BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032617
(137 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VXX9|BETL1_ARATH Bet1-like protein At4g14600 OS=Arabidopsis thaliana GN=At4g14600
PE=2 SV=1
Length = 137
Score = 226 bits (576), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 103/137 (75%), Positives = 124/137 (90%)
Query: 1 MASSSHRGGAGGPFYGGAAPYRSREGLTTRPVAGSDEIQLRIDPVNADLDDEITGLRSQV 60
MAS+ HR GAGG YGGAAPYRSREGL+TR AGS+EIQLRIDP+++DLDDEITGL QV
Sbjct: 1 MASNPHRSGAGGSLYGGAAPYRSREGLSTRNAAGSEEIQLRIDPMHSDLDDEITGLHGQV 60
Query: 61 KQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLF 120
+QL+N+AQEI SEA FQ+DFLD+LQMTLI+AQAGVKNN+R+LN SI++ G+NHIMHVVLF
Sbjct: 61 RQLKNIAQEIGSEAKFQRDFLDELQMTLIRAQAGVKNNIRKLNMSIIRSGNNHIMHVVLF 120
Query: 121 ALFLFFILYMWSKMFRR 137
AL +FF+LY+WSKMF+R
Sbjct: 121 ALLVFFVLYIWSKMFKR 137
>sp|Q8L9S0|BETL2_ARATH Bet1-like protein At1g29060 OS=Arabidopsis thaliana GN=At1g29060
PE=2 SV=1
Length = 134
Score = 189 bits (481), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 97/129 (75%), Positives = 115/129 (89%)
Query: 9 GAGGPFYGGAAPYRSREGLTTRPVAGSDEIQLRIDPVNADLDDEITGLRSQVKQLRNVAQ 68
GAGG YGGA PYRSREGL+TR +GS+EIQLRIDP+++DLDDEI GL QV+QL+N+AQ
Sbjct: 6 GAGGSLYGGADPYRSREGLSTRNASGSEEIQLRIDPMHSDLDDEILGLHGQVRQLKNIAQ 65
Query: 69 EIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLFALFLFFIL 128
EI SEA Q+DFLD+LQMTLI+AQAGVKNN+R+LN SI++ G+NHIMHVVLFAL LFFIL
Sbjct: 66 EIGSEAKSQRDFLDELQMTLIRAQAGVKNNIRKLNLSIIRSGNNHIMHVVLFALLLFFIL 125
Query: 129 YMWSKMFRR 137
YMWSKMF+R
Sbjct: 126 YMWSKMFKR 134
>sp|P43682|SFT1_YEAST Protein transport protein SFT1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SFT1 PE=1 SV=1
Length = 97
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 41 RIDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMR 100
R ++ D ++ GL +++ RN+ QEI A ++Q+ +L +KN+
Sbjct: 5 RYSQTESNNDRKLEGLANKLATFRNINQEIGDRAVSDSSVINQMTDSLGSMFTDIKNSSS 64
Query: 101 RLNKSIVKHGSNHIMHVVLFALFLFFILYMWSKMF 135
RL +S+ K G N I +V AL +FFILY K+F
Sbjct: 65 RLTRSL-KAG-NSIWRMVGLALLIFFILYTLFKLF 97
>sp|Q62896|BET1_RAT BET1 homolog OS=Rattus norvegicus GN=Bet1 PE=1 SV=1
Length = 118
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 50 DDEIT-GLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK 108
+D +T LRS+V +++++ EI E Q L ++ + M RL I+
Sbjct: 32 NDRLTESLRSKVTAIKSLSIEIGHEVKNQNKLLAEMDSQFDSTTGFLGKTMGRLK--ILS 89
Query: 109 HGSNH--IMHVVLFALFLFFILYMWSKM 134
GS + +++LF+LF+FF++Y K+
Sbjct: 90 RGSQTKLLCYMMLFSLFVFFVIYWIIKL 117
>sp|O35623|BET1_MOUSE BET1 homolog OS=Mus musculus GN=Bet1 PE=3 SV=1
Length = 118
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 50 DDEIT-GLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK 108
+D +T LRS+V +++++ EI E Q L ++ + M RL I+
Sbjct: 32 NDRLTESLRSKVTAIKSLSIEIGHEVKNQNKLLAEMDSQFDSTTGFLGKTMGRLK--ILS 89
Query: 109 HGSNH--IMHVVLFALFLFFILYMWSKM 134
GS + +++LF+LF+FF++Y K+
Sbjct: 90 RGSQTKLLCYMMLFSLFVFFVIYWIIKL 117
>sp|O15155|BET1_HUMAN BET1 homolog OS=Homo sapiens GN=BET1 PE=1 SV=1
Length = 118
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 56 LRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNH-- 113
LRS+V +++++ EI E Q L ++ + M +L I+ GS
Sbjct: 39 LRSKVTAIKSLSIEIGHEVKTQNKLLAEMDSQFDSTTGFLGKTMGKLK--ILSRGSQTKL 96
Query: 114 IMHVVLFALFLFFILYMW 131
+ +++LF+LF+FFI+Y W
Sbjct: 97 LCYMMLFSLFVFFIIY-W 113
>sp|Q946Y7|SYP61_ARATH Syntaxin-61 OS=Arabidopsis thaliana GN=SYP61 PE=1 SV=1
Length = 245
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 41/81 (50%)
Query: 50 DDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKH 109
D+E+ L V+++ V IH E Q+ +D+L + + ++ +++ + K
Sbjct: 160 DEELDELSKSVQRIGGVGLTIHDELVAQERIIDELDTEMDSTKNRLEFVQKKVGMVMKKA 219
Query: 110 GSNHIMHVVLFALFLFFILYM 130
G+ M ++ F L LF IL++
Sbjct: 220 GAKGQMMMICFLLVLFIILFV 240
>sp|Q94KK6|SYP72_ARATH Syntaxin-72 OS=Arabidopsis thaliana GN=SYP72 PE=2 SV=1
Length = 267
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 63 LRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGS--NHIMHVVLF 120
L+N+A++++ E Q +++++ + A + +KN RL K +V+ S N + ++L
Sbjct: 193 LKNLARDMNEELDKQVPLMEEMETKVDGATSDLKNTNVRLKKQLVQMRSSRNFCIDIILL 252
Query: 121 ALFLFFILYMWSKM 134
+ L + Y+++ +
Sbjct: 253 CVILGIVSYIYNAL 266
>sp|Q9SF29|SYP71_ARATH Syntaxin-71 OS=Arabidopsis thaliana GN=SYP71 PE=1 SV=1
Length = 266
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 63 LRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSI--VKHGSNHIMHVVLF 120
L+N+A +++ E Q +D++ + +A + +KN RL ++ ++ N + +VL
Sbjct: 192 LKNMASDMNEELDRQVPLMDEIDTKVDRATSDLKNTNVRLKDTVNQLRSSRNFCIDIVLL 251
Query: 121 ALFLFFILYMWS 132
+ L Y+++
Sbjct: 252 CIVLGIAAYLYN 263
>sp|C5DSC5|ETT1_ZYGRC Enhancer of translation termination 1 OS=Zygosaccharomyces rouxii
(strain ATCC 2623 / CBS 732 / NBRC 1130 / NCYC 568 /
NRRL Y-229) GN=ETT1 PE=3 SV=1
Length = 411
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Query: 31 PVAGSDEIQLRIDPVNADLDDEITGLR 57
P G+D+IQ+ +D NADLDDE+T L+
Sbjct: 33 PAPGADQIQVEMDE-NADLDDELTQLK 58
>sp|Q4V885|COL12_RAT Collectin-12 OS=Rattus norvegicus GN=Colec12 PE=2 SV=1
Length = 742
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 50 DDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQM---TLIKAQAGVKNNMR 100
+ E++ RS + LR QEI + S KD L++LQ +L+ Q+ +K ++
Sbjct: 105 NSELSTFRSDILDLRQQLQEITEKTSKNKDMLEKLQANGDSLVDRQSQLKETLQ 158
>sp|Q6C3S1|NDE1_YARLI Nuclear distribution protein nudE homolog 1 OS=Yarrowia lipolytica
(strain CLIB 122 / E 150) GN=NDE1 PE=3 SV=1
Length = 461
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 29/58 (50%)
Query: 43 DPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMR 100
D A L+D I+ L S+V + R A + H EA+ + L + +L A VK +R
Sbjct: 63 DKRQAKLEDRISALESEVTEWRKKALDAHKEAASTQQALQREVSSLRDAHKLVKERLR 120
>sp|Q94KK5|SYP73_ARATH Syntaxin-73 OS=Arabidopsis thaliana GN=SYP73 PE=2 SV=1
Length = 263
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 29/51 (56%)
Query: 63 LRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNH 113
L+N+AQ+I+ E Q+ +D++ + KA +K+ RL ++ K S+
Sbjct: 189 LKNMAQDINEELDRQEPLMDEIDTKIDKAATDLKSTNVRLKDTVTKLRSSR 239
>sp|Q8K4Q8|COL12_MOUSE Collectin-12 OS=Mus musculus GN=Colec12 PE=1 SV=1
Length = 742
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 50 DDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQM---TLIKAQAGVKNNMR 100
+ E++ RS + LR QEI + S KD L++LQ +L+ Q+ +K ++
Sbjct: 105 NSELSTFRSDILDLRQQLQEITEKTSKNKDTLEKLQANGDSLVDRQSQLKETLQ 158
>sp|A9JSR5|CC160_XENTR Coiled-coil domain-containing protein 160 homolog OS=Xenopus
tropicalis PE=2 SV=1
Length = 312
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%)
Query: 44 PVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLN 103
P+ A +DD+ +++K LR+ Q+ +SE + K+ LD ++ L + +A KN + L
Sbjct: 98 PIAAHVDDQCIWRENELKVLRHEMQQRYSEGAKFKNQLDACKLELSELKAKDKNTEQELG 157
Query: 104 KS 105
K+
Sbjct: 158 KA 159
>sp|Q94CG2|BET12_ARATH Bet1-like SNARE 1-2 OS=Arabidopsis thaliana GN=BET12 PE=2 SV=4
Length = 130
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/88 (20%), Positives = 38/88 (43%)
Query: 48 DLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV 107
D D+ + L+ +V L+ V +IH E LD++ + A+ + + R
Sbjct: 38 DNDEALENLQDRVSFLKRVTGDIHEEVENHNRLLDKVGNKMDSARGIMSGTINRFKLVFE 97
Query: 108 KHGSNHIMHVVLFALFLFFILYMWSKMF 135
K + ++ + + LF I+Y ++
Sbjct: 98 KKSNRKSCKLIAYFVLLFLIMYYLIRLL 125
>sp|Q62504|MINT_MOUSE Msx2-interacting protein OS=Mus musculus GN=Spen PE=1 SV=2
Length = 3644
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 4 SSHRGGAGGPFYGGAAPYRSREGLTTRPVAGSDEIQLR 41
S RG AGGP YG +REG R + G+ + + R
Sbjct: 105 SGFRGSAGGPAYGPPPSLHAREGRYERRLDGASDNRER 142
>sp|A2AM05|CNTLN_MOUSE Centlein OS=Mus musculus GN=Cntln PE=1 SV=1
Length = 1397
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 29/48 (60%)
Query: 50 DDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKN 97
D +IT +R ++++L+NV ++ + + Q D + QLQ + Q ++N
Sbjct: 321 DMDITLIRKELQELQNVYKQNSAHTAQQADLIQQLQALNMDTQKVLRN 368
>sp|Q99104|MYO5A_MOUSE Unconventional myosin-Va OS=Mus musculus GN=Myo5a PE=1 SV=2
Length = 1853
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 49 LDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK 108
L +EI LR ++Q R+ + I A K DQL L + +K LN IV+
Sbjct: 988 LQEEIAKLRKDLEQTRSEKKSIEERADKYKQETDQLVSNLKEENTLLKQEKETLNHRIVE 1047
Query: 109 HG 110
Sbjct: 1048 QA 1049
>sp|Q0P4A7|SNP47_DANRE Synaptosomal-associated protein 47 OS=Danio rerio GN=snap47 PE=2
SV=1
Length = 419
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 50 DDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNK 104
+ E L+ ++QL+N+A E +E Q + LD L + A + + RR+ K
Sbjct: 363 EAEAQELKQMLQQLKNLALEAETELERQDEALDVLSCSTDHATMNINRHTRRMRK 417
>sp|Q10411|SPO15_SCHPO Sporulation-specific protein 15 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=spo15 PE=1 SV=1
Length = 1957
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 41 RIDPVNADLDDEITGLRSQVKQLRNVAQEIHSEA-SFQKDFLDQLQMTLIKAQAGVKNNM 99
+I+ +N+ LDD+ L S V++L Q++HSE+ S ++ QLQ K Q ++ +
Sbjct: 1461 KIESINSSLDDKSFELASAVEKL-GALQKLHSESLSLMENIKSQLQEAKEKIQVD-ESTI 1518
Query: 100 RRLNKSIVKHGSNH 113
+ L+ I +N+
Sbjct: 1519 QELDHEITASKNNY 1532
>sp|O49873|MLOH1_HORVU MLO protein homolog 1 OS=Hordeum vulgare GN=MLO-H1 PE=3 SV=1
Length = 544
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 88 LIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLFALFLFFILY 129
+ A AGV ++ +++ GS H +H+ +F L +F +LY
Sbjct: 126 FLAAPAGVDVCAKQGKVALMSAGSMHQLHIFIFVLAVFHVLY 167
>sp|B7GSZ2|UVRB_BIFLS UvrABC system protein B OS=Bifidobacterium longum subsp. infantis
(strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 /
S12) GN=uvrB PE=3 SV=1
Length = 703
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 32 VAGSDEIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKA 91
VAG + ++ + + +LD ++ LR Q K+L AQ + ++ + L Q+ +
Sbjct: 256 VAGPERMERALKTIREELDGRLSELRKQGKELE--AQRLDMRTTYDLEMLTQVGVC---- 309
Query: 92 QAGVKNNMRRLN 103
+GV+N R L+
Sbjct: 310 -SGVENYSRHLD 320
>sp|Q9ZK05|ISPT_HELPJ Isoprenyl transferase OS=Helicobacter pylori (strain J99) GN=uppS
PE=3 SV=1
Length = 234
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 61 KQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHV 117
K+LR+ + ++ + KDF L + G KN + R KS++++ NHI ++
Sbjct: 105 KELRDTILRLENDTRYFKDFTQVLAL-----NYGSKNELSRAFKSLLENPPNHINNI 156
>sp|Q3AF97|TIG_CARHZ Trigger factor OS=Carboxydothermus hydrogenoformans (strain Z-2901
/ DSM 6008) GN=tig PE=3 SV=1
Length = 427
Score = 29.3 bits (64), Expect = 7.7, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 32/70 (45%)
Query: 47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSI 106
A LDDE S+ L + +++ + + K+ + + +M + V N + S+
Sbjct: 248 APLDDEFAKDVSEFSTLAELKEDLKKKIAQTKENISREKMEAEVVEKAVDNANVEIPASM 307
Query: 107 VKHGSNHIMH 116
V H HI+H
Sbjct: 308 VNHEVEHILH 317
>sp|Q54316|HLYB_TREHY Hemolysin B OS=Treponema hyodysenteriae GN=tlyB PE=3 SV=1
Length = 828
Score = 29.3 bits (64), Expect = 7.9, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 29/51 (56%)
Query: 56 LRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSI 106
L S+ K+L + +E+H + QK+ + + + +++AG+K + R L I
Sbjct: 501 LNSESKRLIGMEEELHQKVVGQKEAISSISKAIRRSRAGLKTSKRPLGSFI 551
>sp|Q9LPC6|ARK2_ARATH Armadillo repeat-containing kinesin-like protein 2 OS=Arabidopsis
thaliana GN=ARK2 PE=1 SV=2
Length = 894
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 35 SDEIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAG 94
S ++++++D V A+ + ++ V+++ AQ SE +K+F + L+ +K Q
Sbjct: 418 SKKLEVQLDKVIAENERQLKAFDDDVERINRQAQNRISE--VEKNFAEALEKEKLKCQME 475
Query: 95 VKNNMRRLNKSIVKHGSNH 113
++++L + ++ + NH
Sbjct: 476 YMESVKKLEEKLISNQRNH 494
>sp|Q66HR2|MARE1_RAT Microtubule-associated protein RP/EB family member 1 OS=Rattus
norvegicus GN=Mapre1 PE=1 SV=3
Length = 268
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 16 GGAAPYR--SREGLTTRPVAGSDEIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHSE 73
G AAP R + + T P AG + R +P + DDE L QVK L+ +++ E
Sbjct: 156 GSAAPQRPIATQRTTAAPKAGPGMV--RKNPGMGNGDDEAAELMQQVKVLKLTVEDLEKE 213
Query: 74 ASF 76
F
Sbjct: 214 RDF 216
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,964,326
Number of Sequences: 539616
Number of extensions: 1810061
Number of successful extensions: 6441
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 6408
Number of HSP's gapped (non-prelim): 65
length of query: 137
length of database: 191,569,459
effective HSP length: 102
effective length of query: 35
effective length of database: 136,528,627
effective search space: 4778501945
effective search space used: 4778501945
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)