQAADNCLNLKK 135
+G++LQ +L+ AE+ELK ++ELF AAD+CL K+
Sbjct: 121 IGKELQLELDLAEEELKLMRELFHTAADDCLRFKQ 155
>gi|356574269|ref|XP_003555272.1| PREDICTED: LOW QUALITY PROTEIN: mediator of RNA polymerase II
transcription subunit 21-like [Glycine max]
Length = 98
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/70 (77%), Positives = 63/70 (90%)
Query: 68 KQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQELFSQAA 127
K FDALVAALP++ GEEAQLKRI+ELQ+ENDA+GQ+LQ+QLEAAEKEL VQEL QA+
Sbjct: 27 KPFDALVAALPISVSGEEAQLKRISELQAENDAIGQELQKQLEAAEKELNXVQELSRQAS 86
Query: 128 DNCLNLKKPN 137
DNCLNLKKP+
Sbjct: 87 DNCLNLKKPD 96
>gi|326499003|dbj|BAK05992.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 181
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/127 (50%), Positives = 74/127 (58%), Gaps = 31/127 (24%)
Query: 1 MDIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAA---------- 50
MDIISQLQEQ+N+IA ++ NTFGTLQRDAPPVRLS +YP+P
Sbjct: 1 MDIISQLQEQLNEIAMVSVNTFGTLQRDAPPVRLSNSYPDPLNPNPNPDGPASQPQAPPA 60
Query: 51 -------------------NFAEQPKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRI 91
+ EQPK MS ALV AAK+FDALVAALPL+ EE QLKRI
Sbjct: 61 PGAPPPAPLPPQAQPQPALDLDEQPKAMSHALVLAAKKFDALVAALPLSS--EEDQLKRI 118
Query: 92 AELQSEN 98
ELQ+
Sbjct: 119 QELQAST 125
>gi|412986506|emb|CCO14932.1| MED21 (MEDIATOR 21) [Bathycoccus prasinos]
Length = 164
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 81/141 (57%), Gaps = 9/141 (6%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVR-------LSPNYPEPPANPTEDAAN--F 52
D ++QLQ+Q+N +A + FN+ GTLQRDA P LS + P P ++
Sbjct: 3 DTVTQLQDQVNHMAMLMFNSIGTLQRDALPAERLNTTNALSDSIPPQIEIPNQNIKKGVT 62
Query: 53 AEQPKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAA 112
EQ + M+ LV+++K D L LP AEG QLKRI ELQ E++ + ++L ++LE A
Sbjct: 63 KEQIEEMTKQLVESSKVIDMLAEQLPDAEGTPAEQLKRIEELQEEHEKISKELNKELEKA 122
Query: 113 EKELKQVQELFSQAADNCLNL 133
+++L +V F Q AD L L
Sbjct: 123 KEKLDKVNAEFEQLADAELKL 143
>gi|297607937|ref|NP_001060943.2| Os08g0135600 [Oryza sativa Japonica Group]
gi|255678131|dbj|BAF22857.2| Os08g0135600 [Oryza sativa Japonica Group]
Length = 69
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/68 (67%), Positives = 57/68 (83%), Gaps = 3/68 (4%)
Query: 70 FDALVAALPLAEGGEEAQLKRIAELQ-SENDAVGQDLQRQLEAAEKELKQVQELFSQAAD 128
FDALV+ALPL+ EE QLKRI ELQ +EN+ VG +LQ+QLEAAE ELKQV+ LF++A D
Sbjct: 3 FDALVSALPLS--SEEDQLKRIKELQQAENEVVGTELQKQLEAAELELKQVEALFNEATD 60
Query: 129 NCLNLKKP 136
+C+NLKKP
Sbjct: 61 HCINLKKP 68
>gi|255085716|ref|XP_002505289.1| predicted protein [Micromonas sp. RCC299]
gi|226520558|gb|ACO66547.1| predicted protein [Micromonas sp. RCC299]
Length = 143
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 78/130 (60%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAANFAEQPKLMSA 61
DI++QLQ+ +N++ G+ +N G LQRDA P + + P + +Q K M+A
Sbjct: 3 DIVTQLQDSVNELNGMFYNCVGVLQRDAKPAGTTADGELSDELPDDGREASEKQIKEMAA 62
Query: 62 ALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQE 121
A+V+ +++ D L + LP + E AQL RIA+LQ+END + ++L R+LEA+EK L +
Sbjct: 63 AVVQQSRKIDELASLLPEVDLDEHAQLGRIAKLQAENDELDRELARELEASEKILAKATA 122
Query: 122 LFSQAADNCL 131
F A D L
Sbjct: 123 AFEAATDKVL 132
>gi|145354057|ref|XP_001421312.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581549|gb|ABO99605.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 138
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 70/132 (53%), Gaps = 2/132 (1%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAANFAEQPKLMSA 61
D ++QLQ QIN + + FN GTLQRDA P + PN E TE AE + M+A
Sbjct: 3 DSVTQLQNQINTLCQLMFNYAGTLQRDAKPATIGPN-GELNDALTEGGVTRAEIDE-MAA 60
Query: 62 ALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQE 121
+ +A + + ALP + E+A KRIA L +E+D V ++L+ + A+ EL +
Sbjct: 61 TIAEANRVIMEIARALPEIDTDEKAARKRIAALHAEHDKVSKELETVIAQAKAELDVINA 120
Query: 122 LFSQAADNCLNL 133
F AA L L
Sbjct: 121 AFKAAASGVLAL 132
>gi|303282073|ref|XP_003060328.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457799|gb|EEH55097.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 138
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 75/130 (57%), Gaps = 7/130 (5%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAANFAEQPKLMSA 61
DI+++LQE ++++ +N+ G LQRDA P + A+P+E Q + M+
Sbjct: 3 DIVTELQESVDRLNEAFYNSVGVLQRDAKPASVVEG-----ADPSEGVDEA--QVREMAR 55
Query: 62 ALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQE 121
+++ +++ D L +ALP + +AQL RIA+L E+ A+G++L+ +L A+K L +V
Sbjct: 56 SVMDESRKIDELASALPPVDLDADAQLARIAKLAEEDHALGEELRAELTRAKKTLTKVTA 115
Query: 122 LFSQAADNCL 131
F D+ L
Sbjct: 116 AFEAVTDDIL 125
>gi|328768462|gb|EGF78508.1| hypothetical protein BATDEDRAFT_26581 [Batrachochytrium
dendrobatidis JAM81]
Length = 145
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 69/136 (50%), Gaps = 3/136 (2%)
Query: 1 MDIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAANFAEQPKLMS 60
MD ++QLQE + ++ I F + G LQRDAP + +P+ P + N+ L
Sbjct: 1 MDRLTQLQECLGKLTEIFFTSTGVLQRDAPLMSTNPDLPITSWKSEQIETNWLANKDLAK 60
Query: 61 AA---LVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELK 117
A +V+ AK D L+ LP EE Q++ + L+ EN G ++++ +E AEK
Sbjct: 61 TAAKDIVETAKVIDFLIDQLPGISENEEEQIRILGALEEENRIAGIEMEQAIEEAEKLRG 120
Query: 118 QVQELFSQAADNCLNL 133
++Q + AD +L
Sbjct: 121 EIQTSLRRIADEHTDL 136
>gi|308812083|ref|XP_003083349.1| RNA polymerase II holoenzyme and mediator subcomplex, subunit
SURB7/SRB7 (ISS) [Ostreococcus tauri]
gi|116055229|emb|CAL57625.1| RNA polymerase II holoenzyme and mediator subcomplex, subunit
SURB7/SRB7 (ISS) [Ostreococcus tauri]
Length = 138
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 4/134 (2%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDA----ANFAEQPK 57
D +SQLQ QIN + + FN GTLQRDA PVR N +DA + +
Sbjct: 3 DAVSQLQCQINTLCELMFNYAGTLQRDARPVRERTNASSTANGDLDDALPEGGITKAELE 62
Query: 58 LMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELK 117
M+ + +A + + ALP + E A KR+A L +E++ V ++L A +EL+
Sbjct: 63 AMAGTIAEARRVIVEIARALPEMDTDENASRKRLAALHAEHEKVSKELDIATAEAREELE 122
Query: 118 QVQELFSQAADNCL 131
+ F +A++ L
Sbjct: 123 IINAAFKKASEATL 136
>gi|66565601|ref|XP_396033.2| PREDICTED: mediator of RNA polymerase II transcription subunit 21
[Apis mellifera]
Length = 175
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 7/136 (5%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEP-PANPTEDAANFAEQPKLMS 60
D ++QLQ+ INQ A N+ G LQ+ + P + P P P ED A L +
Sbjct: 3 DRLTQLQDTINQQAEHFCNSVGILQQYSIPSKFVDRVGTPQPHQPQEDYA------ALFA 56
Query: 61 AALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQ 120
+ + AK D L+ +LP E +E Q+ ++ L+ EN G+ L+ ++ E L+++Q
Sbjct: 57 TLIARCAKDIDTLIESLPSEESSQELQVASLSRLEQENQEAGEQLEEVVKQGEALLQRIQ 116
Query: 121 ELFSQAADNCLNLKKP 136
A + L+++ P
Sbjct: 117 AALQDIAQSQLDMQDP 132
>gi|380013044|ref|XP_003690580.1| PREDICTED: mediator of RNA polymerase II transcription subunit
21-like [Apis florea]
Length = 175
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 7/136 (5%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEP-PANPTEDAANFAEQPKLMS 60
D ++QLQ+ INQ A N+ G LQ+ + P + P P P ED A L +
Sbjct: 3 DRLTQLQDTINQQAEHFCNSVGILQQYSIPSKFVDRVGTPQPHQPQEDYA------ALFA 56
Query: 61 AALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQ 120
+ + AK D L+ +LP E +E Q+ ++ L+ EN G+ L+ ++ E L+++Q
Sbjct: 57 TLIARCAKDIDTLIESLPSEESSQELQVASLSRLEQENQEAGEQLEEVVKQGEALLQRIQ 116
Query: 121 ELFSQAADNCLNLKKP 136
A + L+++ P
Sbjct: 117 AALQDIAQSQLDMQDP 132
>gi|307106285|gb|EFN54531.1| hypothetical protein CHLNCDRAFT_135280 [Chlorella variabilis]
Length = 149
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 12/140 (8%)
Query: 1 MDIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAA----NFAEQP 56
+D++S LQE I ++ + FN G LQRDAPP +P AA + Q
Sbjct: 6 VDLVSSLQEAIGRLNAMLFNYLGALQRDAPP--------QPVKGEALVAAPKTYDVLAQT 57
Query: 57 KLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKEL 116
+LM++ L+ K + L+ LP G E ++ + L +N Q+LQ++L AA +L
Sbjct: 58 ELMASDLMAGLKDVEGLIQQLPELSGSEAEEVAQAVALLQQNAEASQELQQELVAASAKL 117
Query: 117 KQVQELFSQAADNCLNLKKP 136
Q+Q+ A+ L + P
Sbjct: 118 AQLQDAHGVLAEAALRHRPP 137
>gi|91085453|ref|XP_969413.1| PREDICTED: similar to Srb7p: RNA polymerase II holoenzyme
component, putative [Tribolium castaneum]
gi|270008396|gb|EFA04844.1| hypothetical protein TcasGA2_TC014894 [Tribolium castaneum]
Length = 143
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 69/129 (53%), Gaps = 12/129 (9%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAANFAEQPKLMSA 61
D ++QLQ+ INQ A N+ G LQ+ APP + PN+ + + T N + +L +
Sbjct: 3 DRLTQLQDCINQQAEHFCNSIGILQQFAPPSKF-PNF-DRSGSQTPQQQNQEDYVQLFTT 60
Query: 62 ALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSEN-------DAV---GQDLQRQLEA 111
+ + AK D L+ +LP E E QL+ + L+S+N +A+ GQDL Q++A
Sbjct: 61 LIARCAKDIDTLIESLPSEENSTELQLQSLRILESDNQESAERLEAIVRKGQDLLEQIQA 120
Query: 112 AEKELKQVQ 120
A ++ Q Q
Sbjct: 121 ALSDIAQSQ 129
>gi|350407976|ref|XP_003488259.1| PREDICTED: mediator of RNA polymerase II transcription subunit
21-like [Bombus impatiens]
Length = 179
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 69/139 (49%), Gaps = 11/139 (7%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPE----PPANPTEDAANFAEQPK 57
D ++QLQ+ INQ A N+ G LQ+ + P + P + P P ED A
Sbjct: 3 DRLTQLQDTINQQAEHFCNSVGILQQYSTPSKF-PGFDRVGTPQPHQPQEDYA------A 55
Query: 58 LMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELK 117
L + + + AK D L+ +LP E +E Q+ ++ L+ EN G+ L+ ++ E L+
Sbjct: 56 LFATLIARCAKDIDTLIESLPSEESSQELQVASLSRLEQENQEAGEQLEEVVKQGEALLQ 115
Query: 118 QVQELFSQAADNCLNLKKP 136
++Q A + L+++ P
Sbjct: 116 RIQAALQDIAQSQLDMQDP 134
>gi|383849248|ref|XP_003700257.1| PREDICTED: mediator of RNA polymerase II transcription subunit
21-like [Megachile rotundata]
Length = 179
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 69/139 (49%), Gaps = 11/139 (7%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPE----PPANPTEDAANFAEQPK 57
D ++QLQ+ INQ A N+ G LQ+ + P + P + P P ED A
Sbjct: 3 DRLTQLQDTINQQAEHFCNSVGILQQYSTPSKF-PGFDRVGTPQPHQPQEDYA------A 55
Query: 58 LMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELK 117
L + + + AK D L+ +LP E +E Q+ ++ L+ EN G+ L+ ++ E L+
Sbjct: 56 LFATLIARCAKDIDTLIESLPSEESSQELQVASLSRLEQENQEAGEQLEEVVKQGEALLQ 115
Query: 118 QVQELFSQAADNCLNLKKP 136
++Q A + L+++ P
Sbjct: 116 RIQAALQDIAQSQLDMQDP 134
>gi|328864891|gb|EGG13277.1| putative mediator complex subunit 21 [Dictyostelium fasciculatum]
Length = 136
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 58/110 (52%), Gaps = 4/110 (3%)
Query: 1 MDIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTE----DAANFAEQP 56
MD+++QLQ++++ + + G LQRDAPP S P T+ +A N+ Q
Sbjct: 1 MDLLTQLQDKLDHLFLVFGTCIGVLQRDAPPSSFSEVMNNQPPQLTQEQLTNADNWNSQT 60
Query: 57 KLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQ 106
K M+ +++ K ++++ +LP + E Q +R+ L E+ + Q LQ
Sbjct: 61 KHMALQVIETTKLIESIIESLPGFQRTENEQYQRLKALNHESKLLQQQLQ 110
>gi|156402193|ref|XP_001639475.1| predicted protein [Nematostella vectensis]
gi|156226604|gb|EDO47412.1| predicted protein [Nematostella vectensis]
Length = 139
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 10/132 (7%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNY-----PEPPANPTEDAANFAEQP 56
D I+QLQ+ +NQ+A N+ G LQ+ A P + P + P+ +NP+ NF
Sbjct: 3 DRITQLQDALNQLADQFCNSVGILQQTAEPGQF-PGFDKGTNPKLSSNPS----NFEGHG 57
Query: 57 KLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKEL 116
L + + + AK D L+ +LP E E Q + L++EN G+ L+ + EK L
Sbjct: 58 ALFATLIARTAKDIDYLIDSLPSEECSPELQAASLQRLEAENQEAGRKLEEVVRKGEKLL 117
Query: 117 KQVQELFSQAAD 128
+Q+ ++ A+
Sbjct: 118 ALIQQALNEIAE 129
>gi|340721808|ref|XP_003399306.1| PREDICTED: mediator of RNA polymerase II transcription subunit
21-like [Bombus terrestris]
Length = 179
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 11/139 (7%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPE----PPANPTEDAANFAEQPK 57
D ++QLQ+ INQ A N+ G LQ+ + P + P + P P ED A
Sbjct: 3 DRLTQLQDTINQQAEHFCNSVGILQQYSTPSKF-PGFDRVGTPQPHQPQEDYA------A 55
Query: 58 LMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELK 117
L + + + AK D L+ +LP E +E Q+ + L+ EN G+ L+ ++ E L+
Sbjct: 56 LFATLIARCAKDIDTLIESLPSEESSQELQVASLNRLEQENQEAGEQLEEVVKQGEALLQ 115
Query: 118 QVQELFSQAADNCLNLKKP 136
++Q A + L+++ P
Sbjct: 116 RIQAALQDIAQSQLDMQDP 134
>gi|332016391|gb|EGI57304.1| Mediator of RNA polymerase II transcription subunit 21 [Acromyrmex
echinatior]
Length = 178
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 13/140 (9%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNY-----PEPPANPTEDAANFAEQP 56
D ++QLQ+ INQ A N+ G LQ+ + P + P + P+P + + AA FA
Sbjct: 3 DRLTQLQDTINQQAEHFCNSVGILQQYSTPSKF-PGFDRIGTPQPHQSQEDYAALFAN-- 59
Query: 57 KLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKEL 116
+ + AK D L+ +LP E +E Q+ ++ L+ EN G+ L+ + E L
Sbjct: 60 -----LIARCAKDIDTLIESLPSEESSQELQVASLSRLEQENQQAGEQLEEVVRQGETLL 114
Query: 117 KQVQELFSQAADNCLNLKKP 136
+++Q A + L+++ P
Sbjct: 115 QRIQAALQDIAQSQLDMQNP 134
>gi|322792066|gb|EFZ16158.1| hypothetical protein SINV_06910 [Solenopsis invicta]
Length = 178
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 13/140 (9%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNY-----PEPPANPTEDAANFAEQP 56
D ++QLQ+ INQ A N+ G LQ+ + P + P + P+P + + AA FA
Sbjct: 3 DRLTQLQDTINQQAEHFCNSVGILQQYSTPSKF-PGFDRIGTPQPHQSQEDYAALFAN-- 59
Query: 57 KLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKEL 116
+ + AK D L+ +LP E +E Q+ ++ L+ EN G+ L+ + E L
Sbjct: 60 -----LIARCAKDIDTLIESLPSEESSQELQVASLSRLEQENQQAGEQLEEVVRQGEALL 114
Query: 117 KQVQELFSQAADNCLNLKKP 136
+++Q A + L+++ P
Sbjct: 115 QRIQAALQDIAQSQLDMQNP 134
>gi|156543346|ref|XP_001607813.1| PREDICTED: mediator of RNA polymerase II transcription subunit
21-like [Nasonia vitripennis]
Length = 183
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 68/137 (49%), Gaps = 6/137 (4%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPE--PPANPTEDAANFAEQPKLM 59
D ++QLQ+ INQ A N+ G LQ+ + P + P + P P + ++A L
Sbjct: 3 DRLTQLQDTINQQAEYFCNSVGILQQYSTPSKF-PGFDRISTPQQPNQSQEDYA---ALF 58
Query: 60 SAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQV 119
+ + + AK D L+ +LP E +E Q+ ++ L+ EN + L+ + E L+++
Sbjct: 59 ATLIARCAKDIDTLIDSLPSEESSQELQVASLSRLEQENQEAAEQLEDVVRQGEALLQRI 118
Query: 120 QELFSQAADNCLNLKKP 136
Q A + L+++ P
Sbjct: 119 QAALQDIAQSQLDMQNP 135
>gi|357618080|gb|EHJ71174.1| putative Srb7pRNA polymerase II holoenzyme component [Danaus
plexippus]
Length = 148
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 67/135 (49%), Gaps = 1/135 (0%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAANFAEQPKLMSA 61
D ++QLQ+ INQ A N+ G LQ+ + P + P + + + N + L +
Sbjct: 3 DRLTQLQDTINQQAEHFCNSIGVLQQFSSPSKF-PGFDRSGSQTPQQQQNQEDYAMLFAT 61
Query: 62 ALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQE 121
+ + AK D L+ +LP E E Q++ + L++EN + L+ + E L+++Q
Sbjct: 62 LISRCAKDIDTLIESLPSEESSTELQVQSLKRLEAENKEAAEQLEEVVRQGEILLEKIQG 121
Query: 122 LFSQAADNCLNLKKP 136
S A + L+++ P
Sbjct: 122 ALSDIAQSQLDMQNP 136
>gi|307195484|gb|EFN77370.1| Mediator of RNA polymerase II transcription subunit 21
[Harpegnathos saltator]
Length = 181
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 68/140 (48%), Gaps = 13/140 (9%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNY-----PEPPANPTEDAANFAEQP 56
D ++QLQ+ INQ A N+ G LQ+ + P + P + P+P + AA FA
Sbjct: 3 DRLTQLQDTINQQAEHFCNSVGILQQYSTPSKF-PGFDRIGTPQPHQTQEDYAALFA--- 58
Query: 57 KLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKEL 116
+ + AK D L+ +LP E +E Q+ + L+ EN G+ L+ + E L
Sbjct: 59 ----TLISRCAKDIDTLIESLPSEESSQELQVASLNRLEQENQEAGEQLEEIVRQGEALL 114
Query: 117 KQVQELFSQAADNCLNLKKP 136
+++Q A + L+++ P
Sbjct: 115 QRIQAALQDIAQSQLDMQNP 134
>gi|332373928|gb|AEE62105.1| unknown [Dendroctonus ponderosae]
Length = 144
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 70/138 (50%), Gaps = 10/138 (7%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNY----PEPPANPTEDAANFAEQPK 57
D ++QLQ+ INQ A N+ G LQ+ APP + PN+ + P T++ + +
Sbjct: 3 DRLTQLQDCINQQAEHFCNSIGILQQFAPPSKF-PNFDRSGSQTPQQQTQE-----DYVQ 56
Query: 58 LMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELK 117
L + + + AK D L+ +LP E E+QL + +L+ EN L + + ++ L+
Sbjct: 57 LFTTLISRCAKDIDTLIESLPSEENSTESQLSSLRQLEQENQDAADRLDAIVRSGQELLE 116
Query: 118 QVQELFSQAADNCLNLKK 135
+VQ S A L+++
Sbjct: 117 KVQLALSDIAQAQLDMQH 134
>gi|313223672|emb|CBY42024.1| unnamed protein product [Oikopleura dioica]
gi|313229226|emb|CBY23812.1| unnamed protein product [Oikopleura dioica]
Length = 169
Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 63/141 (44%), Gaps = 8/141 (5%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAANFAEQP----- 56
D +SQLQ+ +N +A N+ G L AP + P DAA F Q
Sbjct: 3 DRLSQLQDFVNDLAIHMCNSIGVLHESAPTSSFD-DAETRTTTPRPDAAEFGAQKTESRR 61
Query: 57 --KLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEK 114
+L S+ + + K D L+ +LP E Q + ++Q+EN A + L+ +E EK
Sbjct: 62 NIELFSSLITRTFKNIDTLIDSLPSEESTSSLQAATLQKIQTENQAEAERLRSFVEKGEK 121
Query: 115 ELKQVQELFSQAADNCLNLKK 135
++Q AD L+ ++
Sbjct: 122 IHDRIQAALDDIADTQLDARR 142
>gi|198434616|ref|XP_002128572.1| PREDICTED: similar to Srb7p: RNA polymerase II holoenzyme component
[Ciona intestinalis]
Length = 164
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 64/129 (49%), Gaps = 9/129 (6%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPP---VRLSPNYPEPPANPTEDAANFAEQPKL 58
D ++QLQ+ +NQ+A N G LQ+ A P L + + PA +D +L
Sbjct: 3 DRLTQLQDAVNQLAEHFCNGVGILQQSAVPGSFAGLEKSGSKEPAVTNDDTI------RL 56
Query: 59 MSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQ 118
S + K AK D L+ +LP E E Q K +A+L+ EN L+ ++ E++L +
Sbjct: 57 FSTLITKTAKDIDVLIDSLPSEESTPELQAKYLAKLEQENQDAAARLRTFVDKGEEQLAE 116
Query: 119 VQELFSQAA 127
+Q+ + A
Sbjct: 117 IQKALVEIA 125
>gi|427783537|gb|JAA57220.1| Putative mediator of rna polymerase ii transcription subunit
[Rhipicephalus pulchellus]
Length = 140
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 68/141 (48%), Gaps = 17/141 (12%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPE-------PPANPTEDAANFAE 54
D ++QLQ+ +N A N+ G LQ+ APP ++PE P P ED
Sbjct: 3 DRLTQLQDAVNAQADNFCNSIGILQQYAPP----SSFPEFEKSVSKPGQQPQEDY----- 53
Query: 55 QPKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEK 114
P+L + + + AK D L+ +LP E E Q + L+ EN + L+ ++ E
Sbjct: 54 -PQLFATLIARTAKDIDVLIDSLPSEEASPELQAANLRRLEVENQEAARRLEEVVQQGEA 112
Query: 115 ELKQVQELFSQAADNCLNLKK 135
L+Q+Q+ A++ L+++
Sbjct: 113 LLEQIQKALHDIAESQLSMQH 133
>gi|432941961|ref|XP_004082924.1| PREDICTED: mediator of RNA polymerase II transcription subunit
21-like [Oryzias latipes]
Length = 145
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 10/138 (7%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLS----PNYPEPPANPTEDAANFAEQPK 57
D ++QLQ+ +N +A N G LQ+ APP S + PANPTE+ A +
Sbjct: 3 DRLTQLQDAVNSLADQFCNAIGVLQQFAPPASFSNIQTAINKDQPANPTEEYA------Q 56
Query: 58 LMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELK 117
L +A + + AK D L+ +LP E Q + +L+ EN L+ + + LK
Sbjct: 57 LFAALIARTAKDVDVLIDSLPSEESTAALQAASLRQLEEENHEAAARLEEVVFRGDMLLK 116
Query: 118 QVQELFSQAADNCLNLKK 135
++Q + A + L +
Sbjct: 117 RIQHALADIAQSQLRTRS 134
>gi|410919125|ref|XP_003973035.1| PREDICTED: mediator of RNA polymerase II transcription subunit
21-like [Takifugu rubripes]
Length = 145
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 10/137 (7%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLS----PNYPEPPANPTEDAANFAEQPK 57
D I+QLQ+ +N +A N G LQ+ APP S + PANPTE E +
Sbjct: 3 DRITQLQDAVNSLADQFCNAIGVLQQCAPPASFSNIQTAINKDQPANPTE------EYAQ 56
Query: 58 LMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELK 117
L + + + AK D L+ +LP E Q + +L+ EN L+ ++ L+
Sbjct: 57 LFATLIARTAKDVDVLIDSLPSEESTSALQAASLRQLEDENHEAAARLEEVVDRGNMLLE 116
Query: 118 QVQELFSQAADNCLNLK 134
++Q + A + L +
Sbjct: 117 KIQSALADIAQSQLRTR 133
>gi|284520884|ref|NP_001085938.2| mediator complex subunit 21 [Xenopus laevis]
Length = 145
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 12/139 (8%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPP-----VRLSPNYPEPPANPTEDAANFAEQP 56
D ++QLQ+ +N +A NT G LQ+ APP ++ S N +PP NPTE+ A
Sbjct: 3 DRLTQLQDALNSLADQFCNTIGVLQQCAPPASFNNIQTSINKEQPP-NPTEEYA------ 55
Query: 57 KLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKEL 116
+L +A + + K + L+ +LP E Q + +L+ EN L+ + + L
Sbjct: 56 QLFAALIARTGKDIEVLIESLPSEESTAALQAASLYQLEEENHGAAARLEEVVYRGDMLL 115
Query: 117 KQVQELFSQAADNCLNLKK 135
++Q + A + L +
Sbjct: 116 DKIQTALADIAQSQLKTRS 134
>gi|72150963|ref|XP_796120.1| PREDICTED: mediator of RNA polymerase II transcription subunit
21-like [Strongylocentrotus purpuratus]
Length = 177
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 65/133 (48%), Gaps = 3/133 (2%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAANFAEQPKLMSA 61
D ++QLQ+ +NQ+A N+ G LQ+ A P + P + + E N + +L +
Sbjct: 3 DRVTQLQDAVNQLAEHMCNSIGVLQQSAQPSKF-PGCEKQASQ--EQQPNHEDYTQLFAQ 59
Query: 62 ALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQE 121
+ + AK D L+ +LP E E Q + L+ +N+ + L +E E L ++QE
Sbjct: 60 LIARTAKDIDVLIDSLPSEESTVELQNASLQRLEEDNEIAAKRLGEVVERGELLLHRIQE 119
Query: 122 LFSQAADNCLNLK 134
++ AD L K
Sbjct: 120 ALAEIADAQLKTK 132
>gi|409078742|gb|EKM79104.1| hypothetical protein AGABI1DRAFT_113726 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 150
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 63/127 (49%), Gaps = 6/127 (4%)
Query: 1 MDIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYP----EPPANPTEDAANFAEQP 56
MD I+QLQ++I QI I NT G L + V++SP P P E A +
Sbjct: 8 MDRITQLQDEIQQILVIMSNTIGYLTTKSNFVQVSPEVPITKQRNPEKYDESEVFEANKR 67
Query: 57 KLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKEL 116
+L+ +VK AKQ D L+ +LP E EEAQ KR+ L+ E ++ + + A
Sbjct: 68 ELVMDLMVK-AKQIDYLINSLPEPE-PEEAQAKRLEVLEEEMQVANEEYVKAVNRARNLH 125
Query: 117 KQVQELF 123
QV E+
Sbjct: 126 SQVSEVL 132
>gi|241610896|ref|XP_002406241.1| mediator of RNA polymerase II transcription subunit, putative
[Ixodes scapularis]
gi|215500787|gb|EEC10281.1| mediator of RNA polymerase II transcription subunit, putative
[Ixodes scapularis]
Length = 139
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 69/135 (51%), Gaps = 5/135 (3%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAANFAEQ-PKLMS 60
D ++QLQ+ +N A N+ G LQ+ A P N+PE + T+ + E P+L +
Sbjct: 3 DRLTQLQDAVNAQADNFCNSIGILQQFAQP----SNFPEFEKSLTKPGQSTQEDYPQLFA 58
Query: 61 AALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQ 120
+ + + AK D L+ +LP E E Q + L+ EN + L+ ++ E L+Q+Q
Sbjct: 59 SLVARTAKDIDVLIDSLPSEEASPELQAANLRRLELENQDAARRLEDVVQQGEALLEQIQ 118
Query: 121 ELFSQAADNCLNLKK 135
+ A++ LN++
Sbjct: 119 QALHDIAESQLNMQH 133
>gi|348536538|ref|XP_003455753.1| PREDICTED: mediator of RNA polymerase II transcription subunit
21-like [Oreochromis niloticus]
Length = 145
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 10/137 (7%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLS----PNYPEPPANPTEDAANFAEQPK 57
D ++QLQ+ +N +A N G LQ+ APP S + PANPTE+ A +
Sbjct: 3 DRLTQLQDAVNSLADQFCNAIGVLQQCAPPASFSNIQTAINKDQPANPTEEYA------Q 56
Query: 58 LMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELK 117
L +A + + AK D L+ +LP E Q + +L+ EN L+ + + L+
Sbjct: 57 LFAALIARTAKDVDVLIDSLPSEESTAALQAASLRQLEEENHEAAARLEEVVYRGDMLLE 116
Query: 118 QVQELFSQAADNCLNLK 134
++Q + A + L +
Sbjct: 117 KIQSALADIAQSQLRTR 133
>gi|426195646|gb|EKV45575.1| hypothetical protein AGABI2DRAFT_193554 [Agaricus bisporus var.
bisporus H97]
Length = 150
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 63/127 (49%), Gaps = 6/127 (4%)
Query: 1 MDIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYP----EPPANPTEDAANFAEQP 56
MD I+QLQ++I QI I NT G L + V++SP P P E A +
Sbjct: 8 MDRITQLQDEIQQILVIMSNTIGYLTTKSNFVQVSPEVPITKQRNPEKYDESEVFEANKR 67
Query: 57 KLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKEL 116
+L+ +VK AKQ D L+ +LP E EEAQ KR+ L+ E ++ + + A
Sbjct: 68 ELVMDLMVK-AKQIDYLINSLPEPE-PEEAQAKRLEVLEEEMQIANEEYVKAVNRARNLH 125
Query: 117 KQVQELF 123
QV E+
Sbjct: 126 SQVSEVL 132
>gi|84370169|ref|NP_001033655.1| mediator of RNA polymerase II transcription subunit 21 [Bos taurus]
gi|426225321|ref|XP_004006815.1| PREDICTED: mediator of RNA polymerase II transcription subunit 21
[Ovis aries]
gi|122137100|sp|Q2TBU8.1|MED21_BOVIN RecName: Full=Mediator of RNA polymerase II transcription subunit
21; AltName: Full=Mediator complex subunit 21; AltName:
Full=RNA polymerase II holoenzyme component SRB7;
Short=RNAPII complex component SRB7
gi|83638721|gb|AAI09637.1| Mediator complex subunit 21 [Bos taurus]
gi|296487330|tpg|DAA29443.1| TPA: mediator of RNA polymerase II transcription subunit 21 [Bos
taurus]
gi|440900374|gb|ELR51525.1| Mediator of RNA polymerase II transcription subunit 21 [Bos
grunniens mutus]
Length = 144
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 10/138 (7%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLS----PNYPEPPANPTEDAANFAEQPK 57
D ++QLQ+ +N +A N G LQ+ PP S + PANPTE+ A +
Sbjct: 3 DRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFSNIQTAINKDQPANPTEEYA------Q 56
Query: 58 LMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELK 117
L +A + + AK D L+ +LP E Q + +L+ EN L+ + + L+
Sbjct: 57 LFAALIARTAKDIDVLIDSLPSEESTAALQAASLYKLEEENHEAATSLEDVVYRGDMLLE 116
Query: 118 QVQELFSQAADNCLNLKK 135
++Q + A + L +
Sbjct: 117 KIQSALADIAQSQLKTRS 134
>gi|284519701|ref|NP_001165322.1| mediator complex subunit 21 [Xenopus (Silurana) tropicalis]
Length = 144
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 12/139 (8%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLS-----PNYPEPPANPTEDAANFAEQP 56
D ++QLQ+ +N +A N G LQ+ APP S N +PP NPTE+ A
Sbjct: 3 DRLTQLQDALNSLADQFCNAIGVLQQCAPPASFSNIQTGINKDQPP-NPTEEYA------ 55
Query: 57 KLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKEL 116
+L +A + + AK + L+ +LP E Q + +L+ EN A L+ + + L
Sbjct: 56 QLFAALIARTAKDIEVLIDSLPSEESTAALQAASLYQLEEENHAAAARLEEVVYRGDLLL 115
Query: 117 KQVQELFSQAADNCLNLKK 135
+++Q + A + L +
Sbjct: 116 EKIQTALADIAQSQLKTRS 134
>gi|148678764|gb|EDL10711.1| SRB7 (suppressor of RNA polymerase B) homolog (S. cerevisiae),
isoform CRA_b [Mus musculus]
Length = 152
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 10/130 (7%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLS----PNYPEPPANPTEDAANFAEQPK 57
D ++QLQ+ +N +A N G LQ+ PP S + PANPTE E +
Sbjct: 11 DRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFSNIQTAINKDQPANPTE------EYAQ 64
Query: 58 LMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELK 117
L +A + + AK D L+ +LP E Q + +L+ EN L+ + + L+
Sbjct: 65 LFAALIARTAKDIDVLIDSLPSEESTAALQAASLYKLEEENHEAATCLEDVVYRGDMLLE 124
Query: 118 QVQELFSQAA 127
++Q + A
Sbjct: 125 KIQSALADIA 134
>gi|71982184|ref|NP_001021184.1| Protein MDT-21 [Caenorhabditis elegans]
gi|75007290|sp|Q6BER6.1|MED21_CAEEL RecName: Full=Mediator of RNA polymerase II transcription subunit
21; AltName: Full=CeSRB7; AltName: Full=Mediator complex
subunit 21
gi|50507797|emb|CAH04698.1| Protein MDT-21 [Caenorhabditis elegans]
Length = 130
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 25/128 (19%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAANFAEQPKLMSA 61
D ++QLQ+ IN++AG+ N G LQ APP E ED N A + +A
Sbjct: 3 DRMTQLQDMINEMAGLMTNAIGVLQATAPPCEFGAISQE-----LEDEPNCA----IFAA 53
Query: 62 ALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQE 121
+ KAAK + L+ + P+ G +EA+++ ++ ++ EK+ ++V E
Sbjct: 54 GIAKAAKNIEILIDSFPIEAGNQEAEVE----------------EKMIKNDEKQREKVNE 97
Query: 122 LFSQAADN 129
L D+
Sbjct: 98 LVGLVGDS 105
>gi|327273515|ref|XP_003221526.1| PREDICTED: mediator of RNA polymerase II transcription subunit
21-like [Anolis carolinensis]
Length = 143
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 12/139 (8%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPP-----VRLSPNYPEPPANPTEDAANFAEQP 56
D ++QLQ+ +N +A N G LQ+ APP ++ S N + P NPTE+ A
Sbjct: 3 DRLTQLQDAVNSLADQFCNAIGVLQQCAPPASFSNIQTSIN-KDQPTNPTEEYA------ 55
Query: 57 KLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKEL 116
+L +A + + AK D L+ +LP E Q + L+ EN L+ + + L
Sbjct: 56 QLFAALIARTAKDIDVLIDSLPSEESTATLQAASLYRLEEENHEAAARLEEVVYRGDMLL 115
Query: 117 KQVQELFSQAADNCLNLKK 135
+++Q + A + L +
Sbjct: 116 EKIQTALADIAQSQLKTRS 134
>gi|442761287|gb|JAA72802.1| Putative mediator of rna polymerase ii transcription subunit,
partial [Ixodes ricinus]
Length = 155
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 68/133 (51%), Gaps = 5/133 (3%)
Query: 4 ISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAANFAEQ-PKLMSAA 62
++QLQ+ +N A N+ G LQ+ A P N+PE + T+ + E P+L ++
Sbjct: 21 LTQLQDAVNAQADNFCNSIGILQQFAQP----SNFPEFEKSLTKPGQSTQEDYPQLFASL 76
Query: 63 LVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQEL 122
+ + AK D L+ +LP E E Q + L+ EN + L+ ++ E L+Q+Q+
Sbjct: 77 VARTAKDIDVLIDSLPSEEASPELQAANLRRLELENQDAARRLEDVVQQGEALLEQIQQA 136
Query: 123 FSQAADNCLNLKK 135
A++ LN++
Sbjct: 137 LHDIAESQLNMQH 149
>gi|431908411|gb|ELK12008.1| Mediator of RNA polymerase II transcription subunit 21 [Pteropus
alecto]
Length = 144
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 12/124 (9%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPP-----VRLSPNYPEPPANPTEDAANFAEQP 56
D ++QLQ+ +N +A N G LQ+ PP ++ S N + PANPTE E
Sbjct: 3 DRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFSNIQTSIN-KDQPANPTE------EYA 55
Query: 57 KLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKEL 116
+L +A + + AK D L+ +LP E Q + +L+ EN L+ + + L
Sbjct: 56 QLFAALIARTAKDIDVLIDSLPSEESTAALQAASLYKLEEENHEAATCLEDVVYRGDMLL 115
Query: 117 KQVQ 120
+++Q
Sbjct: 116 EKIQ 119
>gi|343488490|ref|NP_001230459.1| mediator of RNA polymerase II transcription subunit 21 [Sus scrofa]
Length = 144
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 10/130 (7%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLS----PNYPEPPANPTEDAANFAEQPK 57
D ++QLQ+ +N +A N G LQ+ PP S + PANPTE+ A +
Sbjct: 3 DRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFSNIQTTINKDQPANPTEEYA------Q 56
Query: 58 LMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELK 117
L +A + + AK D L+ +LP E Q + +L+ EN L+ + + L+
Sbjct: 57 LFAALIARTAKDIDVLIDSLPSEESTAALQAASLYKLEEENHEAATCLEDVVYRGDMLLE 116
Query: 118 QVQELFSQAA 127
++Q + A
Sbjct: 117 KIQSALADIA 126
>gi|126340334|ref|XP_001362473.1| PREDICTED: mediator of RNA polymerase II transcription subunit
21-like [Monodelphis domestica]
Length = 144
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 10/130 (7%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRL----SPNYPEPPANPTEDAANFAEQPK 57
D ++QLQ+ +N +A N G LQ+ PP + + PANPTE E +
Sbjct: 3 DRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFNNIQTAINKDQPANPTE------EYAQ 56
Query: 58 LMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELK 117
L +A + + AK D L+ +LP E Q + +L+ EN L+ + + L+
Sbjct: 57 LFAALIARTAKDIDVLIDSLPSEESTAALQAASLCKLEEENHEAATCLEDVVYRGDMLLE 116
Query: 118 QVQELFSQAA 127
++Q + A
Sbjct: 117 KIQSALADIA 126
>gi|348569440|ref|XP_003470506.1| PREDICTED: mediator of RNA polymerase II transcription subunit
21-like [Cavia porcellus]
Length = 144
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 10/123 (8%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLS----PNYPEPPANPTEDAANFAEQPK 57
D ++QLQ+ +N +A N G LQ+ PP S + PANPTE E +
Sbjct: 3 DRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFSNIQTAINKDQPANPTE------EYAQ 56
Query: 58 LMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELK 117
L +A + + AK D L+ +LP E Q + +L+ EN L+ + + L+
Sbjct: 57 LFAALIARTAKDIDVLIDSLPSEESTAALQAASLYKLEEENHEAATCLEDVVYRGDMLLE 116
Query: 118 QVQ 120
++Q
Sbjct: 117 KIQ 119
>gi|13384678|ref|NP_079591.1| mediator of RNA polymerase II transcription subunit 21 [Mus
musculus]
gi|81880362|sp|Q9CQ39.1|MED21_MOUSE RecName: Full=Mediator of RNA polymerase II transcription subunit
21; AltName: Full=Mediator complex subunit 21; AltName:
Full=RNA polymerase II holoenzyme component SRB7;
Short=RNAPII complex component SRB7
gi|12844722|dbj|BAB26472.1| unnamed protein product [Mus musculus]
gi|12848826|dbj|BAB28104.1| unnamed protein product [Mus musculus]
gi|12852272|dbj|BAB29343.1| unnamed protein product [Mus musculus]
gi|12859613|dbj|BAB31711.1| unnamed protein product [Mus musculus]
gi|148678763|gb|EDL10710.1| SRB7 (suppressor of RNA polymerase B) homolog (S. cerevisiae),
isoform CRA_a [Mus musculus]
Length = 144
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 10/130 (7%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLS----PNYPEPPANPTEDAANFAEQPK 57
D ++QLQ+ +N +A N G LQ+ PP S + PANPTE E +
Sbjct: 3 DRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFSNIQTAINKDQPANPTE------EYAQ 56
Query: 58 LMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELK 117
L +A + + AK D L+ +LP E Q + +L+ EN L+ + + L+
Sbjct: 57 LFAALIARTAKDIDVLIDSLPSEESTAALQAASLYKLEEENHEAATCLEDVVYRGDMLLE 116
Query: 118 QVQELFSQAA 127
++Q + A
Sbjct: 117 KIQSALADIA 126
>gi|118083136|ref|XP_416442.2| PREDICTED: uncharacterized protein LOC418216 [Gallus gallus]
Length = 144
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 10/138 (7%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLS----PNYPEPPANPTEDAANFAEQPK 57
D ++QLQ+ +N +A N G LQ+ PP S + PANPTE+ A +
Sbjct: 3 DRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFSNIQTAINKDQPANPTEEYA------Q 56
Query: 58 LMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELK 117
L +A + + AK D L+ +LP E Q + L+ EN L+ + + L+
Sbjct: 57 LFAALIARTAKDIDVLIDSLPSEESTAALQAASLYRLEEENHEAAARLEEVVYRGDMLLE 116
Query: 118 QVQELFSQAADNCLNLKK 135
++Q + A + L +
Sbjct: 117 KIQSALADIAQSQLKTRS 134
>gi|351698169|gb|EHB01088.1| Mediator of RNA polymerase II transcription subunit 21
[Heterocephalus glaber]
Length = 144
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 10/130 (7%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLS----PNYPEPPANPTEDAANFAEQPK 57
D ++QLQ+ +N +A N G LQ+ PP S + PANPTE+ A +
Sbjct: 3 DRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFSNIQTAVNKDQPANPTEEYA------Q 56
Query: 58 LMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELK 117
L +A + + AK D L+ +LP E Q + +L+ EN L+ + + L+
Sbjct: 57 LFAALIARTAKDIDVLIDSLPSEESTAALQAASLYKLEEENHEAATCLEDVVYRGDMLLE 116
Query: 118 QVQELFSQAA 127
++Q + A
Sbjct: 117 KIQSALADIA 126
>gi|326912445|ref|XP_003202561.1| PREDICTED: mediator of RNA polymerase II transcription subunit
21-like [Meleagris gallopavo]
Length = 144
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 10/138 (7%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLS----PNYPEPPANPTEDAANFAEQPK 57
D ++QLQ+ +N +A N G LQ+ PP S + PANPTE+ A +
Sbjct: 3 DRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFSNIQTAINKDQPANPTEEYA------Q 56
Query: 58 LMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELK 117
L +A + + AK D L+ +LP E Q + L+ EN L+ + + L+
Sbjct: 57 LFAALIARTAKDIDVLIDSLPSEESTAALQAASLYRLEEENHEAAARLEEVVYRGDMLLE 116
Query: 118 QVQELFSQAADNCLNLKK 135
++Q + A + L +
Sbjct: 117 KIQSALADIAQSQLKTRS 134
>gi|355701773|gb|AES01788.1| mediator complex subunit 21 [Mustela putorius furo]
Length = 146
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 10/130 (7%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLS----PNYPEPPANPTEDAANFAEQPK 57
D ++QLQ+ +N +A N G LQ+ PP S + PANPTE+ A +
Sbjct: 6 DRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFSNIQTAINKDQPANPTEEYA------Q 59
Query: 58 LMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELK 117
L +A + + AK D L+ +LP E Q + +L+ EN L+ + + L+
Sbjct: 60 LFAALIARTAKDIDVLIDSLPSEESTAALQAASLYKLEEENHEAATCLEDVVYRGDMLLE 119
Query: 118 QVQELFSQAA 127
++Q + A
Sbjct: 120 KIQSALADIA 129
>gi|15126724|gb|AAH12286.1| Med21 protein [Mus musculus]
Length = 144
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 10/130 (7%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLS----PNYPEPPANPTEDAANFAEQPK 57
D ++QLQ+ +N +A N G LQ+ PP S + PANPTE E +
Sbjct: 3 DRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFSNIQTAINKDQPANPTE------EYAQ 56
Query: 58 LMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELK 117
L +A + + AK D L+ +LP E Q + +L+ EN L+ + + L+
Sbjct: 57 LFAALIARTAKDIDVLIDSLPSEESTAALQAASLYKLEEENHEAATCLEDVVYRGDMLLE 116
Query: 118 QVQELFSQAA 127
++Q + A
Sbjct: 117 KIQSALADIA 126
>gi|345329138|ref|XP_001505512.2| PREDICTED: mediator of RNA polymerase II transcription subunit
21-like [Ornithorhynchus anatinus]
Length = 144
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 10/130 (7%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLS----PNYPEPPANPTEDAANFAEQPK 57
D ++QLQ+ +N +A N G LQ+ PP S + PANPTE E +
Sbjct: 3 DRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFSNIQTAINKDQPANPTE------EYAQ 56
Query: 58 LMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELK 117
L +A + + AK D L+ +LP E Q + +L+ EN L+ + + L+
Sbjct: 57 LFAALIARTAKDIDVLIDSLPSEESTAALQAASLHKLEDENHEAATCLEDVVYRGDLLLE 116
Query: 118 QVQELFSQAA 127
++Q + A
Sbjct: 117 KIQSALADIA 126
>gi|308912530|ref|NP_001184240.1| mediator of RNA polymerase II transcription subunit 21 [Canis lupus
familiaris]
gi|335352232|ref|NP_001229441.1| mediator complex subunit 21 [Equus caballus]
gi|301763485|ref|XP_002917154.1| PREDICTED: mediator of RNA polymerase II transcription subunit
21-like [Ailuropoda melanoleuca]
gi|332232972|ref|XP_003265678.1| PREDICTED: mediator of RNA polymerase II transcription subunit 21
[Nomascus leucogenys]
gi|344267793|ref|XP_003405750.1| PREDICTED: mediator of RNA polymerase II transcription subunit
21-like [Loxodonta africana]
gi|403269208|ref|XP_003926646.1| PREDICTED: mediator of RNA polymerase II transcription subunit 21
[Saimiri boliviensis boliviensis]
gi|410964043|ref|XP_003988566.1| PREDICTED: mediator of RNA polymerase II transcription subunit 21
[Felis catus]
gi|308229551|gb|ADO24193.1| mediator complex subunit 21 [Canis lupus familiaris]
gi|432110124|gb|ELK33903.1| Mediator of RNA polymerase II transcription subunit 21 [Myotis
davidii]
Length = 144
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 10/130 (7%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLS----PNYPEPPANPTEDAANFAEQPK 57
D ++QLQ+ +N +A N G LQ+ PP S + PANPTE+ A +
Sbjct: 3 DRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFSNIQTAINKDQPANPTEEYA------Q 56
Query: 58 LMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELK 117
L +A + + AK D L+ +LP E Q + +L+ EN L+ + + L+
Sbjct: 57 LFAALIARTAKDIDVLIDSLPSEESTAALQAASLYKLEEENHEAATCLEDVVYRGDMLLE 116
Query: 118 QVQELFSQAA 127
++Q + A
Sbjct: 117 KIQSALADIA 126
>gi|395538968|ref|XP_003771446.1| PREDICTED: mediator of RNA polymerase II transcription subunit 21
[Sarcophilus harrisii]
Length = 144
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 10/130 (7%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRL----SPNYPEPPANPTEDAANFAEQPK 57
D ++QLQ+ +N +A N G LQ+ PP + + PANPTE E +
Sbjct: 3 DRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFNNIQTAINKDQPANPTE------EYAQ 56
Query: 58 LMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELK 117
L +A + + AK D L+ +LP E Q + +L+ EN L+ + + L+
Sbjct: 57 LFAALIARTAKDIDVLIDSLPSEESTAALQAASLCKLEEENHEAATCLEDVVCRGDMLLE 116
Query: 118 QVQELFSQAA 127
++Q + A
Sbjct: 117 KIQSALADIA 126
>gi|384475807|ref|NP_001245049.1| mediator of RNA polymerase II transcription subunit 21 [Macaca
mulatta]
gi|402885491|ref|XP_003906188.1| PREDICTED: mediator of RNA polymerase II transcription subunit 21
[Papio anubis]
gi|75076433|sp|Q4R6N3.1|MED21_MACFA RecName: Full=Mediator of RNA polymerase II transcription subunit
21; AltName: Full=Mediator complex subunit 21; AltName:
Full=RNA polymerase II holoenzyme component SRB7;
Short=RNAPII complex component SRB7
gi|67969788|dbj|BAE01242.1| unnamed protein product [Macaca fascicularis]
gi|355746056|gb|EHH50681.1| Mediator complex subunit 21 [Macaca fascicularis]
gi|383414127|gb|AFH30277.1| mediator of RNA polymerase II transcription subunit 21 [Macaca
mulatta]
Length = 144
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 10/130 (7%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLS----PNYPEPPANPTEDAANFAEQPK 57
D ++QLQ+ +N +A N G LQ+ PP S + PANPTE+ A +
Sbjct: 3 DRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFSNIQTAINKDQPANPTEEYA------Q 56
Query: 58 LMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELK 117
L +A + + AK D L+ +LP E Q + +L+ EN L+ + + L+
Sbjct: 57 LFAALIARTAKDIDVLIDSLPSEESTAALQAASLYKLEEENHEAATCLEDVVYRGDMLLE 116
Query: 118 QVQELFSQAA 127
++Q + A
Sbjct: 117 KIQSALADIA 126
>gi|388556534|ref|NP_001101365.2| mediator of RNA polymerase II transcription subunit 21 [Rattus
norvegicus]
gi|149048956|gb|EDM01410.1| SRB7 (suppressor of RNA polymerase B) homolog (S. cerevisiae)
(predicted), isoform CRA_a [Rattus norvegicus]
Length = 144
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 10/130 (7%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLS----PNYPEPPANPTEDAANFAEQPK 57
D ++QLQ+ +N +A N G LQ+ PP S + PANPTE E +
Sbjct: 3 DRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFSNIQTAINKDQPANPTE------EYAQ 56
Query: 58 LMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELK 117
L +A + + AK D L+ +LP E Q + +L+ EN L+ + + L+
Sbjct: 57 LFAALIARTAKDIDVLIDSLPSEESTAALQAASLYKLEEENHEAATCLEDVVYRGDMLLE 116
Query: 118 QVQELFSQAA 127
++Q + A
Sbjct: 117 KIQSALADIA 126
>gi|354493733|ref|XP_003508994.1| PREDICTED: mediator of RNA polymerase II transcription subunit
21-like [Cricetulus griseus]
gi|344257534|gb|EGW13638.1| Mediator of RNA polymerase II transcription subunit 21 [Cricetulus
griseus]
Length = 144
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 10/130 (7%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLS----PNYPEPPANPTEDAANFAEQPK 57
D ++QLQ+ +N +A N G LQ+ PP S + PANPTE E +
Sbjct: 3 DRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFSNIQTAINKDQPANPTE------EYAQ 56
Query: 58 LMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELK 117
L +A + + AK D L+ +LP E Q + +L+ EN L+ + + L+
Sbjct: 57 LFAALIARTAKDIDVLIDSLPSEESTAALQAASLYKLEEENHEAATCLEDVVYRGDMLLE 116
Query: 118 QVQELFSQAA 127
++Q + A
Sbjct: 117 KIQSALADIA 126
>gi|312384249|gb|EFR29017.1| hypothetical protein AND_24115 [Anopheles darlingi]
Length = 138
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 65/133 (48%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAANFAEQPKLMSA 61
D ++QLQ+ +NQ A N+ G LQ+ + P + + P + + P+L S
Sbjct: 3 DRLTQLQDTVNQQAEHFCNSIGILQQCSVPSKFAGFERTGSQTPQQQVQTQEDYPQLFST 62
Query: 62 ALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQE 121
+ + AK D L+ +LP E E Q++ + L+ EN + L+ + E L+++Q
Sbjct: 63 LISRCAKDIDTLIESLPSEESSIELQVQSLQRLEQENKESAEKLEEIVRKGELLLEKIQA 122
Query: 122 LFSQAADNCLNLK 134
S A + L+++
Sbjct: 123 ALSDIAQSQLDMQ 135
>gi|47087387|ref|NP_998588.1| mediator of RNA polymerase II transcription subunit 21 [Danio
rerio]
gi|82188302|sp|Q7ZTI5.1|MED21_DANRE RecName: Full=Mediator of RNA polymerase II transcription subunit
21; AltName: Full=Mediator complex subunit 21; AltName:
Full=RNA polymerase II holoenzyme component SRB7;
Short=RNAPII complex component SRB7
gi|29294697|gb|AAH49042.1| Mediator complex subunit 21 [Danio rerio]
Length = 145
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 10/138 (7%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLS----PNYPEPPANPTEDAANFAEQPK 57
D ++QLQ+ +N +A N G LQ+ APP S + P+NPTE+ A +
Sbjct: 3 DRLTQLQDAVNSLADQFCNAIGVLQQCAPPASFSNIQTAINKDQPSNPTEEYA------Q 56
Query: 58 LMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELK 117
L +A + + AK D L+ +LP E Q + +L+ EN L+ + + L+
Sbjct: 57 LFAALIARTAKDVDVLIDSLPSEESTAALQAASLRQLEEENQEAAARLEEVVYRGDALLE 116
Query: 118 QVQELFSQAADNCLNLKK 135
++Q + A + L +
Sbjct: 117 KIQTALADIAQSQLRTRS 134
>gi|346471179|gb|AEO35434.1| hypothetical protein [Amblyomma maculatum]
Length = 144
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 68/141 (48%), Gaps = 17/141 (12%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPE-------PPANPTEDAANFAE 54
D ++QLQ+ +N A N+ G LQ+ A P ++PE P P ED
Sbjct: 3 DRLTQLQDAVNAQADNFCNSIGILQQYAAPS----SFPEFEKTVSKPGQQPQEDY----- 53
Query: 55 QPKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEK 114
P+L ++ + + AK D L+ +LP E E Q + L+ EN + L+ ++ E
Sbjct: 54 -PQLFASLIARTAKDIDVLIDSLPSEEASPELQAANLRRLEVENQEAARRLEEVVQQGEA 112
Query: 115 ELKQVQELFSQAADNCLNLKK 135
L+Q+Q+ A++ L+++
Sbjct: 113 LLEQIQKALHDIAESQLSMQH 133
>gi|291392481|ref|XP_002712740.1| PREDICTED: mediator complex subunit 21 [Oryctolagus cuniculus]
Length = 144
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 10/138 (7%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRL----SPNYPEPPANPTEDAANFAEQPK 57
D ++QLQ+ +N +A N G LQ+ PP + + PANPTE+ A +
Sbjct: 3 DRLTQLQDAVNSLADQFCNAIGVLQQGGPPASFNNIQTAINKDQPANPTEEYA------Q 56
Query: 58 LMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELK 117
L +A + + AK D L+ +LP E Q + +L+ EN L+ + + L+
Sbjct: 57 LFAALIARTAKDIDVLIDSLPSEESTAALQAASLYKLEEENHEAATCLEDVVYRGDMLLE 116
Query: 118 QVQELFSQAADNCLNLKK 135
++Q + A + L +
Sbjct: 117 KIQSALADIAQSQLKTRS 134
>gi|157127307|ref|XP_001654915.1| Srb7p: RNA polymerase II holoenzyme component, putative [Aedes
aegypti]
gi|121955142|sp|Q16RX1.1|MED21_AEDAE RecName: Full=Mediator of RNA polymerase II transcription subunit
21; AltName: Full=Mediator complex subunit 21
gi|108872953|gb|EAT37178.1| AAEL010797-PA [Aedes aegypti]
Length = 141
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 12/138 (8%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPE-----PPANPTEDAANFAEQP 56
D ++QLQ+ +NQ A N+ G LQ+ + P + P + P N ED A
Sbjct: 3 DRLTQLQDTVNQQAEHFCNSIGILQQCSVPSKF-PGFERTGSQTPQQNQQEDYA------ 55
Query: 57 KLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKEL 116
+L S + + AK D L+ +LP E E Q++ + L+ EN + L+ + E L
Sbjct: 56 QLFSTLISRCAKDIDTLIESLPSEESSIELQVQALKRLEIENQESAEKLEEVVRKGELLL 115
Query: 117 KQVQELFSQAADNCLNLK 134
+++Q S A + L+++
Sbjct: 116 EKIQAALSDIAQSQLDMQ 133
>gi|440789617|gb|ELR10923.1| Legumelike lectin family protein [Acanthamoeba castellanii str.
Neff]
Length = 619
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 69/158 (43%), Gaps = 39/158 (24%)
Query: 2 DIISQLQEQINQIAGIAFNTF-GTLQRDAPPVRL-------------------------- 34
D ++QLQ++I+ + G F TF G LQ+DAPP+
Sbjct: 27 DRVTQLQDKIDGL-GEKFYTFIGVLQQDAPPLPFDEFKHLNRTADGPKTVANGANAAVAD 85
Query: 35 -SPNYPEPPANPT-EDAANFAEQPKL---------MSAALVKAAKQFDALVAALPLAEGG 83
P P P+ P E AA P + M+A L+ K+ D L+ +LP
Sbjct: 86 GGPVLPVLPSMPMPEPAAPVPTGPTMEVMEGEAANMAALLLNNVKEVDMLIDSLPGINST 145
Query: 84 EEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQE 121
+ QLKR+ EL+ +N Q L+ L AE+ L VQ+
Sbjct: 146 KPEQLKRLQELEKQNQHTAQSLRETLSWAEETLVLVQQ 183
>gi|213513918|ref|NP_001135378.1| Mediator of RNA polymerase II transcription subunit 21 [Salmo
salar]
gi|209738494|gb|ACI70116.1| Mediator of RNA polymerase II transcription subunit 21 [Salmo
salar]
Length = 145
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 10/138 (7%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLS----PNYPEPPANPTEDAANFAEQPK 57
D ++QLQ+ +N +A N G LQ+ APP S + P+NPTE+ A +
Sbjct: 3 DRLTQLQDAVNSLADQFCNAIGVLQQCAPPASFSNIQTAINKDQPSNPTEEYA------Q 56
Query: 58 LMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELK 117
L +A + + AK D L+ +LP E Q + +L+ EN L+ + + L+
Sbjct: 57 LFAALIARTAKDVDVLIDSLPSEESTAALQAASLRQLEEENHDAAARLEDVVYRGDLLLE 116
Query: 118 QVQELFSQAADNCLNLKK 135
++Q + A + L +
Sbjct: 117 KIQSALADIAQSQLRTRS 134
>gi|355564096|gb|EHH20596.1| Mediator complex subunit 21 [Macaca mulatta]
Length = 144
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 10/130 (7%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRL----SPNYPEPPANPTEDAANFAEQPK 57
D ++QLQ+ +N +A N G LQ+ PP + + PANPTE+ A +
Sbjct: 3 DRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFNNIQTAINKDQPANPTEEYA------Q 56
Query: 58 LMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELK 117
L +A + + AK D L+ +LP E Q + +L+ EN L+ + + L+
Sbjct: 57 LFAALIARTAKDIDVLIDSLPSEESTAALQAASLYKLEEENHEAATCLEDVVYRGDMLLE 116
Query: 118 QVQELFSQAA 127
++Q + A
Sbjct: 117 KIQSALADIA 126
>gi|21361161|ref|NP_004255.2| mediator of RNA polymerase II transcription subunit 21 isoform 1
[Homo sapiens]
gi|114645559|ref|XP_001143632.1| PREDICTED: uncharacterized protein LOC465356 isoform 1 [Pan
troglodytes]
gi|395839267|ref|XP_003792518.1| PREDICTED: mediator of RNA polymerase II transcription subunit 21
[Otolemur garnettii]
gi|397517399|ref|XP_003828901.1| PREDICTED: mediator of RNA polymerase II transcription subunit 21
[Pan paniscus]
gi|426372051|ref|XP_004052945.1| PREDICTED: mediator of RNA polymerase II transcription subunit 21
[Gorilla gorilla gorilla]
gi|7531204|sp|Q13503.1|MED21_HUMAN RecName: Full=Mediator of RNA polymerase II transcription subunit
21; AltName: Full=Mediator complex subunit 21; AltName:
Full=RNA polymerase II holoenzyme component SRB7;
Short=RNAPII complex component SRB7; Short=hSrb7
gi|1197663|gb|AAA98511.1| SRB7 [Homo sapiens]
gi|14249987|gb|AAH08380.1| Mediator complex subunit 21 [Homo sapiens]
gi|48146115|emb|CAG33280.1| SURB7 [Homo sapiens]
gi|119616951|gb|EAW96545.1| SRB7 suppressor of RNA polymerase B homolog (yeast), isoform CRA_b
[Homo sapiens]
gi|119616953|gb|EAW96547.1| SRB7 suppressor of RNA polymerase B homolog (yeast), isoform CRA_b
[Homo sapiens]
gi|167774049|gb|ABZ92459.1| mediator complex subunit 21 [synthetic construct]
gi|189053158|dbj|BAG34780.1| unnamed protein product [Homo sapiens]
gi|208966724|dbj|BAG73376.1| mediator complex subunit 21 [synthetic construct]
gi|410207392|gb|JAA00915.1| mediator complex subunit 21 [Pan troglodytes]
gi|410288670|gb|JAA22935.1| mediator complex subunit 21 [Pan troglodytes]
gi|410349805|gb|JAA41506.1| mediator complex subunit 21 [Pan troglodytes]
gi|1587896|prf||2207342A SRB protein
Length = 144
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 10/130 (7%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRL----SPNYPEPPANPTEDAANFAEQPK 57
D ++QLQ+ +N +A N G LQ+ PP + + PANPTE+ A +
Sbjct: 3 DRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFNNIQTAINKDQPANPTEEYA------Q 56
Query: 58 LMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELK 117
L +A + + AK D L+ +LP E Q + +L+ EN L+ + + L+
Sbjct: 57 LFAALIARTAKDIDVLIDSLPSEESTAALQAASLYKLEEENHEAATCLEDVVYRGDMLLE 116
Query: 118 QVQELFSQAA 127
++Q + A
Sbjct: 117 KIQSALADIA 126
>gi|225706068|gb|ACO08880.1| Mediator of RNA polymerase II transcription subunit 21 [Osmerus
mordax]
Length = 173
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 10/130 (7%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRL----SPNYPEPPANPTEDAANFAEQPK 57
D ++QLQ+ +N +A N G LQ+ APP + + P+NPTE+ A +
Sbjct: 31 DRLTQLQDAVNSLADQFCNAIGVLQQCAPPASFNNIQTALNKDQPSNPTEEYA------Q 84
Query: 58 LMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELK 117
L +A + + AK D L+ +LP E Q + +L+ EN L+ + + L+
Sbjct: 85 LFAALIARTAKDVDVLIDSLPSEESTAALQAASLRQLEEENHEAATRLEEVVYRGDLLLE 144
Query: 118 QVQELFSQAA 127
++Q + A
Sbjct: 145 KIQSALADIA 154
>gi|444732223|gb|ELW72529.1| Mediator of RNA polymerase II transcription subunit 21 [Tupaia
chinensis]
Length = 245
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 10/137 (7%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRL----SPNYPEPPANPTEDAANFAEQPK 57
D ++QLQ+ +N +A N G LQ+ PP + + PANPTE+ A +
Sbjct: 45 DRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFNNIQTAINKDQPANPTEEYA------Q 98
Query: 58 LMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELK 117
L +A + + AK D L+ +LP E Q + +L+ EN L+ + + L+
Sbjct: 99 LFAALIARTAKDIDVLIDSLPSEESTAALQAASLYKLEEENHEAATCLEDVVYRGDMLLE 158
Query: 118 QVQELFSQAADNCLNLK 134
++Q + A + L +
Sbjct: 159 KIQSALADIAQSQLKTR 175
>gi|391346800|ref|XP_003747656.1| PREDICTED: mediator of RNA polymerase II transcription subunit
21-like [Metaseiulus occidentalis]
Length = 151
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 16/140 (11%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPE------PPANPTEDAANFAEQ 55
D ++QLQ+ +N A N+ G LQ+ A P +PE P + P ED A
Sbjct: 3 DRLTQLQDSVNLQAENFCNSIGILQQLAQP----STFPEFEKTGKPSSQPQEDYA----- 53
Query: 56 PKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKE 115
+L + + + AK D L+ +LP E E Q + +L+ EN+ LQ + E
Sbjct: 54 -QLFATMIARTAKDMDVLIESLPGEEAAPELQANNLQKLEIENNEAANRLQEVVMRGECL 112
Query: 116 LKQVQELFSQAADNCLNLKK 135
L QVQ+ ++ A L+ K+
Sbjct: 113 LAQVQKALAEIASQQLSSKQ 132
>gi|170055487|ref|XP_001863604.1| Srb7p: RNA polymerase II holoenzyme component [Culex
quinquefasciatus]
gi|167875427|gb|EDS38810.1| Srb7p: RNA polymerase II holoenzyme component [Culex
quinquefasciatus]
Length = 141
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 66/133 (49%), Gaps = 2/133 (1%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAANFAEQPKLMSA 61
D ++QLQ+ +NQ A N+ G LQ+ + P + P + E + T + +L S
Sbjct: 3 DRLTQLQDTVNQQAEHFCNSIGILQQGSVPSKF-PGF-ERTGSQTPQQTQQEDYAQLFST 60
Query: 62 ALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQE 121
+ + AK D L+ +LP E E Q++ + L+ EN + L+ + E L+++Q
Sbjct: 61 LISRCAKDIDTLIESLPSEESSIELQVQALKRLEVENQDSAEKLEEVVRKGELLLEKIQA 120
Query: 122 LFSQAADNCLNLK 134
S A + L+++
Sbjct: 121 ALSDIAQSQLDMQ 133
>gi|259089393|ref|NP_001158522.1| Mediator of RNA polymerase II transcription subunit 21
[Oncorhynchus mykiss]
gi|225703874|gb|ACO07783.1| Mediator of RNA polymerase II transcription subunit 21
[Oncorhynchus mykiss]
Length = 145
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 10/138 (7%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRL----SPNYPEPPANPTEDAANFAEQPK 57
D ++QLQ+ +N +A N G LQ+ APP + + P+NPTE+ A +
Sbjct: 3 DRLTQLQDAVNSLADQFCNAIGVLQQCAPPASFGNIQTAINKDQPSNPTEEYA------Q 56
Query: 58 LMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELK 117
L +A + + AK D L+ +LP E Q + +L+ EN L+ + + L+
Sbjct: 57 LFAALIARTAKDVDVLIDSLPSEESTAALQAASLRQLEEENHDAAARLEEVVYRGDLLLE 116
Query: 118 QVQELFSQAADNCLNLKK 135
++Q + A + L +
Sbjct: 117 KIQSALADIAQSQLRTRS 134
>gi|62862152|ref|NP_001015223.1| mediator complex subunit 21, isoform A [Drosophila melanogaster]
gi|62862154|ref|NP_001015224.1| mediator complex subunit 21, isoform B [Drosophila melanogaster]
gi|74872847|sp|Q9W5P1.1|MED21_DROME RecName: Full=Mediator of RNA polymerase II transcription subunit
21; AltName: Full=Mediator complex subunit 21; AltName:
Full=dMED21; AltName: Full=dSRB7; AltName: Full=dTRAP19
gi|17945180|gb|AAL48649.1| RE10855p [Drosophila melanogaster]
gi|51951116|gb|EAL24605.1| mediator complex subunit 21, isoform A [Drosophila melanogaster]
gi|51951117|gb|EAL24606.1| mediator complex subunit 21, isoform B [Drosophila melanogaster]
Length = 142
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 13/125 (10%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPV------RLSPNYPEPPANPTEDAANFAEQ 55
D ++QLQ+ +NQ A N G +Q+ + P R+ P P P P ED A
Sbjct: 3 DRLTQLQDTVNQQAEHFCNAIGVIQQTSLPSKFVNFERIGPQTP-IPCPPQEDYA----- 56
Query: 56 PKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKE 115
+L + + + AK D L+ +LP + E Q + L+ EN +DL+ ++ E
Sbjct: 57 -QLFAQLIARCAKDIDTLIESLPNEDSSIELQNSSLKRLEIENQGTARDLEEVVQKGELL 115
Query: 116 LKQVQ 120
L+++Q
Sbjct: 116 LEKMQ 120
>gi|195356444|ref|XP_002044682.1| GM18771 [Drosophila sechellia]
gi|195553637|ref|XP_002076708.1| GD11954 [Drosophila simulans]
gi|194133848|gb|EDW55364.1| GM18771 [Drosophila sechellia]
gi|194202087|gb|EDX15663.1| GD11954 [Drosophila simulans]
Length = 142
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 13/125 (10%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPV------RLSPNYPEPPANPTEDAANFAEQ 55
D ++QLQ+ +NQ A N G +Q+ + P R+ P P P P ED A
Sbjct: 3 DRLTQLQDTVNQQAEHFCNAIGVIQQTSLPSKFVNFERIGPQTP-IPCPPQEDYA----- 56
Query: 56 PKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKE 115
+L + + + AK D L+ +LP + E Q + L+ EN +DL+ ++ E
Sbjct: 57 -QLFAQLIARCAKDIDTLIESLPNEDSSIELQNSSLKRLEIENQGTARDLEEVVQRGELL 115
Query: 116 LKQVQ 120
L+++Q
Sbjct: 116 LEKMQ 120
>gi|1515377|gb|AAB06944.1| RNA polymerase II complex component SRB7 [Homo sapiens]
Length = 144
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 10/101 (9%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRL----SPNYPEPPANPTEDAANFAEQPK 57
D ++QLQ+ +N +A N G LQ+ PP + + PANPTE+ A +
Sbjct: 3 DRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFNNIQTAINKDQPANPTEEYA------Q 56
Query: 58 LMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSEN 98
L +A + + AK D L+ +LP E Q + +L+ EN
Sbjct: 57 LFAALIARTAKDIDVLIDSLPSEESTAALQAASLYKLEEEN 97
>gi|195156902|ref|XP_002019335.1| GL12347 [Drosophila persimilis]
gi|198454566|ref|XP_002137901.1| GA27478 [Drosophila pseudoobscura pseudoobscura]
gi|194115926|gb|EDW37969.1| GL12347 [Drosophila persimilis]
gi|198132852|gb|EDY68459.1| GA27478 [Drosophila pseudoobscura pseudoobscura]
Length = 144
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 19/128 (14%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRL---------SPNYPEPPANPTEDAANF 52
D ++QLQ+ +NQ A N G +Q+ + P + +PN P+ P ED A
Sbjct: 3 DRLTQLQDTVNQQAEHFCNAIGVIQQTSYPSKFGNFDRTGSQTPN----PSQPQEDYA-- 56
Query: 53 AEQPKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAA 112
+L + + + AK D L+ +LP + E Q + L+ EN DL++ ++
Sbjct: 57 ----QLFAQLIARCAKDIDTLIESLPNEDSSIELQNSSLKRLEMENQETALDLEKVVQKG 112
Query: 113 EKELKQVQ 120
E L+++Q
Sbjct: 113 ELLLEKIQ 120
>gi|197101815|ref|NP_001124922.1| mediator of RNA polymerase II transcription subunit 21 [Pongo
abelii]
gi|75042445|sp|Q5RE46.1|MED21_PONAB RecName: Full=Mediator of RNA polymerase II transcription subunit
21; AltName: Full=Mediator complex subunit 21; AltName:
Full=RNA polymerase II holoenzyme component SRB7;
Short=RNAPII complex component SRB7
gi|55726383|emb|CAH89961.1| hypothetical protein [Pongo abelii]
Length = 144
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 10/123 (8%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLS----PNYPEPPANPTEDAANFAEQPK 57
D ++QLQ+ +N +A N G LQ+ PP S + PAN TE E +
Sbjct: 3 DRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFSNIQTAINKDQPANSTE------EYAQ 56
Query: 58 LMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELK 117
L +A + + AK D L+ +LP E Q + +L+ EN L+ + + L+
Sbjct: 57 LFAALIARTAKDIDVLIDSLPSEESTAALQAASLYKLEEENHEAATCLEDVVYRGDMLLE 116
Query: 118 QVQ 120
++Q
Sbjct: 117 KIQ 119
>gi|443716336|gb|ELU07912.1| hypothetical protein CAPTEDRAFT_161379 [Capitella teleta]
Length = 166
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 7/121 (5%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLS--PNYPEPPANPTEDAANFAEQPKLM 59
D ++QLQ+ +NQ+A N G +Q+ APP + + A T D E L
Sbjct: 3 DRLTQLQDAVNQMADHFCNAVGIMQQMAPPGQFAGFEKSVSKQAQVTSD-----EHAALF 57
Query: 60 SAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQV 119
+ + + AK D L+ +LP E E Q+ + +L+ +N Q+LQ ++ L+
Sbjct: 58 AQLIARTAKDIDVLIDSLPSEESTPELQMASLLQLEQDNQEAAQELQHAVDHGTLVLQST 117
Query: 120 Q 120
Q
Sbjct: 118 Q 118
>gi|268572609|ref|XP_002641365.1| C. briggsae CBR-MDT-21 protein [Caenorhabditis briggsae]
Length = 164
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 61/119 (51%), Gaps = 22/119 (18%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVR---LSPNYPEPPANPTEDAANFAEQPKL 58
D ++QLQ+ IN++A + N G LQ APP +S ++ E P + A FA
Sbjct: 3 DRMTQLQDMINEMASLMTNAIGVLQATAPPCEFDAISQDHEEEP-----NCAIFA----- 52
Query: 59 MSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELK 117
A++ K+AK + L+ + P+ G E +++ + +NDAV QR+ KELK
Sbjct: 53 --ASIAKSAKNIEILIDSFPIEAGNMEDEVE---QKMIQNDAV----QREKVGELKELK 102
>gi|281206051|gb|EFA80240.1| hypothetical protein PPL_07065 [Polysphondylium pallidum PN500]
Length = 124
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 56/107 (52%), Gaps = 5/107 (4%)
Query: 1 MDIISQLQEQINQIAGIAFNTF-GTLQRDAPPVRLSPNYPEPPANPTEDAANFAEQPKLM 59
MD+++QLQ++++ + + F TF G LQRDAP E + ++ Q K M
Sbjct: 1 MDLLTQLQDKLDHLF-LVFGTFIGVLQRDAPASSFENGL---LLQDNETLSKWSTQTKEM 56
Query: 60 SAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQ 106
+ +++ +K ++++ +LP EE Q R+ L E+ + Q ++
Sbjct: 57 ALQVIETSKLIESIIDSLPGFNRNEEDQYNRLRALNDESIQLNQTIE 103
>gi|321474643|gb|EFX85608.1| hypothetical protein DAPPUDRAFT_300243 [Daphnia pulex]
Length = 138
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 11/123 (8%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPE----PPANPTEDAANFAEQPK 57
D ++QLQ+ IN A N G LQ+ APP P + P ED A+
Sbjct: 3 DRLTQLQDAINAQADNFCNAIGILQQTAPPATF-PGFDRAGNRTPQQQQEDHAS------ 55
Query: 58 LMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELK 117
L + + + AK D L+ +LP + E Q+ + L++EN++ L+ + E L+
Sbjct: 56 LFATLIARCAKDIDVLIDSLPSEDSTSELQIASLRRLENENESAAARLREVVSEGELMLE 115
Query: 118 QVQ 120
++Q
Sbjct: 116 KIQ 118
>gi|291239992|ref|XP_002739900.1| PREDICTED: SRB7 (supressor of RNA polymerase B) homolog
[Saccoglossus kowalevskii]
Length = 135
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 8/128 (6%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAANFAEQPKLMSA 61
D ++QLQ+ +NQ+A N+ G LQ + P + S + ED + L+ A
Sbjct: 3 DRLTQLQDAVNQLADHFCNSIGVLQESSVPGKFSGFDKQEQQQQAEDNS-------LLFA 55
Query: 62 ALV-KAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQ 120
L+ + AK D L+ +LP + E Q I L++EN+ + L+ + E L+++Q
Sbjct: 56 QLIARTAKDIDVLIDSLPSEDATVELQNASIQRLENENEEAARKLKDIVRKGEILLERIQ 115
Query: 121 ELFSQAAD 128
+ AD
Sbjct: 116 SALKEIAD 123
>gi|148678765|gb|EDL10712.1| SRB7 (suppressor of RNA polymerase B) homolog (S. cerevisiae),
isoform CRA_c [Mus musculus]
gi|149048957|gb|EDM01411.1| SRB7 (suppressor of RNA polymerase B) homolog (S. cerevisiae)
(predicted), isoform CRA_b [Rattus norvegicus]
Length = 90
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 10/92 (10%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLS----PNYPEPPANPTEDAANFAEQPK 57
D ++QLQ+ +N +A N G LQ+ PP S + PANPTE+ A +
Sbjct: 3 DRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFSNIQTAINKDQPANPTEEYA------Q 56
Query: 58 LMSAALVKAAKQFDALVAALPLAEGGEEAQLK 89
L +A + + AK D L+ +LP E Q+K
Sbjct: 57 LFAALIARTAKDIDVLIDSLPSEESTAALQVK 88
>gi|221116255|ref|XP_002155238.1| PREDICTED: mediator of RNA polymerase II transcription subunit
21-like [Hydra magnipapillata]
Length = 136
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 65/134 (48%), Gaps = 7/134 (5%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNY-PEPPANPTEDAANFAEQPKLMS 60
D ++QLQ+ +NQ+A N+ G +Q+ A L N P+ + T++ +L +
Sbjct: 3 DRLTQLQDALNQLAEHFCNSIGVIQQTAAVCTLQKNTNPKTEFDITQEG-----HAQLFA 57
Query: 61 AALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQ 120
+ + K D ++ LP + E Q K + +L+ EN+ + L + + E+ L Q++
Sbjct: 58 TLISRTVKDIDYIIETLPSGKSN-ELQTKSLIQLEYENEVARKQLSQLVADGEELLSQIK 116
Query: 121 ELFSQAADNCLNLK 134
S ++ L+ K
Sbjct: 117 NAISSVSNTVLSSK 130
>gi|195496956|ref|XP_002095896.1| GE25389 [Drosophila yakuba]
gi|194181997|gb|EDW95608.1| GE25389 [Drosophila yakuba]
Length = 142
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 13/125 (10%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPV------RLSPNYPEPPANPTEDAANFAEQ 55
D ++QLQ+ +NQ A N G +Q+ + P R+ P P P ED A
Sbjct: 3 DRLTQLQDTVNQQAENFCNAIGVIQQTSFPSKFVNFERIGPQTPNS-CQPQEDYA----- 56
Query: 56 PKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKE 115
+L + + + AK D L+ +LP + E Q + L+ EN +DL+ ++ E
Sbjct: 57 -QLFAQLIARCAKDIDTLIESLPNEDSSIELQNSSLKRLEIENQETAKDLEEVVQKGELL 115
Query: 116 LKQVQ 120
L+++Q
Sbjct: 116 LEKMQ 120
>gi|194898297|ref|XP_001978768.1| GG12027 [Drosophila erecta]
gi|190650471|gb|EDV47726.1| GG12027 [Drosophila erecta]
Length = 142
Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 13/125 (10%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPV------RLSPNYPEPPANPTEDAANFAEQ 55
D ++QLQ+ +NQ A N G +Q+ + P R+ P P P ED A
Sbjct: 3 DRLTQLQDTVNQQAENFCNAIGVIQQTSFPSKFVNFERIGPQTPNS-CQPQEDYA----- 56
Query: 56 PKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKE 115
+L + + + AK D L+ +LP + E Q + L+ EN +DL+ ++ E
Sbjct: 57 -QLFAQLIARCAKDIDTLIESLPNEDSSIELQNSSLKRLEIENQQTARDLEEVVQKGELL 115
Query: 116 LKQVQ 120
L+++Q
Sbjct: 116 LEKMQ 120
>gi|351712211|gb|EHB15130.1| Mediator of RNA polymerase II transcription subunit 21
[Heterocephalus glaber]
Length = 99
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLS----PNYPEPPANPTEDAANFAEQPK 57
D ++QLQ+ +N + N FG LQ+ PP S + PANPTE E P+
Sbjct: 3 DRLTQLQDTVNSLVDQFCNAFGVLQQCGPPASFSNIQMAINKDQPANPTE------EYPQ 56
Query: 58 LMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAEL 94
L +A + +AAK D L+ +LP E Q + +L
Sbjct: 57 LFAALIARAAKD-DVLIDSLPSEESTAALQAASLYKL 92
>gi|350536303|ref|NP_001232707.1| putative SRB7 suppressor of RNA polymerase B variant 1 [Taeniopygia
guttata]
gi|197128437|gb|ACH44935.1| putative SRB7 suppressor of RNA polymerase B variant 1 [Taeniopygia
guttata]
Length = 144
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 10/138 (7%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLS----PNYPEPPANPTEDAANFAEQPK 57
D ++QLQ+ +N +A N G LQ+ PP S + NPTE+ A +
Sbjct: 3 DRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFSNIQTAINKDQGVNPTEEYA------Q 56
Query: 58 LMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELK 117
L +A + + AK D L+ +LP E Q + L+ EN L+ + + L+
Sbjct: 57 LFAALIARTAKDIDVLIDSLPSEESTAALQAASLYRLEEENHEASSRLEDAVYRGDVLLE 116
Query: 118 QVQELFSQAADNCLNLKK 135
++Q + A + L +
Sbjct: 117 KIQSALADIAQSQLKTRS 134
>gi|301787169|ref|XP_002929000.1| PREDICTED: mediator of RNA polymerase II transcription subunit
21-like [Ailuropoda melanoleuca]
gi|281352396|gb|EFB27980.1| hypothetical protein PANDA_019072 [Ailuropoda melanoleuca]
Length = 144
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 10/123 (8%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRL----SPNYPEPPANPTEDAANFAEQPK 57
D ++QLQ+ ++ +A +N G L+ +PP + + PANP ++ F
Sbjct: 3 DGLTQLQDVMHWLADRFWNAIGVLEHCSPPASFTNIQTAISKDQPANPKKEYVQF----- 57
Query: 58 LMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELK 117
+A + + AK D L+ + P E Q R+ +L+ EN L+ + + L+
Sbjct: 58 -FAAVIARTAKDTDVLIDSFPSEESTVALQAARLYKLEEENHEAATCLEDVVYGGDMLLE 116
Query: 118 QVQ 120
++Q
Sbjct: 117 KIQ 119
>gi|302673590|ref|XP_003026481.1| hypothetical protein SCHCODRAFT_62043 [Schizophyllum commune H4-8]
gi|300100164|gb|EFI91578.1| hypothetical protein SCHCODRAFT_62043 [Schizophyllum commune H4-8]
Length = 144
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 2/130 (1%)
Query: 1 MDIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAAN-FAEQPKLM 59
MD I+QLQ++I Q+ I + L +++SP P D + FA+ +
Sbjct: 8 MDRITQLQDEIQQLLNIMAQSITYLTTRVNFMQISPEIPVTKKKTKFDPPDVFAQNTTEL 67
Query: 60 SAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQV 119
LV+ AKQ + L+ +LP E EE Q +R+ L+SE ++ + + A QV
Sbjct: 68 VTDLVRKAKQIEYLIQSLPEPE-AEETQARRLQALESEMTQANEEYAKAVRRARNLHGQV 126
Query: 120 QELFSQAADN 129
L +N
Sbjct: 127 TALLDLVLEN 136
>gi|197128438|gb|ACH44936.1| putative SRB7 suppressor of RNA polymerase B variant 1 [Taeniopygia
guttata]
Length = 144
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 10/138 (7%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLS----PNYPEPPANPTEDAANFAEQPK 57
D ++QLQ+ +N +A N G LQ+ PP S + NPTE+ A +
Sbjct: 3 DRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFSNIQTAINKDQGVNPTEEYA------Q 56
Query: 58 LMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELK 117
L +A + + AK D L+ +LP E Q + L+ EN L+ + + L+
Sbjct: 57 LFAALIARTAKDIDVLIDSLPSEESTAALQAASLYRLEEENHEAAARLEEVVYRGDVLLE 116
Query: 118 QVQELFSQAADNCLNLKK 135
++Q + A + L +
Sbjct: 117 KIQSALADIAQSQLKTRS 134
>gi|158705872|sp|Q61BU1.2|MED21_CAEBR RecName: Full=Mediator of RNA polymerase II transcription subunit
21; AltName: Full=Mediator complex subunit 21
Length = 130
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 22/105 (20%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVR---LSPNYPEPPANPTEDAANFAEQPKL 58
D ++QLQ+ IN++A + N G LQ APP +S ++ E P + A FA
Sbjct: 3 DRMTQLQDMINEMASLMTNAIGVLQATAPPCEFDAISQDHEEEP-----NCAIFA----- 52
Query: 59 MSAALVKAAKQFDALVAALPLAEGG--EEAQLKRIAELQSENDAV 101
A++ K+AK + L+ + P+ G +E + K I +NDAV
Sbjct: 53 --ASIAKSAKNIEILIDSFPIEAGNMEDEVEQKMI-----QNDAV 90
>gi|195107744|ref|XP_001998468.1| GI23617 [Drosophila mojavensis]
gi|193915062|gb|EDW13929.1| GI23617 [Drosophila mojavensis]
Length = 142
Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 16/145 (11%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPE-----PPANP-TEDAANFAEQ 55
D ++QLQ+ +NQ A N G +Q+ + P + + N+ P NP ED A
Sbjct: 3 DRLTQLQDTVNQQAEHFCNAIGVIQQTSYPSKFA-NFDRTGSQTPVQNPPQEDYA----- 56
Query: 56 PKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKE 115
+L + + + AK D L+ +LP + E Q + L+ EN + L++ ++ E
Sbjct: 57 -QLFAQLIARCAKDIDTLIESLPNEDSSIELQNSSLKRLEIENQETAEQLEQVVQKGELL 115
Query: 116 LKQVQELFSQAADNCLNLK---KPN 137
L+++Q A + L+++ KPN
Sbjct: 116 LEKIQSALGDIAQSQLDMQITLKPN 140
>gi|391343424|ref|XP_003746010.1| PREDICTED: mediator of RNA polymerase II transcription subunit
21-like [Metaseiulus occidentalis]
Length = 141
Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 4/126 (3%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAANFAEQPKLMSA 61
D ++QLQ+ +N A N+ G LQ+ A P +PE A + + +L +
Sbjct: 3 DRLTQLQDLVNLQAENFCNSIGILQQFAQP----STFPEFEKTCKSTATSQEDYAQLFAT 58
Query: 62 ALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQE 121
+ + AK D L+ +LP E E Q + L+ EN+ L+ + E L +VQ+
Sbjct: 59 MIARTAKDIDVLIDSLPGEEAAPELQANNLQRLEIENNEAALRLREVVMRGESLLAEVQK 118
Query: 122 LFSQAA 127
S+ A
Sbjct: 119 ALSEIA 124
>gi|320582689|gb|EFW96906.1| Subunit of the RNA polymerase II mediator complex [Ogataea
parapolymorpha DL-1]
Length = 138
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 65/133 (48%), Gaps = 10/133 (7%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPN---YPEPPANP---TEDAANFAEQ 55
D ++QLQ ++Q++ + F + + ++ VRL+ P+P NP TE AN E
Sbjct: 3 DRLTQLQICLDQLSDMFFASLSYVDQNHVAVRLTEGDEMLPDPDHNPPSETEFKANLTE- 61
Query: 56 PKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKE 115
+++ ++ KQ ++ LP ++ QLKRI L E + + + L+ EK
Sbjct: 62 ---LTSDIILKTKQILTIIDTLPGVGVSKDEQLKRIENLSQELAEIERLKTQTLQRKEKL 118
Query: 116 LKQVQELFSQAAD 128
V +L QA++
Sbjct: 119 GSIVDDLIVQASE 131
>gi|196014980|ref|XP_002117348.1| hypothetical protein TRIADDRAFT_61323 [Trichoplax adhaerens]
gi|190580101|gb|EDV20187.1| hypothetical protein TRIADDRAFT_61323 [Trichoplax adhaerens]
Length = 172
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 24/150 (16%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVR-----------LSPNYPEP--------- 41
D +SQLQ+ +NQ+A ++ G LQ+ AP LS + +
Sbjct: 3 DRLSQLQDAVNQLAQHLCDSVGVLQQSAPLSYFDEFESHDRGLLSIQWMQTNQILYSNTV 62
Query: 42 ----PANPTEDAANFAEQPKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSE 97
NPT + N + + + + A+ D ++ +LP ++ Q K I LQ E
Sbjct: 63 SYLAVHNPTTNGENVENNLDVFATLITRTAQDIDYIITSLPDIRVSQQNQEKAIERLQEE 122
Query: 98 NDAVGQDLQRQLEAAEKELKQVQELFSQAA 127
N Q L + AE L +V+++ +Q A
Sbjct: 123 NAQARQQLVEAITRAEGVLLKVKQIKNQVA 152
>gi|47221755|emb|CAG08809.1| unnamed protein product [Tetraodon nigroviridis]
Length = 126
Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 10/119 (8%)
Query: 20 NTFGTLQRDAPPVRLSPNYP----EPPANPTEDAANFAEQPKLMSAALVKAAKQFDALVA 75
N G LQ+ APP S E PANPTE+ A +L + + + AK D L+
Sbjct: 7 NAIGVLQQCAPPASFSNGKTAINKEQPANPTEEYA------QLFATLIARTAKDVDVLID 60
Query: 76 ALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQELFSQAADNCLNLK 134
+LP E Q + +L+ EN L+ + + L+++Q + A + L +
Sbjct: 61 SLPSEESTSALQAASLRQLEDENHEAAARLEEVVYRGDMLLEKIQSALADIAQSQLRTR 119
>gi|195453657|ref|XP_002073882.1| GK14351 [Drosophila willistoni]
gi|194169967|gb|EDW84868.1| GK14351 [Drosophila willistoni]
Length = 140
Score = 42.0 bits (97), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 62/125 (49%), Gaps = 13/125 (10%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPE-----PPAN-PTEDAANFAEQ 55
D ++QLQ+ +NQ A N G +Q+ + P + + N+ P N P ED A
Sbjct: 3 DRLTQLQDTVNQQAEHFCNAIGVIQQTSYPSKFA-NFDRTGSQTPNQNQPQEDYA----- 56
Query: 56 PKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKE 115
+L + + + AK D L+ +LP + E Q + L+ EN ++L++ ++ E
Sbjct: 57 -QLFAQLIARCAKDIDTLIESLPNEDSSIELQNSSLKRLEVENQETAEELEQVVQKGELL 115
Query: 116 LKQVQ 120
L+++Q
Sbjct: 116 LEKIQ 120
>gi|330846075|ref|XP_003294879.1| hypothetical protein DICPUDRAFT_100091 [Dictyostelium purpureum]
gi|325074561|gb|EGC28590.1| hypothetical protein DICPUDRAFT_100091 [Dictyostelium purpureum]
Length = 147
Score = 41.6 bits (96), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 8/121 (6%)
Query: 1 MDIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAANFAEQPKLMS 60
MD+I+Q+Q++++ + + G LQRDAPP + + E P M+
Sbjct: 1 MDLITQVQDKLDHLLYVFGTCIGVLQRDAPPSSFT--------PQQQPPQEPWEVPPKMA 52
Query: 61 AALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQ 120
+++ +K ++ + LP + E+ Q + + L +E+ + Q A + LK V+
Sbjct: 53 IQVIETSKLIESYIEKLPGFDKTEDEQYEDLRNLNNESKEISAQHQMSRNEAIEVLKLVK 112
Query: 121 E 121
+
Sbjct: 113 D 113
>gi|256070935|ref|XP_002571797.1| hypothetical protein [Schistosoma mansoni]
gi|353228644|emb|CCD74815.1| hypothetical protein Smp_123930 [Schistosoma mansoni]
Length = 427
Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 50/112 (44%), Gaps = 7/112 (6%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSP-NYPEPPANPTEDAANFAEQP---- 56
D +++LQ+ IN A N G +Q+ A P S N+ A P E A QP
Sbjct: 49 DRLTELQDAINLQAENLCNAIGVIQQVAQPSFFSDFNWASRSAKP-EYQAFIQAQPTDDI 107
Query: 57 -KLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQR 107
+ + A+ AKQ DAL+ ALP E + Q + +L + G L R
Sbjct: 108 ARSFAVAISATAKQLDALIGALPEEEASADIQRATVHKLLEAYRSEGAKLAR 159
>gi|392596766|gb|EIW86088.1| hypothetical protein CONPUDRAFT_39859, partial [Coniophora puteana
RWD-64-598 SS2]
Length = 136
Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 56/101 (55%), Gaps = 6/101 (5%)
Query: 1 MDIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTE--DAANFAE--QP 56
MD I+QLQ++I Q+ I N+ L + +++S + P +E D + E Q
Sbjct: 8 MDRITQLQDEIQQLLTIMTNSLAYLTSRSNFLQVSEDIPVTKQRNSEKFDPPDVYEANQK 67
Query: 57 KLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSE 97
+L++ +VKA KQ + L+ +LP+ E EE Q KR+ LQ E
Sbjct: 68 ELVNDLIVKA-KQVEYLIQSLPIPE-PEEEQAKRLQALQEE 106
>gi|307167907|gb|EFN61284.1| Mediator of RNA polymerase II transcription subunit 21 [Camponotus
floridanus]
Length = 139
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 48 DAANFAEQPKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQR 107
D N+A L + + + AK D L+ +LP E +E Q+ ++ L+ EN G+ L+
Sbjct: 14 DIVNYA---ALFANLIARCAKDIDTLIESLPSEESSQELQVASLSRLEQENQQAGEQLEE 70
Query: 108 QLEAAEKELKQVQELFSQAADNCLNLKKP 136
+ E L+++Q A + L+++ P
Sbjct: 71 VVRQGEALLQRIQAALQDIAQSQLDMQNP 99
>gi|195062422|ref|XP_001996187.1| GH22363 [Drosophila grimshawi]
gi|193899682|gb|EDV98548.1| GH22363 [Drosophila grimshawi]
Length = 142
Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 13/125 (10%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPE-----PPANP-TEDAANFAEQ 55
D ++QLQ+ +NQ A N G +Q+ + P + + N+ P NP ED A
Sbjct: 3 DRLTQLQDTVNQQAEHFCNAIGVIQQTSYPSKFA-NFDRTGSQTPIQNPPQEDYA----- 56
Query: 56 PKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKE 115
+L + + + AK D L+ +LP + E Q + L+ EN + L+ ++ E
Sbjct: 57 -QLFAQLIARCAKDIDTLIESLPNEDSSIELQNSSLKRLEIENQETAEQLEHVVQKGELL 115
Query: 116 LKQVQ 120
L+++Q
Sbjct: 116 LEKIQ 120
>gi|110636561|ref|YP_676768.1| outer membrane integrity protein [Cytophaga hutchinsonii ATCC 33406]
gi|110279242|gb|ABG57428.1| membrane spanning protein, required for outer membrane integrity
[Cytophaga hutchinsonii ATCC 33406]
Length = 1038
Score = 40.4 bits (93), Expect = 0.26, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 51 NFAEQPK--LMSAAL--VKAAKQFDALVAALPLAEGGEEAQLKR-----IAELQSENDAV 101
NF E K L AA+ +K + Q + A + A+ EA+L++ AELQ + DA
Sbjct: 932 NFGEVDKTALKDAAISELKNSDQAKQVQAEIDKAKADAEAELQKQKDAAAAELQKQKDAA 991
Query: 102 GQDLQRQLEAAEKELKQVQELFSQ 125
+ Q+Q +AA+ ELK+ Q++ Q
Sbjct: 992 AAEFQKQKDAADAELKRQQQILEQ 1015
>gi|195388608|ref|XP_002052971.1| GJ23591 [Drosophila virilis]
gi|194151057|gb|EDW66491.1| GJ23591 [Drosophila virilis]
Length = 142
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 13/125 (10%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPAN------PTEDAANFAEQ 55
D ++QLQ+ +NQ A N G +Q+ + P + + N+ + P ED A
Sbjct: 3 DRLTQLQDTVNQQAEHFCNAIGVIQQTSYPSKFA-NFDRTGSQTPIQNPPQEDYA----- 56
Query: 56 PKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKE 115
+L + + + AK D L+ +LP + E Q + L+ EN + L++ ++ E
Sbjct: 57 -QLFAQLIARCAKDIDTLIESLPNEDSSIELQNCSLKRLEFENQETAEQLEQVVQKGELL 115
Query: 116 LKQVQ 120
L+++Q
Sbjct: 116 LEKIQ 120
>gi|290981778|ref|XP_002673608.1| predicted protein [Naegleria gruberi]
gi|284087193|gb|EFC40864.1| predicted protein [Naegleria gruberi]
Length = 129
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 6/122 (4%)
Query: 19 FNTFGTLQRDAPPVRLSPNYPE--PPANPTEDAANFAEQPKLMS----AALVKAAKQFDA 72
++ G LQRDAPP P + T A EQ + S LV A +F+
Sbjct: 2 VDSLGVLQRDAPPSITDYQLRNGLPMVSDTTKAVWTPEQLREQSEEAGKNLVAACLEFEK 61
Query: 73 LVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQELFSQAADNCLN 132
++ LP EE Q R+ + QS+N+ L+++++ AE L+ V +N L
Sbjct: 62 MLDELPTLIRSEEDQTNRLKDFQSQNENQTHLLKQKIDLAEDYLQIVSNSIEDITNNRLQ 121
Query: 133 LK 134
++
Sbjct: 122 VR 123
>gi|281352849|gb|EFB28433.1| hypothetical protein PANDA_005356 [Ailuropoda melanoleuca]
Length = 130
Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 10/112 (8%)
Query: 20 NTFGTLQRDAPPVRLS----PNYPEPPANPTEDAANFAEQPKLMSAALVKAAKQFDALVA 75
N G LQ+ PP S + PANPTE+ A +L +A + + AK D L+
Sbjct: 7 NAIGVLQQCGPPASFSNIQTAINKDQPANPTEEYA------QLFAALIARTAKDIDVLID 60
Query: 76 ALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQELFSQAA 127
+LP E Q + +L+ EN L+ + + L+++Q + A
Sbjct: 61 SLPSEESTAALQAASLYKLEEENHEAATCLEDVVYRGDMLLEKIQSALADIA 112
>gi|341878969|gb|EGT34904.1| hypothetical protein CAEBREN_23537 [Caenorhabditis brenneri]
Length = 130
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 12/121 (9%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAANFAEQPKLMSA 61
D ++QLQ+ INQ+A N G L+ APP E ED N A + +A
Sbjct: 3 DRMTQLQDMINQMATSMTNAIGVLKDTAPPCEFGAISQE-----LEDEPNCA----VFAA 53
Query: 62 ALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQE 121
+ + AK + L+ + P+ G E +++ LQ NDA+ + +L KE Q+ E
Sbjct: 54 EIARFAKHIEILIDSFPIETGDVEDEVES-KMLQ--NDAIHKQKVEELTDLVKESNQLVE 110
Query: 122 L 122
+
Sbjct: 111 I 111
>gi|380800991|gb|AFE72371.1| mediator of RNA polymerase II transcription subunit 21, partial
[Macaca mulatta]
Length = 128
Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 10/105 (9%)
Query: 20 NTFGTLQRDAPPVRLS----PNYPEPPANPTEDAANFAEQPKLMSAALVKAAKQFDALVA 75
N G LQ+ PP S + PANPTE+ A +L +A + + AK D L+
Sbjct: 5 NAIGVLQQCGPPASFSNIQTAINKDQPANPTEEYA------QLFAALIARTAKDIDVLID 58
Query: 76 ALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQ 120
+LP E Q + +L+ EN L+ + + L+++Q
Sbjct: 59 SLPSEESTAALQAASLYKLEEENHEAATCLEDVVYRGDMLLEKIQ 103
>gi|320167161|gb|EFW44060.1| hypothetical protein CAOG_02085 [Capsaspora owczarzaki ATCC 30864]
Length = 207
Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 10/127 (7%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPP-------VRLSPNYPEPPANPTEDAANFAE 54
D ++QLQ++I+Q+A + F + G L+ P L P P + FA+
Sbjct: 72 DRLTQLQDRISQMAEMLFTSVGVLKDFRPTDAASQTATILPAGAPAPSGMSLQQYEEFAQ 131
Query: 55 QPKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEK 114
M + + AK+ D L+ +LP E +L+ A L +N G + AE
Sbjct: 132 THASM---IARTAKEIDVLIDSLPEMHVDAEDELQMFANLHKQNADAGIAFGETVNLAEA 188
Query: 115 ELKQVQE 121
L V++
Sbjct: 189 HLTAVKQ 195
>gi|392571997|gb|EIW65169.1| hypothetical protein TRAVEDRAFT_159998 [Trametes versicolor
FP-101664 SS1]
Length = 147
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 4/100 (4%)
Query: 1 MDIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPA-NPTE-DAAN-FAEQPK 57
MD I+QLQ++I Q+ I ++ L A V++S + P A NP + DA + F K
Sbjct: 8 MDRITQLQDEIQQLLTIMSHSIAYLTSRANFVQVSADVPVTKARNPDKYDAPDAFEANKK 67
Query: 58 LMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSE 97
+ + L+ AKQ + L+ +LP EE Q++R+ L+ E
Sbjct: 68 ELVSDLIVKAKQVEYLIQSLP-EPDPEEEQVERLEALEQE 106
>gi|353236600|emb|CCA68591.1| hypothetical protein PIIN_02456 [Piriformospora indica DSM 11827]
Length = 129
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 50/100 (50%), Gaps = 4/100 (4%)
Query: 1 MDIISQLQEQINQIAGIA-FNTFGTLQR-DAPPV-RLSPNYPEPPANPTEDAANFAEQPK 57
MD +SQLQ+ I Q+ I + +QR D PV P Y P + + F E +
Sbjct: 13 MDKLSQLQDCIEQLLLIMKLSVVQLVQRTDFKPVAETIPIYKARPKDKVDSPQKFEENKR 72
Query: 58 LMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSE 97
+ A LV+ AKQ + L+ +LP E EE+Q R+ L E
Sbjct: 73 ELVADLVQKAKQIERLIDSLPPPE-PEESQAARLGALDDE 111
>gi|242025144|ref|XP_002432986.1| mediator of RNA polymerase II transcription subunit, putative
[Pediculus humanus corporis]
gi|212518495|gb|EEB20248.1| mediator of RNA polymerase II transcription subunit, putative
[Pediculus humanus corporis]
Length = 148
Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 4/138 (2%)
Query: 2 DIISQLQEQINQIAGIA---FNTFGTLQRDAPPVRLSPNYPEPPANPTEDAANFAEQPKL 58
D ++QLQ+ IN A A N+ G LQ+ A P + S P + E
Sbjct: 3 DRLTQLQDTINLNAVQAENFCNSIGILQQFAQPGKFSGFERSGSQTPQQGNQQAQEDYAQ 62
Query: 59 MSAALV-KAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELK 117
+ A L+ + AK D L+ +LP + E Q+ + L++EN L++ ++ E L+
Sbjct: 63 LFATLIARCAKDIDVLIESLPNEDSSTELQVASLRRLETENQEAADRLEQVVKKGELLLE 122
Query: 118 QVQELFSQAADNCLNLKK 135
Q+Q + A + L ++
Sbjct: 123 QIQSALADIAQSQLEMQH 140
>gi|331228192|ref|XP_003326763.1| hypothetical protein PGTG_08300 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309305753|gb|EFP82344.1| hypothetical protein PGTG_08300 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 189
Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 1 MDIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAA-----NFAEQ 55
MD I+QLQ+ I+ + I ++T L R+A +L+P+ P A P + +F +
Sbjct: 12 MDRITQLQDGIDNLVTIMYSTLSFLSRNANFKQLNPDIPITQAIPHPEGTIPPHESFNQN 71
Query: 56 PKLMSAALVKAAKQFDALVAALP 78
+ + ++ AKQ L++ LP
Sbjct: 72 CEELVQDFLRKAKQIQYLISILP 94
>gi|367045896|ref|XP_003653328.1| hypothetical protein THITE_2048755 [Thielavia terrestris NRRL 8126]
gi|347000590|gb|AEO66992.1| hypothetical protein THITE_2048755 [Thielavia terrestris NRRL 8126]
Length = 137
Score = 38.9 bits (89), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 7/103 (6%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPN-------YPEPPANPTEDAANFAE 54
DI++QLQE ++ + + F ++R + PN +P T D F
Sbjct: 3 DILTQLQEAMDTLCTMFIAGFYYVERHHDLEQFGPNDKIPDLKADQPKEVETLDPQIFQA 62
Query: 55 QPKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSE 97
++ LV A+ +ALV+ALP E E QL+ I +L+ E
Sbjct: 63 GQAEIATDLVNHARLIEALVSALPGLENSERDQLQMIQDLEEE 105
>gi|397585355|gb|EJK53247.1| hypothetical protein THAOC_27347 [Thalassiosira oceanica]
Length = 299
Score = 38.5 bits (88), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 63 LVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQEL 122
++ +K+ D LVA LP + ++ QL+RI EL + N AV +DL A+++ ++V++
Sbjct: 218 ILAKSKEVDDLVANLPGMDRKKDEQLRRIKELITSNHAVSRDLDEAYVTAKEKREKVRKA 277
Query: 123 FSQAADNCLNL 133
+ CL L
Sbjct: 278 LEVS--TCLAL 286
>gi|308483802|ref|XP_003104102.1| CRE-MDT-21 protein [Caenorhabditis remanei]
gi|308258410|gb|EFP02363.1| CRE-MDT-21 protein [Caenorhabditis remanei]
Length = 133
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 12/91 (13%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAANFAEQPKLMSA 61
D ++QLQ+ IN++A + N G LQ APP E ED N A + +A
Sbjct: 3 DRMTQLQDMINEMASLMTNAIGVLQATAPPCEFGTISQE-----LEDEPNCA----IFAA 53
Query: 62 ALVKAAKQFDA---LVAALPLAEGGEEAQLK 89
++ K+AK + L+ + P+ G E +++
Sbjct: 54 SIAKSAKNIEVASILIDSFPIEAGNMEQEVE 84
>gi|312071386|ref|XP_003138584.1| SRB protein [Loa loa]
gi|307766252|gb|EFO25486.1| SRB protein [Loa loa]
Length = 131
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 18/118 (15%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAANFAEQPKLMSA 61
D ++QLQ+ +N++A + N+ G L+ AP N T A E L +A
Sbjct: 3 DRLTQLQDLVNELANLMCNSIGVLRLTAPSCDF---------NGTSKALEDEENCGLFAA 53
Query: 62 ALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQV 119
+ AK + L+ +LP+ E A SE D+ ++ Q A +EL+Q
Sbjct: 54 TIAHTAKDIEILIDSLPIDEP---------AASNSEIDSSLLNMDEQRHRAARELEQT 102
>gi|170586760|ref|XP_001898147.1| SRB protein. [Brugia malayi]
gi|158594542|gb|EDP33126.1| SRB protein., putative [Brugia malayi]
Length = 131
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAANFAEQPKLMSA 61
D ++QLQ+ +N++A + N+ G L+ AP N T A E L +A
Sbjct: 3 DRLTQLQDLVNELANLMCNSIGVLRLTAPSCDF---------NGTSKALEDEENCGLFAA 53
Query: 62 ALVKAAKQFDALVAALPLAE 81
+ AK + L+ +LP+ E
Sbjct: 54 TIAHTAKDIEILIDSLPIDE 73
>gi|389750809|gb|EIM91882.1| hypothetical protein STEHIDRAFT_164310 [Stereum hirsutum FP-91666
SS1]
Length = 151
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 1 MDIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAAN---FAEQPK 57
MD I+QLQ++I + I +T L A ++S + P E + F K
Sbjct: 8 MDRITQLQDEIQNLMTIMSSTLAYLTSRADFAQVSSDIPVTKTRNAEKVDSEEVFNANKK 67
Query: 58 LMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSE 97
+ A L+ AKQ + L+ +LP E EE Q KR+ L+ E
Sbjct: 68 ELVADLMMKAKQVEYLIQSLPAPE-PEEEQAKRLQALEDE 106
>gi|449277558|gb|EMC85671.1| Mediator of RNA polymerase II transcription subunit 21 [Columba
livia]
Length = 142
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 8/126 (6%)
Query: 13 QIAGIAFNTFGTLQRDAPPVRLS----PNYPEPPANPTEDAANFAEQPKLMSAALVKAAK 68
Q+A N G LQ+ PP S + PANPTE ++A+ L +A + + AK
Sbjct: 10 QLADQFCNAIGVLQQCGPPASFSNIQTAINKDQPANPTE-GKSYAQ---LFAALIARTAK 65
Query: 69 QFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQELFSQAAD 128
D L+ +LP E Q + L+ EN L+ + + L+++Q + A
Sbjct: 66 DIDVLIDSLPSEESTAALQAASLFRLEEENHEAAARLEEVVFRGDMLLEKIQSALADIAQ 125
Query: 129 NCLNLK 134
+ L +
Sbjct: 126 SQLKTR 131
>gi|56756230|gb|AAW26290.1| SJCHGC09264 protein [Schistosoma japonicum]
Length = 153
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 56/137 (40%), Gaps = 7/137 (5%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSP-NYPEPPANPTEDAANFAEQP---- 56
D +++LQ+ IN A N G +Q+ A P S N+ P E A QP
Sbjct: 3 DRLTELQDAINLQAENLCNAIGVIQQVAQPSFFSDFNWASRSVKP-EYQAFIQSQPTDDI 61
Query: 57 -KLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKE 115
+ + A+ AKQ D L+ ALP E + Q + +L A G L R E
Sbjct: 62 ARSFAVAISATAKQLDTLIGALPEEEASADIQRATVHKLLEGYRAEGAKLARITTKLESR 121
Query: 116 LKQVQELFSQAADNCLN 132
L +V+ + A L
Sbjct: 122 LAEVRRCLTAIAQTQLT 138
>gi|169843208|ref|XP_001828334.1| hypothetical protein CC1G_12064 [Coprinopsis cinerea okayama7#130]
gi|116510575|gb|EAU93470.1| hypothetical protein CC1G_12064 [Coprinopsis cinerea okayama7#130]
Length = 165
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 4/100 (4%)
Query: 1 MDIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYP---EPPANPTEDAANFAEQPK 57
MD I+QLQ++I QI I + G L +++S P E + + F K
Sbjct: 8 MDRITQLQDEIQQILVIMSKSIGYLTTKPNFLQVSEAIPVTKERNKDKYDPPDVFEANQK 67
Query: 58 LMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSE 97
+ LV AKQ + L+ ALP E EE Q +R+ L++E
Sbjct: 68 ELVTDLVVKAKQIEYLINALPEPE-AEEVQARRLQTLENE 106
>gi|393247522|gb|EJD55029.1| hypothetical protein AURDEDRAFT_50088 [Auricularia delicata
TFB-10046 SS5]
Length = 132
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 49/105 (46%), Gaps = 14/105 (13%)
Query: 1 MDIISQLQEQINQIAGIAFNTFGTLQRD--------APPVRLSPNYPEPPANPTEDAANF 52
MD I+QLQ+ I Q+ I + L A P+ N P+ P AN
Sbjct: 8 MDRITQLQDGIEQLLTIMSRSIEYLHTRTNFKQVSAAIPISKQRN-PDKVHAPDVFQANR 66
Query: 53 AEQPKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSE 97
E + LV+ AKQ D L+ LP+ E EEAQ +R+ +++ E
Sbjct: 67 TE----LVTDLVRKAKQVDYLIGVLPVPE-SEEAQAERLEQMEKE 106
>gi|290563119|gb|ADD38953.1| Mediator of RNA polymerase II transcription subunit 21
[Lepeophtheirus salmonis]
Length = 138
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 2/134 (1%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAANFAEQPKLMSA 61
D ++QLQ+ +NQ A N+ G LQ+ A P P+ T ++ N + L +
Sbjct: 3 DRLTQLQDAVNQQADNFTNSLGILQQCANPSSF-PSLSHTKTTSTTNSTN-EDHTHLFAQ 60
Query: 62 ALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQE 121
+ + AK + L+ +LP E E Q +++L +EN + L+ + E L ++Q
Sbjct: 61 LVARTAKDIEVLIDSLPNEESSPELQNASLSKLDTENKDAARKLEEVVIKGESLLGEIQA 120
Query: 122 LFSQAADNCLNLKK 135
A L ++K
Sbjct: 121 ALHDIAQQQLEIQK 134
>gi|347967462|ref|XP_307937.5| AGAP002247-PA [Anopheles gambiae str. PEST]
gi|387912924|sp|Q7PTL0.5|MED21_ANOGA RecName: Full=Mediator of RNA polymerase II transcription subunit
21; AltName: Full=Mediator complex subunit 21
gi|333466284|gb|EAA03755.6| AGAP002247-PA [Anopheles gambiae str. PEST]
Length = 154
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 66/152 (43%), Gaps = 16/152 (10%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLS----------------PNYPEPPANP 45
D ++QLQ+ +NQ A N+ G LQ+ + P + +
Sbjct: 3 DRLTQLQDTVNQQAEHFCNSIGILQQCSVPSKFAGFERTGSQTPQQQVHQQQQLPQQQQQ 62
Query: 46 TEDAANFAEQPKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDL 105
+ + P+L S + + AK D L+ +LP E E Q++ + L++EN + L
Sbjct: 63 QQQPQQQEDFPQLFSTLISRCAKDIDTLIESLPSEESSIELQVQSLQRLEAENKESAEKL 122
Query: 106 QRQLEAAEKELKQVQELFSQAADNCLNLKKPN 137
+ + E L+++Q S A + L+++ +
Sbjct: 123 EEIVRKGELLLEKIQAALSDIAQSQLDMQYSS 154
>gi|403412223|emb|CCL98923.1| predicted protein [Fibroporia radiculosa]
Length = 132
Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 17/130 (13%)
Query: 1 MDIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAANFAEQP--KL 58
MD I+QLQ++I Q+ I N+ Y AN + A+ + P +
Sbjct: 8 MDRITQLQDEIQQLLTIMSNSVA--------------YLTSRANFLQKASFTSSIPNKRE 53
Query: 59 MSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQ 118
+ LV AKQ D L+ +LP E EE Q R+ L+ E D R + A+ +Q
Sbjct: 54 LVRDLVVKAKQIDYLIQSLPEPE-SEEVQAGRLECLEEEMTEANTDYVRAVNRAKHLHQQ 112
Query: 119 VQELFSQAAD 128
+ ++ D
Sbjct: 113 ISDVLRTMLD 122
>gi|345561112|gb|EGX44226.1| hypothetical protein AOL_s00210g15 [Arthrobotrys oligospora ATCC
24927]
Length = 131
Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 15/101 (14%)
Query: 2 DIISQLQEQINQIAGI---AFNTFGTLQ-----RDAPPVRLSPNYPEPPANPTEDAANFA 53
D ++QLQ+ I+Q+A I A GT + P VR P+PP F
Sbjct: 3 DRLTQLQDAIDQLATIFYCALRYVGTHHDFIPTHNEPKVRDETLQPDPPHI-------FR 55
Query: 54 EQPKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAEL 94
+ ++ LV KQ + L+A+LP E+ Q +R+ EL
Sbjct: 56 SSQQELARDLVLKTKQIEVLIASLPGIGVSEDDQKERLKEL 96
>gi|115372452|ref|ZP_01459761.1| hypothetical protein STIAU_2043 [Stigmatella aurantiaca DW4/3-1]
gi|310819560|ref|YP_003951918.1| hypothetical protein STAUR_2287 [Stigmatella aurantiaca DW4/3-1]
gi|115370665|gb|EAU69591.1| hypothetical protein STIAU_2043 [Stigmatella aurantiaca DW4/3-1]
gi|309392632|gb|ADO70091.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
Length = 389
Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 12/103 (11%)
Query: 4 ISQLQEQINQIAGIAFNTFGTLQRDAP----PVRLSPNYPEPP----ANPTEDAANFAEQ 55
+S+ QE+ +Q+ G + + GTL+R VRL EP + P +A +
Sbjct: 5 LSRYQERRHQLVGSSQSVGGTLERVGDVLRRSVRLGLEGVEPALRALSRPQLEAWLSGLK 64
Query: 56 PKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSEN 98
P + + L++AA++ + L EGGEEA+L R + ++ N
Sbjct: 65 PGELRSTLLRAAEE----AIEVALGEGGEEAELWRTSAMEGLN 103
>gi|390603778|gb|EIN13169.1| hypothetical protein PUNSTDRAFT_117070 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 146
Score = 35.8 bits (81), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 6/134 (4%)
Query: 1 MDIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYP-EPPANPTE-DAANFAEQPK- 57
MD ++QLQ++I Q+ I ++ L + ++SP P NP + D E K
Sbjct: 8 MDRVTQLQDEIQQLLQIMSSSIAYLTTRSNFAQVSPQIPITKQRNPEKFDPPEVLEANKK 67
Query: 58 -LMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKEL 116
L++ +VK AKQ + L+ +LP E EE+Q R+ L++E + L A+
Sbjct: 68 ELVTDLMVK-AKQIEFLIQSLPEPE-SEESQATRLQALENEMQEANAEYIHALSRAKDLH 125
Query: 117 KQVQELFSQAADNC 130
+QV ++ + D+
Sbjct: 126 RQVSDVLRRMLDDV 139
>gi|402580844|gb|EJW74793.1| hypothetical protein WUBG_14297 [Wuchereria bancrofti]
Length = 148
Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAANFAEQPKLMSA 61
D ++QLQ+ +N++A + N+ G L+ AP N T E L +A
Sbjct: 3 DRLTQLQDLVNELANLMCNSIGVLRLTAPSCDF---------NGTSKTLEDEENCGLFAA 53
Query: 62 ALVKAAKQFDALVAALPLAE 81
+ AK + L+ +LP+ E
Sbjct: 54 TIAHTAKDIEILIDSLPIDE 73
>gi|324524536|gb|ADY48429.1| Mediator of RNA polymerase II transcription subunit 21 [Ascaris
suum]
Length = 131
Score = 35.8 bits (81), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAANFAEQPKLMSA 61
D ++QLQ+ +N++A N+ G LQR APP N T + +L +
Sbjct: 3 DRLTQLQDLVNELAEQMCNSVGELQRLAPPCDF---------NSTSKELESEKNCELFAT 53
Query: 62 ALVKAAKQFDALVAALPLAE 81
+ AK + L+ +LP+ E
Sbjct: 54 NIAYIAKDIEILIDSLPIDE 73
>gi|225712338|gb|ACO12015.1| Mediator of RNA polymerase II transcription subunit 21
[Lepeophtheirus salmonis]
Length = 138
Score = 35.8 bits (81), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 2/119 (1%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAANFAEQPKLMSA 61
D ++QLQ+ +NQ A N+ G LQ+ A P P+ T ++ N + L +
Sbjct: 3 DRLTQLQDAVNQQADNFTNSLGILQQCANPSSF-PSLSHTKTTSTTNSTN-EDHTHLFAQ 60
Query: 62 ALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQ 120
+ + AK + L+ +LP E E Q +++L +EN + L+ + E L ++Q
Sbjct: 61 LVARTAKDIEVLIDSLPNEESSPELQNASLSKLDTENKDAARKLEEVVIKGESLLGEIQ 119
>gi|126133987|ref|XP_001383518.1| hypothetical protein PICST_30897 [Scheffersomyces stipitis CBS
6054]
gi|158705952|sp|A3LS24.1|MED21_PICST RecName: Full=Mediator of RNA polymerase II transcription subunit
21; AltName: Full=Mediator complex subunit 21
gi|126095667|gb|ABN65489.1| DNA-directed RNA polymerase II holoenzyme and kornberg s mediator
[Scheffersomyces stipitis CBS 6054]
Length = 164
Score = 35.8 bits (81), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 43/86 (50%)
Query: 42 PANPTEDAANFAEQPKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAV 101
P+ E +NF +S ++ ++Q L+ +LP E+QLK I +L E +V
Sbjct: 71 PSTQAEAESNFENTINELSTDIILKSRQISMLIDSLPGIGVSPESQLKIIDDLSKELQSV 130
Query: 102 GQDLQRQLEAAEKELKQVQELFSQAA 127
Q+ ++++ +K LK + L + A
Sbjct: 131 EQEQVKKIQEKDKLLKWCESLIVEVA 156
>gi|414864405|tpg|DAA42962.1| TPA: putative cyclin-T1 family protein isoform 1 [Zea mays]
gi|414864406|tpg|DAA42963.1| TPA: putative cyclin-T1 family protein isoform 2 [Zea mays]
gi|414864407|tpg|DAA42964.1| TPA: putative cyclin-T1 family protein isoform 3 [Zea mays]
gi|414864408|tpg|DAA42965.1| TPA: putative cyclin-T1 family protein isoform 4 [Zea mays]
Length = 493
Score = 35.8 bits (81), Expect = 6.2, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 37 NYPEPPANPTEDAANFAEQPKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQS 96
NY PP +D+AN +E P + SA+++ A K+ + L + + L R ++
Sbjct: 345 NYRVPPNEARDDSANSSEGPNV-SASMMDAMKKINKDKVKAALEKRRSKGDLSRKVDVMD 403
Query: 97 ENDAVGQDLQRQLEAAEKELKQVQE 121
++D + ++L+ +E A ++ K QE
Sbjct: 404 DDDLIERELEHGVELAVEDEKVKQE 428
>gi|409050321|gb|EKM59798.1| hypothetical protein PHACADRAFT_206021 [Phanerochaete carnosa
HHB-10118-sp]
Length = 415
Score = 35.4 bits (80), Expect = 7.1, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 10 QINQIAGIAFNTFGTLQRDAPPVRLSP-NYPEPPANPTEDAANFAEQPKLMSAALVKA-A 67
QI + G+ F TF T R +PP L+P + P P+E ++F + P +++ ++A
Sbjct: 281 QIEENMGVLFRTFYTYLRPSPPTHLTPRTFMILPKAPSECVSHFLQAPNSIASDEIEAHM 340
Query: 68 KQFDALVAALPLAEGGEEAQLKRIAELQSENDAV 101
FDA G AQL R L S + V
Sbjct: 341 GMFDAKTNDGYYELGLISAQLVRDVMLASRSGDV 374
>gi|169774613|ref|XP_001821774.1| mediator of RNA polymerase II transcription subunit 21 [Aspergillus
oryzae RIB40]
gi|238496811|ref|XP_002379641.1| RNA polymerase II transcription mediator complex subunit Srb7
[Aspergillus flavus NRRL3357]
gi|121802371|sp|Q2UF93.1|MED21_ASPOR RecName: Full=Mediator of RNA polymerase II transcription subunit
21; AltName: Full=Mediator complex subunit 21
gi|83769637|dbj|BAE59772.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220694521|gb|EED50865.1| RNA polymerase II transcription mediator complex subunit Srb7
[Aspergillus flavus NRRL3357]
gi|391869792|gb|EIT78985.1| mediator of RNA polymerase II transcription subunit 21 [Aspergillus
oryzae 3.042]
Length = 208
Score = 35.4 bits (80), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 36 PNYPEPPANPTEDAANFAEQPKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQ 95
PN P P +P FA + + ++ LV +Q + L++ LP + E Q +RI EL+
Sbjct: 107 PNLPPAPDSPR----TFASRQRELARDLVIKEQQIEYLISVLPGIDSSEAEQERRIKELE 162
Query: 96 SENDAVGQDLQ---RQLEAAEKELKQV 119
E + +D + R+L K+L+ V
Sbjct: 163 KELRSAEEDREQRVRELRKLRKKLENV 189
>gi|254294930|ref|YP_003060953.1| TetR family transcriptional regulator [Hirschia baltica ATCC 49814]
gi|254043461|gb|ACT60256.1| transcriptional regulator, TetR family [Hirschia baltica ATCC
49814]
Length = 223
Score = 35.4 bits (80), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 59 MSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVG 102
+S+ L+ +F + +AL GG A ++RI E +SEN+AVG
Sbjct: 142 LSSGLISGRFKFSDVESALLFILGGAGAMIRRILEAKSENEAVG 185
>gi|322710815|gb|EFZ02389.1| putative protein kinase [Metarhizium anisopliae ARSEF 23]
Length = 755
Score = 35.0 bits (79), Expect = 8.7, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 35/66 (53%)
Query: 69 QFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQELFSQAAD 128
++D A L + EAQ KRI EL+ ++ L++Q + E+++ ++Q L A +
Sbjct: 415 KWDRKFAGLIALQKENEAQRKRIMELEGKDQTYETRLEKQRQKHEQDISRLQTLLKNAEE 474
Query: 129 NCLNLK 134
C L+
Sbjct: 475 KCQRLE 480
>gi|344265921|ref|XP_003405029.1| PREDICTED: G-protein coupled receptor 98 [Loxodonta africana]
Length = 6302
Score = 35.0 bits (79), Expect = 8.9, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 27/57 (47%)
Query: 20 NTFGTLQRDAPPVRLSPNYPEPPANPTEDAANFAEQPKLMSAALVKAAKQFDALVAA 76
N FGTLQ AP VR++ N+ P N T FAE A + A D +A+
Sbjct: 2107 NAFGTLQLSAPIVRVAENHVGPIVNVTRTGGAFAEVSVKFKAVPITAIAGEDYSIAS 2163
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.311 0.127 0.344
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,986,942,322
Number of Sequences: 23463169
Number of extensions: 73471418
Number of successful extensions: 372199
Number of sequences better than 100.0: 525
Number of HSP's better than 100.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 337
Number of HSP's that attempted gapping in prelim test: 371383
Number of HSP's gapped (non-prelim): 962
length of query: 137
length of database: 8,064,228,071
effective HSP length: 102
effective length of query: 35
effective length of database: 9,965,952,129
effective search space: 348808324515
effective search space used: 348808324515
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 71 (32.0 bits)