BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>032617
MASSSHRGGAGGPFYGGAAPYRSREGLTTRPVAGSDEIQLRIDPVNADLDDEITGLRSQV
KQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLF
ALFLFFILYMWSKMFRR

High Scoring Gene Products

Symbol, full name Information P value
AT4G14600 protein from Arabidopsis thaliana 3.6e-41
AT1G29060 protein from Arabidopsis thaliana 5.5e-38

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  032617
        (137 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2129940 - symbol:AT4G14600 "AT4G14600" species...   437  3.6e-41   1
TAIR|locus:2029954 - symbol:AT1G29060 "AT1G29060" species...   407  5.5e-38   1


>TAIR|locus:2129940 [details] [associations]
            symbol:AT4G14600 "AT4G14600" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005794
            "Golgi apparatus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005886 "plasma membrane" evidence=IDA]
            InterPro:IPR000727 PROSITE:PS50192 GO:GO:0016021 GO:GO:0005886
            GO:GO:0000139 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0016192
            GO:GO:0005789 GO:GO:0015031 EMBL:Z97336 EMBL:AL161539 EMBL:AK118653
            EMBL:AY074370 EMBL:AY091400 EMBL:AY085955 IPI:IPI00516719
            PIR:E71408 RefSeq:NP_567434.1 UniGene:At.33264
            ProteinModelPortal:Q8VXX9 SMR:Q8VXX9 STRING:Q8VXX9 PaxDb:Q8VXX9
            PRIDE:Q8VXX9 EnsemblPlants:AT4G14600.1 GeneID:827108
            KEGG:ath:AT4G14600 TAIR:At4g14600 eggNOG:NOG241547
            HOGENOM:HOG000239806 InParanoid:Q8VXX9 KO:K08505 OMA:TEAKYQN
            PhylomeDB:Q8VXX9 ProtClustDB:CLSN2688063 Genevestigator:Q8VXX9
            GermOnline:AT4G14600 Uniprot:Q8VXX9
        Length = 137

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 85/137 (62%), Positives = 104/137 (75%)

Query:     1 MASSSHRXXXXXXXXXXXXXXRSREGLTTRPVAGSDEIQLRIDPVNADLDDEITGLRSQV 60
             MAS+ HR              RSREGL+TR  AGS+EIQLRIDP+++DLDDEITGL  QV
Sbjct:     1 MASNPHRSGAGGSLYGGAAPYRSREGLSTRNAAGSEEIQLRIDPMHSDLDDEITGLHGQV 60

Query:    61 KQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVXX 120
             +QL+N+AQEI SEA FQ+DFLD+LQMTLI+AQAGVKNN+R+LN SI++ G+NHIMHVV  
Sbjct:    61 RQLKNIAQEIGSEAKFQRDFLDELQMTLIRAQAGVKNNIRKLNMSIIRSGNNHIMHVVLF 120

Query:   121 XXXXXXXXYMWSKMFRR 137
                     Y+WSKMF+R
Sbjct:   121 ALLVFFVLYIWSKMFKR 137


>TAIR|locus:2029954 [details] [associations]
            symbol:AT1G29060 "AT1G29060" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005794
            "Golgi apparatus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000727 PROSITE:PS50192 GO:GO:0016021
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000139 GO:GO:0016192
            GO:GO:0005789 GO:GO:0015031 HOGENOM:HOG000239806 KO:K08505
            ProtClustDB:CLSN2688063 EMBL:AC021043 EMBL:AY088265 IPI:IPI00547958
            PIR:H86412 RefSeq:NP_564319.1 UniGene:At.40818
            ProteinModelPortal:Q8L9S0 SMR:Q8L9S0 STRING:Q8L9S0 PaxDb:Q8L9S0
            PRIDE:Q8L9S0 EnsemblPlants:AT1G29060.1 GeneID:839780
            KEGG:ath:AT1G29060 TAIR:At1g29060 eggNOG:KOG1267 InParanoid:Q8L9S0
            OMA:AKFQNDF PhylomeDB:Q8L9S0 Genevestigator:Q8L9S0
            GermOnline:AT1G29060 Uniprot:Q8L9S0
        Length = 134

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 78/116 (67%), Positives = 96/116 (82%)

Query:    22 RSREGLTTRPVAGSDEIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFL 81
             RSREGL+TR  +GS+EIQLRIDP+++DLDDEI GL  QV+QL+N+AQEI SEA  Q+DFL
Sbjct:    19 RSREGLSTRNASGSEEIQLRIDPMHSDLDDEILGLHGQVRQLKNIAQEIGSEAKSQRDFL 78

Query:    82 DQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVXXXXXXXXXXYMWSKMFRR 137
             D+LQMTLI+AQAGVKNN+R+LN SI++ G+NHIMHVV          YMWSKMF+R
Sbjct:    79 DELQMTLIRAQAGVKNNIRKLNLSIIRSGNNHIMHVVLFALLLFFILYMWSKMFKR 134


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.130   0.360    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      137       113   0.00091  102 3  11 22  0.43    30
                                                     29  0.44    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  533 (57 KB)
  Total size of DFA:  108 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.20u 0.15s 14.35t   Elapsed:  00:00:00
  Total cpu time:  14.20u 0.15s 14.35t   Elapsed:  00:00:00
  Start:  Thu May  9 18:17:29 2013   End:  Thu May  9 18:17:29 2013

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