Query 032614
Match_columns 137
No_of_seqs 110 out of 653
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 03:42:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032614.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032614hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1725 Protein involved in me 100.0 2.3E-32 5E-37 208.5 9.3 109 16-124 52-160 (186)
2 PF03134 TB2_DP1_HVA22: TB2/DP 100.0 5.7E-32 1.2E-36 186.2 10.2 93 19-111 2-94 (94)
3 KOG1726 HVA22/DP1 gene product 100.0 1E-31 2.2E-36 210.0 11.3 113 22-134 2-116 (225)
4 COG5052 YOP1 Protein involved 99.9 4.2E-23 9.1E-28 155.9 11.8 107 24-130 61-168 (186)
5 KOG1726 HVA22/DP1 gene product 76.3 15 0.00034 29.2 7.1 78 47-124 96-173 (225)
6 PF02453 Reticulon: Reticulon; 57.7 3.4 7.4E-05 30.0 0.0 21 111-131 149-169 (169)
7 PF10067 DUF2306: Predicted me 51.3 40 0.00086 23.0 4.6 55 2-56 21-77 (103)
8 PF06596 PsbX: Photosystem II 48.0 34 0.00073 19.9 3.1 35 13-47 1-35 (39)
9 PRK06553 lipid A biosynthesis 42.7 1.8E+02 0.0039 23.5 8.7 76 50-133 19-95 (308)
10 CHL00114 psbX photosystem II p 39.6 10 0.00022 22.1 0.1 34 13-46 1-34 (39)
11 PRK13707 conjugal transfer pil 36.0 1.3E+02 0.0029 20.7 5.3 27 35-61 55-81 (101)
12 PF14975 DUF4512: Domain of un 33.4 25 0.00055 24.0 1.3 14 101-114 13-26 (88)
13 KOG1792 Reticulon [Intracellul 30.4 2.8E+02 0.006 22.0 13.0 79 51-134 126-212 (230)
14 TIGR02893 spore_yabQ spore cor 29.3 2.2E+02 0.0048 20.5 10.9 94 28-133 18-112 (130)
15 PF09726 Macoilin: Transmembra 26.7 1.4E+02 0.003 27.6 5.2 58 51-108 28-113 (697)
16 COG2928 Uncharacterized conser 26.1 2.9E+02 0.0062 22.1 6.2 20 52-71 20-39 (222)
17 PF07178 TraL: TraL protein; 23.2 2.4E+02 0.0052 18.9 5.0 27 35-61 49-75 (95)
18 KOG0860 Synaptobrevin/VAMP-lik 23.1 1E+02 0.0023 22.1 3.0 26 111-136 31-56 (116)
19 PF14837 INTS5_N: Integrator c 21.2 3.3E+02 0.0071 21.5 5.7 55 81-135 26-97 (213)
No 1
>KOG1725 consensus Protein involved in membrane traffic (YOP1/TB2/DP1/HVA22 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.3e-32 Score=208.52 Aligned_cols=109 Identities=38% Similarity=0.783 Sum_probs=103.3
Q ss_pred hhhHHHHHHhhhhhhccchHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHhcCC
Q 032614 16 IGSNIVVRTACCSVGTILPVYSTFKAIESKDENEKQKWLVYWAVYGSFSIAEMFADKILCWFPLYHHVKFAFLVWLQLPS 95 (137)
Q Consensus 16 ~~~~~~~~~~~~~ig~~yPay~S~k~l~~~~~~~~~~wL~YWiv~~~~~~~E~~~~~ii~~iPfY~~~Kl~fliwL~~P~ 95 (137)
+..|-+++++|+++|++||+|+|++++|+++++|+++||+||++||+++++|...+.+++|+|+||++|.+|++|+..|+
T Consensus 52 l~~g~~~~l~cn~ig~~yP~y~Sv~aIes~~k~dD~~wL~YWivys~lslie~~~~~il~~iP~y~~~K~~fl~~l~lP~ 131 (186)
T KOG1725|consen 52 LLFGSGGPLLCNLIGFLYPAYASVKAIESPSKDDDTQWLTYWIVYSILSLVEFFSVAILSWIPFYWYAKLIFLLWLVLPQ 131 (186)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhccC
Confidence 44456679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHhhhhhhhhchHHHHHHHHH
Q 032614 96 TNGAKYFYMSRLRPFLLRHQARLDQILES 124 (137)
Q Consensus 96 ~~GA~~lY~~~i~P~l~~~e~~ID~~l~~ 124 (137)
++||..+|++.++|++.+++.++|+..+.
T Consensus 132 ~~Ga~~iY~~~vrp~~~~~~~~~~~~~~~ 160 (186)
T KOG1725|consen 132 FNGAAIIYNHIVRPFFLKHSREIDDIEDA 160 (186)
T ss_pred CCCceeeechhhhhhhhhhhhhhhhhhhc
Confidence 99999999999999999999999987664
No 2
>PF03134 TB2_DP1_HVA22: TB2/DP1, HVA22 family; InterPro: IPR004345 This family includes members from a wide variety of eukaryotes. It includes the TB2/DP1 (deleted in polyposis) protein which in human is deleted in severe forms of familial adenomatous polyposis, an autosomal dominant oncological inherited disease. The family also includes the plant protein of known similarity to TB2/DP1, the HVA22 abscisic acid-induced protein (e.g. Q07764 from SWISSPROT), which is thought to be a regulatory protein.
Probab=99.97 E-value=5.7e-32 Score=186.18 Aligned_cols=93 Identities=47% Similarity=1.019 Sum_probs=90.3
Q ss_pred HHHHHHhhhhhhccchHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHhcCCCCc
Q 032614 19 NIVVRTACCSVGTILPVYSTFKAIESKDENEKQKWLVYWAVYGSFSIAEMFADKILCWFPLYHHVKFAFLVWLQLPSTNG 98 (137)
Q Consensus 19 ~~~~~~~~~~ig~~yPay~S~k~l~~~~~~~~~~wL~YWiv~~~~~~~E~~~~~ii~~iPfY~~~Kl~fliwL~~P~~~G 98 (137)
|++++++|+.+|++||+|+|+|+++++++++.++|++||+++|+++++|...+.+++|+|+|+++|+++++||.+|+++|
T Consensus 2 ~~~~~~l~~~i~~~yP~~~s~kal~~~~~~~~~~wL~YWiv~~~~~~~e~~~~~~l~~iP~y~~~K~~~~~wL~~p~~~G 81 (94)
T PF03134_consen 2 GFIARLLCNLIGILYPAYKSFKALKSKDKKDLKQWLTYWIVYGLFTLFESFLDFILSWIPFYYEFKLLFLVWLQLPQFQG 81 (94)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHcCCCCc
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhh
Q 032614 99 AKYFYMSRLRPFL 111 (137)
Q Consensus 99 A~~lY~~~i~P~l 111 (137)
|+++|+++++|++
T Consensus 82 a~~iy~~~i~P~~ 94 (94)
T PF03134_consen 82 AEYIYDKFIRPFL 94 (94)
T ss_pred HHHHHHHHccccC
Confidence 9999999999974
No 3
>KOG1726 consensus HVA22/DP1 gene product-related proteins [Defense mechanisms]
Probab=99.97 E-value=1e-31 Score=209.97 Aligned_cols=113 Identities=36% Similarity=0.805 Sum_probs=106.1
Q ss_pred HHHhhhhhhccchHHHHHHHhhc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHhcCCCCcH
Q 032614 22 VRTACCSVGTILPVYSTFKAIES--KDENEKQKWLVYWAVYGSFSIAEMFADKILCWFPLYHHVKFAFLVWLQLPSTNGA 99 (137)
Q Consensus 22 ~~~~~~~ig~~yPay~S~k~l~~--~~~~~~~~wL~YWiv~~~~~~~E~~~~~ii~~iPfY~~~Kl~fliwL~~P~~~GA 99 (137)
.+++.+++|+.||||+|+|++++ ++-++..+|++|||++|+++++|.+.|.+++|+|+|+++|++|++||.+|.++|+
T Consensus 2 ~~~lv~v~G~~yPAy~tyKavk~~~~~i~el~~W~~YWIv~A~~t~~e~~~d~~lsw~P~Y~e~Kl~fv~wL~~p~t~G~ 81 (225)
T KOG1726|consen 2 IRLLVLVFGYAYPAYATYKAVKSNRKDIRELLRWMMYWIVFAALTVFETLTDFLLSWFPFYSEFKLAFVIWLLSPATKGA 81 (225)
T ss_pred eehHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccccCcc
Confidence 35677789999999999999999 6678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhchHHHHHHHHHHHHHHHhhhh
Q 032614 100 KYFYMSRLRPFLLRHQARLDQILESVNGEMVRTCD 134 (137)
Q Consensus 100 ~~lY~~~i~P~l~~~e~~ID~~l~~~~~~~~~~~~ 134 (137)
.++|+++++|++.+||++||+.+.++++++.+.+.
T Consensus 82 ~~vY~~f~~p~ls~~E~eid~~l~~~k~~~~~~a~ 116 (225)
T KOG1726|consen 82 SYVYRKFLRPFLSKHEEEIDRMLVEAKERVYDAAV 116 (225)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888776653
No 4
>COG5052 YOP1 Protein involved in membrane traffic [Intracellular trafficking and secretion]
Probab=99.90 E-value=4.2e-23 Score=155.91 Aligned_cols=107 Identities=27% Similarity=0.484 Sum_probs=100.0
Q ss_pred HhhhhhhccchHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHhcCCCCcHHHHH
Q 032614 24 TACCSVGTILPVYSTFKAIESKDENEKQKWLVYWAVYGSFSIAEMFADKILCWFPLYHHVKFAFLVWLQLPSTNGAKYFY 103 (137)
Q Consensus 24 ~~~~~ig~~yPay~S~k~l~~~~~~~~~~wL~YWiv~~~~~~~E~~~~~ii~~iPfY~~~Kl~fliwL~~P~~~GA~~lY 103 (137)
++.+..|+..|++.|.++++..++.|++||++||+|+++.+++|.+...+++|+|+|+..|.+|++|+..|+++||..+|
T Consensus 61 ilt~~~~~~lP~~~~l~a~~~~n~~dd~q~l~ywmV~~~lsaie~~s~~il~~vP~Y~~~K~vFllw~~~prt~GA~~IY 140 (186)
T COG5052 61 ILTNVAGFSLPAQLSLVAFYTLNFMDDTQLLTYWMVFGFLSAIEKYSGAILSKVPFYWTLKNVFLLWLLLPRTEGARIIY 140 (186)
T ss_pred HHHHHHHHHccHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccCceeeeH
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhchHH-HHHHHHHHHHHHH
Q 032614 104 MSRLRPFLLRHQAR-LDQILESVNGEMV 130 (137)
Q Consensus 104 ~~~i~P~l~~~e~~-ID~~l~~~~~~~~ 130 (137)
++.++|..++|-.+ ||+...+.++...
T Consensus 141 ~~~i~p~~s~~~~~~IektV~~~~~A~a 168 (186)
T COG5052 141 DDIIAPDVSDHGFRTIEKTVKNGTKASA 168 (186)
T ss_pred HhhccccccHHHHHHHHHHHHhhccccH
Confidence 99999999988877 8887776654443
No 5
>KOG1726 consensus HVA22/DP1 gene product-related proteins [Defense mechanisms]
Probab=76.34 E-value=15 Score=29.18 Aligned_cols=78 Identities=14% Similarity=-0.005 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHhcCCCCcHHHHHHHhhhhhhhhchHHHHHHHHH
Q 032614 47 ENEKQKWLVYWAVYGSFSIAEMFADKILCWFPLYHHVKFAFLVWLQLPSTNGAKYFYMSRLRPFLLRHQARLDQILES 124 (137)
Q Consensus 47 ~~~~~~wL~YWiv~~~~~~~E~~~~~ii~~iPfY~~~Kl~fliwL~~P~~~GA~~lY~~~i~P~l~~~e~~ID~~l~~ 124 (137)
.++...-..+|....++..++.+....+++-+.|..-+..+..|...|+.+++...++.-..|-.+.+...+-+.+++
T Consensus 96 ~E~eid~~l~~~k~~~~~~a~~~~~r~l~~~~~~~~~a~~~~~~~~tp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (225)
T KOG1726|consen 96 HEEEIDRMLVEAKERVYDAAVSILKRALNYAQTYALEAAVFSQGQLTPRLQRSSSDQDLTTIPEESGKKAPDLDVLEN 173 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchhhhhhhhcCccccccccCCcccchh
Confidence 355677888999999999999999999999999999999999999999999999999998888877665555554443
No 6
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=57.70 E-value=3.4 Score=29.95 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=0.0
Q ss_pred hhhchHHHHHHHHHHHHHHHh
Q 032614 111 LLRHQARLDQILESVNGEMVR 131 (137)
Q Consensus 111 l~~~e~~ID~~l~~~~~~~~~ 131 (137)
.++|+++||+.++.++++++|
T Consensus 149 y~~~~~~Id~~~~~~~~~~~k 169 (169)
T PF02453_consen 149 YEKYQEEIDQYVAKVKEKVKK 169 (169)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 468999999999999988764
No 7
>PF10067 DUF2306: Predicted membrane protein (DUF2306); InterPro: IPR018750 Members of this family of hypothetical bacterial proteins have no known function.
Probab=51.26 E-value=40 Score=23.03 Aligned_cols=55 Identities=9% Similarity=0.064 Sum_probs=32.1
Q ss_pred chhhHHHHHHHHhh--hhhHHHHHHhhhhhhccchHHHHHHHhhcCCHHHHHHHHHH
Q 032614 2 ALSGEVGLRLLLCP--IGSNIVVRTACCSVGTILPVYSTFKAIESKDENEKQKWLVY 56 (137)
Q Consensus 2 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~ig~~yPay~S~k~l~~~~~~~~~~wL~Y 56 (137)
.++++.|+++-... ...+-..-+....+-.++-....+.++++++-++.++|+..
T Consensus 21 ~~~a~sa~~i~~~~~~g~~~~~~~~~~la~~~l~~~~~a~~~ar~~~i~~Hr~wM~r 77 (103)
T PF10067_consen 21 LISALSALFIAFYAPGGLWGGFSGFHLLAVLWLITTFLAVRAARRGRIAAHRRWMIR 77 (103)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 35566666554441 11111122233345566777888888899988888887754
No 8
>PF06596 PsbX: Photosystem II reaction centre X protein (PsbX); InterPro: IPR009518 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. The low molecular weight transmembrane protein PsbX found in PSII is associated with the oxygen-evolving complex. Its expression is light-regulated. PsbX appears to be involved in the regulation of the amount of PSII [], and may be involved in the binding or turnover of quinone molecules at the Qb (PsbA) site [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0016020 membrane; PDB: 3ARC_x 3A0H_X 3A0B_X 3PRR_X 1S5L_x 4FBY_j 3PRQ_X 3KZI_X 3BZ2_X 3BZ1_X.
Probab=48.02 E-value=34 Score=19.91 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=25.3
Q ss_pred HhhhhhHHHHHHhhhhhhccchHHHHHHHhhcCCH
Q 032614 13 LCPIGSNIVVRTACCSVGTILPVYSTFKAIESKDE 47 (137)
Q Consensus 13 ~~~~~~~~~~~~~~~~ig~~yPay~S~k~l~~~~~ 47 (137)
++|.++||+.+++.-.+-++.|+-.-+-.+.++|+
T Consensus 1 mTpSL~nfl~Sl~aG~~iVv~~i~~ali~VSq~D~ 35 (39)
T PF06596_consen 1 MTPSLSNFLLSLVAGAVIVVIPIAGALIFVSQFDR 35 (39)
T ss_dssp --HHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCS-
T ss_pred CCHhHHHHHHHHHhhhhhhhhhhhhheEEEeccCc
Confidence 36788899999988877788888777777777664
No 9
>PRK06553 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=42.69 E-value=1.8e+02 Score=23.46 Aligned_cols=76 Identities=20% Similarity=0.199 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHH-HHHhcCCCCcHHHHHHHhhhhhhhhchHHHHHHHHHHHHH
Q 032614 50 KQKWLVYWAVYGSFSIAEMFADKILCWFPLYHHVKFAFL-VWLQLPSTNGAKYFYMSRLRPFLLRHQARLDQILESVNGE 128 (137)
Q Consensus 50 ~~~wL~YWiv~~~~~~~E~~~~~ii~~iPfY~~~Kl~fl-iwL~~P~~~GA~~lY~~~i~P~l~~~e~~ID~~l~~~~~~ 128 (137)
.+.++.||++.++. .+++++|.....+++-. .|+..+..+....+-.++-.=+-.+-+++++++..+..++
T Consensus 19 ~~~~~~~~l~~~l~--------~~~~~LP~~~~~~~~~~l~~~~~~~~~rr~v~~~NL~~afPe~s~~e~~~i~~~~~~~ 90 (308)
T PRK06553 19 FAGWLVAQLVFGLL--------GLLRLFPADKAINFFGRLARLIGPLLPRHRVALDNLRAAFPEKSEAEIEAIALGMWDN 90 (308)
T ss_pred HHHHHHHHHHHHHH--------HHHHHCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 45556666554432 33567788666555433 3333332222344555543334456778888888888877
Q ss_pred HHhhh
Q 032614 129 MVRTC 133 (137)
Q Consensus 129 ~~~~~ 133 (137)
+.+.+
T Consensus 91 ~g~~~ 95 (308)
T PRK06553 91 LGRLG 95 (308)
T ss_pred HHHHH
Confidence 76543
No 10
>CHL00114 psbX photosystem II protein X; Reviewed
Probab=39.63 E-value=10 Score=22.06 Aligned_cols=34 Identities=15% Similarity=0.229 Sum_probs=23.7
Q ss_pred HhhhhhHHHHHHhhhhhhccchHHHHHHHhhcCC
Q 032614 13 LCPIGSNIVVRTACCSVGTILPVYSTFKAIESKD 46 (137)
Q Consensus 13 ~~~~~~~~~~~~~~~~ig~~yPay~S~k~l~~~~ 46 (137)
++|.++||+.+++...+-++.|+-.-+-.+.++|
T Consensus 1 MTpSLsnF~~SL~~Ga~ivvipi~~aLifvSq~D 34 (39)
T CHL00114 1 MTPSLSAFINSLLLGAIIVVIPITLALLFVSQKD 34 (39)
T ss_pred CChhHHHHHHHHHHHHHHhHHHhhhheEEEeccc
Confidence 3688899999998887777788754444444443
No 11
>PRK13707 conjugal transfer pilus assembly protein TraL; Provisional
Probab=36.01 E-value=1.3e+02 Score=20.74 Aligned_cols=27 Identities=15% Similarity=0.332 Sum_probs=20.0
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 032614 35 VYSTFKAIESKDENEKQKWLVYWAVYG 61 (137)
Q Consensus 35 ay~S~k~l~~~~~~~~~~wL~YWiv~~ 61 (137)
.+..++-+|....+..-..+.||-.=+
T Consensus 55 ~~~~~r~lK~g~g~~~l~h~~YW~lP~ 81 (101)
T PRK13707 55 VWFGIRKLKKGRGSSWLRDLIYWYLPT 81 (101)
T ss_pred HHHHHHHHHcCCChhHHHHHHHHhcch
Confidence 567778888877777778889996433
No 12
>PF14975 DUF4512: Domain of unknown function (DUF4512)
Probab=33.44 E-value=25 Score=24.00 Aligned_cols=14 Identities=21% Similarity=0.676 Sum_probs=11.2
Q ss_pred HHHHHhhhhhhhhc
Q 032614 101 YFYMSRLRPFLLRH 114 (137)
Q Consensus 101 ~lY~~~i~P~l~~~ 114 (137)
+||++|++|++-+.
T Consensus 13 wIykkFlqP~i~~~ 26 (88)
T PF14975_consen 13 WIYKKFLQPYIYPF 26 (88)
T ss_pred HHHHHHHHHHHHHH
Confidence 57899999988655
No 13
>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.42 E-value=2.8e+02 Score=22.04 Aligned_cols=79 Identities=14% Similarity=0.123 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHhcC---CCCcHHHHHHHhhh----hh-hhhchHHHHHHH
Q 032614 51 QKWLVYWAVYGSFSIAEMFADKILCWFPLYHHVKFAFLVWLQLP---STNGAKYFYMSRLR----PF-LLRHQARLDQIL 122 (137)
Q Consensus 51 ~~wL~YWiv~~~~~~~E~~~~~ii~~iPfY~~~Kl~fliwL~~P---~~~GA~~lY~~~i~----P~-l~~~e~~ID~~l 122 (137)
-.++.-|+--++-..-|..+.. ++ -..+|.....|...- .++|...+|--++. |. .++||..||+.+
T Consensus 126 a~~~~~~in~~l~~l~~ia~~~--d~---~~~lk~~v~lw~lS~vGs~fn~lTll~ig~v~~~TvP~~YEky~d~ID~~~ 200 (230)
T KOG1792|consen 126 ASSLRVEINQALSELRDIALGR--DL---KDFLKVAVGLWILSYVGSLFNFLTLLYIGLVLLFTVPVLYEKYEDQIDPYL 200 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc--cH---HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchhHHhHHHHhHHH
Confidence 4566667666665555544421 11 256777777777553 35777777765443 32 469999999999
Q ss_pred HHHHHHHHhhhh
Q 032614 123 ESVNGEMVRTCD 134 (137)
Q Consensus 123 ~~~~~~~~~~~~ 134 (137)
+.+.+++++..+
T Consensus 201 ~~~~~~~k~~~~ 212 (230)
T KOG1792|consen 201 GKVMEELKKHYR 212 (230)
T ss_pred HHHHHHHHHHHH
Confidence 999988887653
No 14
>TIGR02893 spore_yabQ spore cortex biosynthesis protein YabQ. YabQ, a protein predicted to span the membrane several times, is found in exactly those genomes whose species perform sporulation in the style of Bacillus subtilis, Clostridium tetani, and others of the Firmicutes. Mutation of this sigma(E)-dependent gene blocks development of the spore cortex. The length of the C-terminal region, including some hydrophobic regions, is rather variable between members.
Probab=29.26 E-value=2.2e+02 Score=20.51 Aligned_cols=94 Identities=13% Similarity=0.198 Sum_probs=53.7
Q ss_pred hhhccchHHHHHHHhhcCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHhcCCCCcHHHHHHHh
Q 032614 28 SVGTILPVYSTFKAIESKDEN-EKQKWLVYWAVYGSFSIAEMFADKILCWFPLYHHVKFAFLVWLQLPSTNGAKYFYMSR 106 (137)
Q Consensus 28 ~ig~~yPay~S~k~l~~~~~~-~~~~wL~YWiv~~~~~~~E~~~~~ii~~iPfY~~~Kl~fliwL~~P~~~GA~~lY~~~ 106 (137)
.+|.+|=.|..++-..+.++- ..-.=+-||++.+.....--+. --+.+++.-.++.+. ..-.+|++.
T Consensus 18 ~lG~~yD~yr~~r~~~~~~~~~~~ieDilFWi~~~~~vF~~L~~-------~N~G~lR~Y~~lg~~-----~G~~lY~~l 85 (130)
T TIGR02893 18 ILGALFDTYRRFRKRQRLNKILVFIEDILFWIVQALIVFYFLLY-------VNEGEIRFYVFLALL-----CGLAIYQAL 85 (130)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-------hccchhhHHHHHHHH-----HHHHHHHHH
Confidence 456655555555443333220 0011256888777665543222 124445555555443 245678899
Q ss_pred hhhhhhhchHHHHHHHHHHHHHHHhhh
Q 032614 107 LRPFLLRHQARLDQILESVNGEMVRTC 133 (137)
Q Consensus 107 i~P~l~~~e~~ID~~l~~~~~~~~~~~ 133 (137)
+++.+.+-.+.+=+...+..+-+.|+.
T Consensus 86 ls~~~~~~l~~ii~~~~k~~r~i~k~~ 112 (130)
T TIGR02893 86 LSKYYVRILEKVITIVVKVLRFLFKLI 112 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888888777777777666654
No 15
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=26.66 E-value=1.4e+02 Score=27.60 Aligned_cols=58 Identities=9% Similarity=0.297 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-hhhhHHHHHHH-----------------------HHHHHhcCC----CCcHHHH
Q 032614 51 QKWLVYWAVYGSFSIAEMFADKILC-WFPLYHHVKFA-----------------------FLVWLQLPS----TNGAKYF 102 (137)
Q Consensus 51 ~~wL~YWiv~~~~~~~E~~~~~ii~-~iPfY~~~Kl~-----------------------fliwL~~P~----~~GA~~l 102 (137)
-..+++=++++++.++|.++++=+. ..|+|-+++.+ +++|++.|. |-++.|+
T Consensus 28 ~~~~~~~~~w~~~~~~d~~~~~r~e~~~p~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~p~~~~~~~~~~~v 107 (697)
T PF09726_consen 28 FLYVKFLLVWALVLLADFMLEFRFEYLWPFWLLLRSVYDSFKYQGLAFSVFFVCIAFTSDLICLFFIPVHWLFFAASTYV 107 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3566677777888888888876553 45887655532 245566664 5667777
Q ss_pred HHHhhh
Q 032614 103 YMSRLR 108 (137)
Q Consensus 103 Y~~~i~ 108 (137)
+-.++.
T Consensus 108 ~~~~~~ 113 (697)
T PF09726_consen 108 WVQYVW 113 (697)
T ss_pred HHHHhh
Confidence 666554
No 16
>COG2928 Uncharacterized conserved protein [Function unknown]
Probab=26.06 E-value=2.9e+02 Score=22.06 Aligned_cols=20 Identities=20% Similarity=0.418 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032614 52 KWLVYWAVYGSFSIAEMFAD 71 (137)
Q Consensus 52 ~wL~YWiv~~~~~~~E~~~~ 71 (137)
-+++.|++..++..+++...
T Consensus 20 laiT~~vv~~i~~~l~~~~~ 39 (222)
T COG2928 20 LAITLWVVSWIFGLLDQFVG 39 (222)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 46788888888888887775
No 17
>PF07178 TraL: TraL protein; InterPro: IPR009838 This entry represents bacterial TraL proteins. TraL is a predicted peripheral membrane protein involved in bacterial sex pilus assembly []. TraL is part of the type IV secretion system for conjugative plasmid transfer []. The exact function of TraL is unknown.; GO: 0000746 conjugation, 0019867 outer membrane
Probab=23.21 E-value=2.4e+02 Score=18.87 Aligned_cols=27 Identities=11% Similarity=0.252 Sum_probs=18.8
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 032614 35 VYSTFKAIESKDENEKQKWLVYWAVYG 61 (137)
Q Consensus 35 ay~S~k~l~~~~~~~~~~wL~YWiv~~ 61 (137)
+...++-++++..+..-..+.||..-.
T Consensus 49 ~~~~~~k~K~~~~~g~l~h~lYW~~p~ 75 (95)
T PF07178_consen 49 LWWGYRKFKKGRGRGFLLHLLYWYGPS 75 (95)
T ss_pred HHHHHHHHHccCCccHHHHHHHHHcch
Confidence 455566677777777778889996544
No 18
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.10 E-value=1e+02 Score=22.06 Aligned_cols=26 Identities=15% Similarity=0.328 Sum_probs=22.8
Q ss_pred hhhchHHHHHHHHHHHHHHHhhhhhc
Q 032614 111 LLRHQARLDQILESVNGEMVRTCDFK 136 (137)
Q Consensus 111 l~~~e~~ID~~l~~~~~~~~~~~~~~ 136 (137)
+.+-++.+|+..+-+++++.|.+||.
T Consensus 31 ~~~tq~QvdeVv~IMr~NV~KVlER~ 56 (116)
T KOG0860|consen 31 LQQTQAQVDEVVDIMRENVEKVLERG 56 (116)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhc
Confidence 56778999999999999999999974
No 19
>PF14837 INTS5_N: Integrator complex subunit 5 N-terminus
Probab=21.23 E-value=3.3e+02 Score=21.47 Aligned_cols=55 Identities=20% Similarity=0.329 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhcCCCCcHHH-----HHHHhhhhhhhhch------------HHHHHHHHHHHHHHHhhhhh
Q 032614 81 HHVKFAFLVWLQLPSTNGAKY-----FYMSRLRPFLLRHQ------------ARLDQILESVNGEMVRTCDF 135 (137)
Q Consensus 81 ~~~Kl~fliwL~~P~~~GA~~-----lY~~~i~P~l~~~e------------~~ID~~l~~~~~~~~~~~~~ 135 (137)
.++|.++.+.--.|.++-|-+ +|+..++.++.+-| +..|+.+.+..+.+.++++.
T Consensus 26 ~lvk~al~lL~~lPaaR~AVley~~~vf~eaV~~~~~~~E~~~~~~~~~~~~~~~~~ai~ei~~~L~~fv~~ 97 (213)
T PF14837_consen 26 DLVKCALSLLRSLPAARDAVLEYFGLVFDEAVHLYLSPKENDAQNNKQQQDEADLDEAIQEIHDVLSRFVEA 97 (213)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCccHHHHHHHHHHHHHHHHhc
Confidence 668899999999999888854 67777877777666 56777788777777776653
Done!