Query 032614
Match_columns 137
No_of_seqs 110 out of 653
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 05:24:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032614.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032614hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2aze_B Transcription factor E2 40.1 25 0.00085 23.6 3.1 25 111-135 18-42 (106)
2 2l9u_A Receptor tyrosine-prote 35.4 21 0.00071 19.6 1.7 21 1-21 8-28 (40)
3 2c5z_A SET domain protein 2; S 29.3 29 0.00098 23.5 2.0 35 101-135 19-56 (104)
4 1jy2_P Fibrinogen gamma-B chai 24.6 74 0.0025 18.4 2.9 22 107-128 25-46 (48)
5 3he5_B Synzip2; heterodimeric 17.5 1.4E+02 0.0047 17.0 3.0 22 111-132 22-43 (52)
6 1iie_A Protein (HLA-DR antigen 15.7 90 0.0031 19.7 2.1 24 38-61 32-59 (75)
7 3at7_A Alginate-binding flagel 13.0 2.2E+02 0.0077 21.8 4.2 34 96-130 194-227 (283)
8 1jb0_I Photosystem 1 reaction 12.5 74 0.0025 17.5 0.9 19 19-37 8-26 (38)
9 2kwt_A Protease NS2-3; NS2 dom 12.2 92 0.0032 16.6 1.2 10 51-60 8-17 (33)
10 3ghg_C Fibrinogen gamma chain; 11.9 1.7E+02 0.0056 24.2 3.3 26 107-132 25-50 (411)
No 1
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=40.05 E-value=25 Score=23.59 Aligned_cols=25 Identities=12% Similarity=0.227 Sum_probs=22.1
Q ss_pred hhhchHHHHHHHHHHHHHHHhhhhh
Q 032614 111 LLRHQARLDQILESVNGEMVRTCDF 135 (137)
Q Consensus 111 l~~~e~~ID~~l~~~~~~~~~~~~~ 135 (137)
+...|+.+|+.+..+.+++++++|-
T Consensus 18 L~~~E~~LD~~i~~~~~~l~~lted 42 (106)
T 2aze_B 18 LQESEQQLDHLMNICTTQLRLLSED 42 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5678999999999999999998863
No 2
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=35.37 E-value=21 Score=19.60 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=14.9
Q ss_pred CchhhHHHHHHHHhhhhhHHH
Q 032614 1 MALSGEVGLRLLLCPIGSNIV 21 (137)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (137)
||++.++||..++.-.++.|+
T Consensus 8 malt~i~gl~vif~~lg~tfl 28 (40)
T 2l9u_A 8 MALTVIAGLVVIFMMLGGTFL 28 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCceeE
Confidence 577778888777777666554
No 3
>2c5z_A SET domain protein 2; SRI domain, RNA polymerase II, transcription, CTD, SET2 histone methyltransferase; NMR {Saccharomyces cerevisiae}
Probab=29.30 E-value=29 Score=23.46 Aligned_cols=35 Identities=11% Similarity=0.284 Sum_probs=26.2
Q ss_pred HHHHHhhhhhhhhchHH--HH-HHHHHHHHHHHhhhhh
Q 032614 101 YFYMSRLRPFLLRHQAR--LD-QILESVNGEMVRTCDF 135 (137)
Q Consensus 101 ~lY~~~i~P~l~~~e~~--ID-~~l~~~~~~~~~~~~~ 135 (137)
.++-++|-.++.+||++ || +.+..+.+++++....
T Consensus 19 K~fA~~VPN~ikKYe~e~~igrDniK~CArdiVk~L~~ 56 (104)
T 2c5z_A 19 KFFASFVPNLIKKNPQSKQFDHENIKQCAKDIVKILTT 56 (104)
T ss_dssp HHHHHHHHHHHHTSTTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHhhhhccccchHHHHHHHHHHHHHHHH
Confidence 45667777888999999 88 5777777777776543
No 4
>1jy2_P Fibrinogen gamma-B chain; fragment E, disulfide bonds, asymmetry, coiled- coil, beta-sheet, blood clotting; 1.40A {Bos taurus} SCOP: h.1.8.1 PDB: 1jy3_P 2a45_I*
Probab=24.61 E-value=74 Score=18.45 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=16.8
Q ss_pred hhhhhhhchHHHHHHHHHHHHH
Q 032614 107 LRPFLLRHQARLDQILESVNGE 128 (137)
Q Consensus 107 i~P~l~~~e~~ID~~l~~~~~~ 128 (137)
|..++++|+..+|+-+..+.+-
T Consensus 25 iadfL~~Yq~~vd~dL~~lE~~ 46 (48)
T 1jy2_P 25 IADFLNNYQTSVDKDLRTLEGI 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccccchhhHHHHHHHH
Confidence 5567889999999877766543
No 5
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=17.46 E-value=1.4e+02 Score=17.00 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=17.6
Q ss_pred hhhchHHHHHHHHHHHHHHHhh
Q 032614 111 LLRHQARLDQILESVNGEMVRT 132 (137)
Q Consensus 111 l~~~e~~ID~~l~~~~~~~~~~ 132 (137)
+.+-|+.+++++.+..+++.|+
T Consensus 22 lerdeqnlekiianlrdeiarl 43 (52)
T 3he5_B 22 LERDEQNLEKIIANLRDEIARL 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHHHHHHHHHHHHHHH
Confidence 4567888888998888888775
No 6
>1iie_A Protein (HLA-DR antigens associated invariant chain); major histocompatibility complex, antigen processing, oligomerization, chaperonin; NMR {Homo sapiens} SCOP: a.109.1.1
Probab=15.67 E-value=90 Score=19.74 Aligned_cols=24 Identities=8% Similarity=0.574 Sum_probs=14.8
Q ss_pred HHHHhhcC-CH---HHHHHHHHHHHHHH
Q 032614 38 TFKAIESK-DE---NEKQKWLVYWAVYG 61 (137)
Q Consensus 38 S~k~l~~~-~~---~~~~~wL~YWiv~~ 61 (137)
-.|.|++. +. ..-..|+.+|.+|-
T Consensus 32 NLk~LK~~m~~~dWk~FEsWM~~WLLFe 59 (75)
T 1iie_A 32 NLRHLKNTMETIDWKVFESWMHHWLLFE 59 (75)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcChhhHHhHHHHHHHHHHHH
Confidence 34555543 22 23578999998764
No 7
>3at7_A Alginate-binding flagellin; two UP-and-DOWN four-helical bundles, ALGI structural protein; 2.10A {Sphingomonas}
Probab=12.96 E-value=2.2e+02 Score=21.84 Aligned_cols=34 Identities=15% Similarity=0.281 Sum_probs=22.5
Q ss_pred CCcHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHH
Q 032614 96 TNGAKYFYMSRLRPFLLRHQARLDQILESVNGEMV 130 (137)
Q Consensus 96 ~~GA~~lY~~~i~P~l~~~e~~ID~~l~~~~~~~~ 130 (137)
..|+.-+|. .++|++.+..+.+++-++...+++.
T Consensus 194 l~G~~~vy~-~L~~ll~~~d~~L~~~i~~~~~~~~ 227 (283)
T 3at7_A 194 FEGAKKIVD-LFRPLVVKDNRAFADKVDANFDTVF 227 (283)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 467788888 5999998777666555544444333
No 8
>1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.17.1 PDB: 3pcq_I*
Probab=12.54 E-value=74 Score=17.55 Aligned_cols=19 Identities=11% Similarity=0.024 Sum_probs=13.9
Q ss_pred HHHHHHhhhhhhccchHHH
Q 032614 19 NIVVRTACCSVGTILPVYS 37 (137)
Q Consensus 19 ~~~~~~~~~~ig~~yPay~ 37 (137)
+.+.++...++|.+.||..
T Consensus 8 ~~LPsI~VPlVglvfPai~ 26 (38)
T 1jb0_I 8 SFLPWIFIPVVCWLMPTVV 26 (38)
T ss_dssp TTHHHHHHHHHHTHHHHHH
T ss_pred hhCChhhHhHHHHHHHHHH
Confidence 3456667777999999854
No 9
>2kwt_A Protease NS2-3; NS2 domain, membrane protein, viral prote; NMR {Hepatitis c virus}
Probab=12.19 E-value=92 Score=16.63 Aligned_cols=10 Identities=30% Similarity=0.670 Sum_probs=7.0
Q ss_pred HHHHHHHHHH
Q 032614 51 QKWLVYWAVY 60 (137)
Q Consensus 51 ~~wL~YWiv~ 60 (137)
.-|++|++.=
T Consensus 8 lWWlqYfi~R 17 (33)
T 2kwt_A 8 IWWLQYFITR 17 (33)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4688888753
No 10
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=11.93 E-value=1.7e+02 Score=24.25 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=17.7
Q ss_pred hhhhhhhchHHHHHHHHHHHHHHHhh
Q 032614 107 LRPFLLRHQARLDQILESVNGEMVRT 132 (137)
Q Consensus 107 i~P~l~~~e~~ID~~l~~~~~~~~~~ 132 (137)
|+-++.+||+.+|+-|+.+.+.+.+.
T Consensus 25 l~d~L~kye~~V~~~l~~L~~~l~~i 50 (411)
T 3ghg_C 25 IADFLSTYQTKVDKDLQSLEDILHQV 50 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhhHHHHHHHHHHHH
Confidence 45667788888888777666555443
Done!