Query 032614
Match_columns 137
No_of_seqs 110 out of 653
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 05:24:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032614.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032614hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2azeb1 e.63.1.2 (B:201-301) T 30.5 21 0.0015 22.2 3.1 25 111-135 13-37 (101)
2 d2e74g1 f.23.26.1 (G:9-35) Pet 22.1 19 0.0013 17.0 1.2 14 27-40 9-22 (27)
3 d1iiea_ a.109.1.1 (A:) Class I 16.9 23 0.0017 21.0 1.1 24 38-61 32-59 (75)
4 d2csba4 a.60.2.4 (A:465-519) T 14.4 54 0.0039 17.5 2.2 22 34-55 1-22 (55)
5 d1gnwa1 a.45.1.1 (A:86-211) Cl 11.0 1.6E+02 0.012 17.6 4.2 33 98-130 29-63 (126)
6 d1nvpb_ a.32.1.1 (B:) Large ch 10.6 87 0.0063 16.3 2.2 9 102-110 5-13 (43)
7 d1nh2b_ a.32.1.1 (B:) Large ch 10.3 67 0.0049 17.0 1.7 13 100-112 5-17 (46)
8 d1riqa1 a.203.1.1 (A:237-457) 8.0 2.7E+02 0.02 18.8 4.8 21 92-112 48-68 (221)
9 d1nekd_ f.21.2.2 (D:) Succinat 7.9 56 0.0041 19.9 0.8 33 78-110 53-85 (113)
10 d1iuga_ c.67.1.3 (A:) Subgroup 7.8 1E+02 0.0074 22.0 2.4 37 99-135 12-48 (348)
No 1
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.46 E-value=21 Score=22.17 Aligned_cols=25 Identities=12% Similarity=0.227 Sum_probs=21.6
Q ss_pred hhhchHHHHHHHHHHHHHHHhhhhh
Q 032614 111 LLRHQARLDQILESVNGEMVRTCDF 135 (137)
Q Consensus 111 l~~~e~~ID~~l~~~~~~~~~~~~~ 135 (137)
+..-|+.+|+.+..+.++++.++|-
T Consensus 13 L~~~E~~LD~li~~~~~~L~~lted 37 (101)
T d2azeb1 13 LQESEQQLDHLMNICTTQLRLLSED 37 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4577999999999999999998863
No 2
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=22.15 E-value=19 Score=16.97 Aligned_cols=14 Identities=21% Similarity=0.408 Sum_probs=10.3
Q ss_pred hhhhccchHHHHHH
Q 032614 27 CSVGTILPVYSTFK 40 (137)
Q Consensus 27 ~~ig~~yPay~S~k 40 (137)
.+.|..|.||+.+|
T Consensus 9 tl~glf~aayqqyk 22 (27)
T d2e74g1 9 TLGGLFYAAYQQYK 22 (27)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 34778888888775
No 3
>d1iiea_ a.109.1.1 (A:) Class II MHC-associated invariant chain ectoplasmic trimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.94 E-value=23 Score=20.99 Aligned_cols=24 Identities=8% Similarity=0.574 Sum_probs=14.9
Q ss_pred HHHHhhcC-CH---HHHHHHHHHHHHHH
Q 032614 38 TFKAIESK-DE---NEKQKWLVYWAVYG 61 (137)
Q Consensus 38 S~k~l~~~-~~---~~~~~wL~YWiv~~ 61 (137)
-.|.|++. +. .+-..|+.+|.+|-
T Consensus 32 NLk~LK~~M~~~dWk~FEsWM~~WLlFe 59 (75)
T d1iiea_ 32 NLRHLKNTMETIDWKVFESWMHHWLLFE 59 (75)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcchhhHHHHHHHHHHHHHHH
Confidence 34555543 22 24578999998764
No 4
>d2csba4 a.60.2.4 (A:465-519) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=14.41 E-value=54 Score=17.52 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=15.7
Q ss_pred hHHHHHHHhhcCCHHHHHHHHH
Q 032614 34 PVYSTFKAIESKDENEKQKWLV 55 (137)
Q Consensus 34 Pay~S~k~l~~~~~~~~~~wL~ 55 (137)
|+|+|.-.++.-+.+...+.|+
T Consensus 1 pgyaslisirgidreraerllk 22 (55)
T d2csba4 1 PGYASLISIRGIDRERAERLLK 22 (55)
T ss_dssp TTHHHHHTSTTCCHHHHHHHHH
T ss_pred CCccceeeeecccHHHHHHHHH
Confidence 7888888888777665555554
No 5
>d1gnwa1 a.45.1.1 (A:86-211) Class phi GST {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=11.05 E-value=1.6e+02 Score=17.59 Aligned_cols=33 Identities=6% Similarity=0.039 Sum_probs=19.8
Q ss_pred cHHHHHHHhhhhhhh--hchHHHHHHHHHHHHHHH
Q 032614 98 GAKYFYMSRLRPFLL--RHQARLDQILESVNGEMV 130 (137)
Q Consensus 98 GA~~lY~~~i~P~l~--~~e~~ID~~l~~~~~~~~ 130 (137)
.+...|++++.|... ..++.+++..+...+.+.
T Consensus 29 ~~~l~~~~~~~p~~G~~~d~~~v~~~~~~l~~~l~ 63 (126)
T d1gnwa1 29 ASKLAFEQIFKSIYGLTTDEAVVAEEEAKLAKVLD 63 (126)
T ss_dssp HHHHHHHHTHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 345567888888652 346666666665554433
No 6
>d1nvpb_ a.32.1.1 (B:) Large chain TOA1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.56 E-value=87 Score=16.29 Aligned_cols=9 Identities=22% Similarity=0.405 Sum_probs=4.0
Q ss_pred HHHHhhhhh
Q 032614 102 FYMSRLRPF 110 (137)
Q Consensus 102 lY~~~i~P~ 110 (137)
+|+.+|.-.
T Consensus 5 vY~~VIedV 13 (43)
T d1nvpb_ 5 LYRSVIEDV 13 (43)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444433
No 7
>d1nh2b_ a.32.1.1 (B:) Large chain TOA1, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.33 E-value=67 Score=17.00 Aligned_cols=13 Identities=8% Similarity=0.041 Sum_probs=6.8
Q ss_pred HHHHHHhhhhhhh
Q 032614 100 KYFYMSRLRPFLL 112 (137)
Q Consensus 100 ~~lY~~~i~P~l~ 112 (137)
.-+|+.+|+-.+.
T Consensus 5 ~~vY~~VI~dVI~ 17 (46)
T d1nh2b_ 5 SRVYEIIVESVVN 17 (46)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4456665554443
No 8
>d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]}
Probab=7.96 E-value=2.7e+02 Score=18.83 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=17.0
Q ss_pred hcCCCCcHHHHHHHhhhhhhh
Q 032614 92 QLPSTNGAKYFYMSRLRPFLL 112 (137)
Q Consensus 92 ~~P~~~GA~~lY~~~i~P~l~ 112 (137)
+.|...|.+|+=++++|.-++
T Consensus 48 v~PsN~grGYvlRriiRRa~r 68 (221)
T d1riqa1 48 VIPSNEGRGYVIRRILRRAMR 68 (221)
T ss_dssp CCCCSSHHHHHHHHHHHHHHH
T ss_pred CCCCcCCCchHHHHHHHHHHH
Confidence 468888999998888888764
No 9
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=7.94 E-value=56 Score=19.92 Aligned_cols=33 Identities=9% Similarity=0.095 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHHHHhcCCCCcHHHHHHHhhhhh
Q 032614 78 PLYHHVKFAFLVWLQLPSTNGAKYFYMSRLRPF 110 (137)
Q Consensus 78 PfY~~~Kl~fliwL~~P~~~GA~~lY~~~i~P~ 110 (137)
|.-..+-.++++-.......|-..+-+.+++|-
T Consensus 53 ~~~~il~~l~l~~~~~H~~lGl~~IieDYi~~~ 85 (113)
T d1nekd_ 53 AFTKVFTLLALFSILIHAWIGMWQVLTDYVKPL 85 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHhhhHHHhcCCh
Confidence 444445555555555556678888888888753
No 10
>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}
Probab=7.79 E-value=1e+02 Score=22.00 Aligned_cols=37 Identities=11% Similarity=0.071 Sum_probs=28.0
Q ss_pred HHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHhhhhh
Q 032614 99 AKYFYMSRLRPFLLRHQARLDQILESVNGEMVRTCDF 135 (137)
Q Consensus 99 A~~lY~~~i~P~l~~~e~~ID~~l~~~~~~~~~~~~~ 135 (137)
..-+-+..-+|.+.+.++...+.++++.+.+++++..
T Consensus 12 ~~~V~~am~~~~~~hr~~~f~~i~~~~~~~l~~ll~~ 48 (348)
T d1iuga_ 12 HPKALEALARPQLHHRTEAAREVFLKARGLLREAFRT 48 (348)
T ss_dssp CHHHHHHHHSCCCCTTSHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 3445556667777777888888999999999888764
Done!