BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032613
(137 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|C0LU16|MED21_ARATH Mediator of RNA polymerase II transcription subunit 21
OS=Arabidopsis thaliana GN=MED21 PE=1 SV=1
Length = 139
Score = 209 bits (533), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 111/138 (80%), Positives = 118/138 (85%), Gaps = 2/138 (1%)
Query: 1 MDIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAAN--FAEQPKL 58
MDIISQLQEQ+N IA I FN FGTLQRDAPPV+LSPNYPEPPA T F EQPK
Sbjct: 1 MDIISQLQEQVNTIAAITFNAFGTLQRDAPPVQLSPNYPEPPATTTVTDDATPFPEQPKQ 60
Query: 59 MSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQ 118
+SA LVKAAKQFDALVAALPL+EGGE AQLKRIAELQ END VGQ+LQ+QLEAAEKELKQ
Sbjct: 61 LSAGLVKAAKQFDALVAALPLSEGGEGAQLKRIAELQVENDLVGQELQKQLEAAEKELKQ 120
Query: 119 VQELFSQAADNCLNLKKP 136
VQELF QAADNCLN+KKP
Sbjct: 121 VQELFGQAADNCLNMKKP 138
>sp|Q2TBU8|MED21_BOVIN Mediator of RNA polymerase II transcription subunit 21 OS=Bos
taurus GN=MED21 PE=2 SV=1
Length = 144
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 10/138 (7%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLS----PNYPEPPANPTEDAANFAEQPK 57
D ++QLQ+ +N +A N G LQ+ PP S + PANPTE+ A +
Sbjct: 3 DRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFSNIQTAINKDQPANPTEEYA------Q 56
Query: 58 LMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELK 117
L +A + + AK D L+ +LP E Q + +L+ EN L+ + + L+
Sbjct: 57 LFAALIARTAKDIDVLIDSLPSEESTAALQAASLYKLEEENHEAATSLEDVVYRGDMLLE 116
Query: 118 QVQELFSQAADNCLNLKK 135
++Q + A + L +
Sbjct: 117 KIQSALADIAQSQLKTRS 134
>sp|Q6BER6|MED21_CAEEL Mediator of RNA polymerase II transcription subunit 21
OS=Caenorhabditis elegans GN=mdt-21 PE=1 SV=1
Length = 130
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 25/128 (19%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPEPPANPTEDAANFAEQPKLMSA 61
D ++QLQ+ IN++AG+ N G LQ APP E ED N A + +A
Sbjct: 3 DRMTQLQDMINEMAGLMTNAIGVLQATAPPCEFGAISQE-----LEDEPNCA----IFAA 53
Query: 62 ALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQE 121
+ KAAK + L+ + P+ G +EA+++ ++ ++ EK+ ++V E
Sbjct: 54 GIAKAAKNIEILIDSFPIEAGNQEAEVE----------------EKMIKNDEKQREKVNE 97
Query: 122 LFSQAADN 129
L D+
Sbjct: 98 LVGLVGDS 105
>sp|Q9CQ39|MED21_MOUSE Mediator of RNA polymerase II transcription subunit 21 OS=Mus
musculus GN=Med21 PE=1 SV=1
Length = 144
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 10/130 (7%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLS----PNYPEPPANPTEDAANFAEQPK 57
D ++QLQ+ +N +A N G LQ+ PP S + PANPTE E +
Sbjct: 3 DRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFSNIQTAINKDQPANPTE------EYAQ 56
Query: 58 LMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELK 117
L +A + + AK D L+ +LP E Q + +L+ EN L+ + + L+
Sbjct: 57 LFAALIARTAKDIDVLIDSLPSEESTAALQAASLYKLEEENHEAATCLEDVVYRGDMLLE 116
Query: 118 QVQELFSQAA 127
++Q + A
Sbjct: 117 KIQSALADIA 126
>sp|Q4R6N3|MED21_MACFA Mediator of RNA polymerase II transcription subunit 21 OS=Macaca
fascicularis GN=MED21 PE=2 SV=1
Length = 144
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 10/130 (7%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLS----PNYPEPPANPTEDAANFAEQPK 57
D ++QLQ+ +N +A N G LQ+ PP S + PANPTE+ A +
Sbjct: 3 DRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFSNIQTAINKDQPANPTEEYA------Q 56
Query: 58 LMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELK 117
L +A + + AK D L+ +LP E Q + +L+ EN L+ + + L+
Sbjct: 57 LFAALIARTAKDIDVLIDSLPSEESTAALQAASLYKLEEENHEAATCLEDVVYRGDMLLE 116
Query: 118 QVQELFSQAA 127
++Q + A
Sbjct: 117 KIQSALADIA 126
>sp|Q7ZTI5|MED21_DANRE Mediator of RNA polymerase II transcription subunit 21 OS=Danio
rerio GN=med21 PE=2 SV=1
Length = 145
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 10/138 (7%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLS----PNYPEPPANPTEDAANFAEQPK 57
D ++QLQ+ +N +A N G LQ+ APP S + P+NPTE+ A +
Sbjct: 3 DRLTQLQDAVNSLADQFCNAIGVLQQCAPPASFSNIQTAINKDQPSNPTEEYA------Q 56
Query: 58 LMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELK 117
L +A + + AK D L+ +LP E Q + +L+ EN L+ + + L+
Sbjct: 57 LFAALIARTAKDVDVLIDSLPSEESTAALQAASLRQLEEENQEAAARLEEVVYRGDALLE 116
Query: 118 QVQELFSQAADNCLNLKK 135
++Q + A + L +
Sbjct: 117 KIQTALADIAQSQLRTRS 134
>sp|Q16RX1|MED21_AEDAE Mediator of RNA polymerase II transcription subunit 21 OS=Aedes
aegypti GN=MED21 PE=3 SV=1
Length = 141
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 12/138 (8%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPE-----PPANPTEDAANFAEQP 56
D ++QLQ+ +NQ A N+ G LQ+ + P + P + P N ED A
Sbjct: 3 DRLTQLQDTVNQQAEHFCNSIGILQQCSVPSKF-PGFERTGSQTPQQNQQEDYA------ 55
Query: 57 KLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKEL 116
+L S + + AK D L+ +LP E E Q++ + L+ EN + L+ + E L
Sbjct: 56 QLFSTLISRCAKDIDTLIESLPSEESSIELQVQALKRLEIENQESAEKLEEVVRKGELLL 115
Query: 117 KQVQELFSQAADNCLNLK 134
+++Q S A + L+++
Sbjct: 116 EKIQAALSDIAQSQLDMQ 133
>sp|Q13503|MED21_HUMAN Mediator of RNA polymerase II transcription subunit 21 OS=Homo
sapiens GN=MED21 PE=1 SV=1
Length = 144
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 10/130 (7%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRL----SPNYPEPPANPTEDAANFAEQPK 57
D ++QLQ+ +N +A N G LQ+ PP + + PANPTE+ A +
Sbjct: 3 DRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFNNIQTAINKDQPANPTEEYA------Q 56
Query: 58 LMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELK 117
L +A + + AK D L+ +LP E Q + +L+ EN L+ + + L+
Sbjct: 57 LFAALIARTAKDIDVLIDSLPSEESTAALQAASLYKLEEENHEAATCLEDVVYRGDMLLE 116
Query: 118 QVQELFSQAA 127
++Q + A
Sbjct: 117 KIQSALADIA 126
>sp|Q9W5P1|MED21_DROME Mediator of RNA polymerase II transcription subunit 21
OS=Drosophila melanogaster GN=MED21 PE=1 SV=1
Length = 142
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 13/125 (10%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPV------RLSPNYPEPPANPTEDAANFAEQ 55
D ++QLQ+ +NQ A N G +Q+ + P R+ P P P P ED A
Sbjct: 3 DRLTQLQDTVNQQAEHFCNAIGVIQQTSLPSKFVNFERIGPQTP-IPCPPQEDYA----- 56
Query: 56 PKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKE 115
+L + + + AK D L+ +LP + E Q + L+ EN +DL+ ++ E
Sbjct: 57 -QLFAQLIARCAKDIDTLIESLPNEDSSIELQNSSLKRLEIENQGTARDLEEVVQKGELL 115
Query: 116 LKQVQ 120
L+++Q
Sbjct: 116 LEKMQ 120
>sp|Q5RE46|MED21_PONAB Mediator of RNA polymerase II transcription subunit 21 OS=Pongo
abelii GN=MED21 PE=2 SV=1
Length = 144
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 10/123 (8%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLS----PNYPEPPANPTEDAANFAEQPK 57
D ++QLQ+ +N +A N G LQ+ PP S + PAN TE E +
Sbjct: 3 DRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFSNIQTAINKDQPANSTE------EYAQ 56
Query: 58 LMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELK 117
L +A + + AK D L+ +LP E Q + +L+ EN L+ + + L+
Sbjct: 57 LFAALIARTAKDIDVLIDSLPSEESTAALQAASLYKLEEENHEAATCLEDVVYRGDMLLE 116
Query: 118 QVQ 120
++Q
Sbjct: 117 KIQ 119
>sp|Q61BU1|MED21_CAEBR Mediator of RNA polymerase II transcription subunit 21
OS=Caenorhabditis briggsae GN=mdt-21 PE=3 SV=2
Length = 130
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 22/105 (20%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVR---LSPNYPEPPANPTEDAANFAEQPKL 58
D ++QLQ+ IN++A + N G LQ APP +S ++ E P + A FA
Sbjct: 3 DRMTQLQDMINEMASLMTNAIGVLQATAPPCEFDAISQDHEEEP-----NCAIFA----- 52
Query: 59 MSAALVKAAKQFDALVAALPLAEGG--EEAQLKRIAELQSENDAV 101
A++ K+AK + L+ + P+ G +E + K I +NDAV
Sbjct: 53 --ASIAKSAKNIEILIDSFPIEAGNMEDEVEQKMI-----QNDAV 90
>sp|Q54HN4|MED21_DICDI Putative mediator of RNA polymerase II transcription subunit 21
OS=Dictyostelium discoideum GN=med21 PE=3 SV=1
Length = 197
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 1 MDIISQLQEQINQIAGIAFNTFGTLQRDAPP 31
MD+I+QLQ++++ + + G LQRDAPP
Sbjct: 1 MDLITQLQDKLDHLLYVFGTCIGVLQRDAPP 31
>sp|Q7PTL0|MED21_ANOGA Mediator of RNA polymerase II transcription subunit 21 OS=Anopheles
gambiae GN=MED21 PE=3 SV=5
Length = 154
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 66/152 (43%), Gaps = 16/152 (10%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLS----------------PNYPEPPANP 45
D ++QLQ+ +NQ A N+ G LQ+ + P + +
Sbjct: 3 DRLTQLQDTVNQQAEHFCNSIGILQQCSVPSKFAGFERTGSQTPQQQVHQQQQLPQQQQQ 62
Query: 46 TEDAANFAEQPKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDL 105
+ + P+L S + + AK D L+ +LP E E Q++ + L++EN + L
Sbjct: 63 QQQPQQQEDFPQLFSTLISRCAKDIDTLIESLPSEESSIELQVQSLQRLEAENKESAEKL 122
Query: 106 QRQLEAAEKELKQVQELFSQAADNCLNLKKPN 137
+ + E L+++Q S A + L+++ +
Sbjct: 123 EEIVRKGELLLEKIQAALSDIAQSQLDMQYSS 154
>sp|A3LS24|MED21_PICST Mediator of RNA polymerase II transcription subunit 21
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=SRB7 PE=3 SV=1
Length = 164
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 43/86 (50%)
Query: 42 PANPTEDAANFAEQPKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAV 101
P+ E +NF +S ++ ++Q L+ +LP E+QLK I +L E +V
Sbjct: 71 PSTQAEAESNFENTINELSTDIILKSRQISMLIDSLPGIGVSPESQLKIIDDLSKELQSV 130
Query: 102 GQDLQRQLEAAEKELKQVQELFSQAA 127
Q+ ++++ +K LK + L + A
Sbjct: 131 EQEQVKKIQEKDKLLKWCESLIVEVA 156
>sp|Q2UF93|MED21_ASPOR Mediator of RNA polymerase II transcription subunit 21
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=srb7 PE=3 SV=1
Length = 208
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 36 PNYPEPPANPTEDAANFAEQPKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQ 95
PN P P +P FA + + ++ LV +Q + L++ LP + E Q +RI EL+
Sbjct: 107 PNLPPAPDSPR----TFASRQRELARDLVIKEQQIEYLISVLPGIDSSEAEQERRIKELE 162
Query: 96 SENDAVGQDLQ---RQLEAAEKELKQV 119
E + +D + R+L K+L+ V
Sbjct: 163 KELRSAEEDREQRVRELRKLRKKLENV 189
>sp|A1C712|MED21_ASPCL Mediator of RNA polymerase II transcription subunit 21
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=srb7 PE=3 SV=1
Length = 189
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 36 PNYPEPPANPTEDAANFAEQPKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQ 95
PN P P +P FA + + ++ L+ +Q + L++ LP + E Q KRI EL+
Sbjct: 88 PNLPPAPDSPR----TFASRQRELARDLIIKEQQIEYLISVLPGIDSSEAEQEKRIRELE 143
Query: 96 SENDAVGQDLQ---RQLEAAEKELKQV 119
+E V ++ + R+L + L++V
Sbjct: 144 AELRGVEEEREAKIRELRTLGRTLERV 170
>sp|Q8WXG9|GPR98_HUMAN G-protein coupled receptor 98 OS=Homo sapiens GN=GPR98 PE=1 SV=2
Length = 6306
Score = 32.3 bits (72), Expect = 0.81, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 9 EQINQIAGIAFN-TFGTLQRDAPPVRLSPNYPEPPANPTEDAANFAEQPKLMSAALVKAA 67
E I Q+ IA + FGTLQ AP VR++ N+ P N T FA+ A + A
Sbjct: 2103 ETIAQLIIIANDDAFGTLQLSAPIVRVAENHVGPIINVTRTGGAFADVSVKFKAVPITAI 2162
Query: 68 KQFDALVAA 76
D +A+
Sbjct: 2163 AGEDYSIAS 2171
>sp|P47822|MED21_YEAST Mediator of RNA polymerase II transcription subunit 21
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SRB7 PE=1 SV=1
Length = 140
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 63/139 (45%), Gaps = 8/139 (5%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYPE-----PPANPTEDAANFAEQP 56
D ++QLQ ++Q+ T + ++ RL+ N P+ P E+ +N ++
Sbjct: 3 DRLTQLQICLDQMTEQFCATLNYIDKNHGFERLTVNEPQMSDKHATVVPPEEFSNTIDE- 61
Query: 57 KLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKEL 116
+S ++ +Q + L+ +LP + E QL++I LQ + V + ++ EK L
Sbjct: 62 --LSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLL 119
Query: 117 KQVQELFSQAADNCLNLKK 135
+ V L D N KK
Sbjct: 120 RHVDSLIEDFVDGIANSKK 138
>sp|Q7S8C2|MED21_NEUCR Mediator of RNA polymerase II transcription subunit 21
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=srb-7 PE=3 SV=1
Length = 137
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 9/121 (7%)
Query: 2 DIISQLQEQINQIAGIAFNTFGTLQRDAPPVRLSPNYP-------EPPANPTEDAANFAE 54
D +SQLQE ++Q+ T+ + R SP +PP T F
Sbjct: 3 DRLSQLQEAVDQLMEQFIATYFYIDRHHDLKTFSPKDTIAPSKADQPPEVDTLPPDVFQA 62
Query: 55 QPKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEK 114
++ L+ +Q + L+++LP + E+ QL+ I EL+ E + + QRQ EK
Sbjct: 63 GQLELARDLITREQQIEYLISSLPGLDNSEQDQLQSIKELEEELNVAEK--QRQEAVKEK 120
Query: 115 E 115
+
Sbjct: 121 D 121
>sp|Q4X0I5|MED21_ASPFU Mediator of RNA polymerase II transcription subunit 21
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=srb7 PE=3 SV=1
Length = 207
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 8/97 (8%)
Query: 36 PNYPEPPANPTEDAANFAEQPKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQ 95
PN P P + T FA + + ++ L+ +Q + L++ LP + E Q KRI EL+
Sbjct: 107 PNLPAPDSPRT-----FASRQRELARDLIIKEQQIEYLISVLPGIDSSEAEQEKRIRELE 161
Query: 96 SENDAVGQDLQRQLEAAE-KELKQVQELFSQAADNCL 131
E V ++ R+L+ E K L++ E A + L
Sbjct: 162 GELRQVEEE--RELKMRELKRLRRTLENVLTAVETGL 196
>sp|Q6BQ63|MED21_DEBHA Mediator of RNA polymerase II transcription subunit 21
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=SRB7 PE=3 SV=1
Length = 173
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 42/86 (48%)
Query: 42 PANPTEDAANFAEQPKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAV 101
P+ E +NF +S ++ ++Q L+ +LP E+QL + +L + + V
Sbjct: 80 PSAKAEAESNFENTINELSTDIILKSRQITMLIDSLPGIGVSPESQLNMVEDLAKQLEEV 139
Query: 102 GQDLQRQLEAAEKELKQVQELFSQAA 127
++ +++E +K LK + L + A
Sbjct: 140 EKERIKKIEEKDKLLKWCESLIVEVA 165
>sp|Q9EP71|RAI14_MOUSE Ankycorbin OS=Mus musculus GN=Rai14 PE=1 SV=1
Length = 979
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
Query: 103 QDLQRQLEAAEKELKQVQ-ELFSQAADN-CLN 132
DLQ++LE++E E KQ+Q EL SQ D CLN
Sbjct: 440 HDLQKRLESSEAEKKQLQDELQSQRTDTLCLN 471
>sp|A2QC41|MED21_ASPNC Mediator of RNA polymerase II transcription subunit 21
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=srb7 PE=3 SV=2
Length = 196
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 39 PEPPANPTEDA-ANFAEQPKLMSAALVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSE 97
P+ P D+ A FA + + ++ LV +Q + L++ LP + E Q +RI EL+ E
Sbjct: 100 PDGEGLPAPDSPATFAARQRELARDLVIKEQQIEYLISVLPGIDSSEAEQERRIRELEGE 159
>sp|Q5U312|RAI14_RAT Ankycorbin OS=Rattus norvegicus GN=Rai14 PE=2 SV=2
Length = 978
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 103 QDLQRQLEAAEKELKQVQ-ELFSQAAD-NCLN 132
DLQ++LE +E E KQ+Q EL SQ D CLN
Sbjct: 438 HDLQKRLETSEAEKKQLQDELQSQRTDTTCLN 469
>sp|Q9P0K7|RAI14_HUMAN Ankycorbin OS=Homo sapiens GN=RAI14 PE=1 SV=2
Length = 980
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 31/45 (68%), Gaps = 6/45 (13%)
Query: 90 RIAELQSENDAVGQDLQRQLEAAEKELKQVQ-ELFSQAAD-NCLN 132
RI +LQ + QDLQ++LE++E E KQ+Q EL S+ A+ CLN
Sbjct: 430 RIQQLQE----ILQDLQKRLESSEAERKQLQVELQSRRAELVCLN 470
>sp|Q6GQX2|NCK5L_MOUSE Nck-associated protein 5-like OS=Mus musculus GN=Nckap5l PE=2 SV=1
Length = 1323
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 88 LKRIAELQSENDAVGQDLQRQLEAAEKELKQVQELFSQAADN-------CLNLKK 135
L R+ EL++EN A+ Q + Q E E+ L +V QA N C+ LKK
Sbjct: 30 LHRLRELEAENSALAQANENQRETYERCLDEVANHVVQALLNQKDLREECIKLKK 84
>sp|Q9HCH0|NCK5L_HUMAN Nck-associated protein 5-like OS=Homo sapiens GN=NCKAP5L PE=1 SV=2
Length = 1330
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 88 LKRIAELQSENDAVGQDLQRQLEAAEKELKQVQELFSQAADN-------CLNLKK 135
L R+ EL++EN A+ Q + Q E E+ L +V QA N C+ LKK
Sbjct: 30 LHRLRELEAENSALAQANENQRETYERCLDEVANHVVQALLNQKDLREECIKLKK 84
>sp|Q6C5U8|MED21_YARLI Mediator of RNA polymerase II transcription subunit 21 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=SRB7 PE=3 SV=1
Length = 140
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%)
Query: 63 LVKAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQEL 122
LV ++Q D L+ +LP EE Q+++I +LQ E + Q + ++ ++ L+ EL
Sbjct: 65 LVVKSQQIDYLIDSLPGIGSSEEHQMQQIEKLQKELEHYDQVTEDVIKEKDELLEHCDEL 124
Query: 123 FSQAA 127
+ A
Sbjct: 125 ILKLA 129
>sp|Q6PEC1|TBCA_RAT Tubulin-specific chaperone A OS=Rattus norvegicus GN=Tbca PE=1 SV=1
Length = 108
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 65 KAAKQFDALVAALPLAEGGEEAQLKRIAELQSENDAVGQDLQRQLEAAEKELKQVQE 121
K AKQ + + + AE GE +K+ AE+ E+ + D QR+LEAA +L+Q+ E
Sbjct: 28 KEAKQQEEKIEKMK-AEDGENYAIKKQAEILQESRMMIPDCQRRLEAAYTDLRQILE 83
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.127 0.344
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,714,853
Number of Sequences: 539616
Number of extensions: 1769195
Number of successful extensions: 9064
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 114
Number of HSP's that attempted gapping in prelim test: 8856
Number of HSP's gapped (non-prelim): 310
length of query: 137
length of database: 191,569,459
effective HSP length: 102
effective length of query: 35
effective length of database: 136,528,627
effective search space: 4778501945
effective search space used: 4778501945
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)