BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032617
(137 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OUT|A Chain A, Solution Structure Of Hi1506, A Novel Two Domain Protein
From Haemophilus Influenzae
Length = 131
Score = 28.9 bits (63), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Query: 25 EGLTTRPVAGSDE-IQLRIDPVNADLD 50
EGL+ P AGSDE QLR DP + DL+
Sbjct: 65 EGLSKEP-AGSDEQKQLRADPPSTDLN 90
>pdb|3H32|B Chain B, Crystal Structure Of D-Dimer From Human Fibrin Complexed
With Gly-His- Arg-Pro-Tyr-Amide
pdb|3H32|E Chain E, Crystal Structure Of D-Dimer From Human Fibrin Complexed
With Gly-His- Arg-Pro-Tyr-Amide
Length = 458
Score = 26.6 bits (57), Expect = 4.5, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 39 QLRID-PVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDF 80
QL ID VN+++ + LRS ++ LR+ Q++ S+ S Q ++
Sbjct: 150 QLYIDETVNSNIPTNLRVLRSILENLRSKIQKLESDVSAQMEY 192
>pdb|3GHG|B Chain B, Crystal Structure Of Human Fibrinogen
pdb|3GHG|E Chain E, Crystal Structure Of Human Fibrinogen
pdb|3GHG|H Chain H, Crystal Structure Of Human Fibrinogen
pdb|3GHG|K Chain K, Crystal Structure Of Human Fibrinogen
Length = 461
Score = 26.6 bits (57), Expect = 4.8, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 39 QLRID-PVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDF 80
QL ID VN+++ + LRS ++ LR+ Q++ S+ S Q ++
Sbjct: 150 QLYIDETVNSNIPTNLRVLRSILENLRSKIQKLESDVSAQMEY 192
>pdb|1RE3|B Chain B, Crystal Structure Of Fragment D Of Bbetad398a Fibrinogen
With The Peptide Ligand Gly-his-arg-pro-amide
pdb|1RE3|E Chain E, Crystal Structure Of Fragment D Of Bbetad398a Fibrinogen
With The Peptide Ligand Gly-his-arg-pro-amide
pdb|1RE4|B Chain B, Crystal Structure Of Fragment D Of Bbetad398a Fibrinogen
pdb|1RE4|E Chain E, Crystal Structure Of Fragment D Of Bbetad398a Fibrinogen
Length = 313
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 39 QLRID-PVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFL 81
QL ID VN+++ + LRS ++ LR+ Q++ S+ S Q ++
Sbjct: 2 QLYIDETVNSNIPTNLRVLRSILENLRSKIQKLESDVSAQMEYC 45
>pdb|1LT9|B Chain B, Crystal Structure Of Recombinant Human Fibrinogen
Fragment D
pdb|1LT9|E Chain E, Crystal Structure Of Recombinant Human Fibrinogen
Fragment D
pdb|1LTJ|B Chain B, Crystal Structure Of Recombinant Human Fibrinogen
Fragment D With The Peptide Ligands
Gly-Pro-Arg-Pro-Amide And Gly-His-Arg-Pro-Amide
pdb|1LTJ|E Chain E, Crystal Structure Of Recombinant Human Fibrinogen
Fragment D With The Peptide Ligands
Gly-Pro-Arg-Pro-Amide And Gly-His-Arg-Pro-Amide
pdb|1RF0|B Chain B, Crystal Structure Of Fragment D Of Gammae132a Fibrinogen
pdb|1RF0|E Chain E, Crystal Structure Of Fragment D Of Gammae132a Fibrinogen
pdb|1RF1|B Chain B, Crystal Structure Of Fragment D Of Gammae132a Fibrinogen
With The Peptide Ligand Gly-His-Arg-Pro-Amide
pdb|1RF1|E Chain E, Crystal Structure Of Fragment D Of Gammae132a Fibrinogen
With The Peptide Ligand Gly-His-Arg-Pro-Amide
pdb|2FFD|B Chain B, Fibrinogen Fragment D With "a" Knob Peptide Mimic Gprvve
pdb|2FFD|E Chain E, Fibrinogen Fragment D With "a" Knob Peptide Mimic Gprvve
pdb|2OYH|B Chain B, Crystal Structure Of Fragment D Of Gammad298,301a
Fibrinogen With The Peptide Ligand
Gly-His-Arg-Pro-Amide
pdb|2OYH|E Chain E, Crystal Structure Of Fragment D Of Gammad298,301a
Fibrinogen With The Peptide Ligand
Gly-His-Arg-Pro-Amide
pdb|2OYI|B Chain B, Crystal Structure Of Fragment D Of Gammad298,301a
Fibrinogen With The Peptide Ligand
Gly-Pro-Arg-Pro-Amide
pdb|2OYI|E Chain E, Crystal Structure Of Fragment D Of Gammad298,301a
Fibrinogen With The Peptide Ligand
Gly-Pro-Arg-Pro-Amide
pdb|3HUS|B Chain B, Crystal Structure Of Recombinant Gamma N308k Fibrinogen
Fragment D With The Peptide Ligand
Gly-Pro-Arg-Pro-Amide
pdb|3HUS|E Chain E, Crystal Structure Of Recombinant Gamma N308k Fibrinogen
Fragment D With The Peptide Ligand
Gly-Pro-Arg-Pro-Amide
Length = 313
Score = 25.4 bits (54), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 39 QLRID-PVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFL 81
QL ID VN+++ + LRS ++ LR+ Q++ S+ S Q ++
Sbjct: 2 QLYIDETVNSNIPTNLRVLRSILENLRSKIQKLESDVSAQMEYC 45
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.130 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,760,936
Number of Sequences: 62578
Number of extensions: 80669
Number of successful extensions: 254
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 244
Number of HSP's gapped (non-prelim): 10
length of query: 137
length of database: 14,973,337
effective HSP length: 89
effective length of query: 48
effective length of database: 9,403,895
effective search space: 451386960
effective search space used: 451386960
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)