Query 032617
Match_columns 137
No_of_seqs 114 out of 649
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 03:45:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032617.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032617hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3385 V-SNARE [Intracellular 99.9 2.3E-25 5E-30 158.6 9.7 92 42-133 27-118 (118)
2 KOG3202 SNARE protein TLG1/Syn 99.8 4.9E-18 1.1E-22 134.9 12.7 96 36-131 137-233 (235)
3 PF05739 SNARE: SNARE domain; 99.5 5.3E-13 1.2E-17 85.2 9.6 61 48-108 1-61 (63)
4 PF09753 Use1: Membrane fusion 99.3 5.7E-11 1.2E-15 94.9 14.2 90 46-135 162-251 (251)
5 cd00193 t_SNARE Soluble NSF (N 99.2 9.6E-11 2.1E-15 73.0 7.9 58 47-104 2-59 (60)
6 smart00397 t_SNARE Helical reg 99.1 4.6E-10 9.9E-15 71.0 8.2 61 44-104 5-65 (66)
7 KOG3065 SNAP-25 (synaptosome-a 99.0 4E-09 8.7E-14 85.8 9.0 64 43-106 210-273 (273)
8 KOG0812 SNARE protein SED5/Syn 98.5 4.6E-06 9.9E-11 68.2 12.5 82 51-132 227-309 (311)
9 KOG2678 Predicted membrane pro 98.3 1.5E-05 3.3E-10 63.1 11.4 88 49-136 153-241 (244)
10 KOG0810 SNARE protein Syntaxin 98.2 1E-05 2.2E-10 66.8 9.7 56 52-107 207-262 (297)
11 PF03908 Sec20: Sec20; InterP 98.0 0.00024 5.1E-09 48.7 12.0 82 52-133 9-90 (92)
12 COG5074 t-SNARE complex subuni 98.0 7.4E-05 1.6E-09 59.9 10.5 83 50-133 184-270 (280)
13 COG5325 t-SNARE complex subuni 97.9 0.00017 3.7E-09 58.8 10.6 77 47-123 191-270 (283)
14 KOG0809 SNARE protein TLG2/Syn 97.9 0.00012 2.5E-09 60.2 9.0 87 47-133 214-302 (305)
15 PF00957 Synaptobrevin: Synapt 97.8 0.00057 1.2E-08 46.3 10.1 60 49-108 1-63 (89)
16 KOG0811 SNARE protein PEP12/VA 97.7 0.0006 1.3E-08 55.6 11.3 77 47-123 176-254 (269)
17 KOG3251 Golgi SNAP receptor co 97.1 0.021 4.6E-07 45.1 12.4 84 52-136 130-213 (213)
18 PF09753 Use1: Membrane fusion 96.6 0.063 1.4E-06 42.9 12.2 97 37-136 149-249 (251)
19 KOG1666 V-SNARE [Intracellular 96.6 0.05 1.1E-06 43.1 10.9 70 65-134 149-219 (220)
20 KOG0860 Synaptobrevin/VAMP-lik 96.2 0.16 3.5E-06 36.6 11.0 27 81-107 62-88 (116)
21 KOG3894 SNARE protein Syntaxin 96.1 0.12 2.6E-06 43.0 11.1 73 58-130 239-311 (316)
22 PF07798 DUF1640: Protein of u 95.9 0.36 7.7E-06 36.7 12.4 85 50-134 90-175 (177)
23 PF12352 V-SNARE_C: Snare regi 95.9 0.19 4.1E-06 31.9 9.2 60 49-108 6-65 (66)
24 PF10779 XhlA: Haemolysin XhlA 95.9 0.23 5E-06 32.4 9.7 62 69-133 10-71 (71)
25 KOG3208 SNARE protein GS28 [In 95.5 0.21 4.5E-06 39.9 9.9 73 59-131 157-230 (231)
26 KOG0860 Synaptobrevin/VAMP-lik 95.4 0.7 1.5E-05 33.4 12.9 52 45-97 34-85 (116)
27 PF05957 DUF883: Bacterial pro 94.9 0.74 1.6E-05 31.3 11.8 83 46-132 4-91 (94)
28 KOG0811 SNARE protein PEP12/VA 94.5 1 2.2E-05 36.9 11.6 94 37-132 174-267 (269)
29 PF08372 PRT_C: Plant phosphor 94.3 0.88 1.9E-05 34.4 10.0 56 32-96 35-90 (156)
30 PRK10884 SH3 domain-containing 93.7 1.3 2.8E-05 34.8 10.3 44 61-104 114-157 (206)
31 COG5325 t-SNARE complex subuni 93.2 1.8 3.9E-05 35.6 10.7 81 47-128 198-278 (283)
32 PF03908 Sec20: Sec20; InterP 92.9 2 4.3E-05 29.1 10.6 78 60-137 7-91 (92)
33 PF04210 MtrG: Tetrahydrometha 92.7 1.2 2.5E-05 29.4 7.3 58 73-135 13-70 (70)
34 KOG0812 SNARE protein SED5/Syn 92.7 1.6 3.6E-05 36.2 9.9 67 37-104 221-287 (311)
35 PHA02650 hypothetical protein; 91.8 0.39 8.6E-06 32.4 4.4 57 81-137 13-75 (81)
36 PF11902 DUF3422: Protein of u 91.7 4.7 0.0001 35.0 12.0 56 49-105 310-367 (420)
37 PF07889 DUF1664: Protein of u 91.7 3.4 7.3E-05 30.2 9.5 62 46-107 63-124 (126)
38 PF08614 ATG16: Autophagy prot 91.4 2.7 5.8E-05 32.3 9.3 62 47-108 112-173 (194)
39 PRK00846 hypothetical protein; 91.2 2.7 5.9E-05 28.2 8.0 51 48-98 10-60 (77)
40 PF01519 DUF16: Protein of unk 90.8 2.6 5.7E-05 29.8 7.9 49 48-96 50-98 (102)
41 PF04102 SlyX: SlyX; InterPro 90.7 2.4 5.2E-05 27.5 7.2 50 50-99 3-52 (69)
42 KOG0862 Synaptobrevin/VAMP-lik 90.5 2.4 5.3E-05 33.7 8.4 78 53-131 136-214 (216)
43 TIGR01149 mtrG N5-methyltetrah 90.3 3.1 6.6E-05 27.4 7.4 56 73-133 13-68 (70)
44 PRK00736 hypothetical protein; 89.8 3.8 8.2E-05 26.6 7.6 48 50-97 4-51 (68)
45 KOG0810 SNARE protein Syntaxin 89.5 7.1 0.00015 32.4 10.7 92 35-131 198-290 (297)
46 COG4064 MtrG Tetrahydromethano 88.6 5.3 0.00011 26.5 8.1 60 72-136 15-74 (75)
47 TIGR00383 corA magnesium Mg(2+ 88.3 9.4 0.0002 30.9 10.7 21 113-133 293-313 (318)
48 PRK01026 tetrahydromethanopter 88.0 6.2 0.00013 26.5 7.8 56 73-133 16-71 (77)
49 PF11166 DUF2951: Protein of u 88.0 7.2 0.00016 27.2 11.2 46 47-92 7-52 (98)
50 PRK00295 hypothetical protein; 87.7 5.7 0.00012 25.7 7.6 48 50-97 4-51 (68)
51 PF07340 Herpes_IE1: Cytomegal 87.6 5.7 0.00012 34.1 9.1 100 8-108 13-140 (392)
52 KOG1666 V-SNARE [Intracellular 87.4 4.3 9.2E-05 32.3 7.7 66 69-134 142-215 (220)
53 PRK02119 hypothetical protein; 87.0 6.7 0.00015 25.8 8.0 51 47-97 5-55 (73)
54 PHA02844 putative transmembran 86.8 0.79 1.7E-05 30.6 2.9 21 81-101 13-33 (75)
55 PRK04325 hypothetical protein; 86.7 7 0.00015 25.8 7.9 48 50-97 8-55 (74)
56 PRK02793 phi X174 lysis protei 86.4 7.2 0.00016 25.5 7.9 50 48-97 5-54 (72)
57 PF07798 DUF1640: Protein of u 86.3 12 0.00027 28.2 12.9 91 36-130 83-174 (177)
58 PRK04406 hypothetical protein; 86.3 7.5 0.00016 25.7 7.6 50 48-97 8-57 (75)
59 PF00957 Synaptobrevin: Synapt 84.7 9.3 0.0002 25.3 11.4 52 47-99 10-61 (89)
60 PF05531 NPV_P10: Nucleopolyhe 84.6 4.8 0.0001 26.9 5.8 50 47-96 14-66 (75)
61 PRK10404 hypothetical protein; 83.8 12 0.00027 26.1 10.6 85 48-132 6-98 (101)
62 PF15106 TMEM156: TMEM156 prot 83.3 1.5 3.3E-05 34.8 3.5 25 112-136 175-199 (226)
63 PF15188 CCDC-167: Coiled-coil 83.0 12 0.00027 25.5 8.6 26 83-108 40-65 (85)
64 PHA02819 hypothetical protein; 82.5 2.6 5.7E-05 27.8 3.8 26 81-107 13-38 (71)
65 PF05478 Prominin: Prominin; 82.4 23 0.0005 33.0 11.4 7 61-67 342-348 (806)
66 PF04728 LPP: Lipoprotein leuc 82.2 10 0.00022 23.9 6.5 38 50-87 16-53 (56)
67 PF06679 DUF1180: Protein of u 82.1 1.6 3.4E-05 33.3 3.1 20 117-136 99-118 (163)
68 PF09889 DUF2116: Uncharacteri 81.7 1.7 3.6E-05 27.8 2.6 18 117-134 41-58 (59)
69 PHA03054 IMV membrane protein; 81.6 2.3 4.9E-05 28.2 3.3 21 82-102 14-34 (72)
70 COG5074 t-SNARE complex subuni 81.5 27 0.00059 28.4 10.3 89 37-126 179-268 (280)
71 PF01102 Glycophorin_A: Glycop 81.2 2.2 4.7E-05 31.0 3.4 11 124-134 81-91 (122)
72 KOG3202 SNARE protein TLG1/Syn 80.8 28 0.0006 28.0 11.0 21 88-108 182-202 (235)
73 PF03904 DUF334: Domain of unk 80.7 28 0.0006 28.0 11.8 45 46-90 63-108 (230)
74 COG2900 SlyX Uncharacterized p 80.6 14 0.0003 24.5 7.8 50 47-96 4-53 (72)
75 PRK10132 hypothetical protein; 78.9 20 0.00044 25.3 11.1 20 113-132 85-104 (108)
76 PRK09973 putative outer membra 78.6 11 0.00024 25.8 6.0 46 36-85 27-72 (85)
77 PF07889 DUF1664: Protein of u 77.4 22 0.00049 25.9 7.8 58 50-107 49-110 (126)
78 PF01601 Corona_S2: Coronaviru 77.3 13 0.00029 33.7 7.8 108 2-109 207-321 (610)
79 PF05283 MGC-24: Multi-glycosy 76.5 2.3 5.1E-05 33.0 2.5 22 115-136 164-185 (186)
80 PHA02975 hypothetical protein; 76.4 3.2 6.9E-05 27.3 2.7 19 82-100 14-32 (69)
81 PF10805 DUF2730: Protein of u 76.3 20 0.00043 25.0 7.1 44 47-90 45-90 (106)
82 PRK04654 sec-independent trans 76.1 31 0.00067 27.5 8.7 53 52-104 28-86 (214)
83 PRK15396 murein lipoprotein; P 75.9 18 0.0004 24.2 6.4 48 36-87 28-75 (78)
84 PHA02692 hypothetical protein; 75.4 5.7 0.00012 26.2 3.8 19 83-101 15-33 (70)
85 PF03904 DUF334: Domain of unk 75.4 41 0.00089 27.0 11.2 33 37-69 61-93 (230)
86 PRK11637 AmiB activator; Provi 74.6 53 0.0012 28.0 11.3 56 52-107 76-131 (428)
87 PF13800 Sigma_reg_N: Sigma fa 74.2 3.5 7.5E-05 28.0 2.7 13 104-116 3-15 (96)
88 PF02009 Rifin_STEVOR: Rifin/s 73.9 3.7 8.1E-05 34.1 3.2 20 117-136 264-283 (299)
89 PF00523 Fusion_gly: Fusion gl 73.8 2.5 5.3E-05 37.5 2.3 49 81-130 440-488 (490)
90 PF10831 DUF2556: Protein of u 73.8 5 0.00011 24.7 3.0 22 113-134 4-25 (53)
91 PF07219 HemY_N: HemY protein 73.2 4.8 0.0001 27.9 3.3 22 114-135 16-37 (108)
92 PRK09973 putative outer membra 73.2 27 0.00058 23.9 7.0 44 52-95 25-68 (85)
93 cd00179 SynN Syntaxin N-termin 72.4 32 0.0007 24.5 7.7 59 49-107 11-69 (151)
94 PF11932 DUF3450: Protein of u 72.3 47 0.001 26.3 10.2 58 37-94 39-99 (251)
95 PF02970 TBCA: Tubulin binding 72.3 28 0.0006 23.7 6.9 58 51-109 21-78 (90)
96 PHA02819 hypothetical protein; 71.0 3.5 7.6E-05 27.2 2.0 12 123-134 58-69 (71)
97 PF01601 Corona_S2: Coronaviru 70.4 1.5 3.3E-05 39.6 0.2 43 46-88 483-531 (610)
98 PF14257 DUF4349: Domain of un 70.1 53 0.0011 26.0 10.8 12 126-137 251-262 (262)
99 PRK11637 AmiB activator; Provi 70.0 67 0.0015 27.4 10.2 37 71-107 88-124 (428)
100 TIGR02956 TMAO_torS TMAO reduc 69.4 74 0.0016 29.3 10.9 12 96-107 316-327 (968)
101 PRK13454 F0F1 ATP synthase sub 68.7 5.2 0.00011 30.5 2.8 6 125-130 41-46 (181)
102 PF14316 DUF4381: Domain of un 68.3 6.9 0.00015 28.6 3.3 19 118-136 28-46 (146)
103 PF12575 DUF3753: Protein of u 68.2 11 0.00024 25.0 3.9 24 81-104 13-36 (72)
104 KOG0862 Synaptobrevin/VAMP-lik 68.0 60 0.0013 25.9 8.9 26 63-88 133-158 (216)
105 PRK10884 SH3 domain-containing 67.8 57 0.0012 25.5 11.7 59 42-107 109-167 (206)
106 KOG3251 Golgi SNAP receptor co 67.6 61 0.0013 25.8 9.0 78 46-131 135-212 (213)
107 PRK09546 zntB zinc transporter 65.4 74 0.0016 26.0 10.8 21 113-133 299-319 (324)
108 PRK09174 F0F1 ATP synthase sub 65.4 7.5 0.00016 30.3 3.2 7 125-131 63-69 (204)
109 PRK13454 F0F1 ATP synthase sub 65.2 7.9 0.00017 29.5 3.2 21 113-133 34-54 (181)
110 PF09577 Spore_YpjB: Sporulati 64.7 49 0.0011 26.5 7.8 24 112-135 198-222 (232)
111 PF04906 Tweety: Tweety; Inte 64.7 58 0.0013 28.0 8.7 8 11-18 78-85 (406)
112 PF14523 Syntaxin_2: Syntaxin- 64.5 40 0.00086 22.5 6.8 57 51-108 3-59 (102)
113 PF05440 MtrB: Tetrahydrometha 64.2 3 6.6E-05 29.2 0.7 59 70-128 35-93 (97)
114 COG3905 Predicted transcriptio 64.0 29 0.00062 23.7 5.4 61 46-106 10-73 (83)
115 PRK13455 F0F1 ATP synthase sub 63.8 7.5 0.00016 29.4 2.8 19 113-131 29-47 (184)
116 PF04277 OAD_gamma: Oxaloaceta 63.5 11 0.00025 24.4 3.3 10 125-134 23-32 (79)
117 TIGR01195 oadG_fam sodium pump 63.3 12 0.00027 25.0 3.5 21 115-135 16-36 (82)
118 PF04912 Dynamitin: Dynamitin 63.3 63 0.0014 27.3 8.6 51 56-107 314-364 (388)
119 PRK15396 murein lipoprotein; P 63.0 43 0.00093 22.4 7.0 49 52-107 26-74 (78)
120 COG4942 Membrane-bound metallo 62.9 87 0.0019 27.4 9.4 61 47-107 41-101 (420)
121 PHA03395 p10 fibrous body prot 62.7 36 0.00079 23.3 5.7 55 39-95 8-65 (87)
122 PF06143 Baculo_11_kDa: Baculo 62.6 31 0.00066 23.5 5.3 19 88-106 19-37 (84)
123 PF09451 ATG27: Autophagy-rela 62.2 8.6 0.00019 31.0 3.1 25 111-135 199-223 (268)
124 PF07097 DUF1359: Protein of u 61.5 24 0.00052 24.4 4.7 38 50-87 8-45 (102)
125 KOG0859 Synaptobrevin/VAMP-lik 61.4 58 0.0013 25.9 7.4 13 53-65 127-139 (217)
126 PF12575 DUF3753: Protein of u 61.3 6 0.00013 26.3 1.6 6 128-133 65-70 (72)
127 PHA03386 P10 fibrous body prot 60.8 36 0.00077 23.7 5.5 46 47-96 15-60 (94)
128 PF04728 LPP: Lipoprotein leuc 60.8 40 0.00086 21.3 8.2 50 51-107 3-52 (56)
129 PF15183 MRAP: Melanocortin-2 60.8 12 0.00025 25.7 3.0 20 113-132 42-61 (90)
130 PF04639 Baculo_E56: Baculovir 60.7 4.1 8.9E-05 33.8 1.0 23 113-135 279-301 (305)
131 PF06738 DUF1212: Protein of u 60.6 43 0.00093 25.0 6.6 30 80-109 69-98 (193)
132 PF01034 Syndecan: Syndecan do 60.4 2.8 6E-05 27.2 -0.1 20 117-136 19-38 (64)
133 PF05791 Bacillus_HBL: Bacillu 60.1 74 0.0016 24.2 9.1 61 49-109 101-161 (184)
134 PF05393 Hum_adeno_E3A: Human 60.0 12 0.00027 25.8 3.1 21 113-133 34-54 (94)
135 cd06845 Bcl-2_like Apoptosis r 59.1 64 0.0014 23.2 8.7 70 58-130 34-104 (144)
136 PF13747 DUF4164: Domain of un 59.1 54 0.0012 22.3 8.3 52 55-106 36-87 (89)
137 PF01544 CorA: CorA-like Mg2+ 59.0 83 0.0018 24.4 10.0 49 51-105 192-240 (292)
138 KOG2678 Predicted membrane pro 58.9 96 0.0021 25.1 11.0 21 115-135 217-237 (244)
139 KOG4603 TBP-1 interacting prot 58.8 85 0.0018 24.5 8.4 61 47-107 82-144 (201)
140 PF14362 DUF4407: Domain of un 58.6 96 0.0021 25.0 10.3 58 77-135 227-285 (301)
141 PF12669 P12: Virus attachment 58.4 15 0.00033 23.0 3.1 16 121-136 6-22 (58)
142 TIGR01477 RIFIN variant surfac 58.3 12 0.00025 32.0 3.3 20 117-136 318-337 (353)
143 PF03670 UPF0184: Uncharacteri 58.0 44 0.00094 22.8 5.4 29 79-107 33-61 (83)
144 PTZ00046 rifin; Provisional 57.9 12 0.00026 32.0 3.3 20 117-136 323-342 (358)
145 PHA03164 hypothetical protein; 57.8 10 0.00022 25.6 2.3 17 115-131 65-81 (88)
146 COG4420 Predicted membrane pro 57.6 43 0.00094 26.2 6.1 36 72-107 21-56 (191)
147 COG4949 Uncharacterized membra 57.0 1.2E+02 0.0027 25.8 9.0 55 48-103 309-365 (424)
148 KOG2391 Vacuolar sorting prote 56.9 1.3E+02 0.0027 25.8 12.6 61 43-103 217-277 (365)
149 PF05546 She9_MDM33: She9 / Md 56.8 92 0.002 24.7 7.9 27 110-136 151-177 (207)
150 PF02646 RmuC: RmuC family; I 56.4 1.1E+02 0.0024 25.1 9.5 63 49-115 11-73 (304)
151 PRK00708 sec-independent trans 56.1 1E+02 0.0022 24.5 8.7 40 52-91 28-69 (209)
152 PHA02844 putative transmembran 56.0 22 0.00047 23.8 3.6 18 120-137 57-74 (75)
153 PF06024 DUF912: Nucleopolyhed 55.4 8.3 0.00018 26.8 1.7 19 114-132 64-82 (101)
154 PRK01770 sec-independent trans 55.1 95 0.0021 23.8 8.4 38 52-90 28-65 (171)
155 PF09548 Spore_III_AB: Stage I 54.9 61 0.0013 24.2 6.5 60 61-129 108-168 (170)
156 PRK09174 F0F1 ATP synthase sub 54.8 13 0.00029 28.9 2.9 21 113-133 56-76 (204)
157 PF14712 Snapin_Pallidin: Snap 54.7 60 0.0013 21.4 9.0 69 36-105 17-90 (92)
158 PF06692 MNSV_P7B: Melon necro 54.6 14 0.0003 23.4 2.4 18 115-132 16-33 (61)
159 smart00503 SynN Syntaxin N-ter 54.4 64 0.0014 21.7 7.7 60 48-107 12-71 (117)
160 PF00261 Tropomyosin: Tropomyo 54.3 59 0.0013 25.6 6.6 62 48-109 12-73 (237)
161 TIGR00540 hemY_coli hemY prote 54.1 15 0.00032 30.9 3.3 20 115-134 42-61 (409)
162 PF04420 CHD5: CHD5-like prote 54.1 19 0.00042 26.9 3.6 31 78-108 72-102 (161)
163 PRK01919 tatB sec-independent 53.9 99 0.0022 23.7 8.7 28 52-79 28-55 (169)
164 PF14715 FixP_N: N-terminal do 53.8 22 0.00047 21.9 3.2 20 113-132 22-41 (51)
165 KOG4331 Polytopic membrane pro 53.4 86 0.0019 29.8 8.2 69 39-107 345-416 (865)
166 PRK11466 hybrid sensory histid 53.3 1.8E+02 0.0038 26.8 10.3 8 126-133 343-350 (914)
167 PF00015 MCPsignal: Methyl-acc 53.0 90 0.002 23.0 8.4 16 74-89 123-138 (213)
168 KOG3633 BAG family molecular c 52.8 1.1E+02 0.0024 24.0 8.3 18 1-18 14-31 (219)
169 PF05545 FixQ: Cbb3-type cytoc 52.5 15 0.00033 21.9 2.3 16 117-132 16-31 (49)
170 PF04277 OAD_gamma: Oxaloaceta 52.2 23 0.00049 22.9 3.3 18 118-135 12-29 (79)
171 PHA03240 envelope glycoprotein 52.1 16 0.00035 29.3 3.0 19 114-133 214-232 (258)
172 PF00261 Tropomyosin: Tropomyo 52.1 1.1E+02 0.0025 23.9 8.3 61 47-107 88-148 (237)
173 PRK10747 putative protoheme IX 51.9 17 0.00038 30.5 3.4 21 114-134 41-61 (398)
174 KOG0946 ER-Golgi vesicle-tethe 51.8 84 0.0018 30.0 7.8 66 42-107 662-727 (970)
175 TIGR01010 BexC_CtrB_KpsE polys 51.3 1.4E+02 0.003 24.7 8.7 26 80-105 279-304 (362)
176 PF10717 ODV-E18: Occlusion-de 51.2 19 0.0004 24.6 2.8 9 117-125 29-37 (85)
177 PF15361 RIC3: Resistance to i 51.1 22 0.00047 26.6 3.4 12 125-136 95-106 (152)
178 PRK13729 conjugal transfer pil 51.1 1.6E+02 0.0035 26.2 9.2 50 46-95 71-120 (475)
179 COG4575 ElaB Uncharacterized c 51.1 86 0.0019 22.2 10.8 55 45-99 13-68 (104)
180 PF06013 WXG100: Proteins of 1 51.0 57 0.0012 20.1 8.4 54 54-107 7-68 (86)
181 PRK10600 nitrate/nitrite senso 50.8 1.2E+02 0.0025 26.5 8.5 8 126-133 140-147 (569)
182 PF09527 ATPase_gene1: Putativ 50.6 35 0.00076 20.6 3.8 26 111-136 30-55 (55)
183 PF10498 IFT57: Intra-flagella 50.4 55 0.0012 27.8 6.1 56 53-108 289-346 (359)
184 PRK03814 oxaloacetate decarbox 50.4 26 0.00057 23.7 3.5 9 125-133 26-34 (85)
185 PF13150 DUF3989: Protein of u 50.4 43 0.00092 22.7 4.5 24 111-134 26-49 (85)
186 PF06682 DUF1183: Protein of u 50.3 15 0.00033 30.8 2.7 19 114-132 158-176 (318)
187 PRK10573 type IV pilin biogene 50.1 1.4E+02 0.003 25.0 8.5 14 94-107 341-354 (399)
188 PF14147 Spore_YhaL: Sporulati 49.6 23 0.00051 22.0 2.8 22 115-136 3-24 (52)
189 PF14257 DUF4349: Domain of un 49.5 1.1E+02 0.0025 24.1 7.6 20 69-88 166-185 (262)
190 PRK15048 methyl-accepting chem 49.3 1.8E+02 0.0039 25.3 10.2 58 50-107 269-326 (553)
191 PF05568 ASFV_J13L: African sw 49.2 22 0.00049 27.0 3.2 9 126-134 43-51 (189)
192 PRK08475 F0F1 ATP synthase sub 49.1 22 0.00048 26.6 3.2 22 113-134 25-46 (167)
193 PF05644 Miff: Mitochondrial a 49.0 61 0.0013 26.3 5.9 48 90-137 199-246 (246)
194 PF02646 RmuC: RmuC family; I 49.0 1.5E+02 0.0032 24.3 8.4 45 59-103 234-278 (304)
195 PRK01371 sec-independent trans 49.0 63 0.0014 23.9 5.5 49 51-99 27-95 (137)
196 PHA02849 putative transmembran 49.0 30 0.00065 23.4 3.5 9 126-134 32-40 (82)
197 COG3190 FliO Flagellar biogene 48.9 21 0.00046 26.5 3.0 20 117-136 31-50 (137)
198 PF14018 DUF4234: Domain of un 48.7 55 0.0012 20.9 4.7 38 99-136 26-66 (75)
199 PF10256 Erf4: Golgin subfamil 48.6 69 0.0015 22.2 5.6 16 94-109 34-49 (118)
200 PF06422 PDR_CDR: CDR ABC tran 48.6 28 0.0006 24.1 3.4 24 112-135 50-73 (103)
201 PF12495 Vip3A_N: Vegetative i 48.5 93 0.002 23.1 6.3 74 33-107 35-115 (177)
202 PF12718 Tropomyosin_1: Tropom 48.2 1.1E+02 0.0023 22.5 8.2 62 48-109 46-110 (143)
203 KOG2196 Nuclear porin [Nuclear 48.0 1E+02 0.0022 25.1 7.0 31 46-76 108-138 (254)
204 PF08172 CASP_C: CASP C termin 48.0 28 0.00061 28.1 3.8 19 113-131 222-240 (248)
205 PF05478 Prominin: Prominin; 48.0 2.3E+02 0.0049 26.5 10.2 18 62-79 361-378 (806)
206 PF06682 DUF1183: Protein of u 47.9 21 0.00045 30.0 3.1 22 115-136 156-177 (318)
207 PF12420 DUF3671: Protein of u 47.9 25 0.00054 24.7 3.1 22 115-136 81-102 (104)
208 COG4736 CcoQ Cbb3-type cytochr 47.5 25 0.00054 22.5 2.8 19 115-133 13-31 (60)
209 TIGR02120 GspF general secreti 47.5 1.6E+02 0.0035 24.6 8.5 12 123-134 381-392 (399)
210 PF04568 IATP: Mitochondrial A 47.4 53 0.0011 23.0 4.7 29 61-89 72-100 (100)
211 PRK06231 F0F1 ATP synthase sub 47.2 24 0.00051 27.5 3.2 19 116-134 54-72 (205)
212 TIGR02848 spore_III_AC stage I 46.8 63 0.0014 20.9 4.6 36 100-135 17-55 (64)
213 PF04799 Fzo_mitofusin: fzo-li 46.3 1.3E+02 0.0029 23.0 7.5 9 57-65 108-116 (171)
214 KOG0250 DNA repair protein RAD 46.1 2.6E+02 0.0057 27.5 10.3 54 50-103 660-713 (1074)
215 KOG3894 SNARE protein Syntaxin 46.1 1.1E+02 0.0024 25.7 7.1 29 42-70 213-241 (316)
216 PF15030 DUF4527: Protein of u 45.9 1.7E+02 0.0036 24.0 8.3 56 54-109 12-67 (277)
217 TIGR00782 ccoP cytochrome c ox 45.8 24 0.00051 28.6 3.2 21 112-132 27-47 (285)
218 PF06084 Cytomega_TRL10: Cytom 45.6 11 0.00024 27.5 1.0 12 118-129 69-80 (150)
219 PF08006 DUF1700: Protein of u 45.4 1.3E+02 0.0027 22.5 7.5 25 54-78 44-68 (181)
220 PRK04098 sec-independent trans 45.4 1.3E+02 0.0029 22.8 7.9 52 52-104 28-79 (158)
221 PF01105 EMP24_GP25L: emp24/gp 45.4 8.8 0.00019 27.6 0.5 11 125-135 172-182 (183)
222 PRK07352 F0F1 ATP synthase sub 45.3 27 0.00058 26.1 3.2 22 113-134 22-43 (174)
223 PRK13415 flagella biosynthesis 45.3 26 0.00055 28.0 3.2 21 115-135 69-89 (219)
224 PF05791 Bacillus_HBL: Bacillu 45.3 1.3E+02 0.0029 22.7 7.2 50 47-96 131-180 (184)
225 PRK05585 yajC preprotein trans 45.0 25 0.00054 24.7 2.8 18 115-132 18-35 (106)
226 PF05565 Sipho_Gp157: Siphovir 44.7 1.3E+02 0.0028 22.4 8.8 67 36-102 25-91 (162)
227 PHA00547 hypothetical protein 44.6 27 0.00059 29.2 3.3 23 113-135 37-59 (337)
228 PHA02955 hypothetical protein; 44.2 31 0.00068 27.4 3.5 22 114-135 180-203 (213)
229 PF11239 DUF3040: Protein of u 44.1 91 0.002 20.5 5.7 23 79-101 9-31 (82)
230 PF04912 Dynamitin: Dynamitin 44.1 2E+02 0.0043 24.3 9.6 51 53-103 331-381 (388)
231 PHA03231 glycoprotein BALF4; P 43.8 1.3E+02 0.0028 28.7 7.9 18 117-134 709-726 (829)
232 PF09548 Spore_III_AB: Stage I 43.6 1.2E+02 0.0027 22.5 6.6 30 68-97 120-149 (170)
233 PRK03814 oxaloacetate decarbox 43.3 39 0.00085 22.9 3.4 24 113-136 18-41 (85)
234 COG4068 Uncharacterized protei 43.1 34 0.00073 22.0 2.9 16 118-133 46-61 (64)
235 PRK02793 phi X174 lysis protei 43.0 92 0.002 20.2 6.3 30 72-101 15-44 (72)
236 PRK14750 kdpF potassium-transp 42.7 51 0.0011 18.0 3.1 17 119-135 8-24 (29)
237 PF08651 DASH_Duo1: DASH compl 42.2 99 0.0021 20.5 5.2 30 79-108 8-37 (78)
238 PF05781 MRVI1: MRVI1 protein; 42.1 54 0.0012 29.5 5.0 18 86-103 460-477 (538)
239 PHA03295 envelope glycoprotein 41.9 31 0.00068 32.1 3.6 26 111-136 687-712 (714)
240 PF15106 TMEM156: TMEM156 prot 41.9 29 0.00062 27.7 2.9 26 111-136 177-202 (226)
241 PF12064 DUF3544: Domain of un 41.8 57 0.0012 25.4 4.4 54 8-63 67-123 (207)
242 PRK10856 cytoskeletal protein 41.7 26 0.00057 29.3 2.9 17 116-132 118-134 (331)
243 KOG3156 Uncharacterized membra 41.6 1.8E+02 0.0039 23.2 12.2 98 37-134 87-218 (220)
244 PF12718 Tropomyosin_1: Tropom 41.5 1.4E+02 0.003 21.9 9.0 59 49-107 12-70 (143)
245 PF10183 ESSS: ESSS subunit of 41.3 30 0.00065 24.1 2.7 22 112-133 60-81 (105)
246 PRK00965 tetrahydromethanopter 41.2 13 0.00028 26.0 0.8 32 70-101 36-67 (96)
247 PF15205 PLAC9: Placenta-speci 41.1 1E+02 0.0023 20.3 5.1 28 37-64 22-49 (74)
248 CHL00019 atpF ATP synthase CF0 40.7 34 0.00074 25.8 3.2 18 117-134 31-48 (184)
249 PHA02855 anti-apoptotic membra 40.7 1.4E+02 0.003 23.0 6.4 18 117-134 157-174 (180)
250 KOG2825 Putative arsenite-tran 40.4 43 0.00094 27.9 3.8 77 55-131 165-241 (323)
251 KOG3312 Predicted membrane pro 40.0 1.3E+02 0.0028 23.0 6.0 17 71-87 40-56 (186)
252 PF00509 Hemagglutinin: Haemag 40.0 2E+02 0.0043 26.1 8.1 55 48-108 400-456 (550)
253 KOG0982 Centrosomal protein Nu 39.8 2.7E+02 0.0059 24.7 8.7 60 48-107 308-367 (502)
254 TIGR03752 conj_TIGR03752 integ 39.8 2.7E+02 0.0059 24.8 9.0 72 36-107 69-144 (472)
255 PF14992 TMCO5: TMCO5 family 39.7 2.2E+02 0.0047 23.6 12.1 62 27-89 107-168 (280)
256 PF05335 DUF745: Protein of un 39.5 1.8E+02 0.0039 22.5 9.5 58 50-107 115-172 (188)
257 CHL00118 atpG ATP synthase CF0 39.3 39 0.00084 24.8 3.2 19 115-133 27-45 (156)
258 PF04740 LXG: LXG domain of WX 39.2 1.6E+02 0.0035 22.0 7.4 28 81-108 140-167 (204)
259 TIGR02833 spore_III_AB stage I 39.1 1.6E+02 0.0034 22.1 6.6 62 60-130 107-169 (170)
260 COG3071 HemY Uncharacterized e 39.0 31 0.00067 29.9 2.9 19 115-133 42-60 (400)
261 PF01105 EMP24_GP25L: emp24/gp 38.9 7.7 0.00017 28.0 -0.7 21 112-132 155-175 (183)
262 COG3630 OadG Na+-transporting 38.8 48 0.001 22.6 3.3 10 125-134 29-38 (84)
263 PF05803 Chordopox_L2: Chordop 38.6 1.3E+02 0.0028 20.6 7.3 33 69-101 10-42 (87)
264 PLN00180 NDF6 (NDH-dependent f 38.5 53 0.0012 25.1 3.8 19 49-67 157-175 (180)
265 PRK00295 hypothetical protein; 38.3 1.1E+02 0.0023 19.7 6.3 23 73-95 13-35 (68)
266 PF05701 WEMBL: Weak chloropla 38.3 2.9E+02 0.0062 24.5 9.1 49 51-99 41-89 (522)
267 PF07326 DUF1466: Protein of u 38.2 42 0.00091 26.9 3.4 28 47-74 197-224 (233)
268 PF04678 DUF607: Protein of un 38.2 1.7E+02 0.0038 22.0 8.9 9 80-88 65-73 (180)
269 PRK08307 stage III sporulation 38.2 1.7E+02 0.0037 21.9 7.9 62 60-130 108-170 (171)
270 PHA02657 hypothetical protein; 37.9 55 0.0012 22.6 3.5 9 126-134 42-50 (95)
271 PF05957 DUF883: Bacterial pro 37.8 1.2E+02 0.0026 20.1 11.4 80 57-136 8-92 (94)
272 PF01213 CAP_N: Adenylate cycl 37.8 1.8E+02 0.0039 24.3 7.2 30 55-84 52-81 (312)
273 TIGR01478 STEVOR variant surfa 37.7 43 0.00093 27.9 3.4 22 112-133 261-283 (295)
274 PF08637 NCA2: ATP synthase re 37.5 1.9E+02 0.0041 23.8 7.3 82 51-135 94-183 (290)
275 cd01324 cbb3_Oxidase_CcoQ Cyto 37.5 35 0.00075 20.6 2.2 17 117-133 17-33 (48)
276 smart00337 BCL BCL (B-Cell lym 37.4 1.3E+02 0.0028 20.4 7.3 61 70-130 4-66 (100)
277 PF00672 HAMP: HAMP domain; I 37.4 52 0.0011 19.9 3.2 10 124-133 12-21 (70)
278 COG5278 Predicted periplasmic 37.3 2E+02 0.0044 22.6 11.5 64 36-101 104-172 (207)
279 PF10602 RPN7: 26S proteasome 37.2 1.8E+02 0.0038 21.8 7.7 61 42-108 5-65 (177)
280 PRK00736 hypothetical protein; 37.2 1.1E+02 0.0025 19.6 6.3 31 73-103 13-43 (68)
281 TIGR02230 ATPase_gene1 F0F1-AT 36.9 61 0.0013 22.7 3.7 23 113-135 74-96 (100)
282 PTZ00370 STEVOR; Provisional 36.9 45 0.00098 27.8 3.5 22 112-133 257-279 (296)
283 PF01519 DUF16: Protein of unk 36.7 1.5E+02 0.0033 20.9 9.2 47 48-95 34-83 (102)
284 COG4393 Predicted membrane pro 36.4 88 0.0019 26.9 5.1 42 95-136 181-222 (405)
285 PF07466 DUF1517: Protein of u 36.0 34 0.00074 28.2 2.7 12 7-18 5-16 (289)
286 PRK09039 hypothetical protein; 36.0 2.6E+02 0.0057 23.4 9.8 55 47-101 133-187 (343)
287 COG2034 Predicted membrane pro 36.0 67 0.0015 22.0 3.6 25 113-137 61-85 (85)
288 PF00015 MCPsignal: Methyl-acc 35.9 1.8E+02 0.0038 21.4 10.3 58 49-106 133-190 (213)
289 PHA02682 ORF080 virion core pr 35.6 1.8E+02 0.0039 23.3 6.5 40 69-108 219-258 (280)
290 PF11169 DUF2956: Protein of u 35.5 1.6E+02 0.0035 20.8 7.4 70 62-131 24-102 (103)
291 PF13865 FoP_duplication: C-te 35.5 1.3E+02 0.0027 19.6 5.0 13 30-42 37-49 (74)
292 PRK00404 tatB sec-independent 35.4 1.9E+02 0.0041 21.6 7.5 39 52-91 28-66 (141)
293 PF04995 CcmD: Heme exporter p 35.2 70 0.0015 18.8 3.3 21 113-133 8-28 (46)
294 PF06459 RR_TM4-6: Ryanodine R 35.2 1.3E+02 0.0028 24.7 5.9 47 88-135 148-194 (274)
295 PRK09793 methyl-accepting prot 35.2 3.1E+02 0.0066 23.9 10.2 49 55-103 272-320 (533)
296 PF07195 FliD_C: Flagellar hoo 35.1 1.9E+02 0.0041 22.6 6.7 59 50-108 177-236 (239)
297 PTZ00464 SNF-7-like protein; P 35.1 1.6E+02 0.0034 23.2 6.2 36 52-89 103-138 (211)
298 PF05283 MGC-24: Multi-glycosy 34.8 35 0.00075 26.5 2.4 23 111-133 163-185 (186)
299 PF09155 DUF1940: Domain of un 34.8 1.8E+02 0.004 21.3 6.5 63 72-134 40-112 (143)
300 PF05552 TM_helix: Conserved T 34.7 53 0.0011 19.7 2.8 19 118-136 18-36 (53)
301 PRK13842 conjugal transfer pro 34.5 2.4E+02 0.0051 23.2 7.3 38 47-84 51-88 (267)
302 COG3883 Uncharacterized protei 34.5 2.6E+02 0.0056 23.0 9.3 25 72-96 73-97 (265)
303 PF14842 FliG_N: FliG N-termin 34.5 1.5E+02 0.0033 20.4 5.5 55 49-109 31-85 (108)
304 KOG0859 Synaptobrevin/VAMP-lik 34.3 1.7E+02 0.0037 23.3 6.1 11 80-90 141-151 (217)
305 PF10779 XhlA: Haemolysin XhlA 34.2 1.3E+02 0.0027 19.2 8.7 15 50-64 12-26 (71)
306 TIGR01410 tatB twin arginine-t 34.1 1.4E+02 0.0031 19.8 5.8 37 52-89 27-63 (80)
307 PRK02119 hypothetical protein; 34.0 1.4E+02 0.0029 19.5 6.3 33 71-103 15-47 (73)
308 PRK04325 hypothetical protein; 33.9 1.4E+02 0.0029 19.5 6.3 23 71-93 15-37 (74)
309 PF12777 MT: Microtubule-bindi 33.9 2.8E+02 0.006 23.1 9.7 61 48-108 232-292 (344)
310 PF04380 BMFP: Membrane fusoge 33.9 1.4E+02 0.003 19.6 7.7 58 51-108 6-72 (79)
311 PF10661 EssA: WXG100 protein 33.8 55 0.0012 24.2 3.3 12 122-133 130-141 (145)
312 PF11057 Cortexin: Cortexin of 33.8 45 0.00097 22.4 2.5 11 126-136 40-50 (81)
313 PF04156 IncA: IncA protein; 33.4 2E+02 0.0044 21.3 9.6 60 47-106 91-150 (191)
314 KOG2991 Splicing regulator [RN 33.3 2.9E+02 0.0062 23.0 7.8 56 52-107 237-299 (330)
315 smart00283 MA Methyl-accepting 33.3 2.1E+02 0.0045 21.5 9.1 57 49-105 30-86 (262)
316 PRK00846 hypothetical protein; 33.3 1.5E+02 0.0032 19.8 6.3 32 74-105 22-53 (77)
317 PRK10132 hypothetical protein; 33.1 1.7E+02 0.0038 20.5 11.9 29 96-124 72-100 (108)
318 PF11031 Phage_holin_T: Bacter 33.1 61 0.0013 25.7 3.5 22 94-115 8-29 (216)
319 PHA03332 membrane glycoprotein 32.6 2.1E+02 0.0045 28.4 7.4 45 47-91 901-949 (1328)
320 PF13314 DUF4083: Domain of un 32.2 83 0.0018 20.0 3.4 20 115-134 10-29 (58)
321 PF07245 Phlebovirus_G2: Phleb 32.1 50 0.0011 29.4 3.2 18 115-132 471-488 (507)
322 TIGR01432 QOXA cytochrome aa3 32.0 62 0.0014 25.2 3.5 16 121-136 35-50 (217)
323 PF06729 CENP-R: Kinetochore c 31.6 2.2E+02 0.0047 21.2 6.0 19 2-20 7-25 (139)
324 PF14523 Syntaxin_2: Syntaxin- 31.6 1.6E+02 0.0034 19.5 9.0 59 48-107 41-99 (102)
325 PF04100 Vps53_N: Vps53-like, 31.5 1.8E+02 0.0039 24.8 6.4 14 65-78 36-49 (383)
326 PF06936 Selenoprotein_S: Sele 31.4 17 0.00037 28.3 0.2 18 113-130 36-53 (190)
327 PF10389 CoatB: Bacteriophage 31.3 56 0.0012 19.8 2.4 21 117-137 24-44 (46)
328 PF00429 TLV_coat: ENV polypro 31.0 3.7E+02 0.0081 24.2 8.6 48 60-107 423-470 (561)
329 TIGR02120 GspF general secreti 30.7 1.5E+02 0.0032 24.8 5.7 59 50-108 81-154 (399)
330 PF06120 Phage_HK97_TLTM: Tail 30.2 3.3E+02 0.007 22.8 9.1 48 50-97 54-106 (301)
331 PF02050 FliJ: Flagellar FliJ 30.2 1.6E+02 0.0035 19.2 9.0 47 61-107 48-94 (123)
332 PF14227 UBN2_2: gag-polypepti 29.9 76 0.0016 21.6 3.3 48 49-97 41-88 (119)
333 PF00517 GP41: Retroviral enve 29.8 1E+02 0.0022 24.0 4.3 19 48-66 105-123 (204)
334 PF01102 Glycophorin_A: Glycop 29.8 61 0.0013 23.5 2.8 15 122-136 75-89 (122)
335 PF05377 FlaC_arch: Flagella a 29.7 1.5E+02 0.0032 18.6 6.7 27 49-75 5-31 (55)
336 PF06661 VirE3: VirE3; InterP 29.7 46 0.001 27.7 2.4 44 65-108 222-265 (317)
337 PLN00174 predicted protein; Pr 29.6 77 0.0017 24.1 3.4 22 111-132 115-137 (160)
338 PF06363 Picorna_P3A: Picornav 29.6 2E+02 0.0043 20.1 6.3 22 88-109 47-68 (100)
339 PRK10807 paraquat-inducible pr 29.6 4.2E+02 0.009 23.8 11.0 7 36-42 416-422 (547)
340 COG1766 fliF Flagellar basal b 29.6 57 0.0012 29.4 3.2 28 106-133 436-463 (545)
341 PF04102 SlyX: SlyX; InterPro 29.5 1.5E+02 0.0034 18.8 6.4 33 74-106 13-45 (69)
342 PF03670 UPF0184: Uncharacteri 29.5 1.9E+02 0.004 19.7 5.9 22 49-70 31-52 (83)
343 PF11657 Activator-TraM: Trans 29.4 2.4E+02 0.0052 21.0 9.7 17 92-108 101-117 (144)
344 PF04129 Vps52: Vps52 / Sac2 f 29.2 4E+02 0.0087 23.5 8.9 54 48-101 11-64 (508)
345 TIGR03141 cytochro_ccmD heme e 29.2 1E+02 0.0022 18.1 3.3 20 114-133 10-29 (45)
346 PHA02689 ORF051 putative membr 28.8 81 0.0018 23.1 3.3 21 113-133 30-50 (128)
347 PF11190 DUF2976: Protein of u 28.7 75 0.0016 21.7 3.0 18 116-133 66-83 (87)
348 PF15012 DUF4519: Domain of un 28.6 18 0.00039 22.8 -0.1 11 121-131 40-50 (56)
349 PF04156 IncA: IncA protein; 28.6 2.5E+02 0.0053 20.8 9.3 60 48-107 85-144 (191)
350 PF05008 V-SNARE: Vesicle tran 28.6 1.6E+02 0.0035 18.7 4.5 25 68-92 28-52 (79)
351 PRK15041 methyl-accepting chem 28.6 4.1E+02 0.0088 23.4 10.0 54 52-105 273-326 (554)
352 PF13608 Potyvirid-P3: Protein 28.5 20 0.00044 31.3 0.1 39 51-91 363-401 (445)
353 PRK11486 flagellar biosynthesi 28.5 78 0.0017 23.0 3.2 14 121-134 28-41 (124)
354 PF14960 ATP_synth_reg: ATP sy 28.5 1.4E+02 0.003 18.3 3.8 35 100-136 11-47 (49)
355 KOG0804 Cytoplasmic Zn-finger 28.5 4.3E+02 0.0093 23.6 8.9 57 51-107 339-396 (493)
356 TIGR02115 potass_kdpF K+-trans 28.4 82 0.0018 16.8 2.5 17 120-136 4-20 (26)
357 PRK14740 kdbF potassium-transp 28.4 1.1E+02 0.0024 16.7 3.5 17 120-136 9-25 (29)
358 PF08518 GIT_SHD: Spa2 homolog 28.3 78 0.0017 17.5 2.5 16 61-76 11-26 (31)
359 PF06785 UPF0242: Uncharacteri 28.1 3.9E+02 0.0085 23.0 7.9 57 51-107 166-222 (401)
360 PF06916 DUF1279: Protein of u 27.9 1.1E+02 0.0024 20.5 3.7 34 100-133 1-34 (91)
361 TIGR03368 cellulose_yhjU cellu 27.9 3.2E+02 0.0069 24.7 7.4 51 58-108 40-91 (518)
362 COG4499 Predicted membrane pro 27.6 1.3E+02 0.0029 26.2 4.9 30 79-108 185-215 (434)
363 PRK13275 mtrF tetrahydromethan 27.5 1.8E+02 0.0039 18.9 6.1 44 80-124 12-55 (67)
364 PF12455 Dynactin: Dynein asso 27.5 1.3E+02 0.0028 24.4 4.6 48 50-97 222-269 (274)
365 KOG0809 SNARE protein TLG2/Syn 27.2 3.8E+02 0.0082 22.5 7.6 88 47-134 207-299 (305)
366 PF05911 DUF869: Plant protein 27.1 5.4E+02 0.012 24.4 9.1 70 37-107 618-687 (769)
367 PF15339 Afaf: Acrosome format 26.8 1.5E+02 0.0033 23.1 4.6 30 101-134 129-158 (200)
368 smart00787 Spc7 Spc7 kinetocho 26.8 3.7E+02 0.0081 22.3 9.0 55 52-106 205-259 (312)
369 COG2900 SlyX Uncharacterized p 26.6 2E+02 0.0043 19.1 6.3 29 74-102 17-45 (72)
370 PF04088 Peroxin-13_N: Peroxin 26.6 73 0.0016 24.1 2.9 24 113-136 135-158 (158)
371 PHA03386 P10 fibrous body prot 26.6 1.2E+02 0.0027 21.0 3.7 29 36-65 22-50 (94)
372 PF09604 Potass_KdpF: F subuni 26.4 98 0.0021 16.3 2.5 19 118-136 3-21 (25)
373 PF11658 DUF3260: Protein of u 26.3 3.7E+02 0.008 24.3 7.5 51 58-108 39-90 (518)
374 PF00804 Syntaxin: Syntaxin; 26.2 1.9E+02 0.004 18.6 7.4 59 47-105 10-71 (103)
375 PF02167 Cytochrom_C1: Cytochr 26.2 82 0.0018 25.0 3.2 19 116-134 196-214 (219)
376 PHA02967 hypothetical protein; 26.2 97 0.0021 22.7 3.3 21 113-133 27-47 (128)
377 PF10864 DUF2663: Protein of u 26.0 1.7E+02 0.0038 21.5 4.7 7 126-132 34-40 (130)
378 PF07432 Hc1: Histone H1-like 26.0 2.6E+02 0.0057 20.3 6.0 46 56-108 2-47 (123)
379 PF11346 DUF3149: Protein of u 25.9 1.4E+02 0.003 17.7 3.4 12 123-134 26-37 (42)
380 PRK13729 conjugal transfer pil 25.9 2.7E+02 0.0059 24.8 6.6 43 47-89 79-121 (475)
381 PHA02909 hypothetical protein; 25.9 91 0.002 19.9 2.8 12 112-123 30-41 (72)
382 PF15222 KAR: Kidney androgen- 25.8 96 0.0021 21.4 3.1 21 69-91 8-28 (103)
383 PF02520 DUF148: Domain of unk 25.8 2.2E+02 0.0049 19.4 7.3 58 47-108 19-76 (113)
384 PHA02662 ORF131 putative membr 25.7 67 0.0015 25.8 2.6 17 47-63 74-90 (226)
385 KOG2729 ER vesicle integral me 25.7 95 0.0021 23.1 3.2 22 111-132 110-131 (137)
386 COG3883 Uncharacterized protei 25.7 3.8E+02 0.0082 22.0 9.9 44 59-102 53-96 (265)
387 PF04246 RseC_MucC: Positive r 25.6 89 0.0019 22.2 3.1 22 115-136 97-118 (135)
388 PHA00547 hypothetical protein 25.6 67 0.0015 26.9 2.7 20 117-136 38-57 (337)
389 PF07851 TMPIT: TMPIT-like pro 25.4 4.2E+02 0.0091 22.4 7.6 61 37-97 22-86 (330)
390 KOG2675 Adenylate cyclase-asso 25.4 1.1E+02 0.0024 27.0 4.1 15 58-72 276-290 (480)
391 TIGR00206 fliF flagellar basal 25.3 2.1E+02 0.0045 25.8 5.9 15 94-108 4-18 (555)
392 PRK10404 hypothetical protein; 25.3 2.4E+02 0.0051 19.6 11.1 84 43-126 8-96 (101)
393 COG3071 HemY Uncharacterized e 25.3 86 0.0019 27.2 3.4 24 113-136 44-67 (400)
394 PRK06231 F0F1 ATP synthase sub 25.2 92 0.002 24.1 3.3 20 115-134 49-68 (205)
395 PF10854 DUF2649: Protein of u 25.0 1.3E+02 0.0028 19.4 3.4 17 116-132 40-56 (67)
396 PF13677 MotB_plug: Membrane M 24.8 85 0.0018 19.4 2.5 14 118-131 25-38 (58)
397 KOG1690 emp24/gp25L/p24 family 24.8 3.6E+02 0.0078 21.5 8.3 27 47-73 135-161 (215)
398 PF08060 NOSIC: NOSIC (NUC001) 24.7 1.5E+02 0.0032 17.9 3.6 24 75-98 3-26 (53)
399 COG5487 Small integral membran 24.7 1.5E+02 0.0033 18.4 3.5 21 115-135 31-51 (54)
400 COG1963 Uncharacterized protei 24.7 3E+02 0.0064 20.8 5.7 37 69-107 91-127 (153)
401 PRK06007 fliF flagellar MS-rin 24.6 2.1E+02 0.0046 25.6 5.9 15 94-108 4-18 (542)
402 PRK10573 type IV pilin biogene 24.5 3.5E+02 0.0077 22.5 7.0 15 93-107 137-151 (399)
403 TIGR03063 srtB_target sortase 24.5 1E+02 0.0022 16.9 2.4 11 113-123 10-20 (29)
404 KOG3208 SNARE protein GS28 [In 24.3 3.8E+02 0.0083 21.6 7.8 50 86-135 170-230 (231)
405 COG4331 Predicted membrane pro 23.9 3.3E+02 0.0071 20.7 6.1 59 77-135 53-128 (167)
406 PF05103 DivIVA: DivIVA protei 23.9 86 0.0019 21.7 2.7 49 47-95 21-69 (131)
407 PF02932 Neur_chan_memb: Neuro 23.7 1.5E+02 0.0032 20.7 4.0 10 121-130 228-237 (237)
408 PF10504 DUF2452: Protein of u 23.4 3E+02 0.0065 20.9 5.6 43 37-79 38-80 (159)
409 COG1622 CyoA Heme/copper-type 23.4 1E+02 0.0022 24.9 3.3 15 122-136 47-61 (247)
410 PF07730 HisKA_3: Histidine ki 23.3 1.8E+02 0.0039 17.5 6.9 51 54-107 11-61 (68)
411 COG1585 Membrane protein impli 23.2 1.1E+02 0.0025 22.4 3.3 25 112-136 46-70 (140)
412 PF07850 Renin_r: Renin recept 23.2 27 0.00059 24.4 0.0 19 114-132 59-77 (98)
413 PRK14858 tatA twin arginine tr 23.1 2.8E+02 0.0061 19.7 6.8 41 52-93 28-68 (108)
414 PF05055 DUF677: Protein of un 23.1 4.4E+02 0.0096 22.2 7.2 19 77-95 155-173 (336)
415 PF11120 DUF2636: Protein of u 23.0 1E+02 0.0022 19.8 2.6 21 115-135 7-28 (62)
416 COG1340 Uncharacterized archae 23.0 4.5E+02 0.0097 21.9 8.7 25 80-104 222-246 (294)
417 COG1196 Smc Chromosome segrega 23.0 7.2E+02 0.016 24.3 10.1 59 49-107 374-432 (1163)
418 KOG2199 Signal transducing ada 22.8 4E+02 0.0086 23.5 6.9 56 47-109 313-368 (462)
419 PF12277 DUF3618: Protein of u 22.8 1.8E+02 0.0039 17.3 4.1 41 35-76 5-45 (49)
420 smart00502 BBC B-Box C-termina 22.8 2.4E+02 0.0052 18.7 11.0 62 47-108 42-104 (127)
421 PRK13108 prolipoprotein diacyl 22.8 89 0.0019 27.5 3.1 26 111-136 21-46 (460)
422 KOG4674 Uncharacterized conser 22.5 5.2E+02 0.011 27.1 8.5 71 37-107 802-872 (1822)
423 PRK00442 tatA twin arginine tr 22.5 72 0.0016 22.1 2.0 10 117-126 11-20 (92)
424 PF14963 CAML: Calcium signal- 22.4 2.6E+02 0.0056 22.9 5.4 27 93-123 229-255 (263)
425 smart00283 MA Methyl-accepting 22.4 3.4E+02 0.0073 20.3 9.6 48 49-96 37-84 (262)
426 PF05266 DUF724: Protein of un 22.3 3.7E+02 0.008 20.7 9.1 58 48-105 128-185 (190)
427 COG4942 Membrane-bound metallo 22.2 5.4E+02 0.012 22.6 9.4 61 47-107 55-122 (420)
428 COG3898 Uncharacterized membra 22.1 1E+02 0.0022 27.4 3.2 18 117-134 47-64 (531)
429 KOG0501 K+-channel KCNQ [Inorg 22.1 2.1E+02 0.0046 26.8 5.3 38 94-135 334-371 (971)
430 PF07544 Med9: RNA polymerase 22.1 2.4E+02 0.0053 18.6 6.6 54 47-100 24-80 (83)
431 COG4640 Predicted membrane pro 22.1 87 0.0019 27.5 2.8 22 114-135 54-75 (465)
432 PF11027 DUF2615: Protein of u 22.0 1.2E+02 0.0025 21.4 3.0 12 97-108 16-27 (103)
433 PF07225 NDUF_B4: NADH-ubiquin 21.9 92 0.002 22.7 2.5 25 112-136 81-105 (125)
434 KOG4368 Predicted RNA binding 21.8 6.6E+02 0.014 23.4 9.0 49 47-100 66-115 (757)
435 PHA03099 epidermal growth fact 21.8 81 0.0018 23.4 2.2 20 117-136 108-127 (139)
436 PF10805 DUF2730: Protein of u 21.8 2.8E+02 0.0061 19.1 8.3 57 50-106 34-92 (106)
437 PF03302 VSP: Giardia variant- 21.8 48 0.001 28.4 1.2 8 125-132 385-392 (397)
438 PRK05529 cell division protein 21.7 1E+02 0.0022 24.7 3.0 16 102-117 24-39 (255)
439 PHA03072 putative viral membra 21.7 1.7E+02 0.0037 22.8 4.0 34 96-129 14-47 (190)
440 PF08649 DASH_Dad1: DASH compl 21.7 2.2E+02 0.0049 18.0 4.7 30 78-107 8-37 (58)
441 KOG3564 GTPase-activating prot 21.5 5.7E+02 0.012 23.3 7.7 75 34-108 11-85 (604)
442 PRK13414 flagellar biosynthesi 21.4 1.4E+02 0.0029 23.3 3.5 20 115-134 66-85 (209)
443 COG3850 NarQ Signal transducti 21.4 5E+02 0.011 23.7 7.4 18 117-134 157-174 (574)
444 PF15206 FAM209: FAM209 family 21.4 37 0.0008 25.4 0.4 12 125-136 47-58 (150)
445 COG2966 Uncharacterized conser 21.4 3.8E+02 0.0081 21.6 6.2 27 82-108 93-119 (250)
446 PF10669 Phage_Gp23: Protein g 21.3 3.1E+02 0.0067 19.4 7.1 42 48-96 65-106 (121)
447 PF04799 Fzo_mitofusin: fzo-li 21.3 3.9E+02 0.0084 20.5 8.1 33 48-83 106-138 (171)
448 PHA02675 ORF104 fusion protein 21.3 2.8E+02 0.0061 19.0 7.2 46 57-102 36-81 (90)
449 COG0841 AcrB Cation/multidrug 21.2 78 0.0017 30.6 2.6 20 117-136 335-354 (1009)
450 PF02532 PsbI: Photosystem II 21.2 1.8E+02 0.0039 16.7 3.6 12 120-131 9-20 (36)
451 PRK11644 sensory histidine kin 21.1 5.5E+02 0.012 22.3 9.1 12 65-76 304-315 (495)
452 PRK08032 fliD flagellar cappin 21.1 3.6E+02 0.0078 23.5 6.5 43 66-108 407-449 (462)
453 PRK04654 sec-independent trans 21.0 4.3E+02 0.0094 21.0 6.7 28 79-106 68-95 (214)
454 PRK10803 tol-pal system protei 21.0 4.4E+02 0.0095 21.1 8.5 26 50-75 60-85 (263)
455 KOG0994 Extracellular matrix g 21.0 3.7E+02 0.008 27.3 6.8 60 48-107 1236-1295(1758)
456 PF11657 Activator-TraM: Trans 21.0 3.6E+02 0.0077 20.1 12.2 10 54-63 53-62 (144)
457 PF10661 EssA: WXG100 protein 21.0 3.5E+02 0.0076 19.9 6.5 25 112-136 116-141 (145)
458 PF08181 DegQ: DegQ (SacQ) fam 21.0 2E+02 0.0043 17.1 5.2 26 63-88 9-34 (46)
459 PRK09731 putative general secr 21.0 1.2E+02 0.0026 23.3 3.2 18 115-132 39-56 (178)
460 PRK10869 recombination and rep 21.0 4.8E+02 0.01 23.3 7.4 59 49-107 294-362 (553)
461 PRK05431 seryl-tRNA synthetase 20.9 5.2E+02 0.011 22.2 7.4 17 49-65 33-49 (425)
462 PF05827 ATP-synt_S1: Vacuolar 20.9 1.3E+02 0.0028 24.0 3.5 22 113-134 258-279 (282)
463 PF13850 ERGIC_N: Endoplasmic 20.8 1.6E+02 0.0035 19.9 3.5 25 110-134 20-44 (96)
464 PF01708 Gemini_mov: Geminivir 20.7 1E+02 0.0022 21.4 2.4 17 116-132 42-58 (91)
465 PRK07521 flgK flagellar hook-a 20.7 3.3E+02 0.0071 23.8 6.2 54 36-89 143-206 (483)
466 PF10857 DUF2701: Protein of u 20.7 73 0.0016 20.6 1.6 19 117-135 4-22 (63)
467 PF13618 Gluconate_2-dh3: Gluc 20.6 2.8E+02 0.0061 19.1 4.9 60 25-87 17-86 (131)
468 PTZ00446 vacuolar sorting prot 20.6 2.8E+02 0.0061 21.6 5.1 43 49-93 106-148 (191)
469 PHA00646 hypothetical protein 20.5 1.5E+02 0.0033 19.1 3.0 19 116-134 38-56 (65)
470 KOG3970 Predicted E3 ubiquitin 20.5 1.4E+02 0.003 24.4 3.5 26 112-137 251-276 (299)
471 TIGR02833 spore_III_AB stage I 20.4 3.7E+02 0.0081 20.1 7.3 66 57-127 104-170 (170)
472 TIGR01760 tape_meas_TP901 phag 20.4 4.6E+02 0.01 21.1 10.4 76 45-128 273-348 (350)
473 PRK03100 sec-independent trans 20.3 3.6E+02 0.0079 19.9 6.7 43 51-93 28-71 (136)
474 PF00429 TLV_coat: ENV polypro 20.2 3.4E+02 0.0073 24.5 6.2 96 37-132 428-548 (561)
475 PF11221 Med21: Subunit 21 of 20.2 3.4E+02 0.0073 19.7 5.3 34 75-108 100-133 (144)
476 PF14899 DUF4492: Domain of un 20.1 1.3E+02 0.0028 19.5 2.7 24 111-134 18-41 (64)
477 PRK14759 potassium-transportin 20.1 1.7E+02 0.0037 16.0 3.5 24 113-136 2-25 (29)
478 PF04253 TFR_dimer: Transferri 20.1 2.9E+02 0.0062 19.1 4.8 50 53-107 4-53 (125)
479 PF01307 Plant_vir_prot: Plant 20.1 1.3E+02 0.0028 21.1 2.9 28 110-137 68-95 (104)
480 PRK11281 hypothetical protein; 20.1 4.7E+02 0.01 25.9 7.5 73 31-105 34-106 (1113)
481 PF05399 EVI2A: Ectropic viral 20.1 1.2E+02 0.0026 24.3 3.0 21 112-132 133-153 (227)
482 PRK08307 stage III sporulation 20.1 3.6E+02 0.0077 20.2 5.6 49 74-127 123-171 (171)
483 PF11189 DUF2973: Protein of u 20.0 1.6E+02 0.0035 18.9 3.1 21 113-133 3-23 (65)
No 1
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.3e-25 Score=158.63 Aligned_cols=92 Identities=22% Similarity=0.441 Sum_probs=86.8
Q ss_pred hcchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCchhHHHHHHH
Q 032617 42 IDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLFA 121 (137)
Q Consensus 42 ~~~~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~~~~~~~lil~~ 121 (137)
.+..|+|||+.++.|.++|..||.++.+|++||+.||++||.|+++||++...|.+||.|++.+.++++.+.+||+++|+
T Consensus 27 ~~~le~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~sg~~l~~~m~~f~ 106 (118)
T KOG3385|consen 27 LASLERENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARRSGISLLCWMAVFS 106 (118)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 34456899999999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred HHHHHHHHHHHH
Q 032617 122 LFLFFILYMWSK 133 (137)
Q Consensus 122 v~vffvly~l~k 133 (137)
+++||++||+++
T Consensus 107 lV~~fi~~~~lt 118 (118)
T KOG3385|consen 107 LVAFFILWVWLT 118 (118)
T ss_pred HHHHHHhheeeC
Confidence 999999998864
No 2
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=4.9e-18 Score=134.93 Aligned_cols=96 Identities=20% Similarity=0.317 Sum_probs=79.3
Q ss_pred hhhHhhhcchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCch-h
Q 032617 36 DEIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNH-I 114 (137)
Q Consensus 36 ~~~q~~~~~~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~~~~-~ 114 (137)
..++..++.|.+|||+.||.|+++|+++|++|..||+|+++|+.+||++++.||.+.++|.++++++.+|.+.+..|. |
T Consensus 137 ~~~~~~qqqm~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~~~s~~~~~ 216 (235)
T KOG3202|consen 137 QEIVQLQQQMLQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNRMASQCSQW 216 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch
Confidence 455555566679999999999999999999999999999999999999999999999999999999999999766666 5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032617 115 MHVVLFALFLFFILYMW 131 (137)
Q Consensus 115 ~~lil~~v~vffvly~l 131 (137)
|.++++++++++++.+|
T Consensus 217 ~~il~l~~~~~lvv~i~ 233 (235)
T KOG3202|consen 217 CAILLLVGLLLLVVIIF 233 (235)
T ss_pred hHHHHHHHHHHHHHHHh
Confidence 54444444444444443
No 3
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=99.48 E-value=5.3e-13 Score=85.15 Aligned_cols=61 Identities=23% Similarity=0.445 Sum_probs=59.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617 48 DLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK 108 (137)
Q Consensus 48 eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~ 108 (137)
|+|+.|+.|+++|..||+++.+|++||++|+.+||++++.|+.+...|++++++|.++.+.
T Consensus 1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~ 61 (63)
T PF05739_consen 1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKY 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999999999999999999999999999999999999999999999999999885
No 4
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=99.32 E-value=5.7e-11 Score=94.92 Aligned_cols=90 Identities=14% Similarity=0.241 Sum_probs=83.4
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCchhHHHHHHHHHHH
Q 032617 46 NADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLFALFLF 125 (137)
Q Consensus 46 ~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~~~~~~~lil~~v~vf 125 (137)
+..||+-.++|.+-.++||+-+..+++-+++.+++||..+..+|+....|+.+.+|++...+++.+|+.|.+|++++++|
T Consensus 162 ~~~QE~L~~em~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~~~~~~~i~~v~~~F 241 (251)
T PF09753_consen 162 RNLQEDLTEEMLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWGCWTWLMIFVVIIVF 241 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999998776677777788888889
Q ss_pred HHHHHHHHHh
Q 032617 126 FILYMWSKMF 135 (137)
Q Consensus 126 fvly~l~k~~ 135 (137)
+++++++|+|
T Consensus 242 i~mvl~iri~ 251 (251)
T PF09753_consen 242 IMMVLFIRIF 251 (251)
T ss_pred HHHHHHheeC
Confidence 9999999875
No 5
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=99.21 E-value=9.6e-11 Score=73.02 Aligned_cols=58 Identities=24% Similarity=0.435 Sum_probs=56.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 032617 47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNK 104 (137)
Q Consensus 47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~ 104 (137)
.++|+.++.|+..|..|++++.+|+.||.+|+++||.++++++.+...++.+.+++.+
T Consensus 2 ~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~k 59 (60)
T cd00193 2 QERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKK 59 (60)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5889999999999999999999999999999999999999999999999999999976
No 6
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=99.13 E-value=4.6e-10 Score=70.97 Aligned_cols=61 Identities=21% Similarity=0.381 Sum_probs=58.1
Q ss_pred chhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 032617 44 PVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNK 104 (137)
Q Consensus 44 ~~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~ 104 (137)
.+..++|+.++.|+..|..+++++.+|+.||.+|+.+||.+++.++.+...++++.+++.+
T Consensus 5 ~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~ 65 (66)
T smart00397 5 QMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKK 65 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 3458999999999999999999999999999999999999999999999999999999876
No 7
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=4e-09 Score=85.77 Aligned_cols=64 Identities=20% Similarity=0.347 Sum_probs=60.5
Q ss_pred cchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 032617 43 DPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSI 106 (137)
Q Consensus 43 ~~~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~ 106 (137)
+..++|.|+-|+.|++.+.+||++|.++|.||+.||+.||.|++..|+....+..+.+|+++++
T Consensus 210 ~~~edeiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~kLl 273 (273)
T KOG3065|consen 210 PAAEDEIDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKKLL 273 (273)
T ss_pred ChhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHhcC
Confidence 4556789999999999999999999999999999999999999999999999999999999874
No 8
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=4.6e-06 Score=68.24 Aligned_cols=82 Identities=17% Similarity=0.308 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCc-hhHHHHHHHHHHHHHHH
Q 032617 51 DEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSN-HIMHVVLFALFLFFILY 129 (137)
Q Consensus 51 ~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~~~-~~~~lil~~v~vffvly 129 (137)
..+..++++|.-|.+|-..+-.=|.+|.++.-.+++.||.+...+..+.+-|-+.+.+-+++ |.+.=|++++++||++|
T Consensus 227 ~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSNRwLmvkiF~i~ivFflvf 306 (311)
T KOG0812|consen 227 KTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSNRWLMVKIFGILIVFFLVF 306 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 34566888888899999999999999999999999999999999999999999999975444 44444777777888888
Q ss_pred HHH
Q 032617 130 MWS 132 (137)
Q Consensus 130 ~l~ 132 (137)
|++
T Consensus 307 vlf 309 (311)
T KOG0812|consen 307 VLF 309 (311)
T ss_pred HHh
Confidence 775
No 9
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=98.29 E-value=1.5e-05 Score=63.14 Aligned_cols=88 Identities=13% Similarity=0.190 Sum_probs=77.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcC-CchhHHHHHHHHHHHHH
Q 032617 49 LDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHG-SNHIMHVVLFALFLFFI 127 (137)
Q Consensus 49 qD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~-~~~~~~lil~~v~vffv 127 (137)
|.+-.+.|..-++.||..+..-++-+++.|..|..+....|.....|..+..|+.+-.++.. .|..|.+|+|+|+.|++
T Consensus 153 QeeLaesll~LArslKtnalAfqsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~s~wf~~~miI~v~~sFVs 232 (244)
T KOG2678|consen 153 QEELAESLLKLARSLKTNALAFQSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKLSYWFYITMIIFVILSFVS 232 (244)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 56677788888899999999999999999999999999999999999999999999999763 45566677788888899
Q ss_pred HHHHHHHhc
Q 032617 128 LYMWSKMFR 136 (137)
Q Consensus 128 ly~l~k~~~ 136 (137)
+.+++++|+
T Consensus 233 Miliiqifk 241 (244)
T KOG2678|consen 233 MILIIQIFK 241 (244)
T ss_pred HHHHHHHhh
Confidence 999999886
No 10
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=1e-05 Score=66.76 Aligned_cols=56 Identities=18% Similarity=0.308 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617 52 EITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 52 ~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
.+-.|..++.-|+++-.+|.-.|+.|.+++|+++.++.++..-+..+...+++..+
T Consensus 207 ~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~ 262 (297)
T KOG0810|consen 207 EIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVK 262 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678999999999999999999999999999999999999999999999987665
No 11
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=98.04 E-value=0.00024 Score=48.74 Aligned_cols=82 Identities=15% Similarity=0.158 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHH
Q 032617 52 EITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLFALFLFFILYMW 131 (137)
Q Consensus 52 ~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~~~~~~~lil~~v~vffvly~l 131 (137)
.|......++.--..+..--+++.+|++-|.++++.++.....|+.+.+-++++-++...-.+++.+.|++++..++|++
T Consensus 9 ~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~~~v~yI~ 88 (92)
T PF03908_consen 9 SLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFLLVVLYIL 88 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444566667889999999999999999999999999999999999764444444455556666666666
Q ss_pred HH
Q 032617 132 SK 133 (137)
Q Consensus 132 ~k 133 (137)
+|
T Consensus 89 ~r 90 (92)
T PF03908_consen 89 WR 90 (92)
T ss_pred hh
Confidence 54
No 12
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=98.03 E-value=7.4e-05 Score=59.88 Aligned_cols=83 Identities=13% Similarity=0.208 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhc----CCchhHHHHHHHHHHH
Q 032617 50 DDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKH----GSNHIMHVVLFALFLF 125 (137)
Q Consensus 50 D~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~----~~~~~~~lil~~v~vf 125 (137)
-+.+-.|..++.-|-++-.+|..+|.+|.++.|-+++++..+...+......+.+.+++. ..++.||.|+|++++|
T Consensus 184 h~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaaRkkki~c~gI~~iii~v 263 (280)
T COG5074 184 HQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAARKKKIRCYGICFIIIIV 263 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHHHhcceehhhhHHHHHHH
Confidence 345778889999999999999999999999999999999999999999999998888853 3578899888887775
Q ss_pred HHHHHHHH
Q 032617 126 FILYMWSK 133 (137)
Q Consensus 126 fvly~l~k 133 (137)
+| |++.|
T Consensus 264 iv-~vv~~ 270 (280)
T COG5074 264 IV-VVVFK 270 (280)
T ss_pred HH-HHHhc
Confidence 54 44433
No 13
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=97.90 E-value=0.00017 Score=58.80 Aligned_cols=77 Identities=16% Similarity=0.325 Sum_probs=64.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhc---CCchhHHHHHHHHH
Q 032617 47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKH---GSNHIMHVVLFALF 123 (137)
Q Consensus 47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~---~~~~~~~lil~~v~ 123 (137)
.|-|+.+..|+.+|.-|-.|-.+++.=|.+|..+.|.++-.++.+..-++++.+-|.+...-. +.|..|.+++++++
T Consensus 191 ~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~~~~~Llil~vv 270 (283)
T COG5325 191 TERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKCRFYLLLILLVV 270 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccchhhHHHHHHHH
Confidence 456899999999999999999999999999999999999999999999999999999988732 23444444433333
No 14
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.85 E-value=0.00012 Score=60.23 Aligned_cols=87 Identities=15% Similarity=0.266 Sum_probs=72.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh--cCCchhHHHHHHHHHH
Q 032617 47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK--HGSNHIMHVVLFALFL 124 (137)
Q Consensus 47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~--~~~~~~~~lil~~v~v 124 (137)
.|-|+++-.+..+|.-|-+|-.+++.=|-+|..++|.++-.++++...++.+.+.+.|.-.. .+.+..|+++++++++
T Consensus 214 ~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~~k~~~i~~L~l~ii 293 (305)
T KOG0809|consen 214 REREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRNKKMKVILMLTLLII 293 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhcCCceEehHHHHHHHH
Confidence 45577889999999999999999999999999999999999999999999999999998774 3345566666666666
Q ss_pred HHHHHHHHH
Q 032617 125 FFILYMWSK 133 (137)
Q Consensus 125 ffvly~l~k 133 (137)
|+++.+++|
T Consensus 294 ~llvllilk 302 (305)
T KOG0809|consen 294 ALLVLLILK 302 (305)
T ss_pred HHHHHHHhh
Confidence 666555554
No 15
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=97.78 E-value=0.00057 Score=46.26 Aligned_cols=60 Identities=17% Similarity=0.272 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH--HHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617 49 LDDEITGLRSQVKQLRN-VAQEIHSEASFQKD--FLDQLQMTLIKAQAGVKNNMRRLNKSIVK 108 (137)
Q Consensus 49 qD~~Ld~L~~~V~~LK~-va~~I~~Ev~~Qn~--lLD~l~~~~d~~~~~L~~t~~rl~~v~~~ 108 (137)
|++.+..+.+.|...++ +..+|..-++...+ .|++-.+.+.......++..+++++-..-
T Consensus 1 ~~dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~ 63 (89)
T PF00957_consen 1 QNDKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWW 63 (89)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 35667777888888877 55566554443332 45555567777788888888888777663
No 16
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.0006 Score=55.60 Aligned_cols=77 Identities=13% Similarity=0.209 Sum_probs=63.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhc--CCchhHHHHHHHHH
Q 032617 47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKH--GSNHIMHVVLFALF 123 (137)
Q Consensus 47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~--~~~~~~~lil~~v~ 123 (137)
+|-++.+..|...|.-+..|-.+++.=|.+|..+.|++++.++.+..-+.+++..|.+..+-. ..+..|++++|+++
T Consensus 176 eeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~~~ll~v~~~ 254 (269)
T KOG0811|consen 176 EEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKKCILLLVGGP 254 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHH
Confidence 456778888999999999999999999999999999999999999999999999999999842 23344555444433
No 17
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.08 E-value=0.021 Score=45.12 Aligned_cols=84 Identities=10% Similarity=0.091 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHH
Q 032617 52 EITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLFALFLFFILYMW 131 (137)
Q Consensus 52 ~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~~~~~~~lil~~v~vffvly~l 131 (137)
.+..=+..|.-+=..+.+|=+-+.+|+..|-....-|-...+.|.=+..-|.-+-++.. .=+++.++.++++++++|++
T Consensus 130 ~l~~s~~~lDd~l~~G~~ile~l~~Q~~~L~~~~~ki~~~~ntLGlSn~ti~lIeRR~~-~Dk~iF~~G~i~~~v~~yl~ 208 (213)
T KOG3251|consen 130 SLKRSHNMLDDLLESGSAILENLVEQRLTLKGTQKKILDILNTLGLSNQTIRLIERRVR-EDKIIFYGGVILTLVIMYLF 208 (213)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHH
Confidence 34444444444455688899999999999999999999888888655554444444321 12233344445555666777
Q ss_pred HHHhc
Q 032617 132 SKMFR 136 (137)
Q Consensus 132 ~k~~~ 136 (137)
++|+|
T Consensus 209 ~~wlr 213 (213)
T KOG3251|consen 209 YRWLR 213 (213)
T ss_pred HHHhC
Confidence 77765
No 18
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=96.63 E-value=0.063 Score=42.86 Aligned_cols=97 Identities=11% Similarity=0.198 Sum_probs=70.1
Q ss_pred hhHhhhcchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh----cCCc
Q 032617 37 EIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK----HGSN 112 (137)
Q Consensus 37 ~~q~~~~~~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~----~~~~ 112 (137)
..+...+.....++..-+.|.+-+. .+|..+.+-...=+..|.+=..-++++...+.++...+++..++ .+.+
T Consensus 149 ~~~~~~e~~l~~~~~~QE~L~~em~---~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~ 225 (251)
T PF09753_consen 149 TSQASLEKILQHHRNLQEDLTEEML---SLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKS 225 (251)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444444566666777776654 45778888887778888888999999999999999999888775 3456
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhc
Q 032617 113 HIMHVVLFALFLFFILYMWSKMFR 136 (137)
Q Consensus 113 ~~~~lil~~v~vffvly~l~k~~~ 136 (137)
+.|++.++++++++++.+++-|.|
T Consensus 226 ~~~~~~~~i~~v~~~Fi~mvl~ir 249 (251)
T PF09753_consen 226 WGCWTWLMIFVVIIVFIMMVLFIR 249 (251)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhe
Confidence 778888877777776666665443
No 19
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.57 E-value=0.05 Score=43.09 Aligned_cols=70 Identities=17% Similarity=0.269 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcC-CchhHHHHHHHHHHHHHHHHHHHH
Q 032617 65 NVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHG-SNHIMHVVLFALFLFFILYMWSKM 134 (137)
Q Consensus 65 ~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~-~~~~~~lil~~v~vffvly~l~k~ 134 (137)
+|+..|=+++..|-+-|..-..-.-.++..|+++.+=++.|.++.- .++.|+.|++++++++++.+..||
T Consensus 149 qIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~nk~~~~aii~~l~~~il~ilY~kf 219 (220)
T KOG1666|consen 149 QIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLIRNKFTLTAIIALLVLAILLILYSKF 219 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566677777888888888778888888888888888888887643 456666666555554444444443
No 20
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.23 E-value=0.16 Score=36.63 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617 81 LDQLQMTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 81 LD~l~~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
|++=.+.+..+.+.-+++..++++-+.
T Consensus 62 L~drad~L~~~as~F~~~A~klkrk~w 88 (116)
T KOG0860|consen 62 LDDRADQLQAGASQFEKTAVKLKRKMW 88 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555566666677777765544
No 21
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.09 E-value=0.12 Score=43.05 Aligned_cols=73 Identities=11% Similarity=0.242 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHH
Q 032617 58 SQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLFALFLFFILYM 130 (137)
Q Consensus 58 ~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~~~~~~~lil~~v~vffvly~ 130 (137)
.+|--+-.+-..+-+-|-.|..-+|-|-+..+.+...++....-+.+..+.+++..-|++++++|+-|+++++
T Consensus 239 ~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~~r~~~lf~llvlsf~lLFl 311 (316)
T KOG3894|consen 239 KRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGGLRVFLLFFLLVLSFSLLFL 311 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH
Confidence 3333333344556677888889999999999999999999999999999987766666666666665555444
No 22
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=95.92 E-value=0.36 Score=36.67 Aligned_cols=85 Identities=11% Similarity=0.155 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHH
Q 032617 50 DDEITGLRSQVKQLRN-VAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLFALFLFFIL 128 (137)
Q Consensus 50 D~~Ld~L~~~V~~LK~-va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~~~~~~~lil~~v~vffvl 128 (137)
|.-=+.|..-+..++. +-.+|+.|=..-......++..+..+.+++......++.-+.+.++-.+=|++.+++.++-++
T Consensus 90 e~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K~~~lr~~~g~i~~~~a~~ 169 (177)
T PF07798_consen 90 EKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKIDTEIANLRTEIESLKWDTLRWLVGVIFGCVALV 169 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444 333333332223333344444444444444444444444444332222223444444333333
Q ss_pred HHHHHH
Q 032617 129 YMWSKM 134 (137)
Q Consensus 129 y~l~k~ 134 (137)
.-++|+
T Consensus 170 la~~r~ 175 (177)
T PF07798_consen 170 LAILRL 175 (177)
T ss_pred HHHHHH
Confidence 334443
No 23
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=95.90 E-value=0.19 Score=31.87 Aligned_cols=60 Identities=8% Similarity=0.117 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617 49 LDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK 108 (137)
Q Consensus 49 qD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~ 108 (137)
..+.|+.=...+...-.+|.+|.+++..|.+.|....+.++.+.+.|..+.+-|+++.++
T Consensus 6 e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~rR 65 (66)
T PF12352_consen 6 ESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISRR 65 (66)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcc
Confidence 344777777888888899999999999999999999999999999999999888887664
No 24
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=95.87 E-value=0.23 Score=32.40 Aligned_cols=62 Identities=19% Similarity=0.282 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHH
Q 032617 69 EIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLFALFLFFILYMWSK 133 (137)
Q Consensus 69 ~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~~~~~~~lil~~v~vffvly~l~k 133 (137)
.|...++++.+-++.++..-+.....+++...+++++-.. .+|.|.+++-+++ .+++|+++|
T Consensus 10 ~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n--~kW~~r~iiGaiI-~~i~~~i~K 71 (71)
T PF10779_consen 10 RIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSN--TKWIWRTIIGAII-TAIIYLIIK 71 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-HHHHHHHhC
Confidence 4455566666777777777778888888888889888875 3444444443333 345566554
No 25
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.55 E-value=0.21 Score=39.88 Aligned_cols=73 Identities=18% Similarity=0.192 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcC-CchhHHHHHHHHHHHHHHHHH
Q 032617 59 QVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHG-SNHIMHVVLFALFLFFILYMW 131 (137)
Q Consensus 59 ~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~-~~~~~~lil~~v~vffvly~l 131 (137)
.|..+=.+|..-.+.+..|+.+|.++++-|..+.+++=....-|.++-.+.. ...++-+|+-+|.+||++||+
T Consensus 157 ~vde~Is~A~aTre~l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll~kIk~kkrrdslILa~Vis~C~llllfy~~ 230 (231)
T KOG3208|consen 157 LVDELISQAQATRENLHSQRSVLGGINNKVNNIANRFPAINQLLQKIKIKKRRDSLILAAVISVCTLLLLFYWI 230 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 3444445677777888899999999999999999988888777777766543 334444455555555666654
No 26
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.36 E-value=0.7 Score=33.37 Aligned_cols=52 Identities=17% Similarity=0.240 Sum_probs=22.2
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 032617 45 VNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKN 97 (137)
Q Consensus 45 ~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~ 97 (137)
..+|-|+-.+-+..-|...=+=...+ +|+++-.+-|....+.|.++..+|++
T Consensus 34 tq~QvdeVv~IMr~NV~KVlER~ekL-~~L~drad~L~~~as~F~~~A~klkr 85 (116)
T KOG0860|consen 34 TQAQVDEVVDIMRENVEKVLERGEKL-DELDDRADQLQAGASQFEKTAVKLKR 85 (116)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhcchH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555444332222221 23333344444444444444444444
No 27
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=94.91 E-value=0.74 Score=31.26 Aligned_cols=83 Identities=17% Similarity=0.140 Sum_probs=47.4
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH----HhhhhHHHHHHHHHHHhhcCCchhHHHHHH
Q 032617 46 NADLDDEITGLRSQVKQLRNVAQEIHSEASFQKD-FLDQLQMTLIK----AQAGVKNNMRRLNKSIVKHGSNHIMHVVLF 120 (137)
Q Consensus 46 ~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~-lLD~l~~~~d~----~~~~L~~t~~rl~~v~~~~~~~~~~~lil~ 120 (137)
.++-++..+.+..-++.++..+....+++++.-. .+++..+.... +..+.+.....+...++. +.|.-|.+
T Consensus 4 ~~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~e----~P~~svgi 79 (94)
T PF05957_consen 4 KAELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQAREQAREAAEQTEDYVRE----NPWQSVGI 79 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----ChHHHHHH
Confidence 3556667777777777777766666666665433 44444444443 333344444444444443 55666777
Q ss_pred HHHHHHHHHHHH
Q 032617 121 ALFLFFILYMWS 132 (137)
Q Consensus 121 ~v~vffvly~l~ 132 (137)
++++-|++=+++
T Consensus 80 AagvG~llG~Ll 91 (94)
T PF05957_consen 80 AAGVGFLLGLLL 91 (94)
T ss_pred HHHHHHHHHHHH
Confidence 777666665554
No 28
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.53 E-value=1 Score=36.92 Aligned_cols=94 Identities=12% Similarity=0.124 Sum_probs=75.9
Q ss_pred hhHhhhcchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCchhHH
Q 032617 37 EIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMH 116 (137)
Q Consensus 37 ~~q~~~~~~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~~~~~~~ 116 (137)
.++.+.+.+ .+-+..+-++.+-...|..+-+.=|+-|+.=..=++.....+..+...|.++.+-=++..+.. -...|+
T Consensus 174 ~ieeR~q~I-~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~-~~ll~v 251 (269)
T KOG0811|consen 174 LIEEREQAI-EQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKK-CILLLV 251 (269)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch-hhhhHH
Confidence 344444554 677888899999999999999999999999989999999999999999999998877777754 446677
Q ss_pred HHHHHHHHHHHHHHHH
Q 032617 117 VVLFALFLFFILYMWS 132 (137)
Q Consensus 117 lil~~v~vffvly~l~ 132 (137)
++++++++++++|...
T Consensus 252 ~~~v~lii~l~i~~~~ 267 (269)
T KOG0811|consen 252 GGPVGLIIGLIIAGIA 267 (269)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 7777777788877654
No 29
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=94.28 E-value=0.88 Score=34.41 Aligned_cols=56 Identities=23% Similarity=0.260 Sum_probs=36.8
Q ss_pred CCCchhhHhhhcchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 032617 32 VAGSDEIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVK 96 (137)
Q Consensus 32 ~~~~~~~q~~~~~~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~ 96 (137)
.++.||+++.-|.. ...+..+.|.....+|+.++..+.+ +|+++....++..+.+.
T Consensus 35 ~~~~deldEEfD~~--ps~~~~~~lr~Rydrlr~va~rvQ~-------vlgd~At~gERl~alls 90 (156)
T PF08372_consen 35 SAHPDELDEEFDTF--PSSRPPDSLRMRYDRLRSVAGRVQN-------VLGDVATQGERLQALLS 90 (156)
T ss_pred cCCcchhhhhhccc--ccccccHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhc
Confidence 34456666544443 2345677899999999999977654 67777776666555443
No 30
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.65 E-value=1.3 Score=34.78 Aligned_cols=44 Identities=7% Similarity=0.138 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 032617 61 KQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNK 104 (137)
Q Consensus 61 ~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~ 104 (137)
....+....+.+++.+.+..+.+|+..-++....|..+..++..
T Consensus 114 ~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 114 NTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555555555555555443
No 31
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=93.21 E-value=1.8 Score=35.62 Aligned_cols=81 Identities=12% Similarity=0.093 Sum_probs=63.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCchhHHHHHHHHHHHH
Q 032617 47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLFALFLFF 126 (137)
Q Consensus 47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~~~~~~~lil~~v~vff 126 (137)
..--+.+-+|.+....|+.+-.+=|.-|+.=..-|+.+.+.+.+|...|.+++..=++.-+. +.+.++.++++++++|+
T Consensus 198 ~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~-~~~~Llil~vv~lfv~l 276 (283)
T COG5325 198 KNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKC-RFYLLLILLVVLLFVSL 276 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccc-hhhHHHHHHHHHHHHHH
Confidence 44567777888888888887777777788777788888888888888888888888777774 57777778888877776
Q ss_pred HH
Q 032617 127 IL 128 (137)
Q Consensus 127 vl 128 (137)
++
T Consensus 277 ~~ 278 (283)
T COG5325 277 IK 278 (283)
T ss_pred HH
Confidence 64
No 32
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=92.91 E-value=2 Score=29.11 Aligned_cols=78 Identities=23% Similarity=0.311 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhHHHHHH---HHHHHhhcCCc-hhHHHHHHHHHHHHHHHHHH
Q 032617 60 VKQLRNVAQEIHSEASFQKDFLDQLQ---MTLIKAQAGVKNNMRR---LNKSIVKHGSN-HIMHVVLFALFLFFILYMWS 132 (137)
Q Consensus 60 V~~LK~va~~I~~Ev~~Qn~lLD~l~---~~~d~~~~~L~~t~~r---l~~v~~~~~~~-~~~~lil~~v~vffvly~l~ 132 (137)
...|+.....+.+|++.-..-++.|. ..+.++.+.+...... =++++++=... ..=.+++++.++||++-++|
T Consensus 7 T~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~~~v~y 86 (92)
T PF03908_consen 7 TESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFLLVVLY 86 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34555555666666665555444444 3333333333332222 22233321111 11235556666666666666
Q ss_pred HHhcC
Q 032617 133 KMFRR 137 (137)
Q Consensus 133 k~~~~ 137 (137)
=++||
T Consensus 87 I~~rR 91 (92)
T PF03908_consen 87 ILWRR 91 (92)
T ss_pred Hhhhc
Confidence 55554
No 33
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=92.73 E-value=1.2 Score=29.44 Aligned_cols=58 Identities=19% Similarity=0.265 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHh
Q 032617 73 EASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLFALFLFFILYMWSKMF 135 (137)
Q Consensus 73 Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~~~~~~~lil~~v~vffvly~l~k~~ 135 (137)
|-.+=++-||++++.++.+...+-...+| =+ +..-+++|-+++.+++|+++..+.++|
T Consensus 13 ~~~~i~~rLd~iEeKvEf~~~Ei~Qr~Gk---ki--GRDiGIlYG~v~Glii~~~~~~l~~~~ 70 (70)
T PF04210_consen 13 DFNEIMKRLDEIEEKVEFTNAEIAQRAGK---KI--GRDIGILYGLVIGLIIFIIYIVLSSMF 70 (70)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhH---Hh--hhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33444456777777777666655433221 11 124578888888777777766666543
No 34
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.71 E-value=1.6 Score=36.16 Aligned_cols=67 Identities=16% Similarity=0.253 Sum_probs=43.8
Q ss_pred hhHhhhcchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 032617 37 EIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNK 104 (137)
Q Consensus 37 ~~q~~~~~~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~ 104 (137)
.+|.+...+ +--+-.+.+|++--.+|-++-..=++-+..-....|+.+-.++.+...|.+...++..
T Consensus 221 Y~Q~R~~~~-q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSS 287 (311)
T KOG0812|consen 221 YVQERAKTM-QNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSS 287 (311)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhcc
Confidence 445555444 4456677777777766666555555555555567777777888888888777777743
No 35
>PHA02650 hypothetical protein; Provisional
Probab=91.84 E-value=0.39 Score=32.40 Aligned_cols=57 Identities=9% Similarity=0.012 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHH---hhcCCchhHHH---HHHHHHHHHHHHHHHHHhcC
Q 032617 81 LDQLQMTLIKAQAGVKNNMRRLNKSI---VKHGSNHIMHV---VLFALFLFFILYMWSKMFRR 137 (137)
Q Consensus 81 LD~l~~~~d~~~~~L~~t~~rl~~v~---~~~~~~~~~~l---il~~v~vffvly~l~k~~~~ 137 (137)
|..-+++|++--+-++.++..=+... +++.+..|+++ +++++++.|++++.+|..||
T Consensus 13 msS~DdDFnnFI~VVkSVLtD~~~~~~~~~~~~~~~~~~~ii~i~~v~i~~l~~flYLK~~~r 75 (81)
T PHA02650 13 MSSTDDDFNNFIDVVKSVLSDEDGSKKTIKSVSWFNGQNFIFLIFSLIIVALFSFFVFKGYTR 75 (81)
T ss_pred cCCcHHHHHHHHHHHHHHHcCCCCccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34446677776666666654421122 22223333322 22334444556666676553
No 36
>PF11902 DUF3422: Protein of unknown function (DUF3422); InterPro: IPR021830 This family of proteins are functionally uncharacterised. This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 426 to 444 amino acids in length.
Probab=91.75 E-value=4.7 Score=35.02 Aligned_cols=56 Identities=13% Similarity=0.229 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhHHHHHHHHHH
Q 032617 49 LDDEITGLRSQVKQLRN-VAQEIHSEASFQKD-FLDQLQMTLIKAQAGVKNNMRRLNKS 105 (137)
Q Consensus 49 qD~~Ld~L~~~V~~LK~-va~~I~~Ev~~Qn~-lLD~l~~~~d~~~~~L~~t~~rl~~v 105 (137)
-.++++.|+.+|.+.-+ +-..|.=+++.||. ||..|+.- .+.+-+|..|..-+.-+
T Consensus 310 ~~~R~~~Ls~rv~Ra~~LLRTrVdv~le~QN~~LL~SM~rR-a~lQLrLQqtVEGLSVv 367 (420)
T PF11902_consen 310 VERRQEDLSRRVARATDLLRTRVDVELEQQNQDLLASMDRR-ARLQLRLQQTVEGLSVV 367 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHH
Confidence 46788889999988887 66778888888887 88888765 35666777776655443
No 37
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=91.66 E-value=3.4 Score=30.20 Aligned_cols=62 Identities=11% Similarity=0.189 Sum_probs=51.0
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617 46 NADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 46 ~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
-++--+++|.|..++...+.++..|.+||.+=..-++.+..+++..+..+..--.||..+-.
T Consensus 63 KkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~ 124 (126)
T PF07889_consen 63 KKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEE 124 (126)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45567888899999999999999999999888888888888888888888877777766543
No 38
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=91.39 E-value=2.7 Score=32.26 Aligned_cols=62 Identities=16% Similarity=0.168 Sum_probs=55.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617 47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK 108 (137)
Q Consensus 47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~ 108 (137)
.+.+..+..|...+..|+.=-.+...|+++.++.++.+.|.+....-.+.-.-.++.++-..
T Consensus 112 ~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~E 173 (194)
T PF08614_consen 112 SEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEE 173 (194)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888999999999999998899999999999999999999999999988888888887764
No 39
>PRK00846 hypothetical protein; Provisional
Probab=91.22 E-value=2.7 Score=28.18 Aligned_cols=51 Identities=6% Similarity=-0.000 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 032617 48 DLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNN 98 (137)
Q Consensus 48 eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t 98 (137)
+-+++++.|..++.-.-..-...++.|-.|...+|.|...+.....+|+..
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457899999999999999888999999999999999888887777776654
No 40
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=90.82 E-value=2.6 Score=29.76 Aligned_cols=49 Identities=18% Similarity=0.211 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 032617 48 DLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVK 96 (137)
Q Consensus 48 eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~ 96 (137)
.|.++++.|.++|..+-..=.....|++.|.+.|+.+...+.+-..+|.
T Consensus 50 ~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRLD 98 (102)
T PF01519_consen 50 AQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRLD 98 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666666666666666666666777777777777766666665554
No 41
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=90.69 E-value=2.4 Score=27.45 Aligned_cols=50 Identities=16% Similarity=0.216 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 032617 50 DDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNM 99 (137)
Q Consensus 50 D~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~ 99 (137)
+++++.|..++.-+-..-..+++.|-.|...||.|...+.....+|+...
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67899999999999988889999999999999999988888887777643
No 42
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.52 E-value=2.4 Score=33.66 Aligned_cols=78 Identities=10% Similarity=0.173 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHH
Q 032617 53 ITGLRSQVKQLRN-VAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLFALFLFFILYMW 131 (137)
Q Consensus 53 Ld~L~~~V~~LK~-va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~~~~~~~lil~~v~vffvly~l 131 (137)
++.+.+.+..++. ++..|.+ +-.-++.|+.+++.-++....=+...+..+.+...+-...++..++|.++++|.++++
T Consensus 136 ~~~~n~el~~v~~im~~nied-vl~rg~~l~~l~~~~s~l~~~s~~y~~~a~~in~~sl~~~~aa~~~~~~~l~f~~~f~ 214 (216)
T KOG0862|consen 136 LLKLNQELQDVQRIMVENLED-VLQRGEVLNALSSMASELSSESRKYPKTAKGINRKSLIRKYAAYVVFFVLLLFYVRFI 214 (216)
T ss_pred HHHHHHHHHHHHHHHHHhHHH-HHhhchHHHhhhhhhhcccHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444 4555544 4445566666665555544444444444444444432334444444444444444443
No 43
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=90.33 E-value=3.1 Score=27.44 Aligned_cols=56 Identities=18% Similarity=0.236 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHH
Q 032617 73 EASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLFALFLFFILYMWSK 133 (137)
Q Consensus 73 Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~~~~~~~lil~~v~vffvly~l~k 133 (137)
|-++=++-||++++.++.+...+.+..++ =. +..-+++|-+++.+++|.++-.++.
T Consensus 13 d~~~i~~rLd~iEeKVEf~~~E~~Qr~Gk---k~--GRDiGIlYG~viGlli~~~~~~l~~ 68 (70)
T TIGR01149 13 EFNEVMKRLDEIEEKVEFVNGEVAQRIGK---KV--GRDIGILYGLVIGLILFLIYILLSS 68 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH---Hh--hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444556777777777666655433221 11 1234677776666655544444443
No 44
>PRK00736 hypothetical protein; Provisional
Probab=89.84 E-value=3.8 Score=26.60 Aligned_cols=48 Identities=15% Similarity=0.198 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 032617 50 DDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKN 97 (137)
Q Consensus 50 D~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~ 97 (137)
+++++.|..++.-+-..-..+++.|-.|.+-||.|...+.....+|+.
T Consensus 4 e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 4 EERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467999999999998888899999999999998888777777666654
No 45
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.48 E-value=7.1 Score=32.39 Aligned_cols=92 Identities=13% Similarity=0.164 Sum_probs=54.2
Q ss_pred chhhHhhhcchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcC-Cch
Q 032617 35 SDEIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHG-SNH 113 (137)
Q Consensus 35 ~~~~q~~~~~~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~-~~~ 113 (137)
-.++|.+.+.+ .+-+..+.+|++--..+-.+-..=++-|+.=..-..+-.+.++.+.+.++++.+ .-+++. +..
T Consensus 198 l~Eiq~Rh~~i-k~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~----~qkkaRK~k~ 272 (297)
T KOG0810|consen 198 LAEIQERHDEI-KKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVK----YQKKARKWKI 272 (297)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhcee
Confidence 35777777766 677888888887776666666555555655555555566666666666666633 333333 333
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 032617 114 IMHVVLFALFLFFILYMW 131 (137)
Q Consensus 114 ~~~lil~~v~vffvly~l 131 (137)
+|+++++++++++++|+.
T Consensus 273 i~ii~~iii~~v~v~~i~ 290 (297)
T KOG0810|consen 273 IIIIILIIIIVVLVVVIV 290 (297)
T ss_pred eeehHHHHHHHHHhhhhc
Confidence 444444444444444443
No 46
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=88.63 E-value=5.3 Score=26.45 Aligned_cols=60 Identities=20% Similarity=0.249 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhc
Q 032617 72 SEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLFALFLFFILYMWSKMFR 136 (137)
Q Consensus 72 ~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~~~~~~~lil~~v~vffvly~l~k~~~ 136 (137)
+|.++-++-||+++..++.+...+- +|+.+=.. ..-+++|-+++.++++.+.-.+.+.|+
T Consensus 15 ~dfne~~kRLdeieekvef~~~Ev~---Qr~GkkiG--RDIGILYGlVIGlil~~i~~~l~~~~~ 74 (75)
T COG4064 15 DDFNEIHKRLDEIEEKVEFVNGEVY---QRIGKKIG--RDIGILYGLVIGLILCMIYILLGVAFR 74 (75)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHhc--chHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556667778888887777766543 33333222 245677766666666555555555443
No 47
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=88.31 E-value=9.4 Score=30.86 Aligned_cols=21 Identities=5% Similarity=0.053 Sum_probs=11.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 032617 113 HIMHVVLFALFLFFILYMWSK 133 (137)
Q Consensus 113 ~~~~lil~~v~vffvly~l~k 133 (137)
++++++++.+++.+++|+++|
T Consensus 293 gy~~~l~~m~~i~~~~~~~fk 313 (318)
T TIGR00383 293 GYPAVLIVMAVIALGPLIYFR 313 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555666665
No 48
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=88.03 E-value=6.2 Score=26.52 Aligned_cols=56 Identities=11% Similarity=0.183 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHH
Q 032617 73 EASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLFALFLFFILYMWSK 133 (137)
Q Consensus 73 Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~~~~~~~lil~~v~vffvly~l~k 133 (137)
|-++=++-||++++.++.+...+.+..++ =. +..-+++|-+++.+++|++.-.+..
T Consensus 16 d~~~i~~rLD~iEeKVEftn~Ei~Qr~Gk---kv--GRDiGIlYG~viGlli~~i~~~~~~ 71 (77)
T PRK01026 16 DFKEIQKRLDEIEEKVEFTNAEIFQRIGK---KV--GRDIGILYGLVIGLLIVLVYIILSP 71 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH---Hh--hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556777777776666655432221 11 1235677766666665555444443
No 49
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=87.96 E-value=7.2 Score=27.24 Aligned_cols=46 Identities=22% Similarity=0.126 Sum_probs=39.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032617 47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQ 92 (137)
Q Consensus 47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~ 92 (137)
.|+|.++..|.+--...++-=..|.+-+..|+...+.|+-.||+..
T Consensus 7 ~e~e~Ri~rLEendk~i~~~L~~Ik~gq~~qe~v~~kld~tlD~i~ 52 (98)
T PF11166_consen 7 HEHEWRIRRLEENDKTIFNKLDEIKDGQHDQELVNQKLDRTLDEIN 52 (98)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHhHhhHHHHHHHHHhhHHHHH
Confidence 3788888888888888888888999999999999999999998843
No 50
>PRK00295 hypothetical protein; Provisional
Probab=87.66 E-value=5.7 Score=25.74 Aligned_cols=48 Identities=15% Similarity=0.218 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 032617 50 DDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKN 97 (137)
Q Consensus 50 D~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~ 97 (137)
+++++.|..++.-+-..-..+++.|-.|.+-||.|...+.....+|+.
T Consensus 4 e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 4 EERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999998888888888999999998888888777777666655
No 51
>PF07340 Herpes_IE1: Cytomegalovirus IE1 protein; InterPro: IPR010855 Expression from a human cytomegalovirus early promoter (E1.7) has been shown to be activated in trans by the IE2 gene product. Although the IE1 gene product alone had no effect on this early viral promoter, maximal early promoter activity was detected when both IE1 and IE2 gene products were present []. The IE1 protein from cytomegalovirus is also known as UL123.; GO: 0050792 regulation of viral reproduction, 0042025 host cell nucleus
Probab=87.60 E-value=5.7 Score=34.09 Aligned_cols=100 Identities=19% Similarity=0.119 Sum_probs=61.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC----------------------CCCCCchhhHhhhcchhHhhHHHHHH-HHHHHHHHH
Q 032617 8 GGAGGPFYGGAAPYRSREGLTT----------------------RPVAGSDEIQLRIDPVNADLDDEITG-LRSQVKQLR 64 (137)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~g~~~----------------------r~~~~~~~~q~~~~~~~~eqD~~Ld~-L~~~V~~LK 64 (137)
+||..++. +..|.+..|...+ =|.++.+.++.-.+.++..+|.-... +..-|.++|
T Consensus 13 ~~p~~gps-~k~pr~e~pv~~A~~fLek~l~~E~~~~lsLGDPLf~~~~~~~~kt~e~i~~e~~~~p~~~~~q~lv~QiK 91 (392)
T PF07340_consen 13 AGPDPGPS-PKMPRPEDPVTRAVQFLEKMLADETNTQLSLGDPLFPDVSEDPFKTFEDIINECDDNPGKDVLQELVKQIK 91 (392)
T ss_pred CCCCCCCC-CCCCCCCChHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCchhhHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 77777766 5667665554211 12344556665566665566666666 466666665
Q ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617 65 NVAQEIHSEASFQ-----KDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK 108 (137)
Q Consensus 65 ~va~~I~~Ev~~Q-----n~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~ 108 (137)
---..-+.|+.+| |++=..+...|...++.|++++.-++++...
T Consensus 92 lrv~~~r~~~k~~~l~qy~~~r~~~~~~F~~i~~~l~n~~~lL~k~~ep 140 (392)
T PF07340_consen 92 LRVARNRTEIKEQMLKQYNQIRMVFIGKFNDIQGGLQNAIDLLNKVMEP 140 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 5344445555544 3344566677888888888888888888763
No 52
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.41 E-value=4.3 Score=32.34 Aligned_cols=66 Identities=18% Similarity=0.251 Sum_probs=38.0
Q ss_pred HHHHHHHHHH-HHHHHHH---HHHHHHhhhhHHHHHHHHHHHhhcC--CchhH--HHHHHHHHHHHHHHHHHHH
Q 032617 69 EIHSEASFQK-DFLDQLQ---MTLIKAQAGVKNNMRRLNKSIVKHG--SNHIM--HVVLFALFLFFILYMWSKM 134 (137)
Q Consensus 69 ~I~~Ev~~Qn-~lLD~l~---~~~d~~~~~L~~t~~rl~~v~~~~~--~~~~~--~lil~~v~vffvly~l~k~ 134 (137)
.|-.|-++=. ++|.+|. +...++...|..+...+.+-.+.=. .+..| .+++.++++.+++.+++.+
T Consensus 142 Ria~ETEqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~nk~~~~aii~~l~~~il~il 215 (220)
T KOG1666|consen 142 RIALETEQIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLIRNKFTLTAIIALLVLAILLIL 215 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444332 3788887 5677888888888887777666311 22333 2444555555555555544
No 53
>PRK02119 hypothetical protein; Provisional
Probab=86.97 E-value=6.7 Score=25.79 Aligned_cols=51 Identities=20% Similarity=0.301 Sum_probs=41.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 032617 47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKN 97 (137)
Q Consensus 47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~ 97 (137)
..-+++++.|..++.-+-..-..+++.|-.|.+-||.|...+.....+|+.
T Consensus 5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345789999999999988888889999999988888888777666665544
No 54
>PHA02844 putative transmembrane protein; Provisional
Probab=86.82 E-value=0.79 Score=30.59 Aligned_cols=21 Identities=14% Similarity=0.009 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHH
Q 032617 81 LDQLQMTLIKAQAGVKNNMRR 101 (137)
Q Consensus 81 LD~l~~~~d~~~~~L~~t~~r 101 (137)
|..-+++|++--+-++.++..
T Consensus 13 msS~DdDFnnFI~vVksVLtd 33 (75)
T PHA02844 13 LSSENEDFNNFIDVVKSVLSD 33 (75)
T ss_pred cCCchHHHHHHHHHHHHHHcC
Confidence 334456666666666555443
No 55
>PRK04325 hypothetical protein; Provisional
Probab=86.73 E-value=7 Score=25.75 Aligned_cols=48 Identities=23% Similarity=0.284 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 032617 50 DDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKN 97 (137)
Q Consensus 50 D~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~ 97 (137)
+++++.|..++.-+-..-..+++.|-.|.+.|+.|...+.....+|+.
T Consensus 8 e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 8 EDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999998888899999999999888888777666665544
No 56
>PRK02793 phi X174 lysis protein; Provisional
Probab=86.36 E-value=7.2 Score=25.55 Aligned_cols=50 Identities=14% Similarity=0.156 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 032617 48 DLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKN 97 (137)
Q Consensus 48 eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~ 97 (137)
+-+++++.|..++.-+-..-..+++.|-.|.+-+|.|...+.....+|+.
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35688999999998888888888888888888888887776666655544
No 57
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=86.31 E-value=12 Score=28.20 Aligned_cols=91 Identities=19% Similarity=0.278 Sum_probs=59.6
Q ss_pred hhhHhhhcchhHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCchh
Q 032617 36 DEIQLRIDPVNADLDDEITGLRSQVKQL-RNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHI 114 (137)
Q Consensus 36 ~~~q~~~~~~~~eqD~~Ld~L~~~V~~L-K~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~~~~~ 114 (137)
+.++..++.++++-.+.++.+...++-- ..-=..|.+|...++.-+.+++..++.--+.|+..+..++-=.-+ |.
T Consensus 83 e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K~~~lr----~~ 158 (177)
T PF07798_consen 83 EKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKIDTEIANLRTEIESLKWDTLR----WL 158 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH
Confidence 4667777777777666777777766522 222237888888888889999999998888888888776554443 33
Q ss_pred HHHHHHHHHHHHHHHH
Q 032617 115 MHVVLFALFLFFILYM 130 (137)
Q Consensus 115 ~~lil~~v~vffvly~ 130 (137)
.-+|+.++.+.+-+|.
T Consensus 159 ~g~i~~~~a~~la~~r 174 (177)
T PF07798_consen 159 VGVIFGCVALVLAILR 174 (177)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4344444443333333
No 58
>PRK04406 hypothetical protein; Provisional
Probab=86.30 E-value=7.5 Score=25.73 Aligned_cols=50 Identities=22% Similarity=0.296 Sum_probs=39.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 032617 48 DLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKN 97 (137)
Q Consensus 48 eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~ 97 (137)
.-+++++.|..++.-+-..-..+++.|-.|.+-||.|...+.....+|+.
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34688999999999888888888888888988888888777666555543
No 59
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=84.67 E-value=9.3 Score=25.35 Aligned_cols=52 Identities=12% Similarity=0.183 Sum_probs=32.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 032617 47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNM 99 (137)
Q Consensus 47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~ 99 (137)
.|-|+--+.+.+.+..+-+=+..|.+ +.+.-+-|.+-...|.+...+|++.+
T Consensus 10 ~~v~~v~~im~~Ni~~ll~Rge~L~~-L~~kt~~L~~~a~~F~k~a~~l~r~~ 61 (89)
T PF00957_consen 10 EQVEEVKNIMRENIDKLLERGEKLEE-LEDKTEELSDNAKQFKKNAKKLKRKM 61 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHH-HHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 44455555555555555555555543 66666677777777777777777666
No 60
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=84.58 E-value=4.8 Score=26.92 Aligned_cols=50 Identities=20% Similarity=0.298 Sum_probs=39.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 032617 47 ADLDDEITGLRSQVKQLRNVAQE---IHSEASFQKDFLDQLQMTLIKAQAGVK 96 (137)
Q Consensus 47 ~eqD~~Ld~L~~~V~~LK~va~~---I~~Ev~~Qn~lLD~l~~~~d~~~~~L~ 96 (137)
.+=|+..|.|...|..++.--.+ |.+-++.|..-|+++++.+++-..-|.
T Consensus 14 k~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~iL~ 66 (75)
T PF05531_consen 14 KAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQDILN 66 (75)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 56789999999999988885555 778888888888888887777665553
No 61
>PRK10404 hypothetical protein; Provisional
Probab=83.76 E-value=12 Score=26.07 Aligned_cols=85 Identities=8% Similarity=-0.015 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhHHHHHH----HHHHHhhcC---CchhHHHHH
Q 032617 48 DLDDEITGLRSQVKQLRNVAQEIHSEASFQKD-FLDQLQMTLIKAQAGVKNNMRR----LNKSIVKHG---SNHIMHVVL 119 (137)
Q Consensus 48 eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~-lLD~l~~~~d~~~~~L~~t~~r----l~~v~~~~~---~~~~~~lil 119 (137)
+.++-.++|..-+..+..+-..-.++..++.+ +=+.++..++.+..+|..+... .+....... .-+.|..|.
T Consensus 6 ~~~~l~~dl~~L~~dle~Ll~~~~~~a~e~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~e~Pw~avG 85 (101)
T PRK10404 6 GDTRIDDDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKPWQGIG 85 (101)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence 44555555555555555555555555544433 3344555555555544443332 233332211 125566777
Q ss_pred HHHHHHHHHHHHH
Q 032617 120 FALFLFFILYMWS 132 (137)
Q Consensus 120 ~~v~vffvly~l~ 132 (137)
++..+-|++=+++
T Consensus 86 iaagvGlllG~Ll 98 (101)
T PRK10404 86 VGAAVGLVLGLLL 98 (101)
T ss_pred HHHHHHHHHHHHH
Confidence 7777766666664
No 62
>PF15106 TMEM156: TMEM156 protein family
Probab=83.29 E-value=1.5 Score=34.84 Aligned_cols=25 Identities=20% Similarity=0.493 Sum_probs=19.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhc
Q 032617 112 NHIMHVVLFALFLFFILYMWSKMFR 136 (137)
Q Consensus 112 ~~~~~lil~~v~vffvly~l~k~~~ 136 (137)
+-.||+.+++|++|+|+.++.|++.
T Consensus 175 KITWYvLVllVfiflii~iI~KIle 199 (226)
T PF15106_consen 175 KITWYVLVLLVFIFLIILIIYKILE 199 (226)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888888888888888753
No 63
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=83.02 E-value=12 Score=25.49 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=18.5
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617 83 QLQMTLIKAQAGVKNNMRRLNKSIVK 108 (137)
Q Consensus 83 ~l~~~~d~~~~~L~~t~~rl~~v~~~ 108 (137)
++++.+......+.+-=+.++.+-+.
T Consensus 40 ~lE~E~~~l~~~l~~~E~eL~~LrkE 65 (85)
T PF15188_consen 40 SLEKELNELKEKLENNEKELKLLRKE 65 (85)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 45577777777777777777777664
No 64
>PHA02819 hypothetical protein; Provisional
Probab=82.52 E-value=2.6 Score=27.82 Aligned_cols=26 Identities=8% Similarity=-0.055 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617 81 LDQLQMTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 81 LD~l~~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
|..-+++|++--+-++.++.. +....
T Consensus 13 msS~DdDFnnFI~VVksVLtd-~s~~~ 38 (71)
T PHA02819 13 MSSSDDDFNNFINVVKSVLNN-ENYNK 38 (71)
T ss_pred hCCchhHHHHHHHHHHHHHcC-CCCcc
Confidence 445577888877777777776 44333
No 65
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=82.41 E-value=23 Score=33.00 Aligned_cols=7 Identities=0% Similarity=0.453 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 032617 61 KQLRNVA 67 (137)
Q Consensus 61 ~~LK~va 67 (137)
++++++.
T Consensus 342 ~~~~~ip 348 (806)
T PF05478_consen 342 SRFNDIP 348 (806)
T ss_pred HHHHHHH
Confidence 3333333
No 66
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=82.15 E-value=10 Score=23.95 Aligned_cols=38 Identities=26% Similarity=0.351 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032617 50 DDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMT 87 (137)
Q Consensus 50 D~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~ 87 (137)
...++.|++-|..+|.=.....+|...-|.-||++...
T Consensus 16 ~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a~s 53 (56)
T PF04728_consen 16 NSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIAQS 53 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Confidence 55566666666666666666666777667666665543
No 67
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=82.15 E-value=1.6 Score=33.28 Aligned_cols=20 Identities=40% Similarity=0.557 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 032617 117 VVLFALFLFFILYMWSKMFR 136 (137)
Q Consensus 117 lil~~v~vffvly~l~k~~~ 136 (137)
+|++++.+++++|+++|.+|
T Consensus 99 ~Vl~g~s~l~i~yfvir~~R 118 (163)
T PF06679_consen 99 YVLVGLSALAILYFVIRTFR 118 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 56667777888999999987
No 68
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=81.71 E-value=1.7 Score=27.76 Aligned_cols=18 Identities=11% Similarity=0.495 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032617 117 VVLFALFLFFILYMWSKM 134 (137)
Q Consensus 117 lil~~v~vffvly~l~k~ 134 (137)
+++.++++|+++|++..+
T Consensus 41 i~~~~~i~~l~v~~~~~~ 58 (59)
T PF09889_consen 41 IFFGIFILFLAVWIFMTF 58 (59)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344444555666666654
No 69
>PHA03054 IMV membrane protein; Provisional
Probab=81.56 E-value=2.3 Score=28.16 Aligned_cols=21 Identities=14% Similarity=-0.050 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHH
Q 032617 82 DQLQMTLIKAQAGVKNNMRRL 102 (137)
Q Consensus 82 D~l~~~~d~~~~~L~~t~~rl 102 (137)
..-+++|++--+-++.++..=
T Consensus 14 ss~d~Df~~Fi~vV~sVl~dk 34 (72)
T PHA03054 14 GSPEDDLTDFIEIVKSVLSDE 34 (72)
T ss_pred CCchHHHHHHHHHHHHHHcCC
Confidence 334667776666666665543
No 70
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=81.54 E-value=27 Score=28.45 Aligned_cols=89 Identities=9% Similarity=0.190 Sum_probs=48.5
Q ss_pred hhHhhhcchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCc-hhH
Q 032617 37 EIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSN-HIM 115 (137)
Q Consensus 37 ~~q~~~~~~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~~~-~~~ 115 (137)
+.|.+.+.+ ..-++.+.+|.+-..-+-++-..=..-|+--++-+.+-..++.....-+.++.+-....-++.=.| ++|
T Consensus 179 Evq~Rh~~i-kkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaaRkkki~c~gI~ 257 (280)
T COG5074 179 EVQARHQEI-KKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAARKKKIRCYGIC 257 (280)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHHHhcceehhhhH
Confidence 556555443 344444444444444433333333333444455555666667777777777777666666665444 577
Q ss_pred HHHHHHHHHHH
Q 032617 116 HVVLFALFLFF 126 (137)
Q Consensus 116 ~lil~~v~vff 126 (137)
++|++++++|+
T Consensus 258 ~iii~viv~vv 268 (280)
T COG5074 258 FIIIIVIVVVV 268 (280)
T ss_pred HHHHHHHHHHH
Confidence 66555544444
No 71
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=81.22 E-value=2.2 Score=31.03 Aligned_cols=11 Identities=18% Similarity=0.579 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 032617 124 LFFILYMWSKM 134 (137)
Q Consensus 124 vffvly~l~k~ 134 (137)
++|++|++.|.
T Consensus 81 Illi~y~irR~ 91 (122)
T PF01102_consen 81 ILLISYCIRRL 91 (122)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 72
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.81 E-value=28 Score=28.03 Aligned_cols=21 Identities=14% Similarity=0.257 Sum_probs=10.6
Q ss_pred HHHHhhhhHHHHHHHHHHHhh
Q 032617 88 LIKAQAGVKNNMRRLNKSIVK 108 (137)
Q Consensus 88 ~d~~~~~L~~t~~rl~~v~~~ 108 (137)
.|...+.+..|-.|+.++.++
T Consensus 182 lDdl~~e~d~t~srl~~~~~~ 202 (235)
T KOG3202|consen 182 LDDLDNEMDRTESRLDRVMKR 202 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555543
No 73
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=80.72 E-value=28 Score=27.99 Aligned_cols=45 Identities=22% Similarity=0.284 Sum_probs=22.2
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 032617 46 NADLDDEITGLRSQVKQLRNVAQE-IHSEASFQKDFLDQLQMTLIK 90 (137)
Q Consensus 46 ~~eqD~~Ld~L~~~V~~LK~va~~-I~~Ev~~Qn~lLD~l~~~~d~ 90 (137)
+.++|.+-..+..-.+.|+.-+.+ +..+...||+.++-+.+..++
T Consensus 63 ~~~qd~reK~~~~I~ssL~eTtkdf~~~~~k~~~dF~~~Lq~~Lk~ 108 (230)
T PF03904_consen 63 EEKQDIREKNLKEIKSSLEETTKDFIDKTEKVHNDFQDILQDELKD 108 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444455553333 334555666666666554443
No 74
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.58 E-value=14 Score=24.50 Aligned_cols=50 Identities=20% Similarity=0.244 Sum_probs=36.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 032617 47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVK 96 (137)
Q Consensus 47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~ 96 (137)
.+-|+++.+|..++.-.-..=..+++-|.+|-..+|.+...++...++++
T Consensus 4 ~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~ 53 (72)
T COG2900 4 MELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLK 53 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46688899999998877777777788788887777776666555554444
No 75
>PRK10132 hypothetical protein; Provisional
Probab=78.89 E-value=20 Score=25.34 Aligned_cols=20 Identities=10% Similarity=-0.258 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 032617 113 HIMHVVLFALFLFFILYMWS 132 (137)
Q Consensus 113 ~~~~lil~~v~vffvly~l~ 132 (137)
+.|..|.++..+-|++=+++
T Consensus 85 ~Pw~svgiaagvG~llG~Ll 104 (108)
T PRK10132 85 RPWCSVGTAAAVGIFIGALL 104 (108)
T ss_pred CcHHHHHHHHHHHHHHHHHH
Confidence 44556666666666655554
No 76
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=78.57 E-value=11 Score=25.79 Aligned_cols=46 Identities=22% Similarity=0.307 Sum_probs=33.2
Q ss_pred hhhHhhhcchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032617 36 DEIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQ 85 (137)
Q Consensus 36 ~~~q~~~~~~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~ 85 (137)
++++.+++.+ +...+.+.+.|+.+|.-+..-.+|...=|+-||+++
T Consensus 27 dqLss~V~~L----~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN~~ 72 (85)
T PRK09973 27 NQLASNVQTL----NAKIARLEQDMKALRPQIYAAKSEANRANTRLDAQD 72 (85)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 4555555544 566677778888888888888888888888888765
No 77
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=77.38 E-value=22 Score=25.88 Aligned_cols=58 Identities=10% Similarity=0.181 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617 50 DDEITGLRSQVKQLRN-VAQEI---HSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 50 D~~Ld~L~~~V~~LK~-va~~I---~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
-.+|+.+++.++..|. ++..| ...+++|.++-..+.+++..+...+.+.-..++.+-.
T Consensus 49 ~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~ 110 (126)
T PF07889_consen 49 SKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQ 110 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3455555555555543 55444 3455566666666666666666666555555554433
No 78
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=77.30 E-value=13 Score=33.72 Aligned_cols=108 Identities=15% Similarity=0.128 Sum_probs=58.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCchhhHhhhcchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032617 2 ASSSHRGGAGGPFYGGAAPYRSREGLTTRP---VAGSDEIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQK 78 (137)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~r~---~~~~~~~q~~~~~~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn 78 (137)
.+++-.||.-.+..++++.-|..--..+|= ...++.+|.++..+-...++.+..+.......-.-=..|.+=|.+|.
T Consensus 207 YT~sL~g~m~~ggitsaaaIPFs~~vQ~RlN~val~t~VL~~NQk~iA~sFN~Ai~~I~~g~~t~~~Al~KiQ~VVN~q~ 286 (610)
T PF01601_consen 207 YTASLTGGMAFGGITSAAAIPFSTAVQARLNYVALQTDVLQENQKIIANSFNKAIGNIQLGFTTTASALNKIQDVVNQQG 286 (610)
T ss_dssp ---------------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcccccceecchHHHHHHHhcceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445554444344443322333333333 34568999999888788899999988887777776667888888876
Q ss_pred HHH----HHHHHHHHHHhhhhHHHHHHHHHHHhhc
Q 032617 79 DFL----DQLQMTLIKAQAGVKNNMRRLNKSIVKH 109 (137)
Q Consensus 79 ~lL----D~l~~~~d~~~~~L~~t~~rl~~v~~~~ 109 (137)
.-| ..|.+.|.--...+..-..||..+....
T Consensus 287 ~aL~~L~~qL~nnF~AISssI~dIy~RLd~leAda 321 (610)
T PF01601_consen 287 QALNQLTSQLSNNFGAISSSIQDIYNRLDQLEADA 321 (610)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhcc
Confidence 655 5566667777777777788888877653
No 79
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=76.51 E-value=2.3 Score=33.01 Aligned_cols=22 Identities=14% Similarity=0.353 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 032617 115 MHVVLFALFLFFILYMWSKMFR 136 (137)
Q Consensus 115 ~~lil~~v~vffvly~l~k~~~ 136 (137)
.--|++++.+.-|+||+|||.|
T Consensus 164 iGGIVL~LGv~aI~ff~~KF~k 185 (186)
T PF05283_consen 164 IGGIVLTLGVLAIIFFLYKFCK 185 (186)
T ss_pred hhHHHHHHHHHHHHHHHhhhcc
Confidence 3346666777788888888876
No 80
>PHA02975 hypothetical protein; Provisional
Probab=76.42 E-value=3.2 Score=27.29 Aligned_cols=19 Identities=0% Similarity=-0.052 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhhhhHHHHH
Q 032617 82 DQLQMTLIKAQAGVKNNMR 100 (137)
Q Consensus 82 D~l~~~~d~~~~~L~~t~~ 100 (137)
..-+++|++--+-++.++.
T Consensus 14 sS~DdDF~nFI~vVksVLt 32 (69)
T PHA02975 14 ESNDSDFEDFIDTIMHVLT 32 (69)
T ss_pred CCChHHHHHHHHHHHHHHc
Confidence 3445666666555555543
No 81
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=76.26 E-value=20 Score=25.01 Aligned_cols=44 Identities=18% Similarity=0.316 Sum_probs=27.2
Q ss_pred HhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032617 47 ADLDDEITGLRSQVKQL--RNVAQEIHSEASFQKDFLDQLQMTLIK 90 (137)
Q Consensus 47 ~eqD~~Ld~L~~~V~~L--K~va~~I~~Ev~~Qn~lLD~l~~~~d~ 90 (137)
.++|.+++.+..++..| ++=-.++.-++.+.+--++.++..++.
T Consensus 45 ~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~ 90 (106)
T PF10805_consen 45 DEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQG 90 (106)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 56788888888888777 555556666555555444444444433
No 82
>PRK04654 sec-independent translocase; Provisional
Probab=76.06 E-value=31 Score=27.47 Aligned_cols=53 Identities=15% Similarity=0.167 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhhhhHHHHHHHHH
Q 032617 52 EITGLRSQVKQLRNVAQEIHSEASFQKD------FLDQLQMTLIKAQAGVKNNMRRLNK 104 (137)
Q Consensus 52 ~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~------lLD~l~~~~d~~~~~L~~t~~rl~~ 104 (137)
..-.++..|+.+|+...++.+|+++.-+ .|.++...+..+...|++++..++.
T Consensus 28 ~aRtlGk~irk~R~~~~~vk~El~~El~~~ELrk~l~~~~~~i~~~~~~lk~~~~el~q 86 (214)
T PRK04654 28 AARFAGLWVRRARMQWDSVKQELERELEAEELKRSLQDVQASLREAEDQLRNTQQQVEQ 86 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777888888888888887765533 3333344444444455555555543
No 83
>PRK15396 murein lipoprotein; Provisional
Probab=75.91 E-value=18 Score=24.21 Aligned_cols=48 Identities=17% Similarity=0.312 Sum_probs=30.2
Q ss_pred hhhHhhhcchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032617 36 DEIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMT 87 (137)
Q Consensus 36 ~~~q~~~~~~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~ 87 (137)
++++.+++.+ +...+.|.+.+..+|.-+....+|...=|.-||++-.+
T Consensus 28 d~LssqV~~L----~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~~~s 75 (78)
T PRK15396 28 DQLSSDVQTL----NAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQATK 75 (78)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444433 45666677777777777777777777777777766443
No 84
>PHA02692 hypothetical protein; Provisional
Probab=75.43 E-value=5.7 Score=26.19 Aligned_cols=19 Identities=11% Similarity=-0.029 Sum_probs=11.1
Q ss_pred HHHHHHHHHhhhhHHHHHH
Q 032617 83 QLQMTLIKAQAGVKNNMRR 101 (137)
Q Consensus 83 ~l~~~~d~~~~~L~~t~~r 101 (137)
.-+++|++--+-++.++..
T Consensus 15 s~DdDF~~Fi~vVksVLtD 33 (70)
T PHA02692 15 NSDEDFEEFLNIVRTVMTE 33 (70)
T ss_pred CCHHHHHHHHHHHHHHHcC
Confidence 3456666666666665543
No 85
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=75.36 E-value=41 Score=27.04 Aligned_cols=33 Identities=18% Similarity=0.271 Sum_probs=22.0
Q ss_pred hhHhhhcchhHhhHHHHHHHHHHHHHHHHHHHH
Q 032617 37 EIQLRIDPVNADLDDEITGLRSQVKQLRNVAQE 69 (137)
Q Consensus 37 ~~q~~~~~~~~eqD~~Ld~L~~~V~~LK~va~~ 69 (137)
+++.+++..+.++|.-...|.++..-+..-+..
T Consensus 61 ei~~~qd~reK~~~~I~ssL~eTtkdf~~~~~k 93 (230)
T PF03904_consen 61 EIEEKQDIREKNLKEIKSSLEETTKDFIDKTEK 93 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777777766555544433
No 86
>PRK11637 AmiB activator; Provisional
Probab=74.58 E-value=53 Score=28.00 Aligned_cols=56 Identities=13% Similarity=0.160 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617 52 EITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 52 ~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
.++.|...+..+..--..+..+++..+.-|+.++...+.....+......+++.+.
T Consensus 76 ~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlr 131 (428)
T PRK11637 76 QLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLD 131 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444455566666666666666666666666666666665555
No 87
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=74.16 E-value=3.5 Score=28.01 Aligned_cols=13 Identities=15% Similarity=0.135 Sum_probs=5.9
Q ss_pred HHHhhcCCchhHH
Q 032617 104 KSIVKHGSNHIMH 116 (137)
Q Consensus 104 ~v~~~~~~~~~~~ 116 (137)
++++++..+..|.
T Consensus 3 ~i~kK~K~k~~l~ 15 (96)
T PF13800_consen 3 KILKKAKRKSRLR 15 (96)
T ss_pred hHHHHHHHHHHHH
Confidence 4445444444444
No 88
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=73.89 E-value=3.7 Score=34.08 Aligned_cols=20 Identities=20% Similarity=0.554 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 032617 117 VVLFALFLFFILYMWSKMFR 136 (137)
Q Consensus 117 lil~~v~vffvly~l~k~~~ 136 (137)
.|+++|+|++|+|+++|-.|
T Consensus 264 aIliIVLIMvIIYLILRYRR 283 (299)
T PF02009_consen 264 AILIIVLIMVIIYLILRYRR 283 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666777888999998655
No 89
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=73.84 E-value=2.5 Score=37.46 Aligned_cols=49 Identities=18% Similarity=0.253 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHH
Q 032617 81 LDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLFALFLFFILYM 130 (137)
Q Consensus 81 LD~l~~~~d~~~~~L~~t~~rl~~v~~~~~~~~~~~lil~~v~vffvly~ 130 (137)
|++++++++++.+.|+++.+-|.++-... ...+.+++++++++..++|.
T Consensus 440 L~~vn~sL~~A~~~L~~Sn~iL~~v~~~~-~~~~~iI~liVl~iv~iii~ 488 (490)
T PF00523_consen 440 LGQVNNSLNNAKDLLDKSNQILDSVNPGI-SSNSIIIILIVLLIVSIIII 488 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTT------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHHHhHheE
Confidence 44455556666666666666666555532 23333333444444444444
No 90
>PF10831 DUF2556: Protein of unknown function (DUF2556); InterPro: IPR022540 This family of proteins with unknown function appears to be restricted to Enterobacteriaceae.
Probab=73.76 E-value=5 Score=24.66 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 032617 113 HIMHVVLFALFLFFILYMWSKM 134 (137)
Q Consensus 113 ~~~~lil~~v~vffvly~l~k~ 134 (137)
.+|++|+|++++|++=-++..+
T Consensus 4 ky~wlvvfav~~flfd~limQw 25 (53)
T PF10831_consen 4 KYWWLVVFAVFVFLFDTLIMQW 25 (53)
T ss_pred eehhHHHHHHHHHHHHHHHHHH
Confidence 4677888888888765555443
No 91
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=73.22 E-value=4.8 Score=27.93 Aligned_cols=22 Identities=23% Similarity=0.679 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 032617 114 IMHVVLFALFLFFILYMWSKMF 135 (137)
Q Consensus 114 ~~~lil~~v~vffvly~l~k~~ 135 (137)
.+..+++++++|+++|+++++.
T Consensus 16 l~~~~~~l~~~~~~l~ll~~ll 37 (108)
T PF07219_consen 16 LWVALILLLLLFVVLYLLLRLL 37 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555666665554
No 92
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=73.19 E-value=27 Score=23.89 Aligned_cols=44 Identities=11% Similarity=0.150 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 032617 52 EITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGV 95 (137)
Q Consensus 52 ~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L 95 (137)
.+|.|++.|+.|+.-...+..+++.=+.-.+.--+.-.++..+|
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~Ri 68 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRL 68 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 67888888888888777777766654444444333444443333
No 93
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=72.41 E-value=32 Score=24.50 Aligned_cols=59 Identities=10% Similarity=0.188 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617 49 LDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 49 qD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
-...+..|...|..|..+-..++...+....+=+.|++-.+.+....+.+..+|+.+-.
T Consensus 11 I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~ 69 (151)
T cd00179 11 IRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEE 69 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777777777633346666666666666666666666666544
No 94
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=72.29 E-value=47 Score=26.28 Aligned_cols=58 Identities=17% Similarity=0.278 Sum_probs=33.8
Q ss_pred hhHhhhcchhHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032617 37 EIQLRIDPVNADLDD---EITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAG 94 (137)
Q Consensus 37 ~~q~~~~~~~~eqD~---~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~ 94 (137)
+.|.+++...+|..+ ++..|...+..|+..-..+...+..|+.-+++++...+.....
T Consensus 39 ~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~ 99 (251)
T PF11932_consen 39 QSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEET 99 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555344333 3444455666666666666667777777777777666555443
No 95
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=72.28 E-value=28 Score=23.66 Aligned_cols=58 Identities=10% Similarity=0.271 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhc
Q 032617 51 DEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKH 109 (137)
Q Consensus 51 ~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~ 109 (137)
..++.-..+|..+|.-+.+.+ +|+.|..+|++...-+-.+..+|..+...|..++...
T Consensus 21 kE~~~q~~rle~~k~~~~de~-~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~l~~~ 78 (90)
T PF02970_consen 21 KEVEEQEARLEKMKAEGEDEY-DIKKQEEVLEETKMMIPDCQQRLEKAVEDLEEFLEEE 78 (90)
T ss_dssp HHHHHHHHHHHHHHHCTTSHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHC
Confidence 344555566677776666555 4999999999999999999999999999999998753
No 96
>PHA02819 hypothetical protein; Provisional
Probab=70.98 E-value=3.5 Score=27.23 Aligned_cols=12 Identities=17% Similarity=0.620 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 032617 123 FLFFILYMWSKM 134 (137)
Q Consensus 123 ~vffvly~l~k~ 134 (137)
++.+++++.+|.
T Consensus 58 ~~~~~~flYLK~ 69 (71)
T PHA02819 58 FVIIFIIFYLKV 69 (71)
T ss_pred HHHHHHHHHHHh
Confidence 333444444554
No 97
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=70.43 E-value=1.5 Score=39.60 Aligned_cols=43 Identities=28% Similarity=0.402 Sum_probs=12.7
Q ss_pred hHhhHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Q 032617 46 NADLDDEITGLRSQVKQLRN------VAQEIHSEASFQKDFLDQLQMTL 88 (137)
Q Consensus 46 ~~eqD~~Ld~L~~~V~~LK~------va~~I~~Ev~~Qn~lLD~l~~~~ 88 (137)
++|-|+-+..+...+-.|.+ --.++..|+++=++.+++|++.+
T Consensus 483 nkel~e~~~n~n~t~P~l~~l~~fN~T~LNLt~EI~~Lq~~I~~LN~tl 531 (610)
T PF01601_consen 483 NKELDEIFKNLNSTLPNLDDLDIFNQTYLNLTSEIDELQEVIDNLNNTL 531 (610)
T ss_dssp ----------S------HHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHhcCCCCCCCCchhhcccceeccHHHHHHHHHHHHHhhhhh
Confidence 44555555555555555551 22556666644444444444433
No 98
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=70.07 E-value=53 Score=26.02 Aligned_cols=12 Identities=25% Similarity=0.548 Sum_probs=5.0
Q ss_pred HHHHHHHHHhcC
Q 032617 126 FILYMWSKMFRR 137 (137)
Q Consensus 126 fvly~l~k~~~~ 137 (137)
+++++++.++||
T Consensus 251 ~~~~~~~~~~~R 262 (262)
T PF14257_consen 251 LIIGLLVRFVRR 262 (262)
T ss_pred HHHHHHHheEeC
Confidence 333444444443
No 99
>PRK11637 AmiB activator; Provisional
Probab=69.99 E-value=67 Score=27.38 Aligned_cols=37 Identities=11% Similarity=0.060 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617 71 HSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 71 ~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
..+++.-+.-|+.++..++.+...+...-.++...-+
T Consensus 88 ~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~ 124 (428)
T PRK11637 88 SRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQER 124 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555444
No 100
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=69.38 E-value=74 Score=29.31 Aligned_cols=12 Identities=8% Similarity=0.130 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHh
Q 032617 96 KNNMRRLNKSIV 107 (137)
Q Consensus 96 ~~t~~rl~~v~~ 107 (137)
............
T Consensus 316 ~~~~~~~~~~~~ 327 (968)
T TIGR02956 316 EAAVSDLLMTLS 327 (968)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 101
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=68.71 E-value=5.2 Score=30.47 Aligned_cols=6 Identities=17% Similarity=0.750 Sum_probs=2.2
Q ss_pred HHHHHH
Q 032617 125 FFILYM 130 (137)
Q Consensus 125 ffvly~ 130 (137)
|+|+||
T Consensus 41 F~iL~~ 46 (181)
T PRK13454 41 LVAIYF 46 (181)
T ss_pred HHHHHH
Confidence 333333
No 102
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=68.30 E-value=6.9 Score=28.59 Aligned_cols=19 Identities=26% Similarity=0.569 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 032617 118 VLFALFLFFILYMWSKMFR 136 (137)
Q Consensus 118 il~~v~vffvly~l~k~~~ 136 (137)
+++++++++++|++++..|
T Consensus 28 ~lll~~~~~~~~~~~r~~~ 46 (146)
T PF14316_consen 28 ALLLLLLILLLWRLWRRWR 46 (146)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344445555566555444
No 103
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=68.21 E-value=11 Score=25.01 Aligned_cols=24 Identities=13% Similarity=0.016 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHH
Q 032617 81 LDQLQMTLIKAQAGVKNNMRRLNK 104 (137)
Q Consensus 81 LD~l~~~~d~~~~~L~~t~~rl~~ 104 (137)
|..-+++|++--+-++.++..=++
T Consensus 13 mss~ddDf~~Fi~vVksVltdk~~ 36 (72)
T PF12575_consen 13 MSSSDDDFNNFINVVKSVLTDKKK 36 (72)
T ss_pred cCCCHHHHHHHHHHHHHHHcCCcc
Confidence 344467777777777776655444
No 104
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.00 E-value=60 Score=25.87 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032617 63 LRNVAQEIHSEASFQKDFLDQLQMTL 88 (137)
Q Consensus 63 LK~va~~I~~Ev~~Qn~lLD~l~~~~ 88 (137)
.++++..+.++.+.|--+-.+|++-.
T Consensus 133 ~~n~~~~n~el~~v~~im~~niedvl 158 (216)
T KOG0862|consen 133 QRNLLKLNQELQDVQRIMVENLEDVL 158 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 57788777777778877777776543
No 105
>PRK10884 SH3 domain-containing protein; Provisional
Probab=67.83 E-value=57 Score=25.55 Aligned_cols=59 Identities=17% Similarity=0.202 Sum_probs=31.2
Q ss_pred hcchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617 42 IDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 42 ~~~~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
.+.+..+.|+...+|.+++...++...+ ++++|+- |......+.+.+......+...-+
T Consensus 109 l~~~~~~~~~~~~~l~~~~~~~~~~~~~----L~~~n~~---L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 109 LNNIDNTWNQRTAEMQQKVAQSDSVING----LKEENQK---LKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666677777777776555444 5555532 244444455555444444444443
No 106
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.60 E-value=61 Score=25.78 Aligned_cols=78 Identities=15% Similarity=0.196 Sum_probs=44.4
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCchhHHHHHHHHHHH
Q 032617 46 NADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLFALFLF 125 (137)
Q Consensus 46 ~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~~~~~~~lil~~v~vf 125 (137)
+..-|+-|..=+.....|+..-..+.. -|.+++|-+ ++-+.=+.|++-+++=..+...-.||-+|+.+|++|
T Consensus 135 ~~~lDd~l~~G~~ile~l~~Q~~~L~~---~~~ki~~~~-----ntLGlSn~ti~lIeRR~~~Dk~iF~~G~i~~~v~~y 206 (213)
T KOG3251|consen 135 HNMLDDLLESGSAILENLVEQRLTLKG---TQKKILDIL-----NTLGLSNQTIRLIERRVREDKIIFYGGVILTLVIMY 206 (213)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH-----HhcCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 444455555445555555555555543 455666544 344555666777766555566667776666666665
Q ss_pred HHHHHH
Q 032617 126 FILYMW 131 (137)
Q Consensus 126 fvly~l 131 (137)
++.|||
T Consensus 207 l~~~wl 212 (213)
T KOG3251|consen 207 LFYRWL 212 (213)
T ss_pred HHHHHh
Confidence 555554
No 107
>PRK09546 zntB zinc transporter; Reviewed
Probab=65.38 E-value=74 Score=25.96 Aligned_cols=21 Identities=19% Similarity=0.192 Sum_probs=10.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 032617 113 HIMHVVLFALFLFFILYMWSK 133 (137)
Q Consensus 113 ~~~~lil~~v~vffvly~l~k 133 (137)
++++++++.+++.+++|+++|
T Consensus 299 gy~~~l~im~~i~~~~~~~fk 319 (324)
T PRK09546 299 GFSIFCLLLVVLIGGVAWWLK 319 (324)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555554
No 108
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=65.35 E-value=7.5 Score=30.35 Aligned_cols=7 Identities=29% Similarity=0.989 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 032617 125 FFILYMW 131 (137)
Q Consensus 125 ffvly~l 131 (137)
|+|+|++
T Consensus 63 FliL~~l 69 (204)
T PRK09174 63 FGLFYLF 69 (204)
T ss_pred HHHHHHH
Confidence 3333333
No 109
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=65.24 E-value=7.9 Score=29.46 Aligned_cols=21 Identities=10% Similarity=0.063 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 032617 113 HIMHVVLFALFLFFILYMWSK 133 (137)
Q Consensus 113 ~~~~lil~~v~vffvly~l~k 133 (137)
..|.+|.|++++|++-+++|+
T Consensus 34 ~~~~lI~F~iL~~ll~k~l~~ 54 (181)
T PRK13454 34 IFWLLVTLVAIYFVLTRVALP 54 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 346667777777777777766
No 110
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=64.72 E-value=49 Score=26.52 Aligned_cols=24 Identities=8% Similarity=0.209 Sum_probs=12.6
Q ss_pred chhHHHHHH-HHHHHHHHHHHHHHh
Q 032617 112 NHIMHVVLF-ALFLFFILYMWSKMF 135 (137)
Q Consensus 112 ~~~~~lil~-~v~vffvly~l~k~~ 135 (137)
..+|.++.+ .++++-+-|+-+|-.
T Consensus 198 sl~Wv~l~iG~iIi~tLtYvGwRKY 222 (232)
T PF09577_consen 198 SLIWVMLSIGGIIIATLTYVGWRKY 222 (232)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455554433 455555556666543
No 111
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=64.66 E-value=58 Score=27.99 Aligned_cols=8 Identities=50% Similarity=1.024 Sum_probs=4.1
Q ss_pred CCCCCCCC
Q 032617 11 GGPFYGGA 18 (137)
Q Consensus 11 ~~~~~~~~ 18 (137)
+-++||+.
T Consensus 78 gvG~yGN~ 85 (406)
T PF04906_consen 78 GVGFYGNS 85 (406)
T ss_pred Hcccccch
Confidence 34555554
No 112
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=64.51 E-value=40 Score=22.51 Aligned_cols=57 Identities=12% Similarity=0.180 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617 51 DEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK 108 (137)
Q Consensus 51 ~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~ 108 (137)
..|-.|...|+.|+.+...||.. ++-.++-+.+......+...++.+...|+++...
T Consensus 3 ~~l~~in~~v~~l~k~~~~lGt~-~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~ 59 (102)
T PF14523_consen 3 SNLFKINQNVSQLEKLVNQLGTP-RDSQELREKIHQLIQKTNQLIKEISELLKKLNSL 59 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-SS-S--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHhCCc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34667888888888888888865 4444688888888888888888888888777664
No 113
>PF05440 MtrB: Tetrahydromethanopterin S-methyltransferase subunit B; InterPro: IPR008690 The N5-methyltetrahydromethanopterin: coenzyme M (2.1.1.86 from EC) of Methanosarcina mazei Go1 is a membrane-associated, corrinoid-containing protein that uses a transmethylation reaction to drive an energy-conserving sodium ion pump [].; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=64.20 E-value=3 Score=29.20 Aligned_cols=59 Identities=10% Similarity=0.029 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHH
Q 032617 70 IHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLFALFLFFIL 128 (137)
Q Consensus 70 I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~~~~~~~lil~~v~vffvl 128 (137)
|.+|++.=.+.-|++.+++|-...-|+.=-+|=+.....+....+||-+.+.++++.++
T Consensus 35 i~eqi~kLe~~addl~nsLdP~~~~l~S~PgREg~~~~AG~~tn~fyGf~igL~i~~lv 93 (97)
T PF05440_consen 35 INEQIDKLEKAADDLVNSLDPRTPPLNSFPGREGTYYIAGIFTNMFYGFIIGLVIAGLV 93 (97)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCccccCCCCccceeehhhhhhHHHHHHHHHHHHHHH
Confidence 44444444555566666666665555544444333332222345666555555544333
No 114
>COG3905 Predicted transcriptional regulator [Transcription]
Probab=64.01 E-value=29 Score=23.65 Aligned_cols=61 Identities=16% Similarity=0.133 Sum_probs=50.6
Q ss_pred hHhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHH
Q 032617 46 NADLDDEITGLRSQVKQLRN--VAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRR-LNKSI 106 (137)
Q Consensus 46 ~~eqD~~Ld~L~~~V~~LK~--va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~r-l~~v~ 106 (137)
.++-+..||.|++...+-|+ +...|-++++.|.--++.+...+..+..+.--+... ++.+.
T Consensus 10 ~del~~rLd~lAe~~~rsrs~i~~~Aia~~v~re~~q~a~i~aGla~a~aGr~v~heEv~a~i~ 73 (83)
T COG3905 10 DDELKRRLDELAEATDRSRSYIAEQAIADFVDREEWQLAAIKAGLADAEAGRFVTHEEVIAWID 73 (83)
T ss_pred CHHHHHHHHHHHHHhccChhhhHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCcCCHHHHHHHHH
Confidence 36788999999999999988 778899999999999999999999888776666655 34433
No 115
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=63.77 E-value=7.5 Score=29.43 Aligned_cols=19 Identities=21% Similarity=0.483 Sum_probs=12.4
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 032617 113 HIMHVVLFALFLFFILYMW 131 (137)
Q Consensus 113 ~~~~lil~~v~vffvly~l 131 (137)
.+|.+|.|++++|++.|+.
T Consensus 29 ~~~~~inflil~~iL~~f~ 47 (184)
T PRK13455 29 DFVVTLAFLLFIGILVYFK 47 (184)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4455677777777776664
No 116
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=63.45 E-value=11 Score=24.35 Aligned_cols=10 Identities=20% Similarity=0.567 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 032617 125 FFILYMWSKM 134 (137)
Q Consensus 125 ffvly~l~k~ 134 (137)
.++++++-++
T Consensus 23 ~~~i~l~~~~ 32 (79)
T PF04277_consen 23 ILVISLMSKL 32 (79)
T ss_pred HHHHHHHHHH
Confidence 3333443333
No 117
>TIGR01195 oadG_fam sodium pump decarboxylases, gamma subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.
Probab=63.31 E-value=12 Score=25.05 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 032617 115 MHVVLFALFLFFILYMWSKMF 135 (137)
Q Consensus 115 ~~lil~~v~vffvly~l~k~~ 135 (137)
..+++|+++++++++++.|+.
T Consensus 16 ~~VF~fL~lLi~~i~~~~~~~ 36 (82)
T TIGR01195 16 GIVFLFLSLLIYAVRGMGKVV 36 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555543
No 118
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=63.29 E-value=63 Score=27.32 Aligned_cols=51 Identities=27% Similarity=0.263 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617 56 LRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 56 L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
|=.-|.|||.+. .||.++.+=...|..|+.........|+.--.-|.+|-.
T Consensus 314 lP~lv~RL~tL~-~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~ 364 (388)
T PF04912_consen 314 LPSLVERLKTLK-SLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEE 364 (388)
T ss_pred hhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555544 678888877777777777776666666665555555544
No 119
>PRK15396 murein lipoprotein; Provisional
Probab=63.01 E-value=43 Score=22.42 Aligned_cols=49 Identities=16% Similarity=0.323 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617 52 EITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 52 ~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
.+|.|++.|+.|+.-...+..+ .+++..+...+...-.++..||..+..
T Consensus 26 kvd~LssqV~~L~~kvdql~~d-------v~~~~~~~~~a~~eA~raN~RlDn~~~ 74 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSND-------VNAMRSDVQAAKDDAARANQRLDNQAT 74 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555444332233222 233344444455566666666666554
No 120
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=62.91 E-value=87 Score=27.39 Aligned_cols=61 Identities=11% Similarity=0.249 Sum_probs=38.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617 47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
.+.+..+..+.+++...+.-......++.+++.-++.++...-.+...++...+++.....
T Consensus 41 ~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~ 101 (420)
T COG4942 41 KQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNA 101 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHH
Confidence 3456666666666666666666667777777666666666666666666555555544433
No 121
>PHA03395 p10 fibrous body protein; Provisional
Probab=62.70 E-value=36 Score=23.34 Aligned_cols=55 Identities=20% Similarity=0.268 Sum_probs=38.6
Q ss_pred HhhhcchhHhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 032617 39 QLRIDPVNADLDDEITGLRSQVKQLRNVA---QEIHSEASFQKDFLDQLQMTLIKAQAGV 95 (137)
Q Consensus 39 q~~~~~~~~eqD~~Ld~L~~~V~~LK~va---~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L 95 (137)
+++.+. .+=|+.+|+|...|..++.-- ..|.+-++.|..-|+++++.++.-.+-|
T Consensus 8 ~Ir~dI--kavd~KVdalQ~~V~~l~~nlpdv~~l~~kLdaq~~~Ltti~tkv~~I~diL 65 (87)
T PHA03395 8 LIRQDI--KAVSDKVDALQAAVDDVRANLPDVTEINEKLDAQSASLDTISSAVDNITDIL 65 (87)
T ss_pred HHHHHH--HHHhhHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHHHHHHHHHHHHHHHcc
Confidence 444443 577889999999998888532 3677778888888877777776654443
No 122
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=62.62 E-value=31 Score=23.54 Aligned_cols=19 Identities=11% Similarity=0.003 Sum_probs=7.7
Q ss_pred HHHHhhhhHHHHHHHHHHH
Q 032617 88 LIKAQAGVKNNMRRLNKSI 106 (137)
Q Consensus 88 ~d~~~~~L~~t~~rl~~v~ 106 (137)
.|..+.-+.+...=++.++
T Consensus 19 ~DQL~qlVsrN~sfirdFv 37 (84)
T PF06143_consen 19 YDQLEQLVSRNRSFIRDFV 37 (84)
T ss_pred HHHHHHHHHhChHHHHHHH
Confidence 3444444444443343333
No 123
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=62.17 E-value=8.6 Score=31.01 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=14.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHh
Q 032617 111 SNHIMHVVLFALFLFFILYMWSKMF 135 (137)
Q Consensus 111 ~~~~~~lil~~v~vffvly~l~k~~ 135 (137)
.++|...+++++++++++|+++-.+
T Consensus 199 ~~g~f~wl~i~~~l~~~~Y~i~g~~ 223 (268)
T PF09451_consen 199 GWGFFTWLFIILFLFLAAYLIFGSW 223 (268)
T ss_pred cccHHHHHHHHHHHHHHHHhhhhhh
Confidence 3444444455556666788877554
No 124
>PF07097 DUF1359: Protein of unknown function (DUF1359); InterPro: IPR010772 This family consists of several hypothetical bacterial and phage proteins of around 100 residues in length. Members of this family seem to be found exclusively in Lactococcus lactis and the bacteriophages that infect this species. The function of this family is unknown.
Probab=61.45 E-value=24 Score=24.44 Aligned_cols=38 Identities=21% Similarity=0.450 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032617 50 DDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMT 87 (137)
Q Consensus 50 D~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~ 87 (137)
-++++....++.|||++-++|.++-+.-.-++|++.++
T Consensus 8 ~~~I~~~q~K~~RLk~~IH~vr~Q~~~~~i~~D~~k~~ 45 (102)
T PF07097_consen 8 SEQIAKIQTKICRLKNVIHAVRRQTELVKIVLDDLKNN 45 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcC
Confidence 45678888999999999988887766666677777654
No 125
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.36 E-value=58 Score=25.86 Aligned_cols=13 Identities=15% Similarity=0.532 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q 032617 53 ITGLRSQVKQLRN 65 (137)
Q Consensus 53 Ld~L~~~V~~LK~ 65 (137)
|..+...|+.+|.
T Consensus 127 lskvkaqv~evk~ 139 (217)
T KOG0859|consen 127 LAKVKAQVTEVKG 139 (217)
T ss_pred HHHHHHHHHHHHH
Confidence 3334445555555
No 126
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=61.35 E-value=6 Score=26.27 Aligned_cols=6 Identities=17% Similarity=0.656 Sum_probs=2.3
Q ss_pred HHHHHH
Q 032617 128 LYMWSK 133 (137)
Q Consensus 128 ly~l~k 133 (137)
+++.+|
T Consensus 65 ~flYLK 70 (72)
T PF12575_consen 65 TFLYLK 70 (72)
T ss_pred HHHHhc
Confidence 344333
No 127
>PHA03386 P10 fibrous body protein; Provisional
Probab=60.84 E-value=36 Score=23.70 Aligned_cols=46 Identities=15% Similarity=0.198 Sum_probs=33.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 032617 47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVK 96 (137)
Q Consensus 47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~ 96 (137)
.+-|..+++|...|..++.- .+-++.|..-|++++..+++-++-|.
T Consensus 15 kavd~KVdaLQ~qV~dv~~n----~~~LDa~~~qL~~l~tkV~~Iq~iLn 60 (94)
T PHA03386 15 QEVDTKVDALQTQLNGLEED----SQPLDGLPAQLTELDTKVSDIQSILT 60 (94)
T ss_pred HHHhhHHHHHHHHHHHHHhc----chhhhhHHHHHHHHHHHHHHHHHhcC
Confidence 57788999999999888754 34467777777777777766655543
No 128
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=60.82 E-value=40 Score=21.28 Aligned_cols=50 Identities=20% Similarity=0.296 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617 51 DEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 51 ~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
..+|.|++-|+.|+.--..|.+|+. .+..++..+...-.++..||.....
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~-------~lr~~v~~ak~EAaRAN~RlDN~a~ 52 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVN-------ALRADVQAAKEEAARANQRLDNIAQ 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 4678888888877765555555554 3344555566666666666666554
No 129
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=60.76 E-value=12 Score=25.73 Aligned_cols=20 Identities=35% Similarity=0.635 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 032617 113 HIMHVVLFALFLFFILYMWS 132 (137)
Q Consensus 113 ~~~~lil~~v~vffvly~l~ 132 (137)
.|..+..|++++|||+.++.
T Consensus 42 FWv~LA~FV~~lF~iL~~ms 61 (90)
T PF15183_consen 42 FWVSLAAFVVFLFLILLYMS 61 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34455667777777766654
No 130
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=60.69 E-value=4.1 Score=33.81 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Q 032617 113 HIMHVVLFALFLFFILYMWSKMF 135 (137)
Q Consensus 113 ~~~~lil~~v~vffvly~l~k~~ 135 (137)
.++++|.+++++.||.|+++|+.
T Consensus 279 piil~IG~vl~i~~Ig~~ifK~~ 301 (305)
T PF04639_consen 279 PIILIIGGVLLIVFIGYFIFKRL 301 (305)
T ss_pred HHHHHHHHHHHHHHhhheeeEee
Confidence 45566777788888888888864
No 131
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=60.65 E-value=43 Score=25.02 Aligned_cols=30 Identities=13% Similarity=0.274 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHhhc
Q 032617 80 FLDQLQMTLIKAQAGVKNNMRRLNKSIVKH 109 (137)
Q Consensus 80 lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~ 109 (137)
-++++...+.+-.-.+..+.++++++.+..
T Consensus 69 ~v~~l~~~~~~~~~~~~ea~~~L~~I~~~~ 98 (193)
T PF06738_consen 69 AVNRLSRRIVAGQLSLEEAIERLDEIDREP 98 (193)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhhCC
Confidence 345555555555666667777777777754
No 132
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=60.40 E-value=2.8 Score=27.23 Aligned_cols=20 Identities=25% Similarity=0.474 Sum_probs=0.5
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 032617 117 VVLFALFLFFILYMWSKMFR 136 (137)
Q Consensus 117 lil~~v~vffvly~l~k~~~ 136 (137)
++.+++.+++|+++++|+.|
T Consensus 19 Vvgll~ailLIlf~iyR~rk 38 (64)
T PF01034_consen 19 VVGLLFAILLILFLIYRMRK 38 (64)
T ss_dssp ------------------S-
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34455556667777777644
No 133
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=60.05 E-value=74 Score=24.17 Aligned_cols=61 Identities=13% Similarity=0.207 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhc
Q 032617 49 LDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKH 109 (137)
Q Consensus 49 qD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~ 109 (137)
+++..+.+.+.+..|+.-...+.++++.-...|.++.+.+..-...|+.-..++..++...
T Consensus 101 d~~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~ 161 (184)
T PF05791_consen 101 DQKDKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDVDELQSILAGE 161 (184)
T ss_dssp HHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcc
Confidence 4566778888999999999999999999999999999999999999999999998888753
No 134
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=60.05 E-value=12 Score=25.83 Aligned_cols=21 Identities=10% Similarity=0.461 Sum_probs=10.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 032617 113 HIMHVVLFALFLFFILYMWSK 133 (137)
Q Consensus 113 ~~~~lil~~v~vffvly~l~k 133 (137)
.+|++++..+++.+|+.|++.
T Consensus 34 gm~~lvI~~iFil~VilwfvC 54 (94)
T PF05393_consen 34 GMWFLVICGIFILLVILWFVC 54 (94)
T ss_pred chhHHHHHHHHHHHHHHHHHH
Confidence 455555554544444444443
No 135
>cd06845 Bcl-2_like Apoptosis regulator proteins of the Bcl-2 family, named after B-cell lymphoma 2. This alignment model spans what have been described as Bcl-2 homology regions BH1, BH2, BH3, and BH4. Many members of this family have an additional C-terminal transmembrane segment. Some homologous proteins, which are not included in this model, may miss either the BH4 (Bax, Bak) or the BH2 (Bcl-X(S)) region, and some appear to only share the BH3 region (Bik, Bim, Bad, Bid, Egl-1). This family is involved in the regulation of the outer mitochondrial membrane's permeability and in promoting or preventing the release of apoptogenic factors, which in turn may trigger apoptosis by activating caspases. Bcl-2 and the closely related Bcl-X(L) are anti-apoptotic key regulators of programmed cell death. They are assumed to function via heterodimeric protein-protein interactions, binding pro-apoptotic proteins such as Bad (BCL2-antagonist of cell death), Bid, and Bim, by specifically interacting
Probab=59.13 E-value=64 Score=23.16 Aligned_cols=70 Identities=16% Similarity=0.156 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHhhcCCchhHHHHHHHHHHHHHHHH
Q 032617 58 SQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRL-NKSIVKHGSNHIMHVVLFALFLFFILYM 130 (137)
Q Consensus 58 ~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl-~~v~~~~~~~~~~~lil~~v~vffvly~ 130 (137)
.....|+.++.+|.. .+...++++-+.++.+......+...+ +.+++.++.++==++.+|++...+..++
T Consensus 34 ~~~~~Lr~~~dele~---~~~~~f~~~~~~l~~~~~~~~~~f~~v~~~lf~dg~inWGRIval~~f~~~la~~~ 104 (144)
T cd06845 34 EVAETLRRVGDELEE---KHRRLFENMCRQLNISPDNAYEVFQEVARELFEDGGINWGRIVALFAFGGRLAVKC 104 (144)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHhCCCcchHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHH
Confidence 344455555544433 344567777776643333333333333 3344432222222344444444444443
No 136
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=59.09 E-value=54 Score=22.25 Aligned_cols=52 Identities=8% Similarity=0.153 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 032617 55 GLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSI 106 (137)
Q Consensus 55 ~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~ 106 (137)
.+...|+.|..-=..+-.|++....-.+.++..=..+..+|+.++..+.-|+
T Consensus 36 ~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir~vL 87 (89)
T PF13747_consen 36 ELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIRAVL 87 (89)
T ss_pred hHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333334444444444445555555555555555555555444
No 137
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=58.97 E-value=83 Score=24.40 Aligned_cols=49 Identities=12% Similarity=0.142 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 032617 51 DEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKS 105 (137)
Q Consensus 51 ~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v 105 (137)
+.++.+...+.++.+.+..+.+.++.-. +.-+...+.+++++++++.-+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~------~~~~~~~~~~~n~~m~~LT~~ 240 (292)
T PF01544_consen 192 EYLRDLLDRIERLLERAESLRERLESLQ------DLYQSKLSNRQNRVMKVLTIV 240 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 3355555555554444444443333221 122334555677777776543
No 138
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=58.86 E-value=96 Score=25.07 Aligned_cols=21 Identities=5% Similarity=0.181 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 032617 115 MHVVLFALFLFFILYMWSKMF 135 (137)
Q Consensus 115 ~~lil~~v~vffvly~l~k~~ 135 (137)
|+.+.++|++||.+..++-+.
T Consensus 217 wf~~~miI~v~~sFVsMilii 237 (244)
T KOG2678|consen 217 WFYITMIIFVILSFVSMILII 237 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666655443
No 139
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=58.83 E-value=85 Score=24.46 Aligned_cols=61 Identities=18% Similarity=0.229 Sum_probs=47.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617 47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKD--FLDQLQMTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~--lLD~l~~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
..-|..+..|..+++.|++-.-.+..|+++=.+ .+..|..........+.+-..||+.+-.
T Consensus 82 ~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 82 QVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777788999999999999999999996555 4567777777777777777777766543
No 140
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=58.57 E-value=96 Score=25.01 Aligned_cols=58 Identities=17% Similarity=0.261 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCchhHHHHHHHHH-HHHHHHHHHHHh
Q 032617 77 QKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLFALF-LFFILYMWSKMF 135 (137)
Q Consensus 77 Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~~~~~~~lil~~v~-vffvly~l~k~~ 135 (137)
+.....+-+... .....+-.=..-|.++.+.+..-+++++++++++ ++=++=++.|++
T Consensus 227 ~~~~~a~~~~~~-~~~~G~l~R~~Al~~L~~~~~~~~~~~~~i~llfi~iel~Pv~~Kl~ 285 (301)
T PF14362_consen 227 RQAKVAEFQAII-SANDGFLARLEALWELTKEDPSALLASLFIFLLFIAIELLPVLFKLL 285 (301)
T ss_pred HHHHHHHHhHhh-ccCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444433333 3333444444556666665433333333333322 223344555554
No 141
>PF12669 P12: Virus attachment protein p12 family
Probab=58.37 E-value=15 Score=23.05 Aligned_cols=16 Identities=19% Similarity=0.422 Sum_probs=8.8
Q ss_pred HHHHHHHHHH-HHHHhc
Q 032617 121 ALFLFFILYM-WSKMFR 136 (137)
Q Consensus 121 ~v~vffvly~-l~k~~~ 136 (137)
++++.+++|+ +.+++|
T Consensus 6 ~Ii~~~~~~v~~r~~~k 22 (58)
T PF12669_consen 6 IIILAAVAYVAIRKFIK 22 (58)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 3344444455 477776
No 142
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=58.30 E-value=12 Score=31.99 Aligned_cols=20 Identities=20% Similarity=0.554 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 032617 117 VVLFALFLFFILYMWSKMFR 136 (137)
Q Consensus 117 lil~~v~vffvly~l~k~~~ 136 (137)
.|+++|++++|+|+++|-.|
T Consensus 318 AIvvIVLIMvIIYLILRYRR 337 (353)
T TIGR01477 318 AILIIVLIMVIIYLILRYRR 337 (353)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 45555667788899998665
No 143
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=58.02 E-value=44 Score=22.76 Aligned_cols=29 Identities=21% Similarity=0.200 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617 79 DFLDQLQMTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 79 ~lLD~l~~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
..||.|+.-+|....+-.....++..++.
T Consensus 33 s~LD~Lns~LD~LE~rnD~l~~~L~~LLe 61 (83)
T PF03670_consen 33 SMLDQLNSCLDHLEQRNDHLHAQLQELLE 61 (83)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 144
>PTZ00046 rifin; Provisional
Probab=57.87 E-value=12 Score=31.98 Aligned_cols=20 Identities=15% Similarity=0.502 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 032617 117 VVLFALFLFFILYMWSKMFR 136 (137)
Q Consensus 117 lil~~v~vffvly~l~k~~~ 136 (137)
.|+++|++.+|+|+++|-.|
T Consensus 323 AIvVIVLIMvIIYLILRYRR 342 (358)
T PTZ00046 323 AIVVIVLIMVIIYLILRYRR 342 (358)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 45556667788899998665
No 145
>PHA03164 hypothetical protein; Provisional
Probab=57.76 E-value=10 Score=25.60 Aligned_cols=17 Identities=29% Similarity=0.770 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032617 115 MHVVLFALFLFFILYMW 131 (137)
Q Consensus 115 ~~lil~~v~vffvly~l 131 (137)
|..|..+++++||+|++
T Consensus 65 gLaIamILfiifvlyvF 81 (88)
T PHA03164 65 GLAIAMILFIIFVLYVF 81 (88)
T ss_pred HHHHHHHHHHHHHHHhe
Confidence 33444445555555543
No 146
>COG4420 Predicted membrane protein [Function unknown]
Probab=57.62 E-value=43 Score=26.18 Aligned_cols=36 Identities=0% Similarity=-0.194 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617 72 SEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 72 ~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
+.+...+.+.-+....+..-..-..++..++.++..
T Consensus 21 ~~l~~~~~i~~~~~e~~~~~~t~gdR~ad~ia~f~G 56 (191)
T COG4420 21 ELLRENTPISSDRREEFEDGETFGDRVADKIARFGG 56 (191)
T ss_pred HHHHhcchhhcchHHHHhcccchhhhHHHHHHHHcC
Confidence 333333334444444444444444455556666655
No 147
>COG4949 Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]
Probab=57.01 E-value=1.2e+02 Score=25.83 Aligned_cols=55 Identities=13% Similarity=0.237 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhHHHHHHHH
Q 032617 48 DLDDEITGLRSQVKQLRN-VAQEIHSEASFQKD-FLDQLQMTLIKAQAGVKNNMRRLN 103 (137)
Q Consensus 48 eqD~~Ld~L~~~V~~LK~-va~~I~~Ev~~Qn~-lLD~l~~~~d~~~~~L~~t~~rl~ 103 (137)
--|++.+.|+-++.+--. +-.-|+=|++.||. +|+.|+... +.+.+|..+..-+.
T Consensus 309 sveeRqanLSrklaRat~LlRtwidve~erQN~~lL~~Md~ra-~lQlrLQqtVEGLS 365 (424)
T COG4949 309 SVEERQANLSRKLARATALLRTWIDVELERQNQELLNSMDARA-QLQLRLQQTVEGLS 365 (424)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhhHHH-HHHHHHHHHhccce
Confidence 357888889988887666 55678899999998 777776543 45666666655443
No 148
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.92 E-value=1.3e+02 Score=25.85 Aligned_cols=61 Identities=11% Similarity=0.209 Sum_probs=28.1
Q ss_pred cchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 032617 43 DPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLN 103 (137)
Q Consensus 43 ~~~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~ 103 (137)
+++...-+++++.+..-...||.-...|..-..+=..+...|+..+.+.+....--.++..
T Consensus 217 eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~ 277 (365)
T KOG2391|consen 217 EKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVR 277 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3443445566666655555555554444443333333444444444444433333333333
No 149
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=56.82 E-value=92 Score=24.68 Aligned_cols=27 Identities=7% Similarity=0.198 Sum_probs=17.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhc
Q 032617 110 GSNHIMHVVLFALFLFFILYMWSKMFR 136 (137)
Q Consensus 110 ~~~~~~~lil~~v~vffvly~l~k~~~ 136 (137)
+.++.|.++++=+++|+++.+++-=||
T Consensus 151 STwgT~~lmgvNvllFl~~~~~~EPwk 177 (207)
T PF05546_consen 151 STWGTWGLMGVNVLLFLVAQLLVEPWK 177 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 345666666666777777777654343
No 150
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=56.43 E-value=1.1e+02 Score=25.05 Aligned_cols=63 Identities=8% Similarity=0.094 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCchhH
Q 032617 49 LDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIM 115 (137)
Q Consensus 49 qD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~~~~~~ 115 (137)
-++.|+.+...|..+..-...=...+.++-+-|+..++.| ..|.....+|.++++.+..++.|
T Consensus 11 l~e~l~~~~~~l~~~~~~~~~~~~~L~~~l~~l~~~~~~~----~~l~~~~~~L~~aL~~~k~rG~w 73 (304)
T PF02646_consen 11 LKEQLEKFEKRLEESFEQRSEEFGSLKEQLKQLSEANGEI----QQLSQEASNLTSALKNSKTRGNW 73 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHHhCCCchhhH
Confidence 3555555555555444433322233444433344444333 56666777777777754444444
No 151
>PRK00708 sec-independent translocase; Provisional
Probab=56.15 E-value=1e+02 Score=24.47 Aligned_cols=40 Identities=18% Similarity=0.222 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q 032617 52 EITGLRSQVKQLRNVAQEIHSEASFQKD--FLDQLQMTLIKA 91 (137)
Q Consensus 52 ~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~--lLD~l~~~~d~~ 91 (137)
.+-.++..|..+|.++.+..+++++... =||++...+...
T Consensus 28 ~~R~lGk~v~k~R~~a~e~r~~~~e~~~~~eldd~~k~~~~~ 69 (209)
T PRK00708 28 MLRAFGKMTARMRKMAGEFRRQFDEALREAELDDVRQTISDA 69 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 4556778888888888888888876554 256665554433
No 152
>PHA02844 putative transmembrane protein; Provisional
Probab=56.01 E-value=22 Score=23.78 Aligned_cols=18 Identities=28% Similarity=0.691 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 032617 120 FALFLFFILYMWSKMFRR 137 (137)
Q Consensus 120 ~~v~vffvly~l~k~~~~ 137 (137)
+++++.+++++.+|..||
T Consensus 57 ~v~~~~~~~flYLK~~~r 74 (75)
T PHA02844 57 FVVFATFLTFLYLKAVPR 74 (75)
T ss_pred HHHHHHHHHHHHHheecC
Confidence 334444555666666553
No 153
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=55.43 E-value=8.3 Score=26.77 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=7.5
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 032617 114 IMHVVLFALFLFFILYMWS 132 (137)
Q Consensus 114 ~~~lil~~v~vffvly~l~ 132 (137)
+|..++.++++|+++|.++
T Consensus 64 ili~lls~v~IlVily~Iy 82 (101)
T PF06024_consen 64 ILISLLSFVCILVILYAIY 82 (101)
T ss_pred hHHHHHHHHHHHHHHhhhe
Confidence 3333333344444444443
No 154
>PRK01770 sec-independent translocase; Provisional
Probab=55.06 E-value=95 Score=23.84 Aligned_cols=38 Identities=24% Similarity=0.385 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032617 52 EITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIK 90 (137)
Q Consensus 52 ~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~ 90 (137)
.+-.++..++.+|.++.++.+|+...-+ ++++...+.+
T Consensus 28 ~~r~lg~~i~~~R~~~~~~k~e~~~E~~-~~El~~~l~~ 65 (171)
T PRK01770 28 AVKTVAGWIRALRSLATTVQNELTQELK-LQELQDSLKK 65 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHH
Confidence 4556888999999999999998887753 4555554444
No 155
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=54.91 E-value=61 Score=24.23 Aligned_cols=60 Identities=12% Similarity=0.193 Sum_probs=28.1
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHH
Q 032617 61 KQLRNVAQEIH-SEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLFALFLFFILY 129 (137)
Q Consensus 61 ~~LK~va~~I~-~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~~~~~~~lil~~v~vffvly 129 (137)
.-|++++..+| ...+.|.+.|+-....++.. ....+.-.++ ...+|....+++.+|+|+.
T Consensus 108 e~L~~lg~~LG~~D~~~Q~k~i~l~~~~L~~~-------~~~a~~~~~~--~~Klyr~LGvl~G~~lvIl 168 (170)
T PF09548_consen 108 EILLELGKSLGYSDREMQEKHIELYLEQLEQQ-------LEEAREEAKK--KGKLYRSLGVLGGLFLVIL 168 (170)
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHh--cccHHHHHHHHHHHHHHHH
Confidence 34455555553 34555655555444444333 3333333332 3444545555555555544
No 156
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=54.79 E-value=13 Score=28.92 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 032617 113 HIMHVVLFALFLFFILYMWSK 133 (137)
Q Consensus 113 ~~~~lil~~v~vffvly~l~k 133 (137)
.+|.+|.|+|++||+-.++|+
T Consensus 56 l~w~~I~FliL~~lL~k~~~~ 76 (204)
T PRK09174 56 LLWLAITFGLFYLFMSRVILP 76 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777676664
No 157
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=54.68 E-value=60 Score=21.44 Aligned_cols=69 Identities=9% Similarity=0.205 Sum_probs=40.2
Q ss_pred hhhHhhhcchhHhhHHHHHHHHHHHHHHHHHHH--HHH---HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 032617 36 DEIQLRIDPVNADLDDEITGLRSQVKQLRNVAQ--EIH---SEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKS 105 (137)
Q Consensus 36 ~~~q~~~~~~~~eqD~~Ld~L~~~V~~LK~va~--~I~---~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v 105 (137)
+.++.+...+...|+.-++.|..-...|+.+.. .+. +.+. ...-|.++-..|.....++.+..+|+.++
T Consensus 17 ~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~-y~~KL~~ikkrm~~l~~~l~~lk~R~~~L 90 (92)
T PF14712_consen 17 DRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDP-YVKKLVNIKKRMSNLHERLQKLKKRADKL 90 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555555545555555555444444444333 222 2333 55667778888888888888888877765
No 158
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=54.56 E-value=14 Score=23.45 Aligned_cols=18 Identities=22% Similarity=0.510 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032617 115 MHVVLFALFLFFILYMWS 132 (137)
Q Consensus 115 ~~lil~~v~vffvly~l~ 132 (137)
..+|+|+.++||.+|.+-
T Consensus 16 ~lLiliis~~f~lI~~l~ 33 (61)
T PF06692_consen 16 PLLILIISFVFFLITSLG 33 (61)
T ss_pred HHHHHHHHHHHHHHhhhc
Confidence 456777777777777653
No 159
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=54.42 E-value=64 Score=21.73 Aligned_cols=60 Identities=13% Similarity=0.223 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617 48 DLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 48 eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
+-...+..|...|..|+.+-..+....+.-..+=++|+...+.+....+.+..+|+.+-+
T Consensus 12 ~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~ 71 (117)
T smart00503 12 EIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEK 71 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335666677777777777766776555422234345555555555555555555555443
No 160
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=54.32 E-value=59 Score=25.59 Aligned_cols=62 Identities=11% Similarity=0.232 Sum_probs=53.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhc
Q 032617 48 DLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKH 109 (137)
Q Consensus 48 eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~ 109 (137)
+-.+.+..+...+.....-......|+..-+.-+..+++.++++..+|..+..|+..+-+..
T Consensus 12 ~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~ 73 (237)
T PF00261_consen 12 EAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRA 73 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 44666777777777777788899999999999999999999999999999999998887753
No 161
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=54.09 E-value=15 Score=30.90 Aligned_cols=20 Identities=10% Similarity=0.296 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032617 115 MHVVLFALFLFFILYMWSKM 134 (137)
Q Consensus 115 ~~lil~~v~vffvly~l~k~ 134 (137)
+.++++++++|+++|+++++
T Consensus 42 ~~~~~~~~~~~~~~~~~~~l 61 (409)
T TIGR00540 42 TGLAIFFIIALAIIFAFEWG 61 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444544444443
No 162
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=54.07 E-value=19 Score=26.88 Aligned_cols=31 Identities=26% Similarity=0.340 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617 78 KDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK 108 (137)
Q Consensus 78 n~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~ 108 (137)
|+-+|.++.++++..+.+.....+++..+..
T Consensus 72 ~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~ 102 (161)
T PF04420_consen 72 NRKLDKLEEELEKLNKSLSSEKSSFDKSLSK 102 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777777776664
No 163
>PRK01919 tatB sec-independent translocase; Provisional
Probab=53.87 E-value=99 Score=23.74 Aligned_cols=28 Identities=7% Similarity=0.070 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032617 52 EITGLRSQVKQLRNVAQEIHSEASFQKD 79 (137)
Q Consensus 52 ~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~ 79 (137)
-.-.++..+..+|....++.+|++++.+
T Consensus 28 ~aRtlGk~i~k~Rr~~~d~K~ev~~E~e 55 (169)
T PRK01919 28 VARTAGALFGRAQRYINDVKAEVSREIE 55 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456777788888888888888877653
No 164
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=53.79 E-value=22 Score=21.89 Aligned_cols=20 Identities=10% Similarity=0.227 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 032617 113 HIMHVVLFALFLFFILYMWS 132 (137)
Q Consensus 113 ~~~~lil~~v~vffvly~l~ 132 (137)
.+|..++++.++|-++|+++
T Consensus 22 ~ww~~~f~~tivfa~~Y~~~ 41 (51)
T PF14715_consen 22 RWWLWLFYGTIVFAVGYLVL 41 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45545555555566666554
No 165
>KOG4331 consensus Polytopic membrane protein Prominin [General function prediction only]
Probab=53.36 E-value=86 Score=29.81 Aligned_cols=69 Identities=14% Similarity=0.057 Sum_probs=39.4
Q ss_pred HhhhcchhHhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH--HhhhhHHHHHHHHHHHh
Q 032617 39 QLRIDPVNADLDDEITGLRSQVKQLRN-VAQEIHSEASFQKDFLDQLQMTLIK--AQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 39 q~~~~~~~~eqD~~Ld~L~~~V~~LK~-va~~I~~Ev~~Qn~lLD~l~~~~d~--~~~~L~~t~~rl~~v~~ 107 (137)
..++.++-++.+..+..|..+|...=. +.-++...+.++-..||.+...+.. +.........+.....+
T Consensus 345 ~sei~~~~q~~~s~~n~l~~kvq~q~s~vv~~~~r~l~q~~~~l~~~a~~l~~ql~~~~~s~~~~k~~~~s~ 416 (865)
T KOG4331|consen 345 TSEILQSVQRGNSLFNVLPDKVQYQTSGVVDDVMRDLPQIPGDLDGLAEKLPSQLANSVFSGVTLKVEASSL 416 (865)
T ss_pred HHHHHHHHHhhhhhhhhhhHHHhhcccccchHHHHHHHhCCchHHHHHhhccHHHHHHHHHHHHHHHHHhhc
Confidence 334455567888999999999865433 4455555555555566665555544 23333334444444444
No 166
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=53.29 E-value=1.8e+02 Score=26.79 Aligned_cols=8 Identities=0% Similarity=0.189 Sum_probs=3.7
Q ss_pred HHHHHHHH
Q 032617 126 FILYMWSK 133 (137)
Q Consensus 126 fvly~l~k 133 (137)
+++++++.
T Consensus 343 ~~~~~~~~ 350 (914)
T PRK11466 343 ALILILWR 350 (914)
T ss_pred HHHHHHHH
Confidence 44444443
No 167
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=53.02 E-value=90 Score=22.99 Aligned_cols=16 Identities=6% Similarity=0.011 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 032617 74 ASFQKDFLDQLQMTLI 89 (137)
Q Consensus 74 v~~Qn~lLD~l~~~~d 89 (137)
+......++++...|.
T Consensus 123 i~~~~~~~~~~~~~l~ 138 (213)
T PF00015_consen 123 IEEGSESVEETSESLE 138 (213)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhhhcccchhcchhhh
Confidence 3333333333333333
No 168
>KOG3633 consensus BAG family molecular chaperone regulator 2 [Posttranslational modification, protein turnover, chaperones]
Probab=52.78 E-value=1.1e+02 Score=24.00 Aligned_cols=18 Identities=17% Similarity=-0.095 Sum_probs=11.2
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 032617 1 MASSSHRGGAGGPFYGGA 18 (137)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (137)
||+||-+|-++++-++..
T Consensus 14 ma~s~~t~~~~eG~~~rs 31 (219)
T KOG3633|consen 14 MAPSPLTSPITEGKPKRS 31 (219)
T ss_pred CCCCCCCCCCCCCCCCcc
Confidence 677777766666644444
No 169
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=52.51 E-value=15 Score=21.87 Aligned_cols=16 Identities=19% Similarity=0.731 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 032617 117 VVLFALFLFFILYMWS 132 (137)
Q Consensus 117 lil~~v~vffvly~l~ 132 (137)
++++++++.+++|.+.
T Consensus 16 v~~~~~F~gi~~w~~~ 31 (49)
T PF05545_consen 16 VLFFVFFIGIVIWAYR 31 (49)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 3344444444444443
No 170
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=52.21 E-value=23 Score=22.87 Aligned_cols=18 Identities=6% Similarity=0.300 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 032617 118 VLFALFLFFILYMWSKMF 135 (137)
Q Consensus 118 il~~v~vffvly~l~k~~ 135 (137)
+.+++++++++|++++++
T Consensus 12 m~iVF~~L~lL~~~i~l~ 29 (79)
T PF04277_consen 12 MGIVFLVLILLILVISLM 29 (79)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555556677776654
No 171
>PHA03240 envelope glycoprotein M; Provisional
Probab=52.15 E-value=16 Score=29.35 Aligned_cols=19 Identities=11% Similarity=0.305 Sum_probs=7.8
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 032617 114 IMHVVLFALFLFFILYMWSK 133 (137)
Q Consensus 114 ~~~lil~~v~vffvly~l~k 133 (137)
.|++|++++ +.+|+.+++|
T Consensus 214 ~WIiilIIi-IiIIIL~cfK 232 (258)
T PHA03240 214 AWIFIAIII-IIVIILFFFK 232 (258)
T ss_pred hHHHHHHHH-HHHHHHHHHh
Confidence 343444444 3344444444
No 172
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=52.12 E-value=1.1e+02 Score=23.92 Aligned_cols=61 Identities=16% Similarity=0.174 Sum_probs=50.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617 47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
...|..++.|...+...+..+.+...-.++-..=|.-+....+++..++..+-.++..+-.
T Consensus 88 ~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~ 148 (237)
T PF00261_consen 88 QSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEE 148 (237)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHH
Confidence 4568899999999999999998888888888888888888888888888887777776655
No 173
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=51.87 E-value=17 Score=30.46 Aligned_cols=21 Identities=5% Similarity=0.320 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 032617 114 IMHVVLFALFLFFILYMWSKM 134 (137)
Q Consensus 114 ~~~lil~~v~vffvly~l~k~ 134 (137)
.+.++++++++|+++|+++++
T Consensus 41 l~~~~~~~~~~~~~~~~~~~~ 61 (398)
T PRK10747 41 VTGLAIILILAMVVLFAIEWL 61 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444544444443
No 174
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.84 E-value=84 Score=30.00 Aligned_cols=66 Identities=17% Similarity=0.087 Sum_probs=54.5
Q ss_pred hcchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617 42 IDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 42 ~~~~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
+-.+-.++|-+++.|.+...++..--.....|+.++++.--.+.+.++.....|+....+...+..
T Consensus 662 yK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q 727 (970)
T KOG0946|consen 662 YKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQ 727 (970)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHh
Confidence 333458899999999999999999999999999999888888888888888888866666655554
No 175
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=51.29 E-value=1.4e+02 Score=24.67 Aligned_cols=26 Identities=19% Similarity=0.179 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHH
Q 032617 80 FLDQLQMTLIKAQAGVKNNMRRLNKS 105 (137)
Q Consensus 80 lLD~l~~~~d~~~~~L~~t~~rl~~v 105 (137)
-+..|..+.+.+...+.....+++..
T Consensus 279 ~~~~L~re~~~a~~~y~~~l~r~~~a 304 (362)
T TIGR01010 279 DYQRLVLQNELAQQQLKAALTSLQQT 304 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777644
No 176
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=51.21 E-value=19 Score=24.63 Aligned_cols=9 Identities=22% Similarity=0.597 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 032617 117 VVLFALFLF 125 (137)
Q Consensus 117 lil~~v~vf 125 (137)
.|+++++|+
T Consensus 29 tILivLVII 37 (85)
T PF10717_consen 29 TILIVLVII 37 (85)
T ss_pred HHHHHHHHH
Confidence 344443333
No 177
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=51.12 E-value=22 Score=26.63 Aligned_cols=12 Identities=42% Similarity=0.717 Sum_probs=8.9
Q ss_pred HHHHHHHHHHhc
Q 032617 125 FFILYMWSKMFR 136 (137)
Q Consensus 125 ffvly~l~k~~~ 136 (137)
+|++|.++|+.+
T Consensus 95 ~f~lY~l~Ki~~ 106 (152)
T PF15361_consen 95 LFILYTLFKIKK 106 (152)
T ss_pred HHHHHHHHHHHh
Confidence 477788888764
No 178
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=51.09 E-value=1.6e+02 Score=26.18 Aligned_cols=50 Identities=8% Similarity=0.147 Sum_probs=34.2
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 032617 46 NADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGV 95 (137)
Q Consensus 46 ~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L 95 (137)
..|+....++|.+++..+|+=...+..+.++...-|++++++.......+
T Consensus 71 LteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 71 TTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 36777788888888888875554444555555566677777766666665
No 179
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=51.09 E-value=86 Score=22.21 Aligned_cols=55 Identities=16% Similarity=0.150 Sum_probs=36.2
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhHHHH
Q 032617 45 VNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKD-FLDQLQMTLIKAQAGVKNNM 99 (137)
Q Consensus 45 ~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~-lLD~l~~~~d~~~~~L~~t~ 99 (137)
+..|-.+-+|.+.+-++.--..+.+=.+|++.+.. .|.+..+.|..+...+..-.
T Consensus 13 l~~el~~L~d~lEevL~ssg~~a~~e~~~lR~r~~~~Lk~~r~rl~~~~d~v~~~s 68 (104)
T COG4575 13 LLAELQELLDTLEEVLKSSGSLAGDEAEELRSKAESALKEARDRLGDTGDAVVQRS 68 (104)
T ss_pred HHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 33555666677776666666677777777776644 88888888877764444333
No 180
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=50.98 E-value=57 Score=20.11 Aligned_cols=54 Identities=24% Similarity=0.318 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhhhhHHHHHHHHHHHh
Q 032617 54 TGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQ--------MTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 54 d~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~--------~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
+.|...+..+...+.+|.+.++.-+..++.|. +.|......+...+.++...+.
T Consensus 7 ~~l~~~a~~~~~~~~~l~~~~~~l~~~~~~l~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~ 68 (86)
T PF06013_consen 7 EQLRAAAQQLQAQADELQSQLQQLESSIDSLQASWQGEAADAFQDKFEEWNQAFRQLNEALE 68 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGBTSSTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666677777777777776666666663 4455555555555555554444
No 181
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=50.79 E-value=1.2e+02 Score=26.48 Aligned_cols=8 Identities=13% Similarity=0.389 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 032617 126 FILYMWSK 133 (137)
Q Consensus 126 fvly~l~k 133 (137)
+++|++.+
T Consensus 140 ~~~~~~~r 147 (569)
T PRK10600 140 FTIIWLRR 147 (569)
T ss_pred HHHHHHHH
Confidence 33344433
No 182
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=50.64 E-value=35 Score=20.60 Aligned_cols=26 Identities=8% Similarity=0.079 Sum_probs=19.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhc
Q 032617 111 SNHIMHVVLFALFLFFILYMWSKMFR 136 (137)
Q Consensus 111 ~~~~~~lil~~v~vffvly~l~k~~~ 136 (137)
+..++.++++++.+..-+|.++|..|
T Consensus 30 t~p~~~~~g~llG~~~g~~~~~~~~k 55 (55)
T PF09527_consen 30 TSPWFTLIGLLLGIAAGFYNVYRLVK 55 (55)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34677778888888888888888765
No 183
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=50.43 E-value=55 Score=27.84 Aligned_cols=56 Identities=14% Similarity=0.188 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHhh
Q 032617 53 ITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQA--GVKNNMRRLNKSIVK 108 (137)
Q Consensus 53 Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~--~L~~t~~rl~~v~~~ 108 (137)
....++.|..+-+.=..|.+|++....-+++=+..|+.+.- +++.+..||+.=+++
T Consensus 289 y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~q 346 (359)
T PF10498_consen 289 YKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQ 346 (359)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445555555555555555555555555 566666666654443
No 184
>PRK03814 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=50.40 E-value=26 Score=23.74 Aligned_cols=9 Identities=11% Similarity=0.191 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 032617 125 FFILYMWSK 133 (137)
Q Consensus 125 ffvly~l~k 133 (137)
+.++|++++
T Consensus 26 L~lLi~~~~ 34 (85)
T PRK03814 26 LTLLVYLVQ 34 (85)
T ss_pred HHHHHHHHH
Confidence 333343333
No 185
>PF13150 DUF3989: Protein of unknown function (DUF3989)
Probab=50.36 E-value=43 Score=22.71 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=17.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHH
Q 032617 111 SNHIMHVVLFALFLFFILYMWSKM 134 (137)
Q Consensus 111 ~~~~~~lil~~v~vffvly~l~k~ 134 (137)
.+..+.+++|+++..+-+|++++-
T Consensus 26 ~R~~vvl~ml~~fa~l~ly~~~~a 49 (85)
T PF13150_consen 26 QRLRVVLVMLVLFAALCLYMTVSA 49 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777888887764
No 186
>PF06682 DUF1183: Protein of unknown function (DUF1183); InterPro: IPR009567 This family consists of several eukaryotic proteins of around 360 residues in length. The function of this family is unknown.
Probab=50.29 E-value=15 Score=30.82 Aligned_cols=19 Identities=32% Similarity=0.553 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 032617 114 IMHVVLFALFLFFILYMWS 132 (137)
Q Consensus 114 ~~~lil~~v~vffvly~l~ 132 (137)
++++|+|+++++||||-++
T Consensus 158 ~lf~ii~l~vla~ivY~~~ 176 (318)
T PF06682_consen 158 WLFWIIFLLVLAFIVYSLF 176 (318)
T ss_pred hhhhHHHHHHHHHHHHHHH
Confidence 3444444444445555443
No 187
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=50.06 E-value=1.4e+02 Score=25.02 Aligned_cols=14 Identities=7% Similarity=-0.038 Sum_probs=6.4
Q ss_pred hhHHHHHHHHHHHh
Q 032617 94 GVKNNMRRLNKSIV 107 (137)
Q Consensus 94 ~L~~t~~rl~~v~~ 107 (137)
.|.....++.+...
T Consensus 341 ~L~~~L~~la~~~~ 354 (399)
T PRK10573 341 SLDLMLENLAHWHQ 354 (399)
T ss_pred cHHHHHHHHHHHHH
Confidence 44444444444444
No 188
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=49.62 E-value=23 Score=22.01 Aligned_cols=22 Identities=23% Similarity=0.161 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 032617 115 MHVVLFALFLFFILYMWSKMFR 136 (137)
Q Consensus 115 ~~lil~~v~vffvly~l~k~~~ 136 (137)
|++-++++++||-.|+++|-.|
T Consensus 3 wWvY~vi~gI~~S~ym~v~t~~ 24 (52)
T PF14147_consen 3 WWVYFVIAGIIFSGYMAVKTAK 24 (52)
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777788888887544
No 189
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=49.53 E-value=1.1e+02 Score=24.11 Aligned_cols=20 Identities=35% Similarity=0.358 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032617 69 EIHSEASFQKDFLDQLQMTL 88 (137)
Q Consensus 69 ~I~~Ev~~Qn~lLD~l~~~~ 88 (137)
.|.+|+.+-..=||.+....
T Consensus 166 ~ie~~L~~v~~eIe~~~~~~ 185 (262)
T PF14257_consen 166 EIERELSRVRSEIEQLEGQL 185 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555544444444444433
No 190
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=49.33 E-value=1.8e+02 Score=25.33 Aligned_cols=58 Identities=12% Similarity=0.168 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617 50 DDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 50 D~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
.+..+.+.+....+...+.++...+++|..-++++...++.....+.........+..
T Consensus 269 ~~~s~~v~~~s~el~~~~~~ls~~~~~qa~~i~~i~~s~eeis~~~~e~~~~~~~~~~ 326 (553)
T PRK15048 269 REGSDAIYAGTREIAAGNTDLSSRTEQQASALEETAASMEQLTATVKQNADNARQASQ 326 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555556666667777777777777666666666555555444433
No 191
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=49.15 E-value=22 Score=26.96 Aligned_cols=9 Identities=11% Similarity=0.257 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 032617 126 FILYMWSKM 134 (137)
Q Consensus 126 fvly~l~k~ 134 (137)
+++|+++-+
T Consensus 43 iiiivli~l 51 (189)
T PF05568_consen 43 IIIIVLIYL 51 (189)
T ss_pred HHHHHHHHH
Confidence 344444433
No 192
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=49.09 E-value=22 Score=26.63 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 032617 113 HIMHVVLFALFLFFILYMWSKM 134 (137)
Q Consensus 113 ~~~~lil~~v~vffvly~l~k~ 134 (137)
..|.+|-|+|+++++.++++|-
T Consensus 25 ~~~~~inflil~~lL~~fl~kP 46 (167)
T PRK08475 25 IIERTINFLIFVGILWYFAAKP 46 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777663
No 193
>PF05644 Miff: Mitochondrial and peroxisomal fission factor Mff; InterPro: IPR008518 This family consists of several eukaryotic proteins of unknown function.
Probab=49.04 E-value=61 Score=26.26 Aligned_cols=48 Identities=17% Similarity=0.182 Sum_probs=21.3
Q ss_pred HHhhhhHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcC
Q 032617 90 KAQAGVKNNMRRLNKSIVKHGSNHIMHVVLFALFLFFILYMWSKMFRR 137 (137)
Q Consensus 90 ~~~~~L~~t~~rl~~v~~~~~~~~~~~lil~~v~vffvly~l~k~~~~ 137 (137)
.....+.+..+||.-+-.....+..-=+|++++.+-|.+.-.|-|+||
T Consensus 199 ~lrrQi~klnrRl~~lE~~n~~r~~re~~~y~~~va~~l~n~w~w~~r 246 (246)
T PF05644_consen 199 SLRRQIIKLNRRLQALEEENKERQQREMILYSITVAFWLLNSWLWLRR 246 (246)
T ss_pred HHHHHHHHHhHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 344555556666666655433332222344444433333333334443
No 194
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=49.02 E-value=1.5e+02 Score=24.31 Aligned_cols=45 Identities=16% Similarity=0.201 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 032617 59 QVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLN 103 (137)
Q Consensus 59 ~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~ 103 (137)
.+..+...+..+.+++..=.+-++++...++++....+.+.+++.
T Consensus 234 na~~I~~~~~~l~~~~~~~~~~~~~l~k~l~~a~~~~~~~~~~~~ 278 (304)
T PF02646_consen 234 NAEEIAELAGKLYDRFGKFVEHLEKLGKSLDKAVKSYNKAVGSLE 278 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444444444444433
No 195
>PRK01371 sec-independent translocase; Provisional
Probab=48.98 E-value=63 Score=23.95 Aligned_cols=49 Identities=18% Similarity=0.298 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHhhhhHHHH
Q 032617 51 DEITGLRSQVKQLRNVAQEIHSEASFQ--------------------KDFLDQLQMTLIKAQAGVKNNM 99 (137)
Q Consensus 51 ~~Ld~L~~~V~~LK~va~~I~~Ev~~Q--------------------n~lLD~l~~~~d~~~~~L~~t~ 99 (137)
+..-.++..++.+|+.+.+..+|+++. +.++|+.+++++.....++.+.
T Consensus 27 ~~ar~lg~~ir~~R~~~~~ak~~i~~Elg~ef~d~d~r~l~Pr~~vrk~l~d~~~~~~~~~~~~~~~~~ 95 (137)
T PRK01371 27 KAARDAGRTLRQLREMANNARNDLRSELGPEFADLDLRDLNPKTFVRKHLLEDLDDDIDEIKLGLKTVR 95 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcccchhhcCHHHHHHHHHhhcchhhhhhhhhhHHhhh
Confidence 345677888888888766666665543 3567777777766655554443
No 196
>PHA02849 putative transmembrane protein; Provisional
Probab=48.95 E-value=30 Score=23.37 Aligned_cols=9 Identities=33% Similarity=0.482 Sum_probs=4.4
Q ss_pred HHHHHHHHH
Q 032617 126 FILYMWSKM 134 (137)
Q Consensus 126 fvly~l~k~ 134 (137)
|++.+++||
T Consensus 32 flLlyLvkw 40 (82)
T PHA02849 32 FMLLYLIKW 40 (82)
T ss_pred HHHHHHHHH
Confidence 444445554
No 197
>COG3190 FliO Flagellar biogenesis protein [Cell motility and secretion]
Probab=48.88 E-value=21 Score=26.48 Aligned_cols=20 Identities=15% Similarity=0.539 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 032617 117 VVLFALFLFFILYMWSKMFR 136 (137)
Q Consensus 117 lil~~v~vffvly~l~k~~~ 136 (137)
+++++.+|+|..|++-|+.|
T Consensus 31 L~~iL~lil~~~wl~kr~~~ 50 (137)
T COG3190 31 LILILALILFLAWLVKRLGR 50 (137)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 56666677788888888754
No 198
>PF14018 DUF4234: Domain of unknown function (DUF4234)
Probab=48.70 E-value=55 Score=20.89 Aligned_cols=38 Identities=11% Similarity=0.085 Sum_probs=18.2
Q ss_pred HHHHHHHHhhc--CCchhHH-HHHHHHHHHHHHHHHHHHhc
Q 032617 99 MRRLNKSIVKH--GSNHIMH-VVLFALFLFFILYMWSKMFR 136 (137)
Q Consensus 99 ~~rl~~v~~~~--~~~~~~~-lil~~v~vffvly~l~k~~~ 136 (137)
.+.++.+.++. .....++ ++.++.+.++-+|+..|+.+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~lll~ilt~gi~~i~w~~k~~~ 66 (75)
T PF14018_consen 26 WKELNQLTGRIISPRSMTLWLLLSILTCGIYSIYWAYKLGN 66 (75)
T ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555543 1223332 33333345666777777643
No 199
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=48.61 E-value=69 Score=22.22 Aligned_cols=16 Identities=6% Similarity=0.189 Sum_probs=10.1
Q ss_pred hhHHHHHHHHHHHhhc
Q 032617 94 GVKNNMRRLNKSIVKH 109 (137)
Q Consensus 94 ~L~~t~~rl~~v~~~~ 109 (137)
....+..+++..++++
T Consensus 34 ef~~iI~~IN~~l~~a 49 (118)
T PF10256_consen 34 EFEEIINTINQILKEA 49 (118)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455666677777765
No 200
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=48.59 E-value=28 Score=24.10 Aligned_cols=24 Identities=8% Similarity=0.318 Sum_probs=11.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHh
Q 032617 112 NHIMHVVLFALFLFFILYMWSKMF 135 (137)
Q Consensus 112 ~~~~~lil~~v~vffvly~l~k~~ 135 (137)
+.+.++++|+++++++.++++.++
T Consensus 50 RN~GIli~f~i~f~~~~~~~~e~~ 73 (103)
T PF06422_consen 50 RNFGILIAFWIFFIVLTLLATEFI 73 (103)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445555555444444444443
No 201
>PF12495 Vip3A_N: Vegetative insecticide protein 3A N terminal ; InterPro: IPR022180 This family of proteins is found in bacteria. Proteins in this family are typically between 170 and 789 amino acids in length. The family is found in association with PF02018 from PFAM. Vip3A represents a novel class of proteins insecticidal to lepidopteran insect larvae.
Probab=48.48 E-value=93 Score=23.09 Aligned_cols=74 Identities=16% Similarity=0.276 Sum_probs=46.7
Q ss_pred CCchhhHhhhcchhHhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 032617 33 AGSDEIQLRIDPVNADLDDEITGLRSQVKQLR-------NVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKS 105 (137)
Q Consensus 33 ~~~~~~q~~~~~~~~eqD~~Ld~L~~~V~~LK-------~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v 105 (137)
.+-|++--+++-+ .+-...||.+...+..|- +++..|-.=..+||.+|++.+..++.....|+.-.-|+..+
T Consensus 35 ltldeilknq~ll-n~is~kldging~l~dliaqgnln~el~ke~lkianeqn~~ln~vn~~l~~in~~l~~ylpkitsm 113 (177)
T PF12495_consen 35 LTLDEILKNQQLL-NQISDKLDGINGSLNDLIAQGNLNSELSKEILKIANEQNQMLNNVNNQLNSINSMLNTYLPKITSM 113 (177)
T ss_pred ccHHHHHHhHHHH-HHhcccccccCCcHHHHHHcCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3445554444332 333444555444444432 35556666678999999999999999988888776666555
Q ss_pred Hh
Q 032617 106 IV 107 (137)
Q Consensus 106 ~~ 107 (137)
+.
T Consensus 114 ls 115 (177)
T PF12495_consen 114 LS 115 (177)
T ss_pred HH
Confidence 54
No 202
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=48.18 E-value=1.1e+02 Score=22.48 Aligned_cols=62 Identities=23% Similarity=0.313 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhc
Q 032617 48 DLDDEITGLRSQVKQLRNVAQEIHS---EASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKH 109 (137)
Q Consensus 48 eqD~~Ld~L~~~V~~LK~va~~I~~---Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~ 109 (137)
.-+..+|.+...+...+.....-.. .++.=++-+..|+..++.+...|+.+..++...-.+.
T Consensus 46 ~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~a 110 (143)
T PF12718_consen 46 QLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKA 110 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566666666666665444433 2334555677778888888888888888887776654
No 203
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=48.03 E-value=1e+02 Score=25.13 Aligned_cols=31 Identities=19% Similarity=0.359 Sum_probs=25.5
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032617 46 NADLDDEITGLRSQVKQLRNVAQEIHSEASF 76 (137)
Q Consensus 46 ~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~ 76 (137)
.-+|.+.+-.|+.-|..+|+.-..|.+|++.
T Consensus 108 LI~ngekI~~Ly~e~~~vk~~qkrLdq~L~~ 138 (254)
T KOG2196|consen 108 LIENGEKISGLYNEVVKVKLDQKRLDQELEF 138 (254)
T ss_pred HHhCcHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4567778888888888889999999999874
No 204
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=48.02 E-value=28 Score=28.08 Aligned_cols=19 Identities=26% Similarity=0.604 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 032617 113 HIMHVVLFALFLFFILYMW 131 (137)
Q Consensus 113 ~~~~lil~~v~vffvly~l 131 (137)
.++|+|++-++||+++|++
T Consensus 222 f~~Y~l~LH~lvf~~l~~~ 240 (248)
T PF08172_consen 222 FFFYCLGLHLLVFFVLYYM 240 (248)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567777778888888873
No 205
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=47.97 E-value=2.3e+02 Score=26.53 Aligned_cols=18 Identities=11% Similarity=0.113 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032617 62 QLRNVAQEIHSEASFQKD 79 (137)
Q Consensus 62 ~LK~va~~I~~Ev~~Qn~ 79 (137)
.+|..-..|++++..+.+
T Consensus 361 ~ik~~l~~~~~~i~~~a~ 378 (806)
T PF05478_consen 361 PIKRDLDSIGKQIRSQAK 378 (806)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444555444433
No 206
>PF06682 DUF1183: Protein of unknown function (DUF1183); InterPro: IPR009567 This family consists of several eukaryotic proteins of around 360 residues in length. The function of this family is unknown.
Probab=47.91 E-value=21 Score=30.03 Aligned_cols=22 Identities=14% Similarity=0.434 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 032617 115 MHVVLFALFLFFILYMWSKMFR 136 (137)
Q Consensus 115 ~~lil~~v~vffvly~l~k~~~ 136 (137)
.-.+++++++++|.|+++++++
T Consensus 156 ~~~lf~ii~l~vla~ivY~~~~ 177 (318)
T PF06682_consen 156 GSWLFWIIFLLVLAFIVYSLFL 177 (318)
T ss_pred cchhhhHHHHHHHHHHHHHHHh
Confidence 5578888888999999999886
No 207
>PF12420 DUF3671: Protein of unknown function ; InterPro: IPR022139 This domain family is found in eukaryotes, and is typically between 96 and 116 amino acids in length.
Probab=47.86 E-value=25 Score=24.66 Aligned_cols=22 Identities=18% Similarity=0.736 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 032617 115 MHVVLFALFLFFILYMWSKMFR 136 (137)
Q Consensus 115 ~~lil~~v~vffvly~l~k~~~ 136 (137)
...++.++++++++|.++|+.+
T Consensus 81 f~~i~~~i~ll~iiYi~~KviK 102 (104)
T PF12420_consen 81 FFIIFITIILLVIIYIFIKVIK 102 (104)
T ss_pred hhHHHHHHHHHHHHHHHHhhcc
Confidence 3344455556677777777654
No 208
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=47.52 E-value=25 Score=22.48 Aligned_cols=19 Identities=21% Similarity=0.550 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 032617 115 MHVVLFALFLFFILYMWSK 133 (137)
Q Consensus 115 ~~lil~~v~vffvly~l~k 133 (137)
|.++.+.++++-++|+.++
T Consensus 13 ~~t~~~~l~fiavi~~ayr 31 (60)
T COG4736 13 WGTIAFTLFFIAVIYFAYR 31 (60)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4445555555555555554
No 209
>TIGR02120 GspF general secretion pathway protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.
Probab=47.47 E-value=1.6e+02 Score=24.57 Aligned_cols=12 Identities=25% Similarity=0.492 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 032617 123 FLFFILYMWSKM 134 (137)
Q Consensus 123 ~vffvly~l~k~ 134 (137)
++++++.+++.+
T Consensus 381 v~~i~~~~~lP~ 392 (399)
T TIGR02120 381 VLFIVLAVLLPI 392 (399)
T ss_pred HHHHHHHHHHHH
Confidence 333444444443
No 210
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=47.39 E-value=53 Score=23.00 Aligned_cols=29 Identities=17% Similarity=0.415 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032617 61 KQLRNVAQEIHSEASFQKDFLDQLQMTLI 89 (137)
Q Consensus 61 ~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d 89 (137)
.+|+.+=..+.+|+..|.+-||+++..++
T Consensus 72 EqL~~Lk~kl~~e~~~~~k~i~~le~~I~ 100 (100)
T PF04568_consen 72 EQLKKLKEKLKEEIEHHRKEIDELEKHIE 100 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34555556778889999999999988764
No 211
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=47.18 E-value=24 Score=27.47 Aligned_cols=19 Identities=21% Similarity=0.665 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 032617 116 HVVLFALFLFFILYMWSKM 134 (137)
Q Consensus 116 ~lil~~v~vffvly~l~k~ 134 (137)
.+|-|++++|++.|+++|-
T Consensus 54 qlInFlIlv~lL~k~l~kP 72 (205)
T PRK06231 54 HLIAFSILLLLGIFLFWKP 72 (205)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666653
No 212
>TIGR02848 spore_III_AC stage III sporulation protein AC. Members of this protein family are designated SpoIIIAC, part of the spoIIIA operon of sporulation genes whose mutant phenotype is linked to sporulation stage III. Members of this family are encoded by the genome of a species if and only if that species is capable of endospore formation, as in Bacillus subtilis. The molecular function of this small, probable integral membrane protein is unknown.
Probab=46.83 E-value=63 Score=20.93 Aligned_cols=36 Identities=11% Similarity=0.397 Sum_probs=22.4
Q ss_pred HHHHHHHhhcCC---chhHHHHHHHHHHHHHHHHHHHHh
Q 032617 100 RRLNKSIVKHGS---NHIMHVVLFALFLFFILYMWSKMF 135 (137)
Q Consensus 100 ~rl~~v~~~~~~---~~~~~lil~~v~vffvly~l~k~~ 135 (137)
.=+..++++++. ..+..++.++++++.++-++..+|
T Consensus 17 avl~~vLk~sGkee~A~~~tLaG~iiVL~~Vi~~i~~LF 55 (64)
T TIGR02848 17 AVIHTILKQSGKEEQAQMVTLAGIVVVLFMVITLINDLF 55 (64)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677787654 355566666677766666665554
No 213
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=46.28 E-value=1.3e+02 Score=23.04 Aligned_cols=9 Identities=22% Similarity=0.213 Sum_probs=2.7
Q ss_pred HHHHHHHHH
Q 032617 57 RSQVKQLRN 65 (137)
Q Consensus 57 ~~~V~~LK~ 65 (137)
++...+|++
T Consensus 108 ~~tf~rL~~ 116 (171)
T PF04799_consen 108 SSTFARLCQ 116 (171)
T ss_dssp --HHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 214
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=46.08 E-value=2.6e+02 Score=27.46 Aligned_cols=54 Identities=22% Similarity=0.348 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 032617 50 DDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLN 103 (137)
Q Consensus 50 D~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~ 103 (137)
|+.+..|..-+.+++.-=..+.++.++...-|+.++..+......+...-+++.
T Consensus 660 d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~ 713 (1074)
T KOG0250|consen 660 DDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIR 713 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444433344444444555555555555555554444444443
No 215
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.07 E-value=1.1e+02 Score=25.74 Aligned_cols=29 Identities=7% Similarity=0.311 Sum_probs=12.6
Q ss_pred hcchhHhhHHHHHHHHHHHHHHHHHHHHH
Q 032617 42 IDPVNADLDDEITGLRSQVKQLRNVAQEI 70 (137)
Q Consensus 42 ~~~~~~eqD~~Ld~L~~~V~~LK~va~~I 70 (137)
++.+|.||-..+..+.+-..-.+++-..+
T Consensus 213 ~Q~~E~En~~l~~~~n~~~devrqie~~l 241 (316)
T KOG3894|consen 213 VQLLETENQRLLNELNELLDEVRQIEKRL 241 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555444444443333333333
No 216
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=45.87 E-value=1.7e+02 Score=24.04 Aligned_cols=56 Identities=20% Similarity=0.122 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhc
Q 032617 54 TGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKH 109 (137)
Q Consensus 54 d~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~ 109 (137)
+++.-.|++|++....+.-.+++|...--+|..+.|.+...=..-..++..+-++.
T Consensus 12 ed~rL~v~~LhHQvlTLqcQLRDQ~~ahreLQas~dEa~~L~~~L~~kl~eLqkk~ 67 (277)
T PF15030_consen 12 EDLRLRVQQLHHQVLTLQCQLRDQGSAHRELQASRDEATRLQDELQGKLEELQKKQ 67 (277)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55677889999999999999999999999999999888777777777787777754
No 217
>TIGR00782 ccoP cytochrome c oxidase, cbb3-type, subunit III. This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase.
Probab=45.81 E-value=24 Score=28.59 Aligned_cols=21 Identities=10% Similarity=0.121 Sum_probs=13.2
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q 032617 112 NHIMHVVLFALFLFFILYMWS 132 (137)
Q Consensus 112 ~~~~~lil~~v~vffvly~l~ 132 (137)
..||.++|++.+||-|+|+++
T Consensus 27 P~ww~~~f~~~i~~~~~y~~~ 47 (285)
T TIGR00782 27 PRWWLWTFYATIVWGFGYLVA 47 (285)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666554
No 218
>PF06084 Cytomega_TRL10: Cytomegalovirus TRL10 protein; InterPro: IPR009284 This family consists of several Cytomegalovirus TRL10 proteins. TRL10 represents a structural component of the virus particle and like the other HCMV envelope glycoproteins, is present in a disulphide-linked complex [].
Probab=45.57 E-value=11 Score=27.51 Aligned_cols=12 Identities=33% Similarity=1.082 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHH
Q 032617 118 VLFALFLFFILY 129 (137)
Q Consensus 118 il~~v~vffvly 129 (137)
.++++++|||+|
T Consensus 69 liillviffviy 80 (150)
T PF06084_consen 69 LIILLVIFFVIY 80 (150)
T ss_pred HHHHHHHhheeE
Confidence 334455566665
No 219
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=45.43 E-value=1.3e+02 Score=22.46 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032617 54 TGLRSQVKQLRNVAQEIHSEASFQK 78 (137)
Q Consensus 54 d~L~~~V~~LK~va~~I~~Ev~~Qn 78 (137)
++.-+.+..=|++|.+|..|....+
T Consensus 44 eeii~~LG~P~~iA~~i~~~~~i~~ 68 (181)
T PF08006_consen 44 EEIIAELGSPKEIAREILAEYSIKE 68 (181)
T ss_pred HHHHHHcCCHHHHHHHHHHhhhhhh
Confidence 5556666667778888777655443
No 220
>PRK04098 sec-independent translocase; Provisional
Probab=45.40 E-value=1.3e+02 Score=22.76 Aligned_cols=52 Identities=10% Similarity=0.239 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 032617 52 EITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNK 104 (137)
Q Consensus 52 ~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~ 104 (137)
..-.++..++.+|..+.+..+++++.-. ++++...+......|..+...+++
T Consensus 28 ~~r~lGk~ir~~K~~~~~~k~~l~~Ei~-~~elk~e~~k~k~~l~~~~~~l~~ 79 (158)
T PRK04098 28 AMVDIAKFFKAVKKTINDAKSTLDKEIN-IEEIKEEALKYKKEFESAVESLKK 79 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445666777777777777666666543 455555555555555554444443
No 221
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins. It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.
Probab=45.37 E-value=8.8 Score=27.64 Aligned_cols=11 Identities=27% Similarity=0.679 Sum_probs=2.6
Q ss_pred HHHHHHHHHHh
Q 032617 125 FFILYMWSKMF 135 (137)
Q Consensus 125 ffvly~l~k~~ 135 (137)
++=+|++=|+|
T Consensus 172 ~~Qv~~lk~~f 182 (183)
T PF01105_consen 172 VWQVYYLKKFF 182 (183)
T ss_dssp ------HHHHH
T ss_pred HHHHHHHHHHh
Confidence 34445555554
No 222
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=45.32 E-value=27 Score=26.14 Aligned_cols=22 Identities=9% Similarity=0.203 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 032617 113 HIMHVVLFALFLFFILYMWSKM 134 (137)
Q Consensus 113 ~~~~lil~~v~vffvly~l~k~ 134 (137)
..|-+|-|+|+++++.|+++|-
T Consensus 22 ~~~~iinflIl~~lL~~fl~kp 43 (174)
T PRK07352 22 LETNLINLAIVIGLLYYFGRGF 43 (174)
T ss_pred HHHHHHHHHHHHHHHHHHhHHH
Confidence 3344566666666666666664
No 223
>PRK13415 flagella biosynthesis protein FliZ; Provisional
Probab=45.32 E-value=26 Score=28.01 Aligned_cols=21 Identities=24% Similarity=0.588 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 032617 115 MHVVLFALFLFFILYMWSKMF 135 (137)
Q Consensus 115 ~~lil~~v~vffvly~l~k~~ 135 (137)
.-+++.+++|++++|++.||+
T Consensus 69 ~qmi~aL~~VI~Liy~l~rwL 89 (219)
T PRK13415 69 VKLIGATLFVIFLIYALVKWL 89 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334555555566667666654
No 224
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=45.31 E-value=1.3e+02 Score=22.75 Aligned_cols=50 Identities=20% Similarity=0.244 Sum_probs=27.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 032617 47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVK 96 (137)
Q Consensus 47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~ 96 (137)
.+-.+--+.|.+.++.|+.-+..+..-+..++.-|++|...+++....++
T Consensus 131 ~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~I~ 180 (184)
T PF05791_consen 131 NELNDFKDKLQKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEEIK 180 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGGG-
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 33344444555566666666666666666666666666666666555544
No 225
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=45.01 E-value=25 Score=24.72 Aligned_cols=18 Identities=22% Similarity=0.443 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032617 115 MHVVLFALFLFFILYMWS 132 (137)
Q Consensus 115 ~~lil~~v~vffvly~l~ 132 (137)
+..+++++++|.++|++.
T Consensus 18 ~~~ll~lvii~~i~yf~~ 35 (106)
T PRK05585 18 LSSLLPLVVFFAIFYFLI 35 (106)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 334444455555556554
No 226
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=44.74 E-value=1.3e+02 Score=22.38 Aligned_cols=67 Identities=9% Similarity=0.208 Sum_probs=48.5
Q ss_pred hhhHhhhcchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 032617 36 DEIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRL 102 (137)
Q Consensus 36 ~~~q~~~~~~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl 102 (137)
+.+..-++.++.+-++.++.+..-+..+..-+..|..|++.-...-...++..++..+-|..+|...
T Consensus 25 e~~~dtLe~i~~~~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~m~~~ 91 (162)
T PF05565_consen 25 EAIADTLESIEDEIEEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDAMEAA 91 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444444556667788888888888888888888888888777777777777777777777766654
No 227
>PHA00547 hypothetical protein
Probab=44.64 E-value=27 Score=29.21 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Q 032617 113 HIMHVVLFALFLFFILYMWSKMF 135 (137)
Q Consensus 113 ~~~~lil~~v~vffvly~l~k~~ 135 (137)
.....|+|+++.++++|++++.+
T Consensus 37 ~iifiIFfv~~~IyfIw~ffkn~ 59 (337)
T PHA00547 37 GLVFWILFALQCIYFVWWLWKNI 59 (337)
T ss_pred chhHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666667777777664
No 228
>PHA02955 hypothetical protein; Provisional
Probab=44.16 E-value=31 Score=27.42 Aligned_cols=22 Identities=14% Similarity=0.298 Sum_probs=10.9
Q ss_pred hHHHHH--HHHHHHHHHHHHHHHh
Q 032617 114 IMHVVL--FALFLFFILYMWSKMF 135 (137)
Q Consensus 114 ~~~lil--~~v~vffvly~l~k~~ 135 (137)
.|++++ +++++|+++|++-|-.
T Consensus 180 ~w~ii~~v~ii~~~v~l~yikR~i 203 (213)
T PHA02955 180 KWFIIYIVLCLLILIILGYIYRTV 203 (213)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHh
Confidence 444433 3344555566665543
No 229
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=44.06 E-value=91 Score=20.45 Aligned_cols=23 Identities=13% Similarity=0.231 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHH
Q 032617 79 DFLDQLQMTLIKAQAGVKNNMRR 101 (137)
Q Consensus 79 ~lLD~l~~~~d~~~~~L~~t~~r 101 (137)
+.|++|+.++...+=++.+.++.
T Consensus 9 r~L~eiEr~L~~~DP~fa~~l~~ 31 (82)
T PF11239_consen 9 RRLEEIERQLRADDPRFAARLRS 31 (82)
T ss_pred HHHHHHHHHHHhcCcHHHHHhcc
Confidence 59999999999999888888777
No 230
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=44.05 E-value=2e+02 Score=24.32 Aligned_cols=51 Identities=10% Similarity=0.306 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 032617 53 ITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLN 103 (137)
Q Consensus 53 Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~ 103 (137)
....++.+..|...-.+|..+++.-+.+|+.++..|......+...++.|.
T Consensus 331 a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~i~~n~~~le 381 (388)
T PF04912_consen 331 AAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEKFKENMETIEKNVKKLE 381 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555566666666667776777777777776666666666665553
No 231
>PHA03231 glycoprotein BALF4; Provisional
Probab=43.76 E-value=1.3e+02 Score=28.66 Aligned_cols=18 Identities=6% Similarity=0.274 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032617 117 VVLFALFLFFILYMWSKM 134 (137)
Q Consensus 117 lil~~v~vffvly~l~k~ 134 (137)
++++++++++++|++++-
T Consensus 709 iillvia~vv~v~l~~rr 726 (829)
T PHA03231 709 IGLLVIAVLVAVFLAYRR 726 (829)
T ss_pred HHHHHHHHhhhhhHHHHH
Confidence 455555555666666554
No 232
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=43.61 E-value=1.2e+02 Score=22.52 Aligned_cols=30 Identities=20% Similarity=0.284 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 032617 68 QEIHSEASFQKDFLDQLQMTLIKAQAGVKN 97 (137)
Q Consensus 68 ~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~ 97 (137)
.|+.++.+.=.-.+.+|+...+.+....++
T Consensus 120 ~D~~~Q~k~i~l~~~~L~~~~~~a~~~~~~ 149 (170)
T PF09548_consen 120 SDREMQEKHIELYLEQLEQQLEEAREEAKK 149 (170)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356666666666777788888887665443
No 233
>PRK03814 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=43.32 E-value=39 Score=22.88 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhc
Q 032617 113 HIMHVVLFALFLFFILYMWSKMFR 136 (137)
Q Consensus 113 ~~~~lil~~v~vffvly~l~k~~~ 136 (137)
++..+++|++++.+++.++.|+++
T Consensus 18 GM~~VF~fL~lLi~~~~l~~~~~~ 41 (85)
T PRK03814 18 GMGVVFIFLTLLVYLVQLMSKLIP 41 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456666677777777777777754
No 234
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=43.11 E-value=34 Score=21.99 Aligned_cols=16 Identities=6% Similarity=0.370 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 032617 118 VLFALFLFFILYMWSK 133 (137)
Q Consensus 118 il~~v~vffvly~l~k 133 (137)
++|++++++++|+++.
T Consensus 46 ~~~li~aLi~v~vvL~ 61 (64)
T COG4068 46 LMFLILALILVMVVLP 61 (64)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 3344444455555543
No 235
>PRK02793 phi X174 lysis protein; Provisional
Probab=43.02 E-value=92 Score=20.22 Aligned_cols=30 Identities=17% Similarity=0.237 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 032617 72 SEASFQKDFLDQLQMTLIKAQAGVKNNMRR 101 (137)
Q Consensus 72 ~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~r 101 (137)
.-+..|.+.+++|++.+..-+..+..-.+.
T Consensus 15 ~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~ 44 (72)
T PRK02793 15 SRLAFQEITIEELNVTVTAHEMEMAKLRDH 44 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555333333333
No 236
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=42.68 E-value=51 Score=18.04 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHh
Q 032617 119 LFALFLFFILYMWSKMF 135 (137)
Q Consensus 119 l~~v~vffvly~l~k~~ 135 (137)
..+++++++.|+.+.++
T Consensus 8 g~llv~lLl~YLvYAL~ 24 (29)
T PRK14750 8 GALLVLLLLGYLVYALF 24 (29)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 34444555566666544
No 237
>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=42.21 E-value=99 Score=20.51 Aligned_cols=30 Identities=7% Similarity=0.109 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617 79 DFLDQLQMTLIKAQAGVKNNMRRLNKSIVK 108 (137)
Q Consensus 79 ~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~ 108 (137)
+-|+.++..++.....|+++...+.++-..
T Consensus 8 ~~Lr~IN~~ie~~~~~L~~a~~~~~~v~~~ 37 (78)
T PF08651_consen 8 EQLRKINPVIEGLIETLRSAKSNMNRVQET 37 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555565555555555553
No 238
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=42.05 E-value=54 Score=29.54 Aligned_cols=18 Identities=11% Similarity=0.063 Sum_probs=7.8
Q ss_pred HHHHHHhhhhHHHHHHHH
Q 032617 86 MTLIKAQAGVKNNMRRLN 103 (137)
Q Consensus 86 ~~~d~~~~~L~~t~~rl~ 103 (137)
+.+...-..|+....|+.
T Consensus 460 srves~~~~Lk~s~pKan 477 (538)
T PF05781_consen 460 SRVESWASYLKTSFPKAN 477 (538)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444444
No 239
>PHA03295 envelope glycoprotein H; Provisional
Probab=41.90 E-value=31 Score=32.06 Aligned_cols=26 Identities=19% Similarity=0.475 Sum_probs=19.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhc
Q 032617 111 SNHIMHVVLFALFLFFILYMWSKMFR 136 (137)
Q Consensus 111 ~~~~~~lil~~v~vffvly~l~k~~~ 136 (137)
...+|.+|++++++.+.+|.++|++|
T Consensus 687 ~~~ii~iil~~i~ai~~ly~lykm~~ 712 (714)
T PHA03295 687 QTSIILVIIYVLIAIIALFGLYRLCR 712 (714)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHc
Confidence 34566677777888888888888877
No 240
>PF15106 TMEM156: TMEM156 protein family
Probab=41.86 E-value=29 Score=27.74 Aligned_cols=26 Identities=15% Similarity=0.419 Sum_probs=20.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhc
Q 032617 111 SNHIMHVVLFALFLFFILYMWSKMFR 136 (137)
Q Consensus 111 ~~~~~~lil~~v~vffvly~l~k~~~ 136 (137)
.|..+++++|+++++|++|-++.=.|
T Consensus 177 TWYvLVllVfiflii~iI~KIle~hr 202 (226)
T PF15106_consen 177 TWYVLVLLVFIFLIILIIYKILEGHR 202 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 47788888899999999998875444
No 241
>PF12064 DUF3544: Domain of unknown function (DUF3544); InterPro: IPR021931 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 198 to 216 amino acids in length. This domain is found associated with PF00628 from PFAM, PF01753 from PFAM, PF00439 from PFAM, PF00855 from PFAM.
Probab=41.80 E-value=57 Score=25.35 Aligned_cols=54 Identities=19% Similarity=0.350 Sum_probs=34.3
Q ss_pred CCCCCCCCCCCCCCCCCCC---CCCCCCCCchhhHhhhcchhHhhHHHHHHHHHHHHHH
Q 032617 8 GGAGGPFYGGAAPYRSREG---LTTRPVAGSDEIQLRIDPVNADLDDEITGLRSQVKQL 63 (137)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~g---~~~r~~~~~~~~q~~~~~~~~eqD~~Ld~L~~~V~~L 63 (137)
=|+.|...+++-||-+.+. ..-|...+-.-+.++.+.. .-+-.|.+|++.|++.
T Consensus 67 ~g~ags~~~SPK~f~p~~~~~~Kqert~~tGsILNLNLDRs--KaeMDLkELSEtvqQq 123 (207)
T PF12064_consen 67 TGPAGSSSGSPKPFNPQASTVPKQERTPTTGSILNLNLDRS--KAEMDLKELSETVQQQ 123 (207)
T ss_pred cCCCCccCCCCCCCCCCCCCCcccccCCCCccceecccchh--hhhccHHHHHHHhhhc
Confidence 4566667777766654442 2334455556778888774 4455688999999643
No 242
>PRK10856 cytoskeletal protein RodZ; Provisional
Probab=41.72 E-value=26 Score=29.30 Aligned_cols=17 Identities=24% Similarity=0.501 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032617 116 HVVLFALFLFFILYMWS 132 (137)
Q Consensus 116 ~lil~~v~vffvly~l~ 132 (137)
++|+++++.++++|||.
T Consensus 118 ~lv~~vvl~l~~~wwwq 134 (331)
T PRK10856 118 WLVLFVVIGLTGAWWWQ 134 (331)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 44445455555556553
No 243
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=41.61 E-value=1.8e+02 Score=23.23 Aligned_cols=98 Identities=9% Similarity=0.157 Sum_probs=50.1
Q ss_pred hhHhhhcchhHhhHHHHHHHHHHHHH--------HHHHHHHHHHHHHH-HHHHHHHHHHHHH------------------
Q 032617 37 EIQLRIDPVNADLDDEITGLRSQVKQ--------LRNVAQEIHSEASF-QKDFLDQLQMTLI------------------ 89 (137)
Q Consensus 37 ~~q~~~~~~~~eqD~~Ld~L~~~V~~--------LK~va~~I~~Ev~~-Qn~lLD~l~~~~d------------------ 89 (137)
..+.++++...||+..++.+.+-+.. |++-...+.+|++. -+++-++++..-.
T Consensus 87 vtkaqq~~v~~QQ~~~f~kiRsel~S~e~sEF~~lr~e~EklkndlEk~ks~lr~ei~~~~a~~rLdLNLEkgr~~d~~~ 166 (220)
T KOG3156|consen 87 VTKAQQEKVSYQQKVDFAKIRSELVSIERSEFANLRAENEKLKNDLEKLKSSLRHEISKTTAEFRLDLNLEKGRIKDESS 166 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhceeecchhhccccchhh
Confidence 34556666677888888888776543 33333344444432 2223333332110
Q ss_pred -------HHhhhhHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHH
Q 032617 90 -------KAQAGVKNNMRRLNKSIVKHGSNHIMHVVLFALFLFFILYMWSKM 134 (137)
Q Consensus 90 -------~~~~~L~~t~~rl~~v~~~~~~~~~~~lil~~v~vffvly~l~k~ 134 (137)
...+++.+.+..++.-+...+.-.+-|++.+|..++-++..++++
T Consensus 167 ~~~l~~~e~s~kId~Ev~~lk~qi~s~K~qt~qw~~g~v~~~~Al~La~~r~ 218 (220)
T KOG3156|consen 167 SHDLQIKEISTKIDQEVTNLKTQIESVKTQTIQWLIGVVTGTSALVLAYLRL 218 (220)
T ss_pred hcchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 123666777777777777543333334455554444333333433
No 244
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=41.47 E-value=1.4e+02 Score=21.87 Aligned_cols=59 Identities=24% Similarity=0.234 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617 49 LDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 49 qD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
--+..+.+...+..+..-......||..=+.-+..++..+|.+...|..+..++...-+
T Consensus 12 a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~ 70 (143)
T PF12718_consen 12 AQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEK 70 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34556677777777777777777777766666777777777777777777666655544
No 245
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=41.31 E-value=30 Score=24.13 Aligned_cols=22 Identities=9% Similarity=0.014 Sum_probs=12.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q 032617 112 NHIMHVVLFALFLFFILYMWSK 133 (137)
Q Consensus 112 ~~~~~lil~~v~vffvly~l~k 133 (137)
...||+.+++++|++.+++.+|
T Consensus 60 e~~~f~~~~~~~v~~~~~~~y~ 81 (105)
T PF10183_consen 60 ELPFFFGFSGSLVFGGVFLAYK 81 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 3456655555556666565554
No 246
>PRK00965 tetrahydromethanopterin S-methyltransferase subunit B; Provisional
Probab=41.22 E-value=13 Score=26.02 Aligned_cols=32 Identities=19% Similarity=0.184 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 032617 70 IHSEASFQKDFLDQLQMTLIKAQAGVKNNMRR 101 (137)
Q Consensus 70 I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~r 101 (137)
|.+|++.=.++-|+|.+++|-...-|+.==+|
T Consensus 36 i~E~i~kLe~~addL~nsLdP~~~~l~S~PgR 67 (96)
T PRK00965 36 IEEEINKLEALADDLENSLDPRNPPLNSYPGR 67 (96)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCChhhcCCCC
Confidence 33444444445555555555555555443333
No 247
>PF15205 PLAC9: Placenta-specific protein 9
Probab=41.14 E-value=1e+02 Score=20.29 Aligned_cols=28 Identities=21% Similarity=0.450 Sum_probs=19.3
Q ss_pred hhHhhhcchhHhhHHHHHHHHHHHHHHH
Q 032617 37 EIQLRIDPVNADLDDEITGLRSQVKQLR 64 (137)
Q Consensus 37 ~~q~~~~~~~~eqD~~Ld~L~~~V~~LK 64 (137)
.+|.+++.+|.--+...+.|...|..|-
T Consensus 22 av~~RLdviEe~veKTVEhLeaEvk~LL 49 (74)
T PF15205_consen 22 AVHSRLDVIEETVEKTVEHLEAEVKGLL 49 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777667777777776665543
No 248
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=40.75 E-value=34 Score=25.82 Aligned_cols=18 Identities=11% Similarity=0.323 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032617 117 VVLFALFLFFILYMWSKM 134 (137)
Q Consensus 117 lil~~v~vffvly~l~k~ 134 (137)
+|-|+++++++.|+++|-
T Consensus 31 ~Inflill~lL~~fl~kP 48 (184)
T CHL00019 31 LINLSVVLGVLIYFGKGV 48 (184)
T ss_pred HHHHHHHHHHHHHHhHhH
Confidence 566777777777777764
No 249
>PHA02855 anti-apoptotic membrane protein; Provisional
Probab=40.73 E-value=1.4e+02 Score=23.04 Aligned_cols=18 Identities=17% Similarity=0.333 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032617 117 VVLFALFLFFILYMWSKM 134 (137)
Q Consensus 117 lil~~v~vffvly~l~k~ 134 (137)
.++.++.++.++|+++|.
T Consensus 157 ~~f~i~~~i~~~yY~~K~ 174 (180)
T PHA02855 157 NFFVIVGIIILLYYLLKI 174 (180)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344556667888998885
No 250
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=40.38 E-value=43 Score=27.88 Aligned_cols=77 Identities=12% Similarity=0.073 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHH
Q 032617 55 GLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLFALFLFFILYMW 131 (137)
Q Consensus 55 ~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~~~~~~~lil~~v~vffvly~l 131 (137)
.|...+..+-.+...|+-=+.+=..+++-=+.+.+....+|.....++.+|-++=+..-+...|++++.=|+-+|=-
T Consensus 165 ~lek~lgKl~~l~~k~~pm~sq~~sm~g~~~~~~~~l~~kle~~~~~i~~vn~qFkdpd~TtFVcVcI~eflslyEt 241 (323)
T KOG2825|consen 165 TLEKGLGKLLSLKNKIGPMLSQMGSMFGMEDAGADDLAGKLEELLEVIEKVNEQFKDPDCTTFVCVCIAEFLSLYET 241 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEHHHHHhHHHH
Confidence 34455555555555565555444445553344445566666666666666666432222233344555556666643
No 251
>KOG3312 consensus Predicted membrane protein [Function unknown]
Probab=40.02 E-value=1.3e+02 Score=23.04 Aligned_cols=17 Identities=18% Similarity=0.161 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032617 71 HSEASFQKDFLDQLQMT 87 (137)
Q Consensus 71 ~~Ev~~Qn~lLD~l~~~ 87 (137)
..|++.|.+-|+..-++
T Consensus 40 Ka~vdK~sKKLE~~K~~ 56 (186)
T KOG3312|consen 40 KAEVDKQSKKLEKKKEE 56 (186)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 34555555555555443
No 252
>PF00509 Hemagglutinin: Haemagglutinin; InterPro: IPR001364 Haemagglutinin (HA) is one of two main surface fusion glycoproteins embedded in the envelope of influenza viruses, the other being neuraminidase (NA). There are sixteen known HA subtypes (H1-H16) and nine NA subtypes (N1-N9), which together are used to classify influenza viruses (e.g. H5N1). The antigenic variations in HA and NA enable the virus to evade host antibodies made to previous influenza strains, accounting for recurrent influenza epidemics []. The HA glycoprotein is present in the viral membrane as a single polypeptide (HA0), which must be cleaved by the host's trypsin-like proteases to produce two peptides (HA1 and HA2) in order for the virus to be infectious. Once HA0 is cleaved, the newly exposed N-terminal of the HA2 peptide then acts to fuse the viral envelope to the cellular membrane of the host cell, which allows the viral negative-stranded RNA to infect the host cell. The type of host protease can influence the infectivity and pathogenicity of the virus. The haemagglutinin glycoprotein is a trimer containing three structurally distinct regions: a globular head consisting of anti-parallel beta-sheets that form a beta-sandwich with a jelly-roll fold (contains the receptor binding site and the HA1/HA2 cleavage site); a triple-stranded, coiled-coil, alpha-helical stalk; and a globular foot composed of anti-parallel beta-sheets [, ]. Each monomer consists of an intact HA0 polypeptide with the HA1 and HA2 regions linked by disulphide bonds. The N terminus of HA1 provides the central strand in the 5-stranded globular foot, while the rest of the HA1 chain makes its way to the 8-stranded globular head. HA2 provides two alpha helices, which form part of the triple-stranded coiled-coil that stabilises the trimer, its C terminus providing the remaining strands of the 5-stranded globular foot. This entry represents the entire haemagglutinin protein (HA0) consisting of both the HA1 and HA2 regions, as found in influenza A and B viruses.; GO: 0046789 host cell surface receptor binding, 0019064 viral envelope fusion with host membrane, 0019031 viral envelope; PDB: 2WR5_A 2IBX_A 2WR0_B 2WR1_C 2XN9_F 2WRF_I 3S11_E 3BT6_A 3SM5_E 2FK0_H ....
Probab=39.97 E-value=2e+02 Score=26.13 Aligned_cols=55 Identities=20% Similarity=0.338 Sum_probs=41.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhhHHHHHHHHHHHhh
Q 032617 48 DLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQM--TLIKAQAGVKNNMRRLNKSIVK 108 (137)
Q Consensus 48 eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~--~~d~~~~~L~~t~~rl~~v~~~ 108 (137)
|-+.+++.|.++|.. .+.|-...|.+||.-|++ ..|-.+..+++-..|+++.++.
T Consensus 400 ~ve~Ri~~l~~~v~d------~~~d~wsynaELlVlleN~~tld~~Ds~~~~L~ekvk~qL~~ 456 (550)
T PF00509_consen 400 EVEKRIDNLEKKVDD------KIADVWSYNAELLVLLENQRTLDLHDSNVNNLYEKVKRQLRE 456 (550)
T ss_dssp TTGHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGT
T ss_pred HHHHHHHHHHHhhhc------cchhhhcccHHHHHHhccccchhhhHHHHHHHHHHHHHHHhc
Confidence 345566666665543 444677788899998875 5888999999999999999985
No 253
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=39.83 E-value=2.7e+02 Score=24.73 Aligned_cols=60 Identities=27% Similarity=0.321 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617 48 DLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 48 eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
+-+....+|.+.+.+||.++-..-+|...--+.|+.+.....--+..=++-+.++.++.+
T Consensus 308 qleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ 367 (502)
T KOG0982|consen 308 QLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQE 367 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677789999999999998888888777777877777766666555556666666555
No 254
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=39.80 E-value=2.7e+02 Score=24.76 Aligned_cols=72 Identities=15% Similarity=0.188 Sum_probs=48.3
Q ss_pred hhhHhhhcchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH---HHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617 36 DEIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASF-QKD---FLDQLQMTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 36 ~~~q~~~~~~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~-Qn~---lLD~l~~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
.++..+++.++.||+...++-..--.+..++...|.+.|+. +.+ -.+.+.+....+...|..-.++++.+..
T Consensus 69 k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~~~ 144 (472)
T TIGR03752 69 KELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAGVLT 144 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 46667777888888888887776666667788888877754 222 3345556666677777777777765444
No 255
>PF14992 TMCO5: TMCO5 family
Probab=39.71 E-value=2.2e+02 Score=23.60 Aligned_cols=62 Identities=15% Similarity=0.219 Sum_probs=40.2
Q ss_pred CCCCCCCCchhhHhhhcchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032617 27 LTTRPVAGSDEIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLI 89 (137)
Q Consensus 27 ~~~r~~~~~~~~q~~~~~~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d 89 (137)
+.+++.-+...+|.-...+ ..|+.++..+.+.....+++-.+=-+++..=.+.|..|++..+
T Consensus 107 ~~~~lq~sk~~lqql~~~~-~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L~rmE~ekE 168 (280)
T PF14992_consen 107 LSQSLQFSKNKLQQLLESC-ASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKLRRMEEEKE 168 (280)
T ss_pred hhcccHHhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344433334455444444 5778888888777777888777777777766666688877444
No 256
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=39.50 E-value=1.8e+02 Score=22.54 Aligned_cols=58 Identities=10% Similarity=0.152 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617 50 DDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 50 D~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
...+......+.....++..-..|+.++..||+.-..-++.....|..+...+.+.-+
T Consensus 115 ~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~ 172 (188)
T PF05335_consen 115 KAALKAAQANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKTKK 172 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777778888888888888888888888888888888877777665543
No 257
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=39.33 E-value=39 Score=24.84 Aligned_cols=19 Identities=16% Similarity=0.364 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 032617 115 MHVVLFALFLFFILYMWSK 133 (137)
Q Consensus 115 ~~lil~~v~vffvly~l~k 133 (137)
|.++-|++++|++-+++|+
T Consensus 27 ~~~inFliL~~lL~k~l~~ 45 (156)
T CHL00118 27 LMALQFLLLMVLLNIILYK 45 (156)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455566555555555554
No 258
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=39.17 E-value=1.6e+02 Score=21.99 Aligned_cols=28 Identities=14% Similarity=0.145 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617 81 LDQLQMTLIKAQAGVKNNMRRLNKSIVK 108 (137)
Q Consensus 81 LD~l~~~~d~~~~~L~~t~~rl~~v~~~ 108 (137)
.+.+.+.+..+...+..+..+|..+-.+
T Consensus 140 ~~~~~~~~~~~~~~l~~~lekL~~fd~~ 167 (204)
T PF04740_consen 140 SSSFIDSLEKAKKKLQETLEKLRAFDQQ 167 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777777777777777776654
No 259
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=39.12 E-value=1.6e+02 Score=22.12 Aligned_cols=62 Identities=10% Similarity=0.144 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHH
Q 032617 60 VKQLRNVAQEIHS-EASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLFALFLFFILYM 130 (137)
Q Consensus 60 V~~LK~va~~I~~-Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~~~~~~~lil~~v~vffvly~ 130 (137)
...|++++..+|. .++.|.+.|+-.-..+ +......+.-.++ ...+|....|++.+|+|+.+
T Consensus 107 ~eiL~~lG~~LG~~D~e~Q~k~i~L~~~~L-------~~~~~~a~~~~~k--~~Kmy~~LGvl~Gl~lvIll 169 (170)
T TIGR02833 107 KEILLQFGKTLGESDREGQQKHINLTLEHL-------ERQLTEAEDEQKK--NEKMYRYLGVLVGLMIVLLL 169 (170)
T ss_pred HHHHHHHHHHHCcCcHHHHHHHHHHHHHHH-------HHHHHHHHHHHHh--cccHHHHHHHHHHHHHHHHh
Confidence 4445555655553 3555555544443333 3333333333332 34555556666666665543
No 260
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=39.05 E-value=31 Score=29.91 Aligned_cols=19 Identities=21% Similarity=0.550 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 032617 115 MHVVLFALFLFFILYMWSK 133 (137)
Q Consensus 115 ~~lil~~v~vffvly~l~k 133 (137)
+.+++|++++++|+|.+.+
T Consensus 42 ~~lv~~~ii~lvv~~~l~~ 60 (400)
T COG3071 42 TTLVIFLIIALVVLYLLEW 60 (400)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333
No 261
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins. It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.
Probab=38.90 E-value=7.7 Score=27.98 Aligned_cols=21 Identities=5% Similarity=0.072 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q 032617 112 NHIMHVVLFALFLFFILYMWS 132 (137)
Q Consensus 112 ~~~~~lil~~v~vffvly~l~ 132 (137)
+-+++.++-+++++++.++=+
T Consensus 155 ~i~~~si~~~~vli~~~~~Qv 175 (183)
T PF01105_consen 155 RIMWWSIIQIVVLILVSVWQV 175 (183)
T ss_dssp ---------------------
T ss_pred eEEhHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 262
>COG3630 OadG Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit [Energy production and conversion]
Probab=38.78 E-value=48 Score=22.62 Aligned_cols=10 Identities=0% Similarity=0.115 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 032617 125 FFILYMWSKM 134 (137)
Q Consensus 125 ffvly~l~k~ 134 (137)
.+++|.+-++
T Consensus 29 i~~~~~m~~~ 38 (84)
T COG3630 29 IYAMRGMGAV 38 (84)
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 263
>PF05803 Chordopox_L2: Chordopoxvirus L2 protein; InterPro: IPR008447 This family consists of several Chordopoxvirus L2 proteins.
Probab=38.63 E-value=1.3e+02 Score=20.62 Aligned_cols=33 Identities=15% Similarity=0.199 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 032617 69 EIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRR 101 (137)
Q Consensus 69 ~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~r 101 (137)
+|++|-..-.+.||-+-+..++..-.+-+-..|
T Consensus 10 ~I~~~n~~nek~lD~Ii~~ie~~~~~ilR~~~R 42 (87)
T PF05803_consen 10 SIENRNKANEKFLDCIINEIENQRPFILRPFLR 42 (87)
T ss_pred HHHHHhhccHHHHHHHHHHHHhhChHHHHHHHH
Confidence 677788888889999999888888876444333
No 264
>PLN00180 NDF6 (NDH-dependent flow 6); Provisional
Probab=38.46 E-value=53 Score=25.10 Aligned_cols=19 Identities=21% Similarity=0.372 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 032617 49 LDDEITGLRSQVKQLRNVA 67 (137)
Q Consensus 49 qD~~Ld~L~~~V~~LK~va 67 (137)
-++.++++.++|.-||.+-
T Consensus 157 REELiEEIEQkVGGLRELE 175 (180)
T PLN00180 157 REELIEEIEQKVGGLRELE 175 (180)
T ss_pred HHHHHHHHHHHhhhHHHHH
Confidence 4678899999999998764
No 265
>PRK00295 hypothetical protein; Provisional
Probab=38.30 E-value=1.1e+02 Score=19.66 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 032617 73 EASFQKDFLDQLQMTLIKAQAGV 95 (137)
Q Consensus 73 Ev~~Qn~lLD~l~~~~d~~~~~L 95 (137)
-+-.|.+.+++|++.+.+-+..+
T Consensus 13 kla~qE~tie~Ln~~v~~Qq~~I 35 (68)
T PRK00295 13 RQAFQDDTIQALNDVLVEQQRVI 35 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554444333
No 266
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=38.29 E-value=2.9e+02 Score=24.52 Aligned_cols=49 Identities=27% Similarity=0.308 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 032617 51 DEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNM 99 (137)
Q Consensus 51 ~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~ 99 (137)
+.+..+...+...-.--...-+|+..=.+++++|...+.++...-..+.
T Consensus 41 eel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~ 89 (522)
T PF05701_consen 41 EELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAE 89 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555566777777777788888777777665544443
No 267
>PF07326 DUF1466: Protein of unknown function (DUF1466); InterPro: IPR009932 This family consists of several hypothetical mammalian proteins of around 240 residues in length.
Probab=38.22 E-value=42 Score=26.95 Aligned_cols=28 Identities=18% Similarity=0.501 Sum_probs=24.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032617 47 ADLDDEITGLRSQVKQLRNVAQEIHSEA 74 (137)
Q Consensus 47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev 74 (137)
.|.|..|+-.+..|++||+++....+-|
T Consensus 197 ~e~D~DLE~V~aGI~~Lk~LSq~~DdaI 224 (233)
T PF07326_consen 197 SEFDSDLEPVSAGIQQLKHLSQEFDDAI 224 (233)
T ss_pred cccccccchhhHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999997766544
No 268
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=38.21 E-value=1.7e+02 Score=22.03 Aligned_cols=9 Identities=33% Similarity=0.504 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 032617 80 FLDQLQMTL 88 (137)
Q Consensus 80 lLD~l~~~~ 88 (137)
.|+.+...+
T Consensus 65 ~l~~~~~el 73 (180)
T PF04678_consen 65 RLEELRQEL 73 (180)
T ss_pred HHHHHHHHH
Confidence 333343333
No 269
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=38.20 E-value=1.7e+02 Score=21.94 Aligned_cols=62 Identities=8% Similarity=0.138 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHH
Q 032617 60 VKQLRNVAQEIHS-EASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLFALFLFFILYM 130 (137)
Q Consensus 60 V~~LK~va~~I~~-Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~~~~~~~lil~~v~vffvly~ 130 (137)
...|++++..+|. .++.|.+.|+-.-. .|+......+.-.++ ...+|....|++.+|+|+.+
T Consensus 108 ~eiL~~lg~~LG~~D~e~Q~k~i~L~~e-------~L~~~~~~a~~~~~k--~~Kmy~~LGvl~Gl~lvIlL 170 (171)
T PRK08307 108 IEILLQFGKTLGQSDREGQQKHIRLALE-------HLEREEEEAEEEQKK--NEKMYKYLGFLAGLLIVILL 170 (171)
T ss_pred HHHHHHHHHHHCcCcHHHHHHHHHHHHH-------HHHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHHHh
Confidence 4445555655553 35555555444433 333333333333332 34555556666666665543
No 270
>PHA02657 hypothetical protein; Provisional
Probab=37.86 E-value=55 Score=22.56 Aligned_cols=9 Identities=11% Similarity=0.327 Sum_probs=4.5
Q ss_pred HHHHHHHHH
Q 032617 126 FILYMWSKM 134 (137)
Q Consensus 126 fvly~l~k~ 134 (137)
|++.+++||
T Consensus 42 flLLYLvkW 50 (95)
T PHA02657 42 YLLIYLVDW 50 (95)
T ss_pred HHHHHHHHH
Confidence 444455554
No 271
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=37.85 E-value=1.2e+02 Score=20.14 Aligned_cols=80 Identities=10% Similarity=0.027 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCchhHHH----HHHHHHHHHHHHHH
Q 032617 57 RSQVKQLRNVAQEIHSEASFQK-DFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHV----VLFALFLFFILYMW 131 (137)
Q Consensus 57 ~~~V~~LK~va~~I~~Ev~~Qn-~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~~~~~~~l----il~~v~vffvly~l 131 (137)
.+-+..+..+.....+.....- ++-+.+...++.+..+++.....+..-.+......-=|+ +--+.+.+.+=+++
T Consensus 8 ~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~e~P~~svgiAagvG~ll 87 (94)
T PF05957_consen 8 EQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQAREQAREAAEQTEDYVRENPWQSVGIAAGVGFLL 87 (94)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHH
Confidence 3333333333333344333322 244556666666666666555555444443211111122 33444555555555
Q ss_pred HHHhc
Q 032617 132 SKMFR 136 (137)
Q Consensus 132 ~k~~~ 136 (137)
-.+++
T Consensus 88 G~Ll~ 92 (94)
T PF05957_consen 88 GLLLR 92 (94)
T ss_pred HHHHh
Confidence 55454
No 272
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=37.76 E-value=1.8e+02 Score=24.27 Aligned_cols=30 Identities=10% Similarity=0.235 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032617 55 GLRSQVKQLRNVAQEIHSEASFQKDFLDQL 84 (137)
Q Consensus 55 ~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l 84 (137)
.|.+.|..+-.++..|+.+|.+|.+++.+.
T Consensus 52 ~i~~~l~~f~~~S~~igg~V~~~a~~v~~a 81 (312)
T PF01213_consen 52 LINGPLKPFVELSKKIGGDVAEQAQLVKKA 81 (312)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 478899999999999999999999877654
No 273
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=37.67 E-value=43 Score=27.87 Aligned_cols=22 Identities=36% Similarity=0.667 Sum_probs=11.7
Q ss_pred chhHHHHHHHHH-HHHHHHHHHH
Q 032617 112 NHIMHVVLFALF-LFFILYMWSK 133 (137)
Q Consensus 112 ~~~~~lil~~v~-vffvly~l~k 133 (137)
+++-.+|++++. +++|+|+|+.
T Consensus 261 cgiaalvllil~vvliiLYiWly 283 (295)
T TIGR01478 261 YGIAALVLIILTVVLIILYIWLY 283 (295)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555444 4455566554
No 274
>PF08637 NCA2: ATP synthase regulation protein NCA2; InterPro: IPR013946 NCA2 (Nuclear Control of ATPase), is one of the two nuclear genes involved in the control of mitochondrial expression of subunits 6 and 8 of the Fo-F1 ATP synthase in Saccharomyces cerevisiae (Baker's yeast). Mutations in either NCA2 or NCA3 (IPR005556 from INTERPRO) dramatically lower the level of the co-transcript encoding subunits 6 and 8 [, ].
Probab=37.55 E-value=1.9e+02 Score=23.77 Aligned_cols=82 Identities=21% Similarity=0.314 Sum_probs=50.3
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCchhHHHHHHHH
Q 032617 51 DEITGLRSQVK--QLRNVAQEIHSEASF------QKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLFAL 122 (137)
Q Consensus 51 ~~Ld~L~~~V~--~LK~va~~I~~Ev~~------Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~~~~~~~lil~~v 122 (137)
..++.|.+.|. .|-.+-..-.+|++. ..+|+-.|=-.+.++.--+..++.-+.+++++. -+-+-++-++
T Consensus 94 ~~~~~l~~~v~~Gdlt~Vm~~YE~el~~Pik~~v~G~LvR~LLIQvQK~KVD~~~Am~gID~LLkSn---eL~F~iva~~ 170 (290)
T PF08637_consen 94 ADLEELRQQVREGDLTPVMKRYEKELKHPIKNIVRGDLVRALLIQVQKTKVDVEVAMSGIDKLLKSN---ELNFGIVAAS 170 (290)
T ss_pred chHHHHHHHHHcCCcHHHHHHHHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---hHHHHHHHHh
Confidence 44566666654 233344444555542 334566666677888999999999999999963 4444444444
Q ss_pred HHHHHHHHHHHHh
Q 032617 123 FLFFILYMWSKMF 135 (137)
Q Consensus 123 ~vffvly~l~k~~ 135 (137)
=.|+++|.+++++
T Consensus 171 Pa~li~~~~~~~l 183 (290)
T PF08637_consen 171 PAFLISYGLYRWL 183 (290)
T ss_pred HHHHHHHHHHHHH
Confidence 4555566665543
No 275
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=37.49 E-value=35 Score=20.61 Aligned_cols=17 Identities=18% Similarity=0.397 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032617 117 VVLFALFLFFILYMWSK 133 (137)
Q Consensus 117 lil~~v~vffvly~l~k 133 (137)
+.++++++.+++|.+.+
T Consensus 17 ~~~~~~Figiv~wa~~p 33 (48)
T cd01324 17 LYLALFFLGVVVWAFRP 33 (48)
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 34445555556665554
No 276
>smart00337 BCL BCL (B-Cell lymphoma); contains BH1, BH2 regions. (BH1, BH2, (BH3 (one helix only)) and not BH4(one helix only)). Involved in apoptosis regulation
Probab=37.41 E-value=1.3e+02 Score=20.38 Aligned_cols=61 Identities=8% Similarity=-0.006 Sum_probs=26.8
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHhhcCCchhHHHHHHHHHHHHHHHH
Q 032617 70 IHSEASF-QKDFLDQLQMTLIKAQAGVKNNMRRL-NKSIVKHGSNHIMHVVLFALFLFFILYM 130 (137)
Q Consensus 70 I~~Ev~~-Qn~lLD~l~~~~d~~~~~L~~t~~rl-~~v~~~~~~~~~~~lil~~v~vffvly~ 130 (137)
+++|++. +...+.+|...++-+...-..+...+ ..+++.+..++==++.+|++...+..+.
T Consensus 4 ~~dele~~~~~~f~~~~~~l~~~~~~~~~~f~~Va~~lf~dg~inWGRIval~~F~~~la~~~ 66 (100)
T smart00337 4 VGDELNKRYERAFSSFSAQLHVTPGTAIELFGEVATELFSDGNINWGRVVALLSFGGALAVKL 66 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHH
Confidence 4555553 55577777766543332222333332 3344432122222344444444444443
No 277
>PF00672 HAMP: HAMP domain; InterPro: IPR003660 The HAMP linker domain (present in Histidine kinases, Adenyl cyclases, Methyl-accepting proteins and Phosphatases) is an approximately 50-amino acid alpha-helical region. It is found in bacterial sensor and chemotaxis proteins and in eukaryotic histidine kinases. The bacterial proteins are usually integral membrane proteins and part of a two-component signal transduction pathway. One or several copies of the HAMP domain can be found in association with other domains, such as the histidine kinase domain, the bacterial chemotaxis sensory transducer domain, the PAS repeat, the EAL domain, the GGDEF domain, the protein phosphatase 2C-like domain, the guanylate cyclase domain, or the response regulatory domain. It has been suggested that the HAMP domain possesses a role of regulating the phosphorylation or methylation of homodimeric receptors by transmitting the conformational changes in periplasmic ligand-binding domains to cytoplasmic signalling kinase and methyl-acceptor domains.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016021 integral to membrane; PDB: 3PJX_A 3PJW_A 3ZX6_B 2Y20_B 2Y0Q_D 2Y21_H 3ZRW_C 2L7H_B 2LFS_B 2L7I_B ....
Probab=37.38 E-value=52 Score=19.91 Aligned_cols=10 Identities=0% Similarity=0.451 Sum_probs=3.1
Q ss_pred HHHHHHHHHH
Q 032617 124 LFFILYMWSK 133 (137)
Q Consensus 124 vffvly~l~k 133 (137)
.+++.|++.+
T Consensus 12 ~~~~~~~~~~ 21 (70)
T PF00672_consen 12 SLLLAWLLAR 21 (70)
T ss_dssp HHHHHHH--H
T ss_pred HHHHHHHHHH
Confidence 3334444433
No 278
>COG5278 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=37.32 E-value=2e+02 Score=22.57 Aligned_cols=64 Identities=14% Similarity=0.173 Sum_probs=34.6
Q ss_pred hhhHhhhcchhHhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhHHHHHH
Q 032617 36 DEIQLRIDPVNADLDDEITGLRSQVKQLRN----VAQEIHSEASFQK-DFLDQLQMTLIKAQAGVKNNMRR 101 (137)
Q Consensus 36 ~~~q~~~~~~~~eqD~~Ld~L~~~V~~LK~----va~~I~~Ev~~Qn-~lLD~l~~~~d~~~~~L~~t~~r 101 (137)
++.+...+.++.-+...+.++...+.--|. -+..|-.. +|. .++|.+..-+....+.-+.....
T Consensus 104 p~~~~~l~~l~~~i~~~l~~~~~~i~~~r~~~~eaa~~ii~s--~~Gk~lm~~ir~~l~~i~~~e~~~l~~ 172 (207)
T COG5278 104 PELLESLDDLEPLIQWKLAEADETIPLRRDGKLEAAVQIISS--DQGKVLMDAIRQYLQEIEEEENERLTQ 172 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666667777777777666552 22222221 122 26666666665555554444444
No 279
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=37.24 E-value=1.8e+02 Score=21.82 Aligned_cols=61 Identities=13% Similarity=0.217 Sum_probs=41.7
Q ss_pred hcchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617 42 IDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK 108 (137)
Q Consensus 42 ~~~~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~ 108 (137)
++.+..+|+++++.|...+..-| .+.|..|++.- +.++.+-+-+.+ .+..+.+-..++...
T Consensus 5 ~~~~~~~~~~~~~~Le~elk~~~--~n~~kesir~~---~~~l~~~~~~~G-d~~~A~k~y~~~~~~ 65 (177)
T PF10602_consen 5 IEETKAKNAEELEKLEAELKDAK--SNLGKESIRMA---LEDLADHYCKIG-DLEEALKAYSRARDY 65 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--hccchHHHHHH---HHHHHHHHHHhh-hHHHHHHHHHHHhhh
Confidence 35567899999999999998877 56667777654 445555555554 456666666666554
No 280
>PRK00736 hypothetical protein; Provisional
Probab=37.18 E-value=1.1e+02 Score=19.57 Aligned_cols=31 Identities=16% Similarity=0.231 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 032617 73 EASFQKDFLDQLQMTLIKAQAGVKNNMRRLN 103 (137)
Q Consensus 73 Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~ 103 (137)
-+-.|.+.+++|++.+.+-+..|..-.+++.
T Consensus 13 klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~ 43 (68)
T PRK00736 13 RVAEQEKTIEELSDQLAEQWKTVEQMRKKLD 43 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555544433333333
No 281
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=36.94 E-value=61 Score=22.70 Aligned_cols=23 Identities=0% Similarity=-0.190 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Q 032617 113 HIMHVVLFALFLFFILYMWSKMF 135 (137)
Q Consensus 113 ~~~~lil~~v~vffvly~l~k~~ 135 (137)
.+|.++++++.++.-+|..+++.
T Consensus 74 ~~~tl~~lllGv~~G~~n~w~wi 96 (100)
T TIGR02230 74 FSWTLTMLIVGVVIGCLNAWHWV 96 (100)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666665553
No 282
>PTZ00370 STEVOR; Provisional
Probab=36.91 E-value=45 Score=27.78 Aligned_cols=22 Identities=36% Similarity=0.680 Sum_probs=11.1
Q ss_pred chhHHHHHHHHH-HHHHHHHHHH
Q 032617 112 NHIMHVVLFALF-LFFILYMWSK 133 (137)
Q Consensus 112 ~~~~~lil~~v~-vffvly~l~k 133 (137)
+++-.+|++++. +++|+|.|+.
T Consensus 257 ygiaalvllil~vvliilYiwly 279 (296)
T PTZ00370 257 YGIAALVLLILAVVLIILYIWLY 279 (296)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445554443 4455565554
No 283
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=36.70 E-value=1.5e+02 Score=20.90 Aligned_cols=47 Identities=15% Similarity=0.255 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhh
Q 032617 48 DLDDEITGLRSQVKQLRNVAQEIH---SEASFQKDFLDQLQMTLIKAQAGV 95 (137)
Q Consensus 48 eqD~~Ld~L~~~V~~LK~va~~I~---~Ev~~Qn~lLD~l~~~~d~~~~~L 95 (137)
-+|++|..+..++..+ ..+..|. +.|+.|.+-+..+...+...+..|
T Consensus 34 ~~~q~L~kiE~~~~~l-~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL 83 (102)
T PF01519_consen 34 SNNQRLTKIENKLDQL-AQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTL 83 (102)
T ss_dssp -HTTB-BHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666644 2222222 344445544554444444433333
No 284
>COG4393 Predicted membrane protein [Function unknown]
Probab=36.39 E-value=88 Score=26.89 Aligned_cols=42 Identities=14% Similarity=0.127 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhc
Q 032617 95 VKNNMRRLNKSIVKHGSNHIMHVVLFALFLFFILYMWSKMFR 136 (137)
Q Consensus 95 L~~t~~rl~~v~~~~~~~~~~~lil~~v~vffvly~l~k~~~ 136 (137)
++-+...+.-|.+......+...|.+.++++.++.+++|..|
T Consensus 181 l~~tkslvsfV~k~~n~~~f~iyi~~~ilaiifl~flf~~sr 222 (405)
T COG4393 181 LKLTKSLVSFVAKFENKSTFYIYILFTILAIIFLLFLFKDSR 222 (405)
T ss_pred HHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHhHHHH
Confidence 344455556666643333334446666666666666666665
No 285
>PF07466 DUF1517: Protein of unknown function (DUF1517); InterPro: IPR010903 This family consists of several hypothetical glycine rich plant and bacterial proteins of around 300 residues in length. The function of this family is unknown.
Probab=36.03 E-value=34 Score=28.19 Aligned_cols=12 Identities=25% Similarity=0.526 Sum_probs=8.0
Q ss_pred CCCCCCCCCCCC
Q 032617 7 RGGAGGPFYGGA 18 (137)
Q Consensus 7 ~~~~~~~~~~~~ 18 (137)
-|.-||+.|+++
T Consensus 5 GGR~GG~SFssp 16 (289)
T PF07466_consen 5 GGRMGGGSFSSP 16 (289)
T ss_pred CCCcCCCCCCCC
Confidence 466777777754
No 286
>PRK09039 hypothetical protein; Validated
Probab=36.00 E-value=2.6e+02 Score=23.41 Aligned_cols=55 Identities=11% Similarity=0.079 Sum_probs=45.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 032617 47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRR 101 (137)
Q Consensus 47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~r 101 (137)
.|...++..|.+.|..||..=..|..+++..+.-..+....++.....|..+..+
T Consensus 133 se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 133 ARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667778888888888888877888888888888888888888888888888743
No 287
>COG2034 Predicted membrane protein [Function unknown]
Probab=35.97 E-value=67 Score=21.95 Aligned_cols=25 Identities=12% Similarity=0.368 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcC
Q 032617 113 HIMHVVLFALFLFFILYMWSKMFRR 137 (137)
Q Consensus 113 ~~~~lil~~v~vffvly~l~k~~~~ 137 (137)
.+..+..++.+++.++|+++.+++|
T Consensus 61 ~~~~~~~vlalilmil~~~l~~~~r 85 (85)
T COG2034 61 RMAIISVVLALILMILWLLLFLLGR 85 (85)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhcC
Confidence 4444555555566666666655443
No 288
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=35.85 E-value=1.8e+02 Score=21.39 Aligned_cols=58 Identities=10% Similarity=0.160 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 032617 49 LDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSI 106 (137)
Q Consensus 49 qD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~ 106 (137)
..+.+..+...+..+.....+|.+-+++|...+.++...+.........+...+..+.
T Consensus 133 ~~~~l~~i~~~~~~i~~~i~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~~~~~~~~~~ 190 (213)
T PF00015_consen 133 TSESLEEIAESVEEISDSIEEISESAEEQSESIEQINESIEEISEISEQISASSEEIA 190 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhhhHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555556655555555555555555555544444443
No 289
>PHA02682 ORF080 virion core protein; Provisional
Probab=35.62 E-value=1.8e+02 Score=23.27 Aligned_cols=40 Identities=10% Similarity=0.066 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617 69 EIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK 108 (137)
Q Consensus 69 ~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~ 108 (137)
+|-+-|++-|.--.+|..+++++.+.-..+...|++++..
T Consensus 219 diadsvrdl~aeS~~LtrDIE~AKstTq~AIdDLRrLl~~ 258 (280)
T PHA02682 219 DIADSVRDLNAESLSLTRDIENAKSTTQAAIDDLRRLLTG 258 (280)
T ss_pred HHHHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3444444333333333344444444445555666666653
No 290
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=35.55 E-value=1.6e+02 Score=20.82 Aligned_cols=70 Identities=19% Similarity=0.143 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH---------HHhhcCCchhHHHHHHHHHHHHHHHHH
Q 032617 62 QLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNK---------SIVKHGSNHIMHVVLFALFLFFILYMW 131 (137)
Q Consensus 62 ~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~---------v~~~~~~~~~~~lil~~v~vffvly~l 131 (137)
+.|-||..|..-+.+-.+---.=..+.|++..+..++..+-.. .........+-|+.+++--++|++|++
T Consensus 24 QTKLIAqGIeKGIa~YKKQqK~KaRe~DK~rKk~~k~k~~~~~~~~~~~~~~~~~~~~~~~LPW~LL~lSW~gF~~Y~~ 102 (103)
T PF11169_consen 24 QTKLIAQGIEKGIAEYKKQQKEKAREADKARKKQQKAKQRETAQEEEEPTTEISSQSRSSWLPWGLLVLSWIGFIAYIF 102 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccccccccccccccccccccccchhHHHHHHHHHHHHHHHH
Confidence 3455566666555555444444445555555444444433210 011112233334444444466777775
No 291
>PF13865 FoP_duplication: C-terminal duplication domain of Friend of PRMT1
Probab=35.48 E-value=1.3e+02 Score=19.61 Aligned_cols=13 Identities=15% Similarity=0.516 Sum_probs=7.1
Q ss_pred CCCCCchhhHhhh
Q 032617 30 RPVAGSDEIQLRI 42 (137)
Q Consensus 30 r~~~~~~~~q~~~ 42 (137)
+|..+.++|..++
T Consensus 37 ~~~kT~EeLDaEL 49 (74)
T PF13865_consen 37 KPPKTAEELDAEL 49 (74)
T ss_pred CCCCCHHHHHHHH
Confidence 5555666665433
No 292
>PRK00404 tatB sec-independent translocase; Provisional
Probab=35.38 E-value=1.9e+02 Score=21.56 Aligned_cols=39 Identities=13% Similarity=0.116 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032617 52 EITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKA 91 (137)
Q Consensus 52 ~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~ 91 (137)
..-.++..+.++|....++.+|++..-.+ |++...++..
T Consensus 28 laR~lG~~i~~~rr~~~~~k~ei~~E~~~-~elr~~l~~~ 66 (141)
T PRK00404 28 AARTAGLWIGRLKRSFNAIKQEVEREIGA-DEIRRQLHNE 66 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCH-HHHHHHHHHH
Confidence 34567778888999999999988887654 7777777763
No 293
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=35.20 E-value=70 Score=18.83 Aligned_cols=21 Identities=10% Similarity=-0.016 Sum_probs=12.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 032617 113 HIMHVVLFALFLFFILYMWSK 133 (137)
Q Consensus 113 ~~~~lil~~v~vffvly~l~k 133 (137)
+.+|.+.+++++.++++.+.+
T Consensus 8 W~sYg~t~~~l~~l~~~~~~~ 28 (46)
T PF04995_consen 8 WSSYGVTALVLAGLIVWSLRR 28 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666554
No 294
>PF06459 RR_TM4-6: Ryanodine Receptor TM 4-6; InterPro: IPR009460 The release of Ca2+ ions from intracellular stores is a key step in a wide variety of cellular functions. In striated muscle, the release of Ca2+ from the sarcoplasmic reticulum (SR) leads to muscle contraction. Ca2+ release occurs through large, high-conductance Ca2+ release channels, also known as ryanodine receptors (RyRs) because they bind the plant alkaloid ryanodine with high affinity and specificity []. This region covers TM regions 4-6 of the ryanodine receptor 1 family.; GO: 0005219 ryanodine-sensitive calcium-release channel activity, 0006874 cellular calcium ion homeostasis, 0016021 integral to membrane
Probab=35.18 E-value=1.3e+02 Score=24.67 Aligned_cols=47 Identities=9% Similarity=0.130 Sum_probs=30.2
Q ss_pred HHHHhhhhHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHh
Q 032617 88 LIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLFALFLFFILYMWSKMF 135 (137)
Q Consensus 88 ~d~~~~~L~~t~~rl~~v~~~~~~~~~~~lil~~v~vffvly~l~k~~ 135 (137)
+......|..-..|+-.++-+. ...+=|+.+|+.+++=+|.+++|+.
T Consensus 148 ~~~~~~~l~~y~~k~lnylARN-FYNlr~lALflAFaINFILLFYKVs 194 (274)
T PF06459_consen 148 ESQFWKELEVYRTKFLNYLARN-FYNLRFLALFLAFAINFILLFYKVS 194 (274)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334445666777777777753 5566677777777766666777763
No 295
>PRK09793 methyl-accepting protein IV; Provisional
Probab=35.18 E-value=3.1e+02 Score=23.95 Aligned_cols=49 Identities=14% Similarity=0.136 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 032617 55 GLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLN 103 (137)
Q Consensus 55 ~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~ 103 (137)
.+...+..+...+.++....++|..-+.++...++.....+........
T Consensus 272 ~~~~~~~eia~~~~~ls~~~e~qa~~~~~~~~s~~~~~~~~~~~~~~~~ 320 (533)
T PRK09793 272 EMHIGIAEIVAGNNDLSSRTEQQAASLAQTAASMEQLTATVGQNADNAR 320 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444455555556665555555555555555444444333
No 296
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=35.15 E-value=1.9e+02 Score=22.58 Aligned_cols=59 Identities=8% Similarity=0.191 Sum_probs=36.2
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617 50 DDEITGLRSQV-KQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK 108 (137)
Q Consensus 50 D~~Ld~L~~~V-~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~ 108 (137)
++.|+.+...- ..+..--..+.++++.-++-+++++..++.-..+|..-..+|..++.+
T Consensus 177 ~~~l~~~~~~~~G~i~~~~~~l~~~~~~~~~~i~~~~~rl~~~~~~l~~qf~~me~~i~~ 236 (239)
T PF07195_consen 177 NDYLDSYTGSSTGSITSRIDSLNSQIKSLDKQIEDLEERLESKEERLRKQFSAMESLISQ 236 (239)
T ss_pred HHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344333333 455555566666777777777777777777777777766666666553
No 297
>PTZ00464 SNF-7-like protein; Provisional
Probab=35.13 E-value=1.6e+02 Score=23.20 Aligned_cols=36 Identities=14% Similarity=0.278 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032617 52 EITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLI 89 (137)
Q Consensus 52 ~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d 89 (137)
.++.|......||.+-..|. ++.=.+++|++.+.++
T Consensus 103 vv~amk~g~kaLK~~~k~i~--id~Vd~l~Dei~E~~e 138 (211)
T PTZ00464 103 QVDAMKQAAKTLKKQFKKLN--VDKVEDLQDELADLYE 138 (211)
T ss_pred HHHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHH
Confidence 34555555555555544441 3333334444444443
No 298
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=34.80 E-value=35 Score=26.53 Aligned_cols=23 Identities=26% Similarity=0.298 Sum_probs=17.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHH
Q 032617 111 SNHIMHVVLFALFLFFILYMWSK 133 (137)
Q Consensus 111 ~~~~~~lil~~v~vffvly~l~k 133 (137)
+-+=++|++.++.|+|++|-++|
T Consensus 163 FiGGIVL~LGv~aI~ff~~KF~k 185 (186)
T PF05283_consen 163 FIGGIVLTLGVLAIIFFLYKFCK 185 (186)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcc
Confidence 33446688888888888888877
No 299
>PF09155 DUF1940: Domain of unknown function (DUF1940); InterPro: IPR015238 This family adopts a secondary structure consisting of six alpha helices, with four long helices (alpha1, alpha2, alpha5, alpha6) forming a left-handed, antiparallel alpha helical bundle. The function of this family of archaeal hypothetical proteins has not, as yet, been defined []. ; PDB: 1NIG_A.
Probab=34.77 E-value=1.8e+02 Score=21.30 Aligned_cols=63 Identities=17% Similarity=0.182 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh--------h--cCCchhHHHHHHHHHHHHHHHHHHHH
Q 032617 72 SEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV--------K--HGSNHIMHVVLFALFLFFILYMWSKM 134 (137)
Q Consensus 72 ~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~--------~--~~~~~~~~lil~~v~vffvly~l~k~ 134 (137)
.|.++--++||-+-+++-.-..+|+...+|=-+... + +++++..|+++..--+=.-+||+.++
T Consensus 40 ~E~rE~lDilDtv~n~LyD~e~~Lnd~~~K~Ln~teE~W~DIkEK~nnGnk~s~Ymf~A~sh~~~Av~~~~~m 112 (143)
T PF09155_consen 40 PETRECLDILDTVYNSLYDKESKLNDFQEKRLNFTEESWYDIKEKMNNGNKWSLYMFLARSHLDLAVYWITDM 112 (143)
T ss_dssp HHHHHHHHHHHHHHHTTT-------HHHHHHHHH-------HHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhccCchhHHhHHHHHhcCCchHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666667777777776667777766554333221 1 34566777777777777888998886
No 300
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=34.70 E-value=53 Score=19.72 Aligned_cols=19 Identities=16% Similarity=0.398 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 032617 118 VLFALFLFFILYMWSKMFR 136 (137)
Q Consensus 118 il~~v~vffvly~l~k~~~ 136 (137)
++.+++++++=|++.|+.+
T Consensus 18 iv~AilIl~vG~~va~~v~ 36 (53)
T PF05552_consen 18 IVGAILILIVGWWVAKFVR 36 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5566667777777777644
No 301
>PRK13842 conjugal transfer protein TrbJ; Provisional
Probab=34.55 E-value=2.4e+02 Score=23.18 Aligned_cols=38 Identities=13% Similarity=0.336 Sum_probs=24.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032617 47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQL 84 (137)
Q Consensus 47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l 84 (137)
..--+.++.+...+..+++++..|.+|+..=..++.++
T Consensus 51 ~~a~r~leQInnQi~ql~q~~~QlQnQ~q~y~Nm~rNl 88 (267)
T PRK13842 51 SLVGQSAEQINNQITQISQLAEQIQNQLNIYQNMLQNT 88 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456677777778888777877777776433343333
No 302
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.53 E-value=2.6e+02 Score=22.96 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhH
Q 032617 72 SEASFQKDFLDQLQMTLIKAQAGVK 96 (137)
Q Consensus 72 ~Ev~~Qn~lLD~l~~~~d~~~~~L~ 96 (137)
.|+++-+.-|..+....+.+.+.+.
T Consensus 73 ~~i~~~~~eik~l~~eI~~~~~~I~ 97 (265)
T COG3883 73 KEIDQSKAEIKKLQKEIAELKENIV 97 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444333
No 303
>PF14842 FliG_N: FliG N-terminal domain; PDB: 3HJL_A 3AJC_A 3USY_B.
Probab=34.47 E-value=1.5e+02 Score=20.37 Aligned_cols=55 Identities=15% Similarity=0.167 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhc
Q 032617 49 LDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKH 109 (137)
Q Consensus 49 qD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~ 109 (137)
.++.+..|+..+.+|+.+..+.-+ ..|++..+.+......+......+++++.++
T Consensus 31 ~~~ei~~i~~~ma~l~~v~~~~~~------~Vl~EF~~~~~~~~~~~~gg~~~~~~lL~~a 85 (108)
T PF14842_consen 31 DEEEIERISREMAKLGSVSPEEVE------EVLEEFYDEIRAQGGIVSGGRDFARRLLEKA 85 (108)
T ss_dssp -HHHHHHHHHHHHT-----HHHHH------HHHHHHHHHHHHTT---S-HHHHHHH-HHHH
T ss_pred CHHHHHHHHHHHHccCCCCHHHHH------HHHHHHHHHHHHccccccChHHHHHHHHHHH
Confidence 477889999999999999865544 4666677666666666666666666666543
No 304
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.32 E-value=1.7e+02 Score=23.29 Aligned_cols=11 Identities=9% Similarity=0.419 Sum_probs=6.5
Q ss_pred HHHHHHHHHHH
Q 032617 80 FLDQLQMTLIK 90 (137)
Q Consensus 80 lLD~l~~~~d~ 90 (137)
|+++++.-+|+
T Consensus 141 M~eNIekvldR 151 (217)
T KOG0859|consen 141 MMENIEKVLDR 151 (217)
T ss_pred HHHHHHHHHhc
Confidence 66666655554
No 305
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=34.19 E-value=1.3e+02 Score=19.25 Aligned_cols=15 Identities=7% Similarity=0.375 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 032617 50 DDEITGLRSQVKQLR 64 (137)
Q Consensus 50 D~~Ld~L~~~V~~LK 64 (137)
+..++.+...+..+.
T Consensus 12 e~~l~~~~~~i~~lE 26 (71)
T PF10779_consen 12 ETKLDNHEERIDKLE 26 (71)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444433
No 306
>TIGR01410 tatB twin arginine-targeting protein translocase TatB. This model represents the TatB protein of a Sec-independent system for transporting folded proteins, often with a bound redox cofactor, across the bacterial inner membrane. TatC is the multiple membrane spanning component. TatB, like the related TatA/E proteins, appears to span the membrane one time. The tat system recognizes proteins with an elongated signal sequence containing a conserved R-R in a motif approximated by RRxFLK N-terminal to the transmembrane helix. TIGRFAMs model TIGR01409 describes this twin-Arg signal sequence. A similar system, termed Delta-pH-dependent transport, operates on chloroplast-encoded proteins.
Probab=34.06 E-value=1.4e+02 Score=19.77 Aligned_cols=37 Identities=22% Similarity=0.327 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032617 52 EITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLI 89 (137)
Q Consensus 52 ~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d 89 (137)
-.-.++..++.+|..+.++.+|+++.-. ++++.+.+.
T Consensus 27 ~~r~~G~~i~~~r~~~~~~~~~~~~e~~-~~el~~~~~ 63 (80)
T TIGR01410 27 AIRAVGKFVRRLRGMASDVKNELDEELK-AQELDEQLK 63 (80)
T ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHhc-hHhHHHHHH
Confidence 4556788889999999999998877655 556655553
No 307
>PRK02119 hypothetical protein; Provisional
Probab=34.00 E-value=1.4e+02 Score=19.51 Aligned_cols=33 Identities=24% Similarity=0.399 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 032617 71 HSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLN 103 (137)
Q Consensus 71 ~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~ 103 (137)
..-+..|.+.+++|++.+..-+..+..-.+.++
T Consensus 15 E~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~ 47 (73)
T PRK02119 15 EMKIAFQENLLEELNQALIEQQFVIDKMQVQLR 47 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666666666666655544433333333
No 308
>PRK04325 hypothetical protein; Provisional
Probab=33.94 E-value=1.4e+02 Score=19.52 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 032617 71 HSEASFQKDFLDQLQMTLIKAQA 93 (137)
Q Consensus 71 ~~Ev~~Qn~lLD~l~~~~d~~~~ 93 (137)
..-+-.|.+.+++|++.+..-+.
T Consensus 15 E~klAfQE~tIe~LN~vv~~Qq~ 37 (74)
T PRK04325 15 EIQLAFQEDLIDGLNATVARQQQ 37 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555543
No 309
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=33.93 E-value=2.8e+02 Score=23.06 Aligned_cols=61 Identities=5% Similarity=0.125 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617 48 DLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK 108 (137)
Q Consensus 48 eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~ 108 (137)
+..+.|......+..+..-=..+..+.+....=...+...+..+..+|.++.+=+..+...
T Consensus 232 ~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E 292 (344)
T PF12777_consen 232 EAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGE 292 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcch
Confidence 3444455555555555443344555555555556777778888888888887766666553
No 310
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=33.85 E-value=1.4e+02 Score=19.63 Aligned_cols=58 Identities=14% Similarity=0.156 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHH-HHHHHH----HHHHHHhhhhHHHHHHHHHHHhh
Q 032617 51 DEITGLRSQVKQL----RNVAQEIHSEASFQKD-FLDQLQ----MTLIKAQAGVKNNMRRLNKSIVK 108 (137)
Q Consensus 51 ~~Ld~L~~~V~~L----K~va~~I~~Ev~~Qn~-lLD~l~----~~~d~~~~~L~~t~~rl~~v~~~ 108 (137)
.-+|.++..++.. +....++..-++.+-. .|.+|+ +.||-....|.++..|+..+-.+
T Consensus 6 ~~~d~~~~~~~~~~~~~~~~~~e~e~~~r~~l~~~l~kldlVtREEFd~q~~~L~~~r~kl~~LEar 72 (79)
T PF04380_consen 6 KIFDDLAKQISEALPAAQGPREEIEKNIRARLQSALSKLDLVTREEFDAQKAVLARTREKLEALEAR 72 (79)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555444 4444444444443322 566665 88999999999999998877653
No 311
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=33.81 E-value=55 Score=24.25 Aligned_cols=12 Identities=17% Similarity=0.119 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHH
Q 032617 122 LFLFFILYMWSK 133 (137)
Q Consensus 122 v~vffvly~l~k 133 (137)
+++.+++|+++|
T Consensus 130 l~i~~giy~~~r 141 (145)
T PF10661_consen 130 LAICGGIYVVLR 141 (145)
T ss_pred HHHHHHHHHHHH
Confidence 444455665554
No 312
>PF11057 Cortexin: Cortexin of kidney; InterPro: IPR020066 Cortexin is a neuron-specific, 82-residue membrane protein which is found especially in vertebrate brain cortex tissue. It may mediate extracellular or intracellular signalling of cortical neurons during forebrain development. Cortexin is present at significant levels in the foetal brain, suggesting that it may be important to neurons of both the developing and adult cerebral cortex. Cortexin has a conserved single membrane-spanning region in the middle of each sequence []. In humans, there is selective expression of Cortexin 3 (CTXN3) in the kidney as well as the brain []. This entry contains Cortexins 1, 2 and 3.; GO: 0031224 intrinsic to membrane
Probab=33.79 E-value=45 Score=22.43 Aligned_cols=11 Identities=27% Similarity=0.573 Sum_probs=4.8
Q ss_pred HHHHHHHHHhc
Q 032617 126 FILYMWSKMFR 136 (137)
Q Consensus 126 fvly~l~k~~~ 136 (137)
|+..+++|-||
T Consensus 40 fL~~liVRCfr 50 (81)
T PF11057_consen 40 FLGLLIVRCFR 50 (81)
T ss_pred HHHHHHHHHHH
Confidence 33344444444
No 313
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=33.38 E-value=2e+02 Score=21.32 Aligned_cols=60 Identities=12% Similarity=0.288 Sum_probs=33.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 032617 47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSI 106 (137)
Q Consensus 47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~ 106 (137)
.+-+++++.+.+.+..+..--....++...-...+......++......+...+.+..+.
T Consensus 91 ~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 91 QQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555544455555554445555666666666666666666665555
No 314
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=33.31 E-value=2.9e+02 Score=23.05 Aligned_cols=56 Identities=16% Similarity=0.255 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hhhHHHHHHHHHHHh
Q 032617 52 EITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQ-------AGVKNNMRRLNKSIV 107 (137)
Q Consensus 52 ~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~-------~~L~~t~~rl~~v~~ 107 (137)
++..|.-.+...|..+..+...-++=++.|..|++++++.+ .+|+.+.+++.++-+
T Consensus 237 ria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k 299 (330)
T KOG2991|consen 237 RIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKK 299 (330)
T ss_pred cHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 46677778888888887777666666777888888888754 567777777777665
No 315
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=33.30 E-value=2.1e+02 Score=21.45 Aligned_cols=57 Identities=11% Similarity=0.162 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 032617 49 LDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKS 105 (137)
Q Consensus 49 qD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v 105 (137)
+-..+..+...+..+......+.+.+..-....+++...+......+..+.+.+..+
T Consensus 30 ~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 86 (262)
T smart00283 30 LSASIEEVAANADEIAATAQSAAEAAEEGREAVEDAITAMDQIREVVEEAVSAVEEL 86 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444333333333344444433333344433333333
No 316
>PRK00846 hypothetical protein; Provisional
Probab=33.30 E-value=1.5e+02 Score=19.78 Aligned_cols=32 Identities=25% Similarity=0.250 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 032617 74 ASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKS 105 (137)
Q Consensus 74 v~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v 105 (137)
+--|.++++.|++.+.+.+..+..-.+.++.+
T Consensus 22 lAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L 53 (77)
T PRK00846 22 LSFQEQALTELSEALADARLTGARNAELIRHL 53 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555544444444444443333
No 317
>PRK10132 hypothetical protein; Provisional
Probab=33.13 E-value=1.7e+02 Score=20.54 Aligned_cols=29 Identities=3% Similarity=0.103 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhhcCCchhHHHHHHHHHH
Q 032617 96 KNNMRRLNKSIVKHGSNHIMHVVLFALFL 124 (137)
Q Consensus 96 ~~t~~rl~~v~~~~~~~~~~~lil~~v~v 124 (137)
+.+............+..+-+...+.+++
T Consensus 72 ~~a~~~~~~~V~~~Pw~svgiaagvG~ll 100 (108)
T PRK10132 72 RDAVGCADTFVRERPWCSVGTAAAVGIFI 100 (108)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 33334444455544344444443333333
No 318
>PF11031 Phage_holin_T: Bacteriophage T holin; InterPro: IPR020982 One mechanism by which bacteriophages effect host lysis begins with the accumulation of a holin in the host membrane and an endolysin in the host cytoplasm during late gene expression. At an allele-specific time, the holin disrupts the membrane, thus allowing the endolysin to enter the periplasm and degrade the cell wall peptidoglycan. This entry represents a specific holin, known as T, which has an unusual C-terminal periplasmic domain thought to be involved in the transduction of environmental information for the real-time control of lysis timing [].
Probab=33.12 E-value=61 Score=25.74 Aligned_cols=22 Identities=5% Similarity=0.095 Sum_probs=12.4
Q ss_pred hhHHHHHHHHHHHhhcCCchhH
Q 032617 94 GVKNNMRRLNKSIVKHGSNHIM 115 (137)
Q Consensus 94 ~L~~t~~rl~~v~~~~~~~~~~ 115 (137)
++..-.+-|.++++...++..+
T Consensus 8 ~~~~l~~lLdrlfkd~~tgk~L 29 (216)
T PF11031_consen 8 KSDILFGLLDRLFKDNKTGKVL 29 (216)
T ss_pred hHHHHHHHHHHHHhccCcHHHH
Confidence 4445566677777754444433
No 319
>PHA03332 membrane glycoprotein; Provisional
Probab=32.60 E-value=2.1e+02 Score=28.39 Aligned_cols=45 Identities=7% Similarity=0.152 Sum_probs=31.5
Q ss_pred HhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032617 47 ADLDDEITGLRSQVKQLRN----VAQEIHSEASFQKDFLDQLQMTLIKA 91 (137)
Q Consensus 47 ~eqD~~Ld~L~~~V~~LK~----va~~I~~Ev~~Qn~lLD~l~~~~d~~ 91 (137)
...++.++.+++.+..+.+ ++..+.+-+++=|.-+|+|+++++.-
T Consensus 901 g~tNaAV~~lsDai~klGnti~kisatl~~nI~avNgRIs~Led~VN~r 949 (1328)
T PHA03332 901 GGLNARVDKTSDVITKLGDTIAKISATLDNNIRAVNGRVSDLEDQVNLR 949 (1328)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHhcccHHHHHHHHHHH
Confidence 5567777777777776654 66777777777777777777665543
No 320
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=32.22 E-value=83 Score=19.99 Aligned_cols=20 Identities=5% Similarity=0.223 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032617 115 MHVVLFALFLFFILYMWSKM 134 (137)
Q Consensus 115 ~~lil~~v~vffvly~l~k~ 134 (137)
|.++++++++++++-.++|.
T Consensus 10 ~~Vi~l~vl~~~~Ftl~IRr 29 (58)
T PF13314_consen 10 ILVIILIVLFGASFTLFIRR 29 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444443
No 321
>PF07245 Phlebovirus_G2: Phlebovirus glycoprotein G2; InterPro: IPR009878 This domain is found in several Phlebovirus glycoprotein G2 sequences. Members of the Bunyaviridae family acquire an envelope by budding through the lipid bilayer of the Golgi complex. The budding compartment is thought to be determined by the accumulation of the two heterodimeric membrane glycoproteins G1 and G2 in the Golgi [].
Probab=32.13 E-value=50 Score=29.45 Aligned_cols=18 Identities=11% Similarity=0.270 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032617 115 MHVVLFALFLFFILYMWS 132 (137)
Q Consensus 115 ~~lil~~v~vffvly~l~ 132 (137)
+++++|+++.|+++|+++
T Consensus 471 ~~Il~~l~i~~~~~~~~i 488 (507)
T PF07245_consen 471 LIILGFLIIGILIFVLLI 488 (507)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444444
No 322
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=32.03 E-value=62 Score=25.18 Aligned_cols=16 Identities=6% Similarity=0.015 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHhc
Q 032617 121 ALFLFFILYMWSKMFR 136 (137)
Q Consensus 121 ~v~vffvly~l~k~~~ 136 (137)
+++.++++|+++|+.+
T Consensus 35 lvv~~lli~~~~kyr~ 50 (217)
T TIGR01432 35 FVVFVLFTIFLVKYRY 50 (217)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444466677777643
No 323
>PF06729 CENP-R: Kinetochore component, CENP-R; InterPro: IPR009601 This family consists of mammalian nuclear receptor co-activator NRIF3 proteins. NRIF3 exhibits a distinct receptor specificity in interacting with and potentiating the activity of only TRs and RXRs but not other examined nuclear receptors. NRIF3 as a coregulator that possesses both transactivation and transrepression domains and/or functions. Collectively, the NRIF3 family of coregulators may play dual roles in mediating both positive and negative regulatory effects on gene expression [].
Probab=31.62 E-value=2.2e+02 Score=21.17 Aligned_cols=19 Identities=11% Similarity=0.118 Sum_probs=13.7
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 032617 2 ASSSHRGGAGGPFYGGAAP 20 (137)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~ 20 (137)
+-||.+|--.=++|.+|..
T Consensus 7 ~yspttgt~q~sp~sSp~s 25 (139)
T PF06729_consen 7 SYSPTTGTCQMSPFSSPTS 25 (139)
T ss_pred ccCCCCCceeecCCCCCCc
Confidence 3478888877788877644
No 324
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=31.59 E-value=1.6e+02 Score=19.50 Aligned_cols=59 Identities=17% Similarity=0.152 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617 48 DLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 48 eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
+-.+....++..+..|... .....+-..+.-..+.|..+|..+-.....+.++.....+
T Consensus 41 ~~~~l~k~~~~~l~~l~~~-~~~~~~~~~~k~~~~KL~~df~~~l~~fq~~q~~~~~~~k 99 (102)
T PF14523_consen 41 KTNQLIKEISELLKKLNSL-SSDRSNDRQQKLQREKLSRDFKEALQEFQKAQRRYAEKEK 99 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHS-H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh-hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444444444444443 1223333445556788888888888888888877766554
No 325
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=31.50 E-value=1.8e+02 Score=24.80 Aligned_cols=14 Identities=21% Similarity=0.204 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 032617 65 NVAQEIHSEASFQK 78 (137)
Q Consensus 65 ~va~~I~~Ev~~Qn 78 (137)
++-.+|...++.|.
T Consensus 36 ~ld~eI~~~v~~q~ 49 (383)
T PF04100_consen 36 ELDEEIKELVREQS 49 (383)
T ss_pred HHHHHHHHHHHHHh
Confidence 34444444444443
No 326
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=31.40 E-value=17 Score=28.26 Aligned_cols=18 Identities=6% Similarity=0.135 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 032617 113 HIMHVVLFALFLFFILYM 130 (137)
Q Consensus 113 ~~~~lil~~v~vffvly~ 130 (137)
.-||+++++|++.|++--
T Consensus 36 yGWyil~~~I~ly~l~qk 53 (190)
T PF06936_consen 36 YGWYILFGCILLYLLWQK 53 (190)
T ss_dssp ------------------
T ss_pred hCHHHHHHHHHHHHHHHH
Confidence 346666555555444433
No 327
>PF10389 CoatB: Bacteriophage coat protein B ; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 2IFO_A.
Probab=31.29 E-value=56 Score=19.79 Aligned_cols=21 Identities=19% Similarity=0.031 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 032617 117 VVLFALFLFFILYMWSKMFRR 137 (137)
Q Consensus 117 lil~~v~vffvly~l~k~~~~ 137 (137)
.|..+++...+....+||.||
T Consensus 24 ~ig~avL~v~V~i~v~kwiRr 44 (46)
T PF10389_consen 24 TIGGAVLGVIVGIAVYKWIRR 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555566666553
No 328
>PF00429 TLV_coat: ENV polyprotein (coat polyprotein); InterPro: IPR018154 Enveloped viruses such as Human immunodeficiency virus 1, influenza virus, and Ebola virus sp. express a surface glycoprotein that mediates both cell attachment and fusion of viral and cellular membranes. The ENV polyprotein (coat polyprotein) usually contains two coat proteins which differ depending on the source. The structure of a number of the ENV polyprotein domains have been determined: The crystal structure of an extraviral segment of the Moloney murine leukemia virus (MoMuLV) transmembrane (TM) subunit has been determined to 1.7-A resolution. This segment contains a trimeric coiled coil, with a hydrophobic cluster at its base and a strand that packs in an antiparallel orientation against the coiled coil. This structure serves as a model for a wide range of viral fusion proteins; key residues in this structure are conserved among C- and D-type retroviruses and the filovirus ebola []. An essential step in retrovirus infection is the binding of the virus to its receptor on a target cell. The structure of the receptor-binding domain of the envelope glycoprotein from Friend murine leukemia virus (F-MuLV) has been determined determined to 2.0-A resolution. The core of the domain is an antiparallel beta sandwich, with two interstrand loops forming a helical subdomain atop the sandwich. The residues in the helical region, but not in the beta sandwich, are highly variable among mammalian C-type retroviruses with distinct tropisms, indicating that the helical subdomain determines the receptor specificity of the virus []. ; PDB: 1LCS_B 1MOF_A 1XNL_A 2XZ3_A 1AOL_A 1Y4M_C.
Probab=30.97 E-value=3.7e+02 Score=24.20 Aligned_cols=48 Identities=21% Similarity=0.237 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617 60 VKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 60 V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
+..+++++..|+..+++=.+-|..|++++++...-+-+..+-++-++-
T Consensus 423 ~~~~~~L~~~~~~d~~~~~~~i~~l~~~~~sl~~~v~qnr~~lD~l~a 470 (561)
T PF00429_consen 423 TQQYRQLSNALEEDLQALEDSISALQEQLTSLAEVVLQNRRALDLLTA 470 (561)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTG
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhh
Confidence 344444444555555444445555555555555444444444444433
No 329
>TIGR02120 GspF general secretion pathway protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.
Probab=30.74 E-value=1.5e+02 Score=24.83 Aligned_cols=59 Identities=19% Similarity=0.230 Sum_probs=30.0
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHH----------HHHHHHHHHHHH---HHHhhhhHHHHHHHHHHHhh
Q 032617 50 DDEITGLRSQV--KQLRNVAQEIHSEASF----------QKDFLDQLQMTL---IKAQAGVKNNMRRLNKSIVK 108 (137)
Q Consensus 50 D~~Ld~L~~~V--~~LK~va~~I~~Ev~~----------Qn~lLD~l~~~~---d~~~~~L~~t~~rl~~v~~~ 108 (137)
++-|+.|.+.. ..+|.+..+|.+++++ +....+++.-.| ....+.|..+.+++.+..++
T Consensus 81 ~~aL~~l~~~~~~~~~~~~~~~i~~~l~~G~sls~al~~~~~~fp~~~~~~i~~GE~sG~L~~~L~~~a~~~~~ 154 (399)
T TIGR02120 81 EEALAALLEQAEKPRLKSVLAAIRSRVLEGKSLADALAQHPRDFPPLYRALVAAGEASGALDAVLERLADYLEE 154 (399)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHCCccHHHHHHhCcccCCHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 44445454443 2355555555555543 233344444433 23445677777777666664
No 330
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=30.24 E-value=3.3e+02 Score=22.76 Aligned_cols=48 Identities=25% Similarity=0.351 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 032617 50 DDEITGLRSQVK-----QLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKN 97 (137)
Q Consensus 50 D~~Ld~L~~~V~-----~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~ 97 (137)
-..||++.+++. .|+....+.++.+.+|++.++++...++++...+.+
T Consensus 54 A~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~ 106 (301)
T PF06120_consen 54 ADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKN 106 (301)
T ss_pred HHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555443 344445566777777777777777777777766654
No 331
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=30.19 E-value=1.6e+02 Score=19.24 Aligned_cols=47 Identities=13% Similarity=0.172 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617 61 KQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 61 ~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
.........+...+..+..-++.+...++.....+..+.++.+.+-+
T Consensus 48 ~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e~ 94 (123)
T PF02050_consen 48 RNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKKLEK 94 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556677788888888888888888888888888888776654
No 332
>PF14227 UBN2_2: gag-polypeptide of LTR copia-type
Probab=29.86 E-value=76 Score=21.63 Aligned_cols=48 Identities=23% Similarity=0.256 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 032617 49 LDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKN 97 (137)
Q Consensus 49 qD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~ 97 (137)
=.+++..+..-+.+|+.++..|.+|..-. .+|..|-++++..-..|..
T Consensus 41 v~~hi~~~~~l~~~L~~~g~~i~d~~~~~-~lL~sLP~sy~~~~~~l~~ 88 (119)
T PF14227_consen 41 VRDHINEFRSLVNQLKSLGVPIDDEDKVI-ILLSSLPPSYDSFVTALLY 88 (119)
T ss_pred HHHHHHHHHHHHHhhccccccchHHHHHH-HHHHcCCHhHHHHHHHHHc
Confidence 35799999999999999999999996654 5999999998887766444
No 333
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=29.82 E-value=1e+02 Score=23.98 Aligned_cols=19 Identities=16% Similarity=0.288 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 032617 48 DLDDEITGLRSQVKQLRNV 66 (137)
Q Consensus 48 eqD~~Ld~L~~~V~~LK~v 66 (137)
|-|++++.+.+.+..+-.-
T Consensus 105 ~W~~~i~~~~~~i~~ll~~ 123 (204)
T PF00517_consen 105 QWEKEISNYTGNIYNLLEE 123 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccHHHHHHHHHH
Confidence 4666677666666555443
No 334
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=29.77 E-value=61 Score=23.46 Aligned_cols=15 Identities=20% Similarity=0.089 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHhc
Q 032617 122 LFLFFILYMWSKMFR 136 (137)
Q Consensus 122 v~vffvly~l~k~~~ 136 (137)
+.+++++.+++.+.|
T Consensus 75 aGvIg~Illi~y~ir 89 (122)
T PF01102_consen 75 AGVIGIILLISYCIR 89 (122)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444443433
No 335
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=29.67 E-value=1.5e+02 Score=18.61 Aligned_cols=27 Identities=19% Similarity=0.455 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032617 49 LDDEITGLRSQVKQLRNVAQEIHSEAS 75 (137)
Q Consensus 49 qD~~Ld~L~~~V~~LK~va~~I~~Ev~ 75 (137)
-+..+..++.++.++|.--.+|.++++
T Consensus 5 lEn~~~~~~~~i~tvk~en~~i~~~ve 31 (55)
T PF05377_consen 5 LENELPRIESSINTVKKENEEISESVE 31 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555554444
No 336
>PF06661 VirE3: VirE3; InterPro: IPR009550 This family represents a conserved region within Agrobacterium tumefaciens VirE3. Agrobacterium tumefaciens (a plant pathogen) has a tumour-inducing (Ti) plasmid of which part, the transfer (T)-region, is transferred to plant cells during the infection process. Vir proteins mediate the processing of the T-region and the transfer of a single-stranded (ss) DNA copy of this region, the T-strand, into the recipient cells. VirE3 is a translocated effector protein, but its specific role has not been established [].
Probab=29.66 E-value=46 Score=27.72 Aligned_cols=44 Identities=11% Similarity=0.155 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617 65 NVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK 108 (137)
Q Consensus 65 ~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~ 108 (137)
.=++.+|.+|..|-.|++.-+..+|.+.+.|+.+..-+.++.++
T Consensus 222 ~egne~grdi~shrrl~nkrsa~yd~~tgql~s~kht~gkiyks 265 (317)
T PF06661_consen 222 KEGNELGRDISSHRRLFNKRSAVYDEATGQLKSAKHTFGKIYKS 265 (317)
T ss_pred ccchhhhhhHHHHHHHhhhcccccccccchhhhhhhhhhHHHHH
Confidence 35789999999999999999999999999999999999999885
No 337
>PLN00174 predicted protein; Provisional
Probab=29.64 E-value=77 Score=24.13 Aligned_cols=22 Identities=5% Similarity=0.224 Sum_probs=16.9
Q ss_pred CchhHHHHHHHHHHHHHHH-HHH
Q 032617 111 SNHIMHVVLFALFLFFILY-MWS 132 (137)
Q Consensus 111 ~~~~~~lil~~v~vffvly-~l~ 132 (137)
...++.+.++++++|+.+| +++
T Consensus 115 Ke~~iKLaFYLl~FF~~ly~~mI 137 (160)
T PLN00174 115 RVIKAKSAFFIIIVIYTIWEWMI 137 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888888888 655
No 338
>PF06363 Picorna_P3A: Picornaviridae P3A protein; InterPro: IPR009419 The viral polyprotein of parechoviruses contains: coat protein VP0 (P1AB); coat protein VP3 (P1C); coat protein VP1 (P1D); picornain 2A (3.4.22.29 from EC, core protein P2A); core protein P2B; core protein P2C; core protein P3A; genome-linked protein VPg (P3B); picornain 3C (3.4.22.28 from EC, MEROPS peptidase subfamily 3CF: parechovirus picornain 3C (P3C))[]. This entry consists of the parechovirus P3A protein. P3A has been identified as a genome-linked protein (VPg), which is involved in replication [].; GO: 0019012 virion
Probab=29.62 E-value=2e+02 Score=20.09 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=13.3
Q ss_pred HHHHhhhhHHHHHHHHHHHhhc
Q 032617 88 LIKAQAGVKNNMRRLNKSIVKH 109 (137)
Q Consensus 88 ~d~~~~~L~~t~~rl~~v~~~~ 109 (137)
-+++-.-.++-++++..+..+.
T Consensus 47 ~~kv~~W~~~k~k~~~~FV~RN 68 (100)
T PF06363_consen 47 CDKVKSWVKNKMKSMLSFVERN 68 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 3445555566667777777653
No 339
>PRK10807 paraquat-inducible protein B; Provisional
Probab=29.62 E-value=4.2e+02 Score=23.79 Aligned_cols=7 Identities=29% Similarity=0.572 Sum_probs=3.7
Q ss_pred hhhHhhh
Q 032617 36 DEIQLRI 42 (137)
Q Consensus 36 ~~~q~~~ 42 (137)
++++.+.
T Consensus 416 ~~l~~~~ 422 (547)
T PRK10807 416 AQIQQKL 422 (547)
T ss_pred HHHHHHH
Confidence 4555554
No 340
>COG1766 fliF Flagellar basal body M-ring protein [Cell motility and secretion]
Probab=29.59 E-value=57 Score=29.37 Aligned_cols=28 Identities=14% Similarity=0.253 Sum_probs=0.0
Q ss_pred HhhcCCchhHHHHHHHHHHHHHHHHHHH
Q 032617 106 IVKHGSNHIMHVVLFALFLFFILYMWSK 133 (137)
Q Consensus 106 ~~~~~~~~~~~lil~~v~vffvly~l~k 133 (137)
..+.....+++.+.+.+++|+++|+++|
T Consensus 436 ~~~~~~~~~~~~~~~~l~~~lv~~~~~r 463 (545)
T COG1766 436 WETQSFLDSLIPVALYLVVFLVLFIIVR 463 (545)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHH
No 341
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=29.53 E-value=1.5e+02 Score=18.82 Aligned_cols=33 Identities=21% Similarity=0.297 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 032617 74 ASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSI 106 (137)
Q Consensus 74 v~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~ 106 (137)
+..|.+.++.|++.+-.-+..+..-.+.++.+.
T Consensus 13 la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~ 45 (69)
T PF04102_consen 13 LAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLR 45 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444433
No 342
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=29.47 E-value=1.9e+02 Score=19.69 Aligned_cols=22 Identities=14% Similarity=0.302 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 032617 49 LDDEITGLRSQVKQLRNVAQEI 70 (137)
Q Consensus 49 qD~~Ld~L~~~V~~LK~va~~I 70 (137)
-|..||.|.+.+..|..=.-.|
T Consensus 31 ins~LD~Lns~LD~LE~rnD~l 52 (83)
T PF03670_consen 31 INSMLDQLNSCLDHLEQRNDHL 52 (83)
T ss_pred HHHHHHHHHHHHHHHHHhhhHH
Confidence 3445555554444444433333
No 343
>PF11657 Activator-TraM: Transcriptional activator TraM
Probab=29.41 E-value=2.4e+02 Score=20.98 Aligned_cols=17 Identities=12% Similarity=0.374 Sum_probs=8.1
Q ss_pred hhhhHHHHHHHHHHHhh
Q 032617 92 QAGVKNNMRRLNKSIVK 108 (137)
Q Consensus 92 ~~~L~~t~~rl~~v~~~ 108 (137)
...+.+....+....+.
T Consensus 101 k~~i~~~~~~~~~~~~~ 117 (144)
T PF11657_consen 101 KSEIDNSLAEVNDLVRE 117 (144)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444455555554454
No 344
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=29.19 E-value=4e+02 Score=23.48 Aligned_cols=54 Identities=9% Similarity=0.120 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 032617 48 DLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRR 101 (137)
Q Consensus 48 eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~r 101 (137)
++.+.+..|+..+.....+=..|.+.+..-+.-|..++.++...+.+-..-..+
T Consensus 11 ~e~~~~~~Lh~~i~~cd~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~~ 64 (508)
T PF04129_consen 11 KESENFADLHNQIQECDSILESLEEMLSNFQNDLGSISSEIRSLQERSSSLNVK 64 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666666665566666666665555544433333
No 345
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=29.17 E-value=1e+02 Score=18.09 Aligned_cols=20 Identities=10% Similarity=0.047 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 032617 114 IMHVVLFALFLFFILYMWSK 133 (137)
Q Consensus 114 ~~~lil~~v~vffvly~l~k 133 (137)
..|.+.+++++.++++.+.+
T Consensus 10 ~sYg~t~l~l~~li~~~~~~ 29 (45)
T TIGR03141 10 LAYGITALVLAGLILWSLLD 29 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666554
No 346
>PHA02689 ORF051 putative membrane protein; Provisional
Probab=28.77 E-value=81 Score=23.13 Aligned_cols=21 Identities=14% Similarity=0.181 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 032617 113 HIMHVVLFALFLFFILYMWSK 133 (137)
Q Consensus 113 ~~~~lil~~v~vffvly~l~k 133 (137)
..+++++=++++++++|++.|
T Consensus 30 Y~~Iv~FEi~va~~L~~~FFk 50 (128)
T PHA02689 30 YLAIAVLELLLALALALVFFR 50 (128)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 333334434555666666655
No 347
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=28.67 E-value=75 Score=21.70 Aligned_cols=18 Identities=28% Similarity=0.646 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032617 116 HVVLFALFLFFILYMWSK 133 (137)
Q Consensus 116 ~lil~~v~vffvly~l~k 133 (137)
++++-+++++|++|++-|
T Consensus 66 ~~vVGvvLlv~viwLl~~ 83 (87)
T PF11190_consen 66 TVVVGVVLLVFVIWLLTK 83 (87)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455556667788887765
No 348
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=28.64 E-value=18 Score=22.84 Aligned_cols=11 Identities=36% Similarity=1.177 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 032617 121 ALFLFFILYMW 131 (137)
Q Consensus 121 ~v~vffvly~l 131 (137)
++++|+++|++
T Consensus 40 ~~~~~Ivv~vy 50 (56)
T PF15012_consen 40 AVFLFIVVFVY 50 (56)
T ss_pred HHHHHHhheeE
Confidence 33334444433
No 349
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=28.58 E-value=2.5e+02 Score=20.84 Aligned_cols=60 Identities=20% Similarity=0.258 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617 48 DLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 48 eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
+-++.+..+...+..+.+.-.+-..|+....+........+.....++.......+.+.+
T Consensus 85 ~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 144 (191)
T PF04156_consen 85 ELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEK 144 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455544444444444444444444444444444444444444444444433
No 350
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=28.57 E-value=1.6e+02 Score=18.67 Aligned_cols=25 Identities=16% Similarity=0.343 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 032617 68 QEIHSEASFQKDFLDQLQMTLIKAQ 92 (137)
Q Consensus 68 ~~I~~Ev~~Qn~lLD~l~~~~d~~~ 92 (137)
..|...+++=+++|+.|+-.+-.+.
T Consensus 28 ~~~e~~l~ea~~~l~qMe~E~~~~p 52 (79)
T PF05008_consen 28 REIERDLDEAEELLKQMELEVRSLP 52 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4666667777777777776665554
No 351
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=28.56 E-value=4.1e+02 Score=23.36 Aligned_cols=54 Identities=15% Similarity=0.192 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 032617 52 EITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKS 105 (137)
Q Consensus 52 ~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v 105 (137)
..+.+.+....+...+.++....++|..-+.++...++.....+.........+
T Consensus 273 ~s~~v~~~s~els~~~~~ls~~~~~qa~~ieeiaas~eeis~s~~~~~~~~~~~ 326 (554)
T PRK15041 273 GANAIYSGASEIATGNNDLSSRTEQQAASLEETAASMEQLTATVKQNAENARQA 326 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445555555566666666666666655555554444444333
No 352
>PF13608 Potyvirid-P3: Protein P3 of Potyviral polyprotein
Probab=28.54 E-value=20 Score=31.28 Aligned_cols=39 Identities=13% Similarity=0.233 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032617 51 DEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKA 91 (137)
Q Consensus 51 ~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~ 91 (137)
++=|.+.+.++.+|.+-..++++|..|. ||++.+.+|.-
T Consensus 363 ERSD~VyKiLnKlK~v~st~~~~V~hQS--LDdi~~~~eeK 401 (445)
T PF13608_consen 363 ERSDCVYKILNKLKGVFSTMGQDVRHQS--LDDIEDIFEEK 401 (445)
T ss_pred hhhHHHHHHHHHHHHHHhccCCCccCCC--ccchhhhhhhh
Confidence 4568899999999999999999999995 99999988763
No 353
>PRK11486 flagellar biosynthesis protein FliO; Provisional
Probab=28.49 E-value=78 Score=23.04 Aligned_cols=14 Identities=14% Similarity=0.033 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 032617 121 ALFLFFILYMWSKM 134 (137)
Q Consensus 121 ~v~vffvly~l~k~ 134 (137)
+++++|+++|++|-
T Consensus 28 Vl~lI~~~aWLlkR 41 (124)
T PRK11486 28 IIALILAAAWLVKR 41 (124)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444555553
No 354
>PF14960 ATP_synth_reg: ATP synthase regulation
Probab=28.48 E-value=1.4e+02 Score=18.33 Aligned_cols=35 Identities=11% Similarity=0.109 Sum_probs=16.6
Q ss_pred HHHHHHHhhcC--CchhHHHHHHHHHHHHHHHHHHHHhc
Q 032617 100 RRLNKSIVKHG--SNHIMHVVLFALFLFFILYMWSKMFR 136 (137)
Q Consensus 100 ~rl~~v~~~~~--~~~~~~lil~~v~vffvly~l~k~~~ 136 (137)
.-+++.+++.. ++.-|...-++.+ +++|+++|+.|
T Consensus 11 ~G~~k~FNs~T~~GR~N~~~ATya~i--~li~~~~k~~~ 47 (49)
T PF14960_consen 11 TGFKKYFNSYTIRGRANVAKATYASI--GLIILYFKLRR 47 (49)
T ss_pred hcHHHHhccccccchhhhHHHHHHHH--HHHHHHHhccc
Confidence 34566666432 3445544444433 33444445543
No 355
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=28.46 E-value=4.3e+02 Score=23.60 Aligned_cols=57 Identities=12% Similarity=0.091 Sum_probs=32.8
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617 51 DEITGLRS-QVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 51 ~~Ld~L~~-~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
+.+..+.+ .+.++|+.....-.|+++-...++++...-..+..++.....|++++.+
T Consensus 339 ~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~k 396 (493)
T KOG0804|consen 339 QIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQK 396 (493)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444 6666777666666666664445555555555555555555555555554
No 356
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=28.43 E-value=82 Score=16.79 Aligned_cols=17 Identities=18% Similarity=0.542 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHhc
Q 032617 120 FALFLFFILYMWSKMFR 136 (137)
Q Consensus 120 ~~v~vffvly~l~k~~~ 136 (137)
.++.+.+++|+++-++|
T Consensus 4 ~~l~~~L~~YL~~aLl~ 20 (26)
T TIGR02115 4 LVLAVGLFIYLFYALLR 20 (26)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 34444455555554433
No 357
>PRK14740 kdbF potassium-transporting ATPase subunit F; Provisional
Probab=28.38 E-value=1.1e+02 Score=16.73 Aligned_cols=17 Identities=24% Similarity=0.440 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHhc
Q 032617 120 FALFLFFILYMWSKMFR 136 (137)
Q Consensus 120 ~~v~vffvly~l~k~~~ 136 (137)
.++.+.+++|+++-++|
T Consensus 9 ~a~a~~Lf~YLv~ALlR 25 (29)
T PRK14740 9 LALATGLFVYLLVALLR 25 (29)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 34444455566665555
No 358
>PF08518 GIT_SHD: Spa2 homology domain (SHD) of GIT; InterPro: IPR013724 GIT proteins are signalling integrators with GTPase-activating function which may be involved in the organisation of the cytoskeletal matrix assembled at active zones (CAZ). The function of the CAZ might be to define sites of neurotransmitter release. Mutations in the Spa2 homology domain (SHD) domain of GIT1 described here interfere with the association of GIT1 with Piccolo, beta-PIX, and focal adhesion kinase [].
Probab=28.31 E-value=78 Score=17.52 Aligned_cols=16 Identities=13% Similarity=0.299 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 032617 61 KQLRNVAQEIHSEASF 76 (137)
Q Consensus 61 ~~LK~va~~I~~Ev~~ 76 (137)
.++..++.||.+|++.
T Consensus 11 ~~F~eL~~DV~~E~~R 26 (31)
T PF08518_consen 11 QRFEELATDVYDELDR 26 (31)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5678899999999974
No 359
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=28.13 E-value=3.9e+02 Score=23.03 Aligned_cols=57 Identities=16% Similarity=0.138 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617 51 DEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 51 ~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
...-+|++.+...-.+.-.-..-..+|..+||.=..-..+...++..-|-.++.++.
T Consensus 166 ~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnLLQ 222 (401)
T PF06785_consen 166 TLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNLLQ 222 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333456666655555555555556678888888888888888888888877777776
No 360
>PF06916 DUF1279: Protein of unknown function (DUF1279); InterPro: IPR009688 This entry represents the C terminus (approx. 120 residues) of a number of eukaryotic proteins of unknown function.
Probab=27.91 E-value=1.1e+02 Score=20.53 Aligned_cols=34 Identities=15% Similarity=0.096 Sum_probs=19.4
Q ss_pred HHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHH
Q 032617 100 RRLNKSIVKHGSNHIMHVVLFALFLFFILYMWSK 133 (137)
Q Consensus 100 ~rl~~v~~~~~~~~~~~lil~~v~vffvly~l~k 133 (137)
+|++.++++=+......-+.+.++-|..+|+.++
T Consensus 1 qr~K~l~k~YG~~~l~vy~~~s~~~~~~~y~~v~ 34 (91)
T PF06916_consen 1 QRLKQLFKKYGYVALGVYLGLSFISLGSCYLAVS 34 (91)
T ss_pred CcHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3788888864333433334444555566666554
No 361
>TIGR03368 cellulose_yhjU cellulose synthase operon protein YhjU. This protein was identified by the partial phylogenetic profiling algorithm (PubMed:16930487) as part of the system for cellulose biosynthesis in bacteria, and in fact is found in cellulose biosynthesis gene regions. The protein was designated YhjU in Salmonella enteritidis, where disruption of its gene disrupts cellulose biosynthesis and biofilm formation (PubMed:11929533).
Probab=27.87 E-value=3.2e+02 Score=24.66 Aligned_cols=51 Identities=12% Similarity=0.092 Sum_probs=38.9
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617 58 SQVKQLRN-VAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK 108 (137)
Q Consensus 58 ~~V~~LK~-va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~ 108 (137)
..++++|+ +|+-|+-=+=.+..-|=-++.-++..++-..-+..=+-.++.+
T Consensus 40 ~~l~~~R~~iAipigi~Lly~Ds~LPp~~rl~~q~~ql~~Fs~~Yl~EL~~R 91 (518)
T TIGR03368 40 RWLRILRQFIAVPAGIALLYRDSWLPPLDRLWSQGGQLQGFSLGYLVELLGR 91 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHhccCHHHHHHHHHh
Confidence 46778888 8888988888888877777777777777766666666666664
No 362
>COG4499 Predicted membrane protein [Function unknown]
Probab=27.56 E-value=1.3e+02 Score=26.24 Aligned_cols=30 Identities=17% Similarity=0.041 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHH-HhhhhHHHHHHHHHHHhh
Q 032617 79 DFLDQLQMTLIK-AQAGVKNNMRRLNKSIVK 108 (137)
Q Consensus 79 ~lLD~l~~~~d~-~~~~L~~t~~rl~~v~~~ 108 (137)
..||+|.+=.+. -........+.+..|-+.
T Consensus 185 ~Tld~l~e~i~e~~~kE~e~~~kn~a~VpK~ 215 (434)
T COG4499 185 ETLDDLAEFIDEEYQKETEKINKNYAFVPKK 215 (434)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcceeecccc
Confidence 345555555544 333344444455555554
No 363
>PRK13275 mtrF tetrahydromethanopterin S-methyltransferase subunit F; Provisional
Probab=27.52 E-value=1.8e+02 Score=18.94 Aligned_cols=44 Identities=18% Similarity=0.136 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCchhHHHHHHHHHH
Q 032617 80 FLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLFALFL 124 (137)
Q Consensus 80 lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~~~~~~~lil~~v~v 124 (137)
-+|++-++++--...+-++.+--.-+... +..+..+-++|++++
T Consensus 12 ~I~~~ve~i~Yk~qLiaR~~kL~SGv~~~-~~~G~aiG~~~AlvL 55 (67)
T PRK13275 12 AIDNVVEDIRYKAQLIARNQKLESGVIAT-GIIGFAIGFLLALLL 55 (67)
T ss_pred HHHHHHHHHHHHHHHHhhcchhhHHhhhh-hHHHHHHHHHHHHHH
Confidence 34555555555555666665555555553 344444444444443
No 364
>PF12455 Dynactin: Dynein associated protein ; InterPro: IPR022157 This domain family is found in eukaryotes, and is approximately 280 amino acids in length. The family is found in association with PF01302 from PFAM. There is a single completely conserved residue E that may be functionally important. Dynactin has been associated with Dynein, a kinesin protein which is involved in organelle transport, mitotic spindle assembly and chromosome segregation. Dynactin anchors Dynein to specific subcellular structures.
Probab=27.45 E-value=1.3e+02 Score=24.45 Aligned_cols=48 Identities=19% Similarity=0.209 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 032617 50 DDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKN 97 (137)
Q Consensus 50 D~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~ 97 (137)
+..+|.+...++++|.+-.....+-.+=...++.+.+...++....++
T Consensus 222 ~~~ld~~~~~~~~l~~~lq~~~~~~~~~~~~l~~l~~~~~~~k~~~~K 269 (274)
T PF12455_consen 222 QSALDSMAANLARLKTLLQSGISETSELFKLLQDLITQARSAKQACKK 269 (274)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555433333222222333444444444444333333
No 365
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.18 E-value=3.8e+02 Score=22.52 Aligned_cols=88 Identities=7% Similarity=0.109 Sum_probs=45.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhc---CC--chhHHHHHHH
Q 032617 47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKH---GS--NHIMHVVLFA 121 (137)
Q Consensus 47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~---~~--~~~~~lil~~ 121 (137)
.+||+...+=..-|..+..--.+.++=.++=..|.-+=+.-+|+-+-.+.++.-+++.-.+.= .. ++.=.+.+++
T Consensus 207 e~~~~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~~k~~~i~ 286 (305)
T KOG0809|consen 207 ENNEEVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRNKKMKVIL 286 (305)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhcCCceEehH
Confidence 446666655555554444433333333333333333344556777777777777777666641 11 1222355666
Q ss_pred HHHHHHHHHHHHH
Q 032617 122 LFLFFILYMWSKM 134 (137)
Q Consensus 122 v~vffvly~l~k~ 134 (137)
+++++++.+++-+
T Consensus 287 ~L~l~ii~llvll 299 (305)
T KOG0809|consen 287 MLTLLIIALLVLL 299 (305)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665543
No 366
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=27.10 E-value=5.4e+02 Score=24.35 Aligned_cols=70 Identities=9% Similarity=0.160 Sum_probs=52.8
Q ss_pred hhHhhhcchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617 37 EIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 37 ~~q~~~~~~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
+++.-+.++ .|.++.|..|...+..++.....+..+++.+......++..+..+...++....++..+-.
T Consensus 618 ~lE~~~~qL-~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~ 687 (769)
T PF05911_consen 618 QLESLKNQL-KESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEE 687 (769)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 344444444 6778888889999999999888888888888888888888887777777776666665543
No 367
>PF15339 Afaf: Acrosome formation-associated factor
Probab=26.85 E-value=1.5e+02 Score=23.09 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=18.9
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHH
Q 032617 101 RLNKSIVKHGSNHIMHVVLFALFLFFILYMWSKM 134 (137)
Q Consensus 101 rl~~v~~~~~~~~~~~lil~~v~vffvly~l~k~ 134 (137)
|++-|+.- ..+.+++|++++.|....++|+
T Consensus 129 KlkLmLGI----sLmTl~lfv~Ll~~c~atlykl 158 (200)
T PF15339_consen 129 KLKLMLGI----SLMTLFLFVILLAFCSATLYKL 158 (200)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 44445543 3455677777777777777775
No 368
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=26.84 E-value=3.7e+02 Score=22.33 Aligned_cols=55 Identities=9% Similarity=0.047 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 032617 52 EITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSI 106 (137)
Q Consensus 52 ~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~ 106 (137)
.|+.+.+++..+..-=....+++.+.+.=|..++..+.....+.......+...-
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae 259 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAE 259 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555554444433344444444445555555555555444444444443333
No 369
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.64 E-value=2e+02 Score=19.07 Aligned_cols=29 Identities=21% Similarity=0.308 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 032617 74 ASFQKDFLDQLQMTLIKAQAGVKNNMRRL 102 (137)
Q Consensus 74 v~~Qn~lLD~l~~~~d~~~~~L~~t~~rl 102 (137)
+..|.+.|+.|++.+....-.+.+...+|
T Consensus 17 ~AfQE~tieeLn~~laEq~~~i~k~q~ql 45 (72)
T COG2900 17 LAFQEQTIEELNDALAEQQLVIDKLQAQL 45 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555554443333333333333
No 370
>PF04088 Peroxin-13_N: Peroxin 13, N-terminal region; InterPro: IPR007223 Peroxin-13 is a component of the peroxisomal translocation machinery with Peroxin-14 and Peroxin-17. Both termini of Peroxin-13 are oriented to the cytosol. It is required for peroxisomal association of peroxin-14 []. The proteins also contain an SH3 domain (IPR001452 from INTERPRO).; GO: 0016560 protein import into peroxisome matrix, docking, 0005777 peroxisome, 0016021 integral to membrane
Probab=26.58 E-value=73 Score=24.05 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhc
Q 032617 113 HIMHVVLFALFLFFILYMWSKMFR 136 (137)
Q Consensus 113 ~~~~lil~~v~vffvly~l~k~~~ 136 (137)
.+|-+++|+.++|-+=|+++|+.|
T Consensus 135 s~~PlllF~~~v~G~PyLi~Klik 158 (158)
T PF04088_consen 135 SSKPLLLFLAAVFGLPYLIWKLIK 158 (158)
T ss_pred CcccHHHHHHHHHHHHHHHHHHhC
Confidence 456677777778888899999865
No 371
>PHA03386 P10 fibrous body protein; Provisional
Probab=26.58 E-value=1.2e+02 Score=21.02 Aligned_cols=29 Identities=21% Similarity=0.453 Sum_probs=14.5
Q ss_pred hhhHhhhcchhHhhHHHHHHHHHHHHHHHH
Q 032617 36 DEIQLRIDPVNADLDDEITGLRSQVKQLRN 65 (137)
Q Consensus 36 ~~~q~~~~~~~~eqD~~Ld~L~~~V~~LK~ 65 (137)
+.+|.+++.+ ++|.+.||++...+..+-.
T Consensus 22 daLQ~qV~dv-~~n~~~LDa~~~qL~~l~t 50 (94)
T PHA03386 22 DALQTQLNGL-EEDSQPLDGLPAQLTELDT 50 (94)
T ss_pred HHHHHHHHHH-HhcchhhhhHHHHHHHHHH
Confidence 3455555554 4444555555555544333
No 372
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=26.38 E-value=98 Score=16.27 Aligned_cols=19 Identities=11% Similarity=0.292 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 032617 118 VLFALFLFFILYMWSKMFR 136 (137)
Q Consensus 118 il~~v~vffvly~l~k~~~ 136 (137)
+..++.+.+++|.++-++|
T Consensus 3 l~~~v~~~L~~YL~~aLl~ 21 (25)
T PF09604_consen 3 LGGIVAVALFVYLFYALLR 21 (25)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 3344445555566655444
No 373
>PF11658 DUF3260: Protein of unknown function (DUF3260); InterPro: IPR017744 This protein was identified by the partial phylogenetic profiling algorithm [] as part of the system for cellulose biosynthesis in bacteria, and in fact is found in cellulose biosynthesis gene regions. The protein was designated YhjU in Salmonella enteritidis, where disruption of its gene disrupts cellulose biosynthesis and biofilm formation [].
Probab=26.28 E-value=3.7e+02 Score=24.26 Aligned_cols=51 Identities=14% Similarity=0.150 Sum_probs=40.8
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617 58 SQVKQLRN-VAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK 108 (137)
Q Consensus 58 ~~V~~LK~-va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~ 108 (137)
..++++|+ +|+-|+-=+=.+..-|=-++.-++..++-..-+..=+-.++.+
T Consensus 39 ~~l~~~R~~iAipig~aLly~DswLPp~~rl~~q~~ql~~FS~~Yl~EL~~R 90 (518)
T PF11658_consen 39 RRLRRLRHWIAIPIGIALLYHDSWLPPFDRLWSQAGQLAGFSFSYLLELAGR 90 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhcCCHHHHHHHHHh
Confidence 56788888 8999999888888888888888888777777777777777764
No 374
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=26.23 E-value=1.9e+02 Score=18.63 Aligned_cols=59 Identities=20% Similarity=0.394 Sum_probs=32.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 032617 47 ADLDDEITGLRSQVKQLRNVAQEIHSEASF---QKDFLDQLQMTLIKAQAGVKNNMRRLNKS 105 (137)
Q Consensus 47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~---Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v 105 (137)
.+-...++.+...|..|+.+-..+-..... -.+-||.+..........+++-.+.|...
T Consensus 10 ~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~ 71 (103)
T PF00804_consen 10 QEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKD 71 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667777777777777766665554442 22234444444444444444444444444
No 375
>PF02167 Cytochrom_C1: Cytochrome C1 family; InterPro: IPR002326 Cytochrome bc1 complex (ubiquinol:ferricytochrome c oxidoreductase) is found in mitochondria, photosynthetic bacteria and other prokaryotes. It is minimally composed of three subunits: cytochrome b, carrying a low- and a high-potential haem group; cytochrome c1 (cyt c1); and a high-potential Rieske iron-sulphur protein. The general function of the complex is electron transfer between two mobile redox carriers, ubiquinol and cytochrome c; the electron transfer is coupled with proton translocation across the membrane, thus generating proton-motive force in the form of an electrochemical potential that can drive ATP synthesis. In its structure and functions, the cytochrome bc1 complex bears extensive analogy to the cytochrome b6f complex of chloroplasts and cyanobacteria; cyt c1 plays an analogous role to cytochrome f, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1P84_D 2IBZ_D 1EZV_D 3CX5_O 3CXH_O 1KB9_D 1KYO_D 1ZRT_Q 2CA4_B 2C9X_B ....
Probab=26.20 E-value=82 Score=25.01 Aligned_cols=19 Identities=32% Similarity=0.473 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 032617 116 HVVLFALFLFFILYMWSKM 134 (137)
Q Consensus 116 ~lil~~v~vffvly~l~k~ 134 (137)
++++|+++++++.|++-|.
T Consensus 196 ~vl~fL~il~~l~y~~kk~ 214 (219)
T PF02167_consen 196 KVLGFLLILTVLAYLLKKE 214 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555543
No 376
>PHA02967 hypothetical protein; Provisional
Probab=26.18 E-value=97 Score=22.71 Aligned_cols=21 Identities=14% Similarity=0.248 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 032617 113 HIMHVVLFALFLFFILYMWSK 133 (137)
Q Consensus 113 ~~~~lil~~v~vffvly~l~k 133 (137)
..+++++=++++++++|++.|
T Consensus 27 Y~~Iv~FEi~val~L~~~FFk 47 (128)
T PHA02967 27 YFYILVFEVIVALIIINFFFK 47 (128)
T ss_pred chhHHHHHHHHHHHHHHHHHH
Confidence 334444444555666666655
No 377
>PF10864 DUF2663: Protein of unknown function (DUF2663); InterPro: IPR020210 This entry represents a group of uncharacterised transmembrane proteins.
Probab=26.01 E-value=1.7e+02 Score=21.45 Aligned_cols=7 Identities=29% Similarity=1.070 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 032617 126 FILYMWS 132 (137)
Q Consensus 126 fvly~l~ 132 (137)
|++|+..
T Consensus 34 ~~~y~~~ 40 (130)
T PF10864_consen 34 FFIYFYI 40 (130)
T ss_pred HHHHHHH
Confidence 3334433
No 378
>PF07432 Hc1: Histone H1-like protein Hc1; InterPro: IPR010886 This family consists of several bacterial histone H1-like Hc1 proteins, which are found in Chlamydiae and Bacteroidetes species. Chlamydiae are prokaryotic obligate intracellular parasites that undergo a biphasic life cycle involving an infectious, extracellular form known as elementary bodies and an intracellular, replicating form termed reticulate bodies. The gene coding for Hc1 is expressed only during the late stages of the chlamydial life cycle concomitant with the reorganisation of chlamydial reticulate bodies into elementary bodies, suggesting that the Hc1 protein plays a role in the condensation of chlamydial chromatin during intracellular differentiation [].; GO: 0003677 DNA binding
Probab=25.99 E-value=2.6e+02 Score=20.29 Aligned_cols=46 Identities=13% Similarity=0.208 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617 56 LRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK 108 (137)
Q Consensus 56 L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~ 108 (137)
|.+.+..++++-..|..+++ ..+.+---++.+.+.++-.|+++++.
T Consensus 2 lKdt~~kmkeL~e~~~~D~~-------K~EKGNKAAGtRaRK~sleLeKLaKe 47 (123)
T PF07432_consen 2 LKDTFKKMKELLESFEADAE-------KAEKGNKAAGTRARKASLELEKLAKE 47 (123)
T ss_pred hHHHHHHHHHHHHHHHHHHH-------HHHccchHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555442 35666667788888888888888763
No 379
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=25.94 E-value=1.4e+02 Score=17.66 Aligned_cols=12 Identities=50% Similarity=0.758 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHH
Q 032617 123 FLFFILYMWSKM 134 (137)
Q Consensus 123 ~vffvly~l~k~ 134 (137)
.+|++-|++.|+
T Consensus 26 ~~~~~~~F~~k~ 37 (42)
T PF11346_consen 26 GVFFIRYFIRKM 37 (42)
T ss_pred HHHHHHHHHHHH
Confidence 344554555553
No 380
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=25.90 E-value=2.7e+02 Score=24.81 Aligned_cols=43 Identities=9% Similarity=0.061 Sum_probs=23.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032617 47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLI 89 (137)
Q Consensus 47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d 89 (137)
.|.+++|+.|.+.+..+...-.+...+|++...-+..|...++
T Consensus 79 sELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 79 AQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666554444444555555555555555555553
No 381
>PHA02909 hypothetical protein; Provisional
Probab=25.90 E-value=91 Score=19.93 Aligned_cols=12 Identities=42% Similarity=0.597 Sum_probs=6.1
Q ss_pred chhHHHHHHHHH
Q 032617 112 NHIMHVVLFALF 123 (137)
Q Consensus 112 ~~~~~lil~~v~ 123 (137)
+..|+++-|+++
T Consensus 30 ntfcimvsfilf 41 (72)
T PHA02909 30 NTFCIMVSFILF 41 (72)
T ss_pred cchhHHHHHHHH
Confidence 455665544443
No 382
>PF15222 KAR: Kidney androgen-regulated
Probab=25.83 E-value=96 Score=21.41 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 032617 69 EIHSEASFQKDFLDQLQMTLIKA 91 (137)
Q Consensus 69 ~I~~Ev~~Qn~lLD~l~~~~d~~ 91 (137)
.|+.|+ ||.++|-|+..+|..
T Consensus 8 sin~el--q~si~d~lns~~dql 28 (103)
T PF15222_consen 8 SINKEL--QNSIIDILNSVFDQL 28 (103)
T ss_pred HHHHHH--HHHHHHHHHHHHHHh
Confidence 466665 677888888888754
No 383
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=25.78 E-value=2.2e+02 Score=19.44 Aligned_cols=58 Identities=5% Similarity=0.162 Sum_probs=35.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617 47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK 108 (137)
Q Consensus 47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~ 108 (137)
.|.++.++..+++-+ +...+.+-...-....+.+...+..+-..|..+..++..++..
T Consensus 19 ~e~~~~l~~Wa~~~~----v~~~~~~f~~~~~~~~~~~~~~~~~vi~~L~~a~~~l~~I~~n 76 (113)
T PF02520_consen 19 AEIEEQLDEWAEKYG----VQDQYNEFKAQVQAQKEEVRKNVTAVISNLSSAFAKLSAILDN 76 (113)
T ss_pred HHHHHHHHHHHHHCC----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 466677777777665 4444444444444455566666666666666777777776663
No 384
>PHA02662 ORF131 putative membrane protein; Provisional
Probab=25.70 E-value=67 Score=25.75 Aligned_cols=17 Identities=18% Similarity=0.180 Sum_probs=8.7
Q ss_pred HhhHHHHHHHHHHHHHH
Q 032617 47 ADLDDEITGLRSQVKQL 63 (137)
Q Consensus 47 ~eqD~~Ld~L~~~V~~L 63 (137)
.+-|--++.+.+.+..|
T Consensus 74 ~sf~lll~Al~Et~~~L 90 (226)
T PHA02662 74 DALALASAALAETLAEL 90 (226)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 34455555555555443
No 385
>KOG2729 consensus ER vesicle integral membrane protein involved in establishing cell polarity, signaling and protein degradation [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=25.68 E-value=95 Score=23.06 Aligned_cols=22 Identities=18% Similarity=0.505 Sum_probs=17.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHH
Q 032617 111 SNHIMHVVLFALFLFFILYMWS 132 (137)
Q Consensus 111 ~~~~~~lil~~v~vffvly~l~ 132 (137)
...++.+-++++.+|+.+|.++
T Consensus 110 k~~~~KL~fyll~FF~yly~mI 131 (137)
T KOG2729|consen 110 KERWIKLAFYLLSFFYYLYWMI 131 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888888888776
No 386
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.67 E-value=3.8e+02 Score=22.02 Aligned_cols=44 Identities=20% Similarity=0.254 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 032617 59 QVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRL 102 (137)
Q Consensus 59 ~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl 102 (137)
.|..|-.-..+|..++++..+=+|.+...+......+..+..+|
T Consensus 53 ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I 96 (265)
T COG3883 53 EIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENI 96 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444444444444444444444
No 387
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=25.64 E-value=89 Score=22.19 Aligned_cols=22 Identities=14% Similarity=0.310 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 032617 115 MHVVLFALFLFFILYMWSKMFR 136 (137)
Q Consensus 115 ~~lil~~v~vffvly~l~k~~~ 136 (137)
++.+++.++.+++-|+++|+++
T Consensus 97 ~~~~l~~l~~l~~~~~~~~~~~ 118 (135)
T PF04246_consen 97 LWAILGGLLGLALGFLILRLFD 118 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555543
No 388
>PHA00547 hypothetical protein
Probab=25.55 E-value=67 Score=26.93 Aligned_cols=20 Identities=20% Similarity=0.501 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 032617 117 VVLFALFLFFILYMWSKMFR 136 (137)
Q Consensus 117 lil~~v~vffvly~l~k~~~ 136 (137)
+|++++++|+.+|+++-+|+
T Consensus 38 iifiIFfv~~~IyfIw~ffk 57 (337)
T PHA00547 38 LVFWILFALQCIYFVWWLWK 57 (337)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 46667777777777776663
No 389
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=25.39 E-value=4.2e+02 Score=22.44 Aligned_cols=61 Identities=8% Similarity=0.254 Sum_probs=0.0
Q ss_pred hhHhhhcchhHhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhHH
Q 032617 37 EIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHSE----ASFQKDFLDQLQMTLIKAQAGVKN 97 (137)
Q Consensus 37 ~~q~~~~~~~~eqD~~Ld~L~~~V~~LK~va~~I~~E----v~~Qn~lLD~l~~~~d~~~~~L~~ 97 (137)
..-...+++..-|+.....++..-.++|.+...+..= -.+..+.+++++.++.+....+..
T Consensus 22 ~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~~~l~D 86 (330)
T PF07851_consen 22 SYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERRCQLFD 86 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhhHHH
No 390
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=25.36 E-value=1.1e+02 Score=27.04 Aligned_cols=15 Identities=13% Similarity=0.386 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHH
Q 032617 58 SQVKQLRNVAQEIHS 72 (137)
Q Consensus 58 ~~V~~LK~va~~I~~ 72 (137)
+..+.||+|+-++..
T Consensus 276 ~iTsgLkkVt~dmkT 290 (480)
T KOG2675|consen 276 GITSGLKKVTDDMKT 290 (480)
T ss_pred hhhhhhhhCChhhhc
Confidence 346788888877654
No 391
>TIGR00206 fliF flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF). Component of the M (cytoplasmic associated) ring, one of four rings (L,P,S,M) which make up the flagellar hook-basal body which is a major portion of the flagellar organelle. Although the basic structure of the flagella appears to be similar for all bacteria, additional rings and structures surrounding the basal body have been observed for some bacteria (eg Vibrio cholerae and Treponema pallidum).
Probab=25.35 E-value=2.1e+02 Score=25.76 Aligned_cols=15 Identities=7% Similarity=-0.139 Sum_probs=8.1
Q ss_pred hhHHHHHHHHHHHhh
Q 032617 94 GVKNNMRRLNKSIVK 108 (137)
Q Consensus 94 ~L~~t~~rl~~v~~~ 108 (137)
++++...++..++++
T Consensus 4 ~~~~~~~~~~~~~~~ 18 (555)
T TIGR00206 4 TFTQFKVSAKEFFKK 18 (555)
T ss_pred HHHHHHHHHHHHHHh
Confidence 344445556666664
No 392
>PRK10404 hypothetical protein; Provisional
Probab=25.33 E-value=2.4e+02 Score=19.56 Aligned_cols=84 Identities=15% Similarity=0.099 Sum_probs=39.7
Q ss_pred cchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH----hhhhHHHHHHHHHHHhhcCCchhHHH
Q 032617 43 DPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKD-FLDQLQMTLIKA----QAGVKNNMRRLNKSIVKHGSNHIMHV 117 (137)
Q Consensus 43 ~~~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~-lLD~l~~~~d~~----~~~L~~t~~rl~~v~~~~~~~~~~~l 117 (137)
+.+.++-..-++.+.+-++.-..-+..=.++++.+-. .|++.-+.+..+ ..+.+.+...........-+..+-+.
T Consensus 8 ~~l~~dl~~L~~dle~Ll~~~~~~a~e~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~e~Pw~avGia 87 (101)
T PRK10404 8 TRIDDDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKPWQGIGVG 87 (101)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 3343444444444444433333333333333443322 444444444433 33467777777888887655544444
Q ss_pred HHHHHHHHH
Q 032617 118 VLFALFLFF 126 (137)
Q Consensus 118 il~~v~vff 126 (137)
..+.+++-+
T Consensus 88 agvGlllG~ 96 (101)
T PRK10404 88 AAVGLVLGL 96 (101)
T ss_pred HHHHHHHHH
Confidence 444444333
No 393
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=25.29 E-value=86 Score=27.25 Aligned_cols=24 Identities=8% Similarity=0.526 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhc
Q 032617 113 HIMHVVLFALFLFFILYMWSKMFR 136 (137)
Q Consensus 113 ~~~~lil~~v~vffvly~l~k~~~ 136 (137)
....+|+.++++|++.|++.++++
T Consensus 44 lv~~~ii~lvv~~~l~~~l~~v~~ 67 (400)
T COG3071 44 LVIFLIIALVVLYLLEWLLRRVLR 67 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344556666777788888887765
No 394
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=25.23 E-value=92 Score=24.13 Aligned_cols=20 Identities=5% Similarity=0.031 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032617 115 MHVVLFALFLFFILYMWSKM 134 (137)
Q Consensus 115 ~~lil~~v~vffvly~l~k~ 134 (137)
|.++.-++.+++++|++.|+
T Consensus 49 ~~~i~qlInFlIlv~lL~k~ 68 (205)
T PRK06231 49 WVFIAHLIAFSILLLLGIFL 68 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555555
No 395
>PF10854 DUF2649: Protein of unknown function (DUF2649); InterPro: IPR021217 This entry is represented by Spiroplasma phage 1-C74, Orf10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members in this family of proteins are also annotated as Plectrovirus orf 10 transmembrane proteins however currently no function is known.
Probab=25.03 E-value=1.3e+02 Score=19.40 Aligned_cols=17 Identities=6% Similarity=0.288 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032617 116 HVVLFALFLFFILYMWS 132 (137)
Q Consensus 116 ~lil~~v~vffvly~l~ 132 (137)
.+|.+=+++||+.|+++
T Consensus 40 ~MiGiWiVilFLtWf~l 56 (67)
T PF10854_consen 40 IMIGIWIVILFLTWFLL 56 (67)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445455555555544
No 396
>PF13677 MotB_plug: Membrane MotB of proton-channel complex MotA/MotB
Probab=24.80 E-value=85 Score=19.43 Aligned_cols=14 Identities=21% Similarity=0.510 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 032617 118 VLFALFLFFILYMW 131 (137)
Q Consensus 118 il~~v~vffvly~l 131 (137)
+.+++++|+++|.+
T Consensus 25 mTLLl~fFVlL~s~ 38 (58)
T PF13677_consen 25 MTLLLAFFVLLFSM 38 (58)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 397
>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.79 E-value=3.6e+02 Score=21.46 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=15.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 032617 47 ADLDDEITGLRSQVKQLRNVAQEIHSE 73 (137)
Q Consensus 47 ~eqD~~Ld~L~~~V~~LK~va~~I~~E 73 (137)
.+-.+..+.|..+|++|-+--..|..|
T Consensus 135 a~~ke~~k~l~~Rv~~L~~~~~~IrkE 161 (215)
T KOG1690|consen 135 AQIKETDKLLEGRVRQLNSRLESIRKE 161 (215)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 344555666666776666544455444
No 398
>PF08060 NOSIC: NOSIC (NUC001) domain; InterPro: IPR012976 This is the central domain in Nop56/SIK1-like proteins [].; PDB: 3PLA_K 3ICX_B 3ID6_A 3ID5_E 3NVM_A 3NMU_B 2NNW_C 3NVI_A 3NVK_A 2OZB_E ....
Probab=24.70 E-value=1.5e+02 Score=17.92 Aligned_cols=24 Identities=8% Similarity=0.151 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHH
Q 032617 75 SFQKDFLDQLQMTLIKAQAGVKNN 98 (137)
Q Consensus 75 ~~Qn~lLD~l~~~~d~~~~~L~~t 98 (137)
-+-|+++|+++++.......++.-
T Consensus 3 i~~~~l~~~id~ei~~~~~~lre~ 26 (53)
T PF08060_consen 3 IQANELLDDIDKEINLLHMRLREW 26 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 355788888888877776666543
No 399
>COG5487 Small integral membrane protein [Function unknown]
Probab=24.68 E-value=1.5e+02 Score=18.40 Aligned_cols=21 Identities=10% Similarity=0.578 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 032617 115 MHVVLFALFLFFILYMWSKMF 135 (137)
Q Consensus 115 ~~lil~~v~vffvly~l~k~~ 135 (137)
-.+.+++.+++|++.++.-..
T Consensus 31 AkIlF~i~~vlf~vsL~~g~~ 51 (54)
T COG5487 31 AKILFFIFLVLFLVSLFAGLK 51 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334444444555555554433
No 400
>COG1963 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.68 E-value=3e+02 Score=20.80 Aligned_cols=37 Identities=22% Similarity=0.288 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617 69 EIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 69 ~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
.+....-.|.++|+.|-+++.+- ..+-..++++.++.
T Consensus 91 GVRr~aG~QA~iLN~l~~~~~~e--~~~~~~~~lKellG 127 (153)
T COG1963 91 GVRRSAGVQARILNQLIEELVNE--KKDFDKKRLKELLG 127 (153)
T ss_pred hHHHhccchHHHHHHHHHHHHHh--hccCCHHHHHHHhC
Confidence 34445556777888877774433 33334455777776
No 401
>PRK06007 fliF flagellar MS-ring protein; Reviewed
Probab=24.63 E-value=2.1e+02 Score=25.57 Aligned_cols=15 Identities=27% Similarity=0.377 Sum_probs=8.4
Q ss_pred hhHHHHHHHHHHHhh
Q 032617 94 GVKNNMRRLNKSIVK 108 (137)
Q Consensus 94 ~L~~t~~rl~~v~~~ 108 (137)
.++..+.++..++++
T Consensus 4 ~~~~~~~~~~~~~~~ 18 (542)
T PRK06007 4 KLKELMEKLKEFLQK 18 (542)
T ss_pred hHHHHHHHHHHHHHh
Confidence 344555666666664
No 402
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=24.50 E-value=3.5e+02 Score=22.55 Aligned_cols=15 Identities=7% Similarity=0.025 Sum_probs=8.0
Q ss_pred hhhHHHHHHHHHHHh
Q 032617 93 AGVKNNMRRLNKSIV 107 (137)
Q Consensus 93 ~~L~~t~~rl~~v~~ 107 (137)
++|..+..++....+
T Consensus 137 G~L~~~l~~la~~~~ 151 (399)
T PRK10573 137 GKLDECCFQLARQQE 151 (399)
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555554433
No 403
>TIGR03063 srtB_target sortase B cell surface sorting signal. Two different classes of sorting signal, both analogous to the sortase A signal LPXTG, may be recognized by the sortase SrtB. These are given as NXZTN and NPKXZ. Proteins sorted by this class of sortase are less common than the sortase A and LPXTG system. This model describes a number of cell surface protein C-terminal regions from Gram-positive bacteria that appear to be sortase B (SrtB) sorting signals.
Probab=24.48 E-value=1e+02 Score=16.87 Aligned_cols=11 Identities=27% Similarity=0.002 Sum_probs=5.7
Q ss_pred hhHHHHHHHHH
Q 032617 113 HIMHVVLFALF 123 (137)
Q Consensus 113 ~~~~lil~~v~ 123 (137)
..+|.++|+.-
T Consensus 10 i~ly~~l~~~s 20 (29)
T TIGR03063 10 IGLYAVLFLGS 20 (29)
T ss_pred HHHHHHHHHHH
Confidence 34555555543
No 404
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.25 E-value=3.8e+02 Score=21.58 Aligned_cols=50 Identities=10% Similarity=0.028 Sum_probs=31.4
Q ss_pred HHHHHHhhhhHHHHHHHHHHHhhc-----------CCchhHHHHHHHHHHHHHHHHHHHHh
Q 032617 86 MTLIKAQAGVKNNMRRLNKSIVKH-----------GSNHIMHVVLFALFLFFILYMWSKMF 135 (137)
Q Consensus 86 ~~~d~~~~~L~~t~~rl~~v~~~~-----------~~~~~~~lil~~v~vffvly~l~k~~ 135 (137)
+.|..-...|++...|++.+.++= ..+..=.+|+-+|+.+.++++++-|+
T Consensus 170 e~l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll~kIk~kkrrdslILa~Vis~C~llllfy~~ 230 (231)
T KOG3208|consen 170 ENLHSQRSVLGGINNKVNNIANRFPAINQLLQKIKIKKRRDSLILAAVISVCTLLLLFYWI 230 (231)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 566777777888888888777641 12233346777777666666665443
No 405
>COG4331 Predicted membrane protein [Function unknown]
Probab=23.89 E-value=3.3e+02 Score=20.68 Aligned_cols=59 Identities=15% Similarity=0.269 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHH----HhhhhHHHHHHHHHHHhhcC-------------CchhHHHHHHHHHHHHHHHHHHHHh
Q 032617 77 QKDFLDQLQMTLIK----AQAGVKNNMRRLNKSIVKHG-------------SNHIMHVVLFALFLFFILYMWSKMF 135 (137)
Q Consensus 77 Qn~lLD~l~~~~d~----~~~~L~~t~~rl~~v~~~~~-------------~~~~~~lil~~v~vffvly~l~k~~ 135 (137)
|.+++++-.|-..+ +.+.+..+...+..+.--+. .+.|-|=.-+++++.|++|=+++++
T Consensus 53 q~e~~e~~~diIanylm~~as~lS~ssq~F~a~YLl~HGaiKL~li~~LwkkklwaYPlsi~vl~lFI~YQlyr~~ 128 (167)
T COG4331 53 QAELLEDPSDIIANYLMMAASRLSNSSQHFAAFYLLSHGAIKLVLIALLWKKKLWAYPLSILVLVLFILYQLYRFF 128 (167)
T ss_pred HHHHhCCHHHHHHHHHHHHHHhcCchHHHHHHHHHHHccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence 45566665555555 66666666665544332111 1222333445667778888888764
No 406
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=23.86 E-value=86 Score=21.74 Aligned_cols=49 Identities=18% Similarity=0.259 Sum_probs=24.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 032617 47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGV 95 (137)
Q Consensus 47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L 95 (137)
.|=|..|+.|...+..|..--.....++..-+.-|+.+...-+.....|
T Consensus 21 ~eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l 69 (131)
T PF05103_consen 21 DEVDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRAL 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Confidence 4668888888888888876666666666655555555554444444444
No 407
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=23.68 E-value=1.5e+02 Score=20.69 Aligned_cols=10 Identities=50% Similarity=0.863 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 032617 121 ALFLFFILYM 130 (137)
Q Consensus 121 ~v~vffvly~ 130 (137)
++++|-++||
T Consensus 228 ~f~~~~i~yw 237 (237)
T PF02932_consen 228 AFILFNIVYW 237 (237)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhhC
Confidence 3334444443
No 408
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=23.43 E-value=3e+02 Score=20.91 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=32.3
Q ss_pred hhHhhhcchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032617 37 EIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKD 79 (137)
Q Consensus 37 ~~q~~~~~~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~ 79 (137)
++|.--.-+...-+..|+.|.+.+..|+..+..|-+|++.-..
T Consensus 38 ~iq~Ad~~~~~~t~~kL~~I~eQi~~Lq~QA~~ile~~~~~~~ 80 (159)
T PF10504_consen 38 QIQKADSAMRANTCNKLEVIAEQIRFLQEQARKILEEAERNEE 80 (159)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3443334445566788999999999999999999998876553
No 409
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=23.40 E-value=1e+02 Score=24.90 Aligned_cols=15 Identities=13% Similarity=0.202 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHhc
Q 032617 122 LFLFFILYMWSKMFR 136 (137)
Q Consensus 122 v~vffvly~l~k~~~ 136 (137)
+++++++|+++|+.+
T Consensus 47 ~V~~~~~~~~~k~R~ 61 (247)
T COG1622 47 PVIVLLVYFAWKYRA 61 (247)
T ss_pred HHHHHHHHHHhhhhh
Confidence 334566677777543
No 410
>PF07730 HisKA_3: Histidine kinase; InterPro: IPR011712 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represetns the dimerisation and phosphoacceptor domain of a sub-family of histidine kinases. It shares sequence similarity with IPR003661 from INTERPRO and IPR011102 from INTERPRO.; GO: 0000155 two-component sensor activity, 0046983 protein dimerization activity, 0000160 two-component signal transduction system (phosphorelay), 0016021 integral to membrane; PDB: 3GIE_B 3GIG_A 3EHJ_B 3EHH_B 3GIF_B 3EHF_B 3EHG_A.
Probab=23.26 E-value=1.8e+02 Score=17.46 Aligned_cols=51 Identities=8% Similarity=0.195 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617 54 TGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 54 d~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
|.+++.+..++-....+...+.... ++....++.....++.++..+..++.
T Consensus 11 D~v~q~L~~i~~~l~~~~~~~~~~~---~~~~~~l~~i~~~~~~~~~~~R~~~~ 61 (68)
T PF07730_consen 11 DGVGQSLTAIKMQLEALRRRLADDP---EEAREELEEIRELLREALQELRRIIH 61 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTT-H---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhcCCH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555554444444332211 14444455555555555555555444
No 411
>COG1585 Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=23.22 E-value=1.1e+02 Score=22.37 Aligned_cols=25 Identities=20% Similarity=0.467 Sum_probs=19.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhc
Q 032617 112 NHIMHVVLFALFLFFILYMWSKMFR 136 (137)
Q Consensus 112 ~~~~~lil~~v~vffvly~l~k~~~ 136 (137)
..++-+++|+++.++.+|++.|+.|
T Consensus 46 ~~~~q~v~f~~lsv~~~~l~rr~~~ 70 (140)
T COG1585 46 SWWLQLVLFAILSVLLALLGRRFVR 70 (140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556678888888888888888766
No 412
>PF07850 Renin_r: Renin receptor-like protein; InterPro: IPR012493 The sequences featured in this family are similar to a region of the human renin receptor (Q8NG15 from SWISSPROT) that bears a putative transmembrane spanning segment []. The renin receptor is involved in intracellular signal transduction by the activation of the ERK1/ERK2 pathway, and it also serves to increase the efficiency of angiotensinogen cleavage by receptor-bound renin, therefore facilitating angiotensin II generation and action on a cell surface []. ; GO: 0004872 receptor activity, 0016021 integral to membrane; PDB: 3LC8_A 3LBS_A.
Probab=23.16 E-value=27 Score=24.43 Aligned_cols=19 Identities=32% Similarity=0.369 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 032617 114 IMHVVLFALFLFFILYMWS 132 (137)
Q Consensus 114 ~~~lil~~v~vffvly~l~ 132 (137)
+|.+|+|++.++.+.|.++
T Consensus 59 LW~~v~l~~all~i~~~m~ 77 (98)
T PF07850_consen 59 LWFSVVLALALLAICYAMW 77 (98)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHhe
Confidence 4445556666666666554
No 413
>PRK14858 tatA twin arginine translocase protein A; Provisional
Probab=23.12 E-value=2.8e+02 Score=19.65 Aligned_cols=41 Identities=5% Similarity=0.037 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032617 52 EITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQA 93 (137)
Q Consensus 52 ~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~ 93 (137)
-.-.+...++.+|....++.+++++..+. .++.+..++...
T Consensus 28 lar~lGk~i~~fk~~~~d~k~~i~~E~~~-~e~~~~~~~~~~ 68 (108)
T PRK14858 28 LARSLGRGLAEFKKATDDFKQSMQEESRT-AEEKEKAEKLAE 68 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHH
Confidence 45567888899999999999999776655 344444444333
No 414
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=23.12 E-value=4.4e+02 Score=22.20 Aligned_cols=19 Identities=21% Similarity=0.289 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 032617 77 QKDFLDQLQMTLIKAQAGV 95 (137)
Q Consensus 77 Qn~lLD~l~~~~d~~~~~L 95 (137)
|..||+.|+..-.+...++
T Consensus 155 ~~~Ll~kL~~~k~Kl~kkl 173 (336)
T PF05055_consen 155 QSSLLEKLDSRKKKLRKKL 173 (336)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3335555444444444433
No 415
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=23.03 E-value=1e+02 Score=19.83 Aligned_cols=21 Identities=19% Similarity=0.709 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHH-HHHHHHh
Q 032617 115 MHVVLFALFLFFIL-YMWSKMF 135 (137)
Q Consensus 115 ~~lil~~v~vffvl-y~l~k~~ 135 (137)
+-+|+++.++||.+ |++-+++
T Consensus 7 iQii~l~AlI~~pLGyl~~~~~ 28 (62)
T PF11120_consen 7 IQIIILCALIFFPLGYLARRWL 28 (62)
T ss_pred HHHHHHHHHHHHhHHHHHHHHh
Confidence 33455555554444 5544433
No 416
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=23.00 E-value=4.5e+02 Score=21.95 Aligned_cols=25 Identities=12% Similarity=0.252 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHH
Q 032617 80 FLDQLQMTLIKAQAGVKNNMRRLNK 104 (137)
Q Consensus 80 lLD~l~~~~d~~~~~L~~t~~rl~~ 104 (137)
-.|.+...|..+.+.|+...++++.
T Consensus 222 ~~~e~~ee~~~~~~elre~~k~ik~ 246 (294)
T COG1340 222 KIDELHEEFRNLQNELRELEKKIKA 246 (294)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555543
No 417
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=22.99 E-value=7.2e+02 Score=24.31 Aligned_cols=59 Identities=19% Similarity=0.238 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617 49 LDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 49 qD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
.+...+.+.+.+..+..--..+.+++...+.-++++....++....+....+++..+..
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ 432 (1163)
T COG1196 374 LEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEA 432 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555556666666666666666666666666555555554444
No 418
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=22.85 E-value=4e+02 Score=23.53 Aligned_cols=56 Identities=16% Similarity=0.207 Sum_probs=27.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhc
Q 032617 47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKH 109 (137)
Q Consensus 47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~ 109 (137)
.++|+.|-.|...+..++-+-...=++++.|. +++.....+|..+.+--.++++++
T Consensus 313 ~~D~~~l~~le~~~~~mgPlid~~Le~idrk~-------~eL~~Ln~~l~~Al~lY~kLm~~~ 368 (462)
T KOG2199|consen 313 VQDDDDLLDLEAAVHQMGPLIDRKLEKIDRKH-------EELSQLNVKLLDALRLYNKLMNEA 368 (462)
T ss_pred cCCCHHHHHHHHHHHHhhhHHHHHHHHHHhhH-------HHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34455555555555555553333333344333 334444445555555555555543
No 419
>PF12277 DUF3618: Protein of unknown function (DUF3618); InterPro: IPR022062 This domain family is found in bacteria, and is approximately 50 amino acids in length.
Probab=22.82 E-value=1.8e+02 Score=17.28 Aligned_cols=41 Identities=22% Similarity=0.383 Sum_probs=26.7
Q ss_pred chhhHhhhcchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032617 35 SDEIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASF 76 (137)
Q Consensus 35 ~~~~q~~~~~~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~ 76 (137)
.+++...++.--.+-...+|+|..+++ -++++.+-.+.++.
T Consensus 5 ~~~ie~dIe~tR~~La~tvd~L~~r~~-P~~~a~~~~~~~r~ 45 (49)
T PF12277_consen 5 PDEIERDIERTRAELAETVDELAARLS-PKRLADEAKERVRA 45 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHH
Confidence 356666665555566777888887777 66666666665554
No 420
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=22.81 E-value=2.4e+02 Score=18.71 Aligned_cols=62 Identities=11% Similarity=0.243 Sum_probs=32.3
Q ss_pred HhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617 47 ADLDDEITGLRSQVKQLRN-VAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK 108 (137)
Q Consensus 47 ~eqD~~Ld~L~~~V~~LK~-va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~ 108 (137)
.+-+...+.|.+.+..-+. +-..|..+-+.....|+..-..+...-..|..+...+..++..
T Consensus 42 ~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l~~~~~~~e~~l~~ 104 (127)
T smart00502 42 AQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEKLSHAINFTEEALNS 104 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344444444444444443 4444555544555555555555555555566666666666554
No 421
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=22.76 E-value=89 Score=27.55 Aligned_cols=26 Identities=8% Similarity=-0.082 Sum_probs=18.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhc
Q 032617 111 SNHIMHVVLFALFLFFILYMWSKMFR 136 (137)
Q Consensus 111 ~~~~~~lil~~v~vffvly~l~k~~~ 136 (137)
..-.||-+++++.+++-+|+..|.+|
T Consensus 21 ~~I~~YGl~ialGil~a~~l~~r~~k 46 (460)
T PRK13108 21 LPVRAYAVCVITGIIVALLIGDRRLT 46 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888777777766655
No 422
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=22.54 E-value=5.2e+02 Score=27.06 Aligned_cols=71 Identities=14% Similarity=0.262 Sum_probs=51.8
Q ss_pred hhHhhhcchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617 37 EIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 37 ~~q~~~~~~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
....+++.++.+--..-..+.+.++.+|.+..+-.-.+......+|.+...++++...|......+..+-.
T Consensus 802 ~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~ 872 (1822)
T KOG4674|consen 802 KCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEI 872 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444445557778888888888888888888889999998888888888877777666544
No 423
>PRK00442 tatA twin arginine translocase protein A; Provisional
Probab=22.49 E-value=72 Score=22.08 Aligned_cols=10 Identities=40% Similarity=0.790 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 032617 117 VVLFALFLFF 126 (137)
Q Consensus 117 lil~~v~vff 126 (137)
+|+++++++|
T Consensus 11 iIlvIvlllF 20 (92)
T PRK00442 11 VILVVVVLVF 20 (92)
T ss_pred HHHHHHHHHh
Confidence 3444333333
No 424
>PF14963 CAML: Calcium signal-modulating cyclophilin ligand
Probab=22.45 E-value=2.6e+02 Score=22.94 Aligned_cols=27 Identities=4% Similarity=0.121 Sum_probs=13.7
Q ss_pred hhhHHHHHHHHHHHhhcCCchhHHHHHHHHH
Q 032617 93 AGVKNNMRRLNKSIVKHGSNHIMHVVLFALF 123 (137)
Q Consensus 93 ~~L~~t~~rl~~v~~~~~~~~~~~lil~~v~ 123 (137)
++.-+|.++|..++.. .+||++.|+++
T Consensus 229 ~r~~~t~~~~~~~~~D----lcvy~F~fi~~ 255 (263)
T PF14963_consen 229 SRSMDTYSKMGDVFTD----LCVYFFTFIFC 255 (263)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 3445556666666663 34444444433
No 425
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=22.36 E-value=3.4e+02 Score=20.27 Aligned_cols=48 Identities=13% Similarity=0.140 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 032617 49 LDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVK 96 (137)
Q Consensus 49 qD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~ 96 (137)
--..++.+...+......+..+.+.+..-..........+..+...+.
T Consensus 37 i~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 84 (262)
T smart00283 37 VAANADEIAATAQSAAEAAEEGREAVEDAITAMDQIREVVEEAVSAVE 84 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555444444444444444333333
No 426
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=22.28 E-value=3.7e+02 Score=20.70 Aligned_cols=58 Identities=14% Similarity=0.245 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 032617 48 DLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKS 105 (137)
Q Consensus 48 eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v 105 (137)
+.|..+..|..+|..|+.-+..+..+-+.-.+-+..+....+.....+.++--++..+
T Consensus 128 ~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~~ 185 (190)
T PF05266_consen 128 ELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQSV 185 (190)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666655555444444444433444444444544444444444444433
No 427
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=22.18 E-value=5.4e+02 Score=22.58 Aligned_cols=61 Identities=20% Similarity=0.275 Sum_probs=29.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hhHHHHHHHHHHHh
Q 032617 47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQA-------GVKNNMRRLNKSIV 107 (137)
Q Consensus 47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~-------~L~~t~~rl~~v~~ 107 (137)
.++.+....|.+.+..++.=-..|..++.+-..-|+.++...+.... .-..-..++.+++.
T Consensus 55 ~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~ 122 (420)
T COG4942 55 REQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLA 122 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555554444444554444444444444444433 33334444555544
No 428
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=22.11 E-value=1e+02 Score=27.36 Aligned_cols=18 Identities=6% Similarity=0.268 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032617 117 VVLFALFLFFILYMWSKM 134 (137)
Q Consensus 117 lil~~v~vffvly~l~k~ 134 (137)
+|++++..|+++||+++.
T Consensus 47 ~iva~vaav~llwwlv~~ 64 (531)
T COG3898 47 IIVALVAAVLLLWWLVRS 64 (531)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455666677888888775
No 429
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=22.11 E-value=2.1e+02 Score=26.78 Aligned_cols=38 Identities=11% Similarity=0.099 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHh
Q 032617 94 GVKNNMRRLNKSIVKHGSNHIMHVVLFALFLFFILYMWSKMF 135 (137)
Q Consensus 94 ~L~~t~~rl~~v~~~~~~~~~~~lil~~v~vffvly~l~k~~ 135 (137)
+|.++.+|+...++= +--.+++++++..++..|+.++|
T Consensus 334 RLGRVaRKLD~YlEY----GAA~LvLLlC~y~lvAHWlACiW 371 (971)
T KOG0501|consen 334 RLGRVARKLDHYLEY----GAAVLVLLLCVYGLVAHWLACIW 371 (971)
T ss_pred HHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHhh
Confidence 566677777777763 23334555555556666666554
No 430
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=22.10 E-value=2.4e+02 Score=18.56 Aligned_cols=54 Identities=19% Similarity=0.297 Sum_probs=42.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 032617 47 ADLDDEITGLRSQVKQLRNVAQE---IHSEASFQKDFLDQLQMTLIKAQAGVKNNMR 100 (137)
Q Consensus 47 ~eqD~~Ld~L~~~V~~LK~va~~---I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~ 100 (137)
.+-+...+.|..+++..|.+-.. |..-+++|..-|..++.....-...|.+-..
T Consensus 24 kd~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~ 80 (83)
T PF07544_consen 24 KDLDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFKE 80 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888999999998887766 7778888888888888888777666655443
No 431
>COG4640 Predicted membrane protein [Function unknown]
Probab=22.10 E-value=87 Score=27.45 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 032617 114 IMHVVLFALFLFFILYMWSKMF 135 (137)
Q Consensus 114 ~~~lil~~v~vffvly~l~k~~ 135 (137)
.|..++|++++++++|++.|.|
T Consensus 54 ~was~a~~lIlii~~~~fgk~f 75 (465)
T COG4640 54 PWASGAFILILIIILFFFGKNF 75 (465)
T ss_pred hhHHHHHHHHHHHHHHHHhhcc
Confidence 3444555566666677776654
No 432
>PF11027 DUF2615: Protein of unknown function (DUF2615); InterPro: IPR020309 This entry represents a group of uncharacterised protein from the Metazoa, including CD034 (or C4orf34) and YQF4 (or C34C12.4).
Probab=21.99 E-value=1.2e+02 Score=21.44 Aligned_cols=12 Identities=33% Similarity=0.368 Sum_probs=8.3
Q ss_pred HHHHHHHHHHhh
Q 032617 97 NNMRRLNKSIVK 108 (137)
Q Consensus 97 ~t~~rl~~v~~~ 108 (137)
.+|+||-.++++
T Consensus 16 ~AMrRLl~~LRq 27 (103)
T PF11027_consen 16 MAMRRLLNLLRQ 27 (103)
T ss_pred HHHHHHHHHHHH
Confidence 467777777775
No 433
>PF07225 NDUF_B4: NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4); InterPro: IPR009866 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family contains human NADH-ubiquinone oxidoreductase subunit NDUFB4 and related sequences.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0005739 mitochondrion
Probab=21.92 E-value=92 Score=22.68 Aligned_cols=25 Identities=16% Similarity=0.142 Sum_probs=16.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhc
Q 032617 112 NHIMHVVLFALFLFFILYMWSKMFR 136 (137)
Q Consensus 112 ~~~~~lil~~v~vffvly~l~k~~~ 136 (137)
+..++.++++++-++++|+++|--|
T Consensus 81 ktsllg~~~~v~P~i~~~~~~KtdR 105 (125)
T PF07225_consen 81 KTSLLGLGFGVVPLIFYYYVLKTDR 105 (125)
T ss_pred hHHHHHHHHHHHHHHHHHhhhccch
Confidence 4445556666667778888877543
No 434
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=21.85 E-value=6.6e+02 Score=23.43 Aligned_cols=49 Identities=12% Similarity=0.239 Sum_probs=27.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhHHHHH
Q 032617 47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQ-KDFLDQLQMTLIKAQAGVKNNMR 100 (137)
Q Consensus 47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Q-n~lLD~l~~~~d~~~~~L~~t~~ 100 (137)
.++++.|++|.. -+++-.|..-++.| .+||.+.+-+|+..++-|.--..
T Consensus 66 ~~~~~~~~~l~~-----~~~~~a~~~~~~~~~~k~l~~~~l~~~~~~~~l~~~~~ 115 (757)
T KOG4368|consen 66 QQQEQHLLALRQ-----EQVTAAVAHAVEQQMQKLLEETQLDMNEFDNLLQPIID 115 (757)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 677888888753 23334444333333 24777776666666665554333
No 435
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=21.77 E-value=81 Score=23.35 Aligned_cols=20 Identities=20% Similarity=0.288 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 032617 117 VVLFALFLFFILYMWSKMFR 136 (137)
Q Consensus 117 lil~~v~vffvly~l~k~~~ 136 (137)
.++|.+++-.++|++++|-|
T Consensus 108 ~il~~i~is~~~~~~yr~~r 127 (139)
T PHA03099 108 LVLVGIIITCCLLSVYRFTR 127 (139)
T ss_pred HHHHHHHHHHHHHhhheeee
Confidence 34455555566677777766
No 436
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=21.75 E-value=2.8e+02 Score=19.13 Aligned_cols=57 Identities=18% Similarity=0.265 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 032617 50 DDEITGLRSQVKQLRNVAQEIHSEASFQ--KDFLDQLQMTLIKAQAGVKNNMRRLNKSI 106 (137)
Q Consensus 50 D~~Ld~L~~~V~~LK~va~~I~~Ev~~Q--n~lLD~l~~~~d~~~~~L~~t~~rl~~v~ 106 (137)
.+.++.|.+.+.....=-..+..+++.- .+-+.+|.-.+.+..+.++....+++.+.
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~ 92 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVS 92 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4455555555544444333455555544 44455555555555555555555554443
No 437
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=21.75 E-value=48 Score=28.38 Aligned_cols=8 Identities=13% Similarity=0.335 Sum_probs=3.8
Q ss_pred HHHHHHHH
Q 032617 125 FFILYMWS 132 (137)
Q Consensus 125 ffvly~l~ 132 (137)
-|+.|||+
T Consensus 385 GfLcWwf~ 392 (397)
T PF03302_consen 385 GFLCWWFI 392 (397)
T ss_pred HHHhhhee
Confidence 34445554
No 438
>PRK05529 cell division protein FtsQ; Provisional
Probab=21.74 E-value=1e+02 Score=24.65 Aligned_cols=16 Identities=6% Similarity=0.125 Sum_probs=6.0
Q ss_pred HHHHHhhcCCchhHHH
Q 032617 102 LNKSIVKHGSNHIMHV 117 (137)
Q Consensus 102 l~~v~~~~~~~~~~~l 117 (137)
+.++..+...+..+++
T Consensus 24 ~~~~~~~~~~r~~~~~ 39 (255)
T PRK05529 24 VRRFTTRIRRRFILLA 39 (255)
T ss_pred hhchhhhccchhhhHH
Confidence 3334443333333333
No 439
>PHA03072 putative viral membrane protein; Provisional
Probab=21.69 E-value=1.7e+02 Score=22.80 Aligned_cols=34 Identities=15% Similarity=0.290 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHH
Q 032617 96 KNNMRRLNKSIVKHGSNHIMHVVLFALFLFFILY 129 (137)
Q Consensus 96 ~~t~~rl~~v~~~~~~~~~~~lil~~v~vffvly 129 (137)
.=+..+..+..+-++....|+.++++++-.+++|
T Consensus 14 ~Y~Re~~~k~i~~a~~sTl~ff~l~L~iS~llf~ 47 (190)
T PHA03072 14 EYAREKATKSIRAAKTSTLIFFVIILAISVLLLW 47 (190)
T ss_pred HhHHhhHhhhhhhhhhhhHHHHHHHHHHHHHHHh
Confidence 3344455555554444556655555444333333
No 440
>PF08649 DASH_Dad1: DASH complex subunit Dad1; InterPro: IPR013958 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules []. Throughout the cell cycle Dad1 remains bound to kinetochores and its association is dependent on the Mis6 and Mal2 [].
Probab=21.66 E-value=2.2e+02 Score=17.95 Aligned_cols=30 Identities=10% Similarity=0.196 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617 78 KDFLDQLQMTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 78 n~lLD~l~~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
..++.++..+|+..-+.+..-.+.+..++.
T Consensus 8 ~~Li~eI~~~~e~vl~nlN~LNRsLE~~i~ 37 (58)
T PF08649_consen 8 DRLIQEISESMESVLNNLNALNRSLESVIS 37 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 346777777777777777666666666655
No 441
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=21.50 E-value=5.7e+02 Score=23.26 Aligned_cols=75 Identities=15% Similarity=0.200 Sum_probs=60.8
Q ss_pred CchhhHhhhcchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617 34 GSDEIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK 108 (137)
Q Consensus 34 ~~~~~q~~~~~~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~ 108 (137)
+.++++..++.+-.-+++++..|..--.....--....-|+..-.++|+.-...+...+.+|+-+.+.+...++.
T Consensus 11 ~f~~l~r~~~~l~~g~e~ef~rl~k~fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~ 85 (604)
T KOG3564|consen 11 LFEQLVRDIEILGEGNEDEFIRLRKDFEDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKR 85 (604)
T ss_pred hHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHH
Confidence 446777777777566777888887777777777777788888888899999999999999999999988888775
No 442
>PRK13414 flagellar biosynthesis protein FliZ; Provisional
Probab=21.43 E-value=1.4e+02 Score=23.27 Aligned_cols=20 Identities=45% Similarity=1.055 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032617 115 MHVVLFALFLFFILYMWSKM 134 (137)
Q Consensus 115 ~~lil~~v~vffvly~l~k~ 134 (137)
..+++|.+++||+++++-|+
T Consensus 66 v~ivLF~L~~~~~~FL~KKm 85 (209)
T PRK13414 66 VTIVLFFLIFFFIIFLFKKM 85 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555444
No 443
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=21.42 E-value=5e+02 Score=23.74 Aligned_cols=18 Identities=22% Similarity=0.578 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032617 117 VVLFALFLFFILYMWSKM 134 (137)
Q Consensus 117 lil~~v~vffvly~l~k~ 134 (137)
++++++++||++||+.++
T Consensus 157 ~~~~~~~~~~~i~~lr~~ 174 (574)
T COG3850 157 MLLILLLVVFTIYWLRRR 174 (574)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455556667777776553
No 444
>PF15206 FAM209: FAM209 family
Probab=21.38 E-value=37 Score=25.44 Aligned_cols=12 Identities=25% Similarity=0.373 Sum_probs=8.1
Q ss_pred HHHHHHHHHHhc
Q 032617 125 FFILYMWSKMFR 136 (137)
Q Consensus 125 ffvly~l~k~~~ 136 (137)
++++|+++|+.+
T Consensus 47 vv~lyvilKf~g 58 (150)
T PF15206_consen 47 VVVLYVILKFRG 58 (150)
T ss_pred HHHHHheeEecc
Confidence 466788888643
No 445
>COG2966 Uncharacterized conserved protein [Function unknown]
Probab=21.37 E-value=3.8e+02 Score=21.58 Aligned_cols=27 Identities=4% Similarity=0.217 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617 82 DQLQMTLIKAQAGVKNNMRRLNKSIVK 108 (137)
Q Consensus 82 D~l~~~~d~~~~~L~~t~~rl~~v~~~ 108 (137)
+++...++.-.-.++.+.++++++.++
T Consensus 93 ~~i~~~v~~~~~~~e~a~~~l~~i~~~ 119 (250)
T COG2966 93 NRISRAVEHGRLDLEEAHKKLDEIQKQ 119 (250)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHhhhC
Confidence 344444444445555666666666543
No 446
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=21.32 E-value=3.1e+02 Score=19.43 Aligned_cols=42 Identities=12% Similarity=0.131 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 032617 48 DLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVK 96 (137)
Q Consensus 48 eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~ 96 (137)
|-.++-+..-.++...+.+ ++.||.|+-.=..+.|+....+.
T Consensus 65 ES~~Er~K~~~s~~~~q~L-------m~rQN~mm~~qqqsidslsksvg 106 (121)
T PF10669_consen 65 ESKRERQKFIWSMNKQQSL-------MNRQNNMMKQQQQSIDSLSKSVG 106 (121)
T ss_pred hhHHHHHhHHhhhhHHHHH-------HHHHhHHHHHHHHhHHHHHHHHH
Confidence 3344444444555555544 44455555444444444443333
No 447
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=21.30 E-value=3.9e+02 Score=20.54 Aligned_cols=33 Identities=21% Similarity=0.311 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032617 48 DLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQ 83 (137)
Q Consensus 48 eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~ 83 (137)
|-+...+.|...|...+ .++.+|+++.++-++.
T Consensus 106 eL~~tf~rL~~~Vd~~~---~eL~~eI~~L~~~i~~ 138 (171)
T PF04799_consen 106 ELSSTFARLCQQVDQTK---NELEDEIKQLEKEIQR 138 (171)
T ss_dssp ----HHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 44555666666555433 3555555544443333
No 448
>PHA02675 ORF104 fusion protein; Provisional
Probab=21.27 E-value=2.8e+02 Score=18.98 Aligned_cols=46 Identities=13% Similarity=0.106 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 032617 57 RSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRL 102 (137)
Q Consensus 57 ~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl 102 (137)
...+.+|-..-..|-+.-+.-+..|+.|+...+.....|-.-.+||
T Consensus 36 e~RL~~L~k~~~~i~~cC~~~~~~L~RLE~H~ETLRk~Ml~L~KKI 81 (90)
T PHA02675 36 EERLVSLLDSYKTITDCCRETGARLDRLERHLETLREALLKLNTKI 81 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344444444556666677777888888888877665555555544
No 449
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=21.19 E-value=78 Score=30.60 Aligned_cols=20 Identities=10% Similarity=0.419 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 032617 117 VVLFALFLFFILYMWSKMFR 136 (137)
Q Consensus 117 lil~~v~vffvly~l~k~~~ 136 (137)
++.-++++++|+|++++.||
T Consensus 335 L~~a~~lVv~Vi~lFL~~~r 354 (1009)
T COG0841 335 LFEAIVLVVLVMYLFLGNLR 354 (1009)
T ss_pred HHHHHHHHHHHHHHhhhhcc
Confidence 44455556677777777665
No 450
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=21.15 E-value=1.8e+02 Score=16.68 Aligned_cols=12 Identities=17% Similarity=0.700 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 032617 120 FALFLFFILYMW 131 (137)
Q Consensus 120 ~~v~vffvly~l 131 (137)
..+++||+-.++
T Consensus 9 y~vV~ffv~LFi 20 (36)
T PF02532_consen 9 YTVVIFFVSLFI 20 (36)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhHHHHHHHHh
Confidence 334444443333
No 451
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=21.12 E-value=5.5e+02 Score=22.25 Aligned_cols=12 Identities=42% Similarity=0.639 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHH
Q 032617 65 NVAQEIHSEASF 76 (137)
Q Consensus 65 ~va~~I~~Ev~~ 76 (137)
.++..+++|+.+
T Consensus 304 ~ia~elhdeI~~ 315 (495)
T PRK11644 304 DVARELHDEIGQ 315 (495)
T ss_pred HHHHHhhhhhhh
Confidence 477777777664
No 452
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=21.07 E-value=3.6e+02 Score=23.46 Aligned_cols=43 Identities=9% Similarity=0.108 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617 66 VAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK 108 (137)
Q Consensus 66 va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~ 108 (137)
-...+.++++.-++-++.++..+++...+|.+-..+|..++.+
T Consensus 407 ~~~~l~~~i~~l~~~i~~~~~rl~~~e~rl~~qF~ame~~~s~ 449 (462)
T PRK08032 407 ATDGVNKTLKKLTKQYNAVSDSIDATIARYKAQFTQLDKLMTS 449 (462)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666666666677777777777777777777777777665
No 453
>PRK04654 sec-independent translocase; Provisional
Probab=21.05 E-value=4.3e+02 Score=21.04 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 032617 79 DFLDQLQMTLIKAQAGVKNNMRRLNKSI 106 (137)
Q Consensus 79 ~lLD~l~~~~d~~~~~L~~t~~rl~~v~ 106 (137)
.-+.++.+.+.++.+.++.+.+-++...
T Consensus 68 ~~i~~~~~~lk~~~~el~q~a~~~~~~~ 95 (214)
T PRK04654 68 ASLREAEDQLRNTQQQVEQGARALHDDV 95 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3456666666666666666666666444
No 454
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=21.05 E-value=4.4e+02 Score=21.10 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032617 50 DDEITGLRSQVKQLRNVAQEIHSEAS 75 (137)
Q Consensus 50 D~~Ld~L~~~V~~LK~va~~I~~Ev~ 75 (137)
-.+|+.|..-|.+||..-.....|++
T Consensus 60 ~~ql~~lq~ev~~LrG~~E~~~~~l~ 85 (263)
T PRK10803 60 QQQLSDNQSDIDSLRGQIQENQYQLN 85 (263)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 45566666666666654444444444
No 455
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=21.04 E-value=3.7e+02 Score=27.28 Aligned_cols=60 Identities=17% Similarity=0.156 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617 48 DLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 48 eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
+-.++|.++...+..+-.-=.+|.+++..-++-|+.|+.+++.+...++.-..++.++-.
T Consensus 1236 ~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~ik~ 1295 (1758)
T KOG0994|consen 1236 SLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKIKE 1295 (1758)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444444444444444344666777777777777777777766666655555555444
No 456
>PF11657 Activator-TraM: Transcriptional activator TraM
Probab=21.02 E-value=3.6e+02 Score=20.05 Aligned_cols=10 Identities=10% Similarity=0.096 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 032617 54 TGLRSQVKQL 63 (137)
Q Consensus 54 d~L~~~V~~L 63 (137)
.+|.+-..+.
T Consensus 53 ~elE~~~~~w 62 (144)
T PF11657_consen 53 EELEEIASRW 62 (144)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 457
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=21.00 E-value=3.5e+02 Score=19.95 Aligned_cols=25 Identities=16% Similarity=-0.135 Sum_probs=12.3
Q ss_pred chhHHHHHHHHH-HHHHHHHHHHHhc
Q 032617 112 NHIMHVVLFALF-LFFILYMWSKMFR 136 (137)
Q Consensus 112 ~~~~~lil~~v~-vffvly~l~k~~~ 136 (137)
..++++++++++ ++++...++.++|
T Consensus 116 ~~~~~i~~~i~g~ll~i~~giy~~~r 141 (145)
T PF10661_consen 116 PISPTILLSIGGILLAICGGIYVVLR 141 (145)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444443 3455555555565
No 458
>PF08181 DegQ: DegQ (SacQ) family; InterPro: IPR012554 This family consists of the DegQ (formerly sacQ) regulatory peptides. The DegQ family of peptides control the rates of synthesis of a class of both secreted and intracellular degradative enzymes in Bacillus subtilis. DegQ is 46 amino acids long and activates the synthesis of degradative enzymes. The expression of this peptide was shown to be subjected both to catabolite repression and DegS-DegU-mediated control. Thus allowing an increase in the rate of synthesis of degQ under conditions of nitrogen starvation [].
Probab=20.99 E-value=2e+02 Score=17.08 Aligned_cols=26 Identities=15% Similarity=0.275 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032617 63 LRNVAQEIHSEASFQKDFLDQLQMTL 88 (137)
Q Consensus 63 LK~va~~I~~Ev~~Qn~lLD~l~~~~ 88 (137)
+|++--.+.+|+++-.+-|-+++.+.
T Consensus 9 lkqll~rle~eirett~sl~ninksi 34 (46)
T PF08181_consen 9 LKQLLWRLENEIRETTDSLRNINKSI 34 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34444444444444444444444333
No 459
>PRK09731 putative general secretion pathway protein YghD; Provisional
Probab=20.99 E-value=1.2e+02 Score=23.32 Aligned_cols=18 Identities=11% Similarity=0.169 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032617 115 MHVVLFALFLFFILYMWS 132 (137)
Q Consensus 115 ~~lil~~v~vffvly~l~ 132 (137)
+.+++.+++++.++|+++
T Consensus 39 ll~~~g~vL~l~i~Y~~i 56 (178)
T PRK09731 39 MLLAAVVFLFSVGYYVLI 56 (178)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334555555555556554
No 460
>PRK10869 recombination and repair protein; Provisional
Probab=20.96 E-value=4.8e+02 Score=23.30 Aligned_cols=59 Identities=12% Similarity=0.139 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617 49 LDDEITGLRSQVKQLRNVAQEIH----------SEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 49 qD~~Ld~L~~~V~~LK~va~~I~----------~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
+.++|+.+.+.+..++.+...-| ++++.+-+.|++.++........+....+++.....
T Consensus 294 dp~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~ 362 (553)
T PRK10869 294 DPNRLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQ 362 (553)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888776655 344455555555555555555555555555554443
No 461
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=20.90 E-value=5.2e+02 Score=22.23 Aligned_cols=17 Identities=29% Similarity=0.593 Sum_probs=6.6
Q ss_pred hHHHHHHHHHHHHHHHH
Q 032617 49 LDDEITGLRSQVKQLRN 65 (137)
Q Consensus 49 qD~~Ld~L~~~V~~LK~ 65 (137)
.|++.-.|...+..|+.
T Consensus 33 ld~~~r~l~~~~~~lr~ 49 (425)
T PRK05431 33 LDEERRELQTELEELQA 49 (425)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333443333
No 462
>PF05827 ATP-synt_S1: Vacuolar ATP synthase subunit S1 (ATP6S1); InterPro: IPR024722 This family consists of metazoan vacuolar ATP synthase subunit S1 proteins [] and fungal proteins belonging to the BIG family. In Candida albicans BIG is required for normal beta-1,6-glucan synthesis, hyphal morphogenesis, adhesion and virulence [].
Probab=20.86 E-value=1.3e+02 Score=24.03 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 032617 113 HIMHVVLFALFLFFILYMWSKM 134 (137)
Q Consensus 113 ~~~~lil~~v~vffvly~l~k~ 134 (137)
++|..++++++++.|+|+-+++
T Consensus 258 gi~mglii~~~ll~IL~~gl~~ 279 (282)
T PF05827_consen 258 GIWMGLIISLVLLSILYVGLSM 279 (282)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 4565566666666666666654
No 463
>PF13850 ERGIC_N: Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
Probab=20.82 E-value=1.6e+02 Score=19.91 Aligned_cols=25 Identities=12% Similarity=0.280 Sum_probs=15.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHH
Q 032617 110 GSNHIMHVVLFALFLFFILYMWSKM 134 (137)
Q Consensus 110 ~~~~~~~lil~~v~vffvly~l~k~ 134 (137)
...+.+.++.+++++++++.=+..+
T Consensus 20 ~~Gg~iSi~~~~~~~~L~~~E~~~y 44 (96)
T PF13850_consen 20 SSGGIISIITIVLIVILFISELYSY 44 (96)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777766666666555444
No 464
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=20.73 E-value=1e+02 Score=21.35 Aligned_cols=17 Identities=24% Similarity=0.526 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032617 116 HVVLFALFLFFILYMWS 132 (137)
Q Consensus 116 ~lil~~v~vffvly~l~ 132 (137)
++++++++++-++|.|+
T Consensus 42 i~~lvaVg~~YL~y~~f 58 (91)
T PF01708_consen 42 IFTLVAVGCLYLAYTWF 58 (91)
T ss_pred ehHHHHHHHHHHHHHHH
No 465
>PRK07521 flgK flagellar hook-associated protein FlgK; Validated
Probab=20.71 E-value=3.3e+02 Score=23.79 Aligned_cols=54 Identities=22% Similarity=0.331 Sum_probs=0.0
Q ss_pred hhhHhhhcchhHhhHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHH-HHHHHHHHHH
Q 032617 36 DEIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHS---------EASFQKD-FLDQLQMTLI 89 (137)
Q Consensus 36 ~~~q~~~~~~~~eqD~~Ld~L~~~V~~LK~va~~I~~---------Ev~~Qn~-lLD~l~~~~d 89 (137)
.+++.....++.|-+..++++-+-+.++..+-..|.. ++.+|-+ +||+|..-++
T Consensus 143 ~~L~~~~~~~~~~i~~~V~~iN~l~~~Ia~LN~~I~~~~~~g~~~ndL~DqRD~ll~~LS~~v~ 206 (483)
T PRK07521 143 DAVQSARADADAEIADSVDTLNDLLAQFEDANNAVVSGTATGRDASDALDQRDKLLKQISQIVG 206 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHHhhcC
No 466
>PF10857 DUF2701: Protein of unknown function (DUF2701); InterPro: IPR022586 This entry represents viral proteins with unknown function. The entry contains ORF C51 from Swinepox virus (strain Kasza).
Probab=20.69 E-value=73 Score=20.57 Aligned_cols=19 Identities=21% Similarity=0.326 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 032617 117 VVLFALFLFFILYMWSKMF 135 (137)
Q Consensus 117 lil~~v~vffvly~l~k~~ 135 (137)
+++.++++.+++.+++||+
T Consensus 4 ~~vvi~i~~~lllyLvkws 22 (63)
T PF10857_consen 4 FVVVIVILAYLLLYLVKWS 22 (63)
T ss_pred EeeHHHHHHHHHHHHHHHH
No 467
>PF13618 Gluconate_2-dh3: Gluconate 2-dehydrogenase subunit 3
Probab=20.58 E-value=2.8e+02 Score=19.13 Aligned_cols=60 Identities=23% Similarity=0.289 Sum_probs=0.0
Q ss_pred CCCCCCCCCCchhhHhhhcchhHhh--HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Q 032617 25 EGLTTRPVAGSDEIQLRIDPVNADL--DDEITGLRSQVKQLRNVA--------QEIHSEASFQKDFLDQLQMT 87 (137)
Q Consensus 25 ~g~~~r~~~~~~~~q~~~~~~~~eq--D~~Ld~L~~~V~~LK~va--------~~I~~Ev~~Qn~lLD~l~~~ 87 (137)
|..++ |.++.-.+-..++.+..+. .+.-+.+...+..|...+ .++..+ +|..+|+.++.+
T Consensus 17 P~~~~-pgA~~~~v~~fId~~l~~~~~~~~~~~~~~gl~~ld~~a~~~~g~~F~~l~~~--~~~~lL~~~~~~ 86 (131)
T PF13618_consen 17 PADDT-PGASDAGVPEFIDRMLADCYMPEDRRAFRAGLAALDAYAQKRYGKSFAELSPA--QREALLDALEKS 86 (131)
T ss_pred CCCCC-CChhhcChHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhCCChhhCCHH--HHHHHHHHHHhc
No 468
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=20.55 E-value=2.8e+02 Score=21.56 Aligned_cols=43 Identities=12% Similarity=0.140 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032617 49 LDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQA 93 (137)
Q Consensus 49 qD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~ 93 (137)
|=+.++.|..+...||.+-..|. ++.=.+++|++.+.++.+..
T Consensus 106 ~~ev~~aLk~g~~aLK~~~k~~~--idkVd~lmDei~E~~e~~~E 148 (191)
T PTZ00446 106 HKIAVNALSYAANTHKKLNNEIN--TQKVEKIIDTIQENKDIQEE 148 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHH
No 469
>PHA00646 hypothetical protein
Probab=20.54 E-value=1.5e+02 Score=19.08 Aligned_cols=19 Identities=21% Similarity=0.258 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 032617 116 HVVLFALFLFFILYMWSKM 134 (137)
Q Consensus 116 ~lil~~v~vffvly~l~k~ 134 (137)
.+|.+=+++||..|+.+-+
T Consensus 38 ~MVgIWlvI~Fl~Wf~i~m 56 (65)
T PHA00646 38 LMVGIWLVILFLTWFSLWM 56 (65)
T ss_pred hHHHHHHHHHHHHHHHHHH
No 470
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.50 E-value=1.4e+02 Score=24.41 Aligned_cols=26 Identities=15% Similarity=0.439 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhcC
Q 032617 112 NHIMHVVLFALFLFFILYMWSKMFRR 137 (137)
Q Consensus 112 ~~~~~lil~~v~vffvly~l~k~~~~ 137 (137)
+..|++|++.++.|+.+.++.++.-|
T Consensus 251 ~ra~fli~lgvLafi~~i~lM~rlGr 276 (299)
T KOG3970|consen 251 KRALFLIFLGVLAFITIIMLMKRLGR 276 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
No 471
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=20.43 E-value=3.7e+02 Score=20.06 Aligned_cols=66 Identities=11% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHH
Q 032617 57 RSQVKQLRNVAQEIHSE-ASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLFALFLFFI 127 (137)
Q Consensus 57 ~~~V~~LK~va~~I~~E-v~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~~~~~~~lil~~v~vffv 127 (137)
.+-...|++++..+|.- ++.|.+.|+-.-..++......+...++=.|+.+ ..=++..++++++|+
T Consensus 104 ~~d~eiL~~lG~~LG~~D~e~Q~k~i~L~~~~L~~~~~~a~~~~~k~~Kmy~-----~LGvl~Gl~lvIll~ 170 (170)
T TIGR02833 104 KSEKEILLQFGKTLGESDREGQQKHINLTLEHLERQLTEAEDEQKKNEKMYR-----YLGVLVGLMIVLLLL 170 (170)
T ss_pred HHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH-----HHHHHHHHHHHHHhC
No 472
>TIGR01760 tape_meas_TP901 phage tail tape measure protein, TP901 family, core region. This model represents a reasonably well conserved core region of a family of phage tail proteins. The member from phage TP901-1 was characterized as a tail length tape measure protein in that a shortened form of the protein leads to phage with proportionately shorter tails.
Probab=20.36 E-value=4.6e+02 Score=21.11 Aligned_cols=76 Identities=14% Similarity=0.183 Sum_probs=0.0
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCchhHHHHHHHHHH
Q 032617 45 VNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLFALFL 124 (137)
Q Consensus 45 ~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~~~~~~~lil~~v~v 124 (137)
++++.+...+.+..++.+|++--.++..++- +.+...+...-..+......+..+.+. ...+...|..++..
T Consensus 273 ~~~~~~~~~~t~~~~~~~l~~~~~~~~~~ig------~~l~p~l~~~~~~~~~~~~~~~~~~~~--~p~l~~~i~~~~aa 344 (350)
T TIGR01760 273 AKKEADKMLDTLKGQLKLLQNAIENAFIELG------EALLPALRELAQALTKLINAINGLAKE--NPQLAVTLAAVAAA 344 (350)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH------HHhhHHHHHHHHHHHHHHHHHHHhhHh--ChHHHHHHHHHHHH
Q ss_pred HHHH
Q 032617 125 FFIL 128 (137)
Q Consensus 125 ffvl 128 (137)
+..+
T Consensus 345 ~~~l 348 (350)
T TIGR01760 345 ILAL 348 (350)
T ss_pred HHhh
No 473
>PRK03100 sec-independent translocase; Provisional
Probab=20.30 E-value=3.6e+02 Score=19.86 Aligned_cols=43 Identities=21% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhh
Q 032617 51 DEITGLRSQVKQLRNVAQEIHSEASFQKDF-LDQLQMTLIKAQA 93 (137)
Q Consensus 51 ~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~l-LD~l~~~~d~~~~ 93 (137)
+.+-.++..|..+|..+.++.+++++.-.- +|++...+.....
T Consensus 28 ~~~r~lG~~vr~~R~~~~~~~~~~~~elg~e~~dlrk~l~el~~ 71 (136)
T PRK03100 28 GAIRWTARALRQARDYASGATSQLREELGPEFDDLRKPLGELQK 71 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
No 474
>PF00429 TLV_coat: ENV polyprotein (coat polyprotein); InterPro: IPR018154 Enveloped viruses such as Human immunodeficiency virus 1, influenza virus, and Ebola virus sp. express a surface glycoprotein that mediates both cell attachment and fusion of viral and cellular membranes. The ENV polyprotein (coat polyprotein) usually contains two coat proteins which differ depending on the source. The structure of a number of the ENV polyprotein domains have been determined: The crystal structure of an extraviral segment of the Moloney murine leukemia virus (MoMuLV) transmembrane (TM) subunit has been determined to 1.7-A resolution. This segment contains a trimeric coiled coil, with a hydrophobic cluster at its base and a strand that packs in an antiparallel orientation against the coiled coil. This structure serves as a model for a wide range of viral fusion proteins; key residues in this structure are conserved among C- and D-type retroviruses and the filovirus ebola []. An essential step in retrovirus infection is the binding of the virus to its receptor on a target cell. The structure of the receptor-binding domain of the envelope glycoprotein from Friend murine leukemia virus (F-MuLV) has been determined determined to 2.0-A resolution. The core of the domain is an antiparallel beta sandwich, with two interstrand loops forming a helical subdomain atop the sandwich. The residues in the helical region, but not in the beta sandwich, are highly variable among mammalian C-type retroviruses with distinct tropisms, indicating that the helical subdomain determines the receptor specificity of the virus []. ; PDB: 1LCS_B 1MOF_A 1XNL_A 2XZ3_A 1AOL_A 1Y4M_C.
Probab=20.25 E-value=3.4e+02 Score=24.51 Aligned_cols=96 Identities=15% Similarity=0.159 Sum_probs=0.0
Q ss_pred hhHhhhcchhHhhHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHH
Q 032617 37 EIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHSEA-------------------------SFQKDFLDQLQMTLIKA 91 (137)
Q Consensus 37 ~~q~~~~~~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev-------------------------~~Qn~lLD~l~~~~d~~ 91 (137)
+++.+++.-.++-.+.+..|.+.|..|++++..=.-.+ ....+.|..|.+.+++-
T Consensus 428 ~L~~~~~~d~~~~~~~i~~l~~~~~sl~~~v~qnr~~lD~l~a~~Gg~C~~l~~~CC~y~~~s~~v~~~i~~l~e~~~~~ 507 (561)
T PF00429_consen 428 QLSNALEEDLQALEDSISALQEQLTSLAEVVLQNRRALDLLTAEQGGLCAALKEECCFYINHSGIVRDSIKKLRERLEKR 507 (561)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTSHHHHHTS-------------HHHHHHTT---HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhhhcCCchhhhCCceEEEECCccchhHHHHHHHHHHHhh
Q ss_pred hhhhHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHH
Q 032617 92 QAGVKNNMRRLNKSIVKHGSNHIMHVVLFALFLFFILYMWS 132 (137)
Q Consensus 92 ~~~L~~t~~rl~~v~~~~~~~~~~~lil~~v~vffvly~l~ 132 (137)
.........=+...+....+...+...++..++++++.+++
T Consensus 508 ~~~~~~~~~w~~~~~~~~~w~~~ll~~~~~~l~~~ll~l~~ 548 (561)
T PF00429_consen 508 KRESNDWQGWFEGWFGWSPWLKPLLSTLLGPLLILLLLLLF 548 (561)
T ss_dssp HHHHT------------------------------------
T ss_pred hhhccccccccccccccchHHHHHHHHHHHHHHHHHHHHHH
No 475
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=20.21 E-value=3.4e+02 Score=19.69 Aligned_cols=34 Identities=9% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617 75 SFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK 108 (137)
Q Consensus 75 ~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~ 108 (137)
++|.+.|..|+.....+...+..+.++-..+++.
T Consensus 100 e~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~ 133 (144)
T PF11221_consen 100 EEQLKRIKELEEENEEAEEELQEAVKEAEELLKQ 133 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 476
>PF14899 DUF4492: Domain of unknown function (DUF4492)
Probab=20.14 E-value=1.3e+02 Score=19.47 Aligned_cols=24 Identities=17% Similarity=0.396 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHH
Q 032617 111 SNHIMHVVLFALFLFFILYMWSKM 134 (137)
Q Consensus 111 ~~~~~~lil~~v~vffvly~l~k~ 134 (137)
++..|.+|++=++++|++.-+.-+
T Consensus 18 GktLW~IIliKLfImF~vLK~FfF 41 (64)
T PF14899_consen 18 GKTLWLIILIKLFIMFAVLKLFFF 41 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC
No 477
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=20.12 E-value=1.7e+02 Score=16.00 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhc
Q 032617 113 HIMHVVLFALFLFFILYMWSKMFR 136 (137)
Q Consensus 113 ~~~~lil~~v~vffvly~l~k~~~ 136 (137)
.+-+.+..++.+.+++|+++-++|
T Consensus 2 ~~~~~l~~~va~~L~vYL~~ALlr 25 (29)
T PRK14759 2 ILDYSLAGAVSLGLLIYLTYALLR 25 (29)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhC
No 478
>PF04253 TFR_dimer: Transferrin receptor-like dimerisation domain; InterPro: IPR007365 This entry represents the dimerisation domain found in the transferrin receptor, as well as in a number of other proteins including glutamate carboxypeptidase II and N-acetylated-alpha-linked acidic dipeptidase like protein. The transferrin receptor (TfR) assists iron uptake into vertebrate cells through a cycle of endo- and exocytosis of the iron transport protein transferrin (Tf). TfR binds iron-loaded (diferric) Tf at the cell surface and carries it to the endosome, where the iron dissociates from Tf. The apo-Tf remains bound to TfR until it reaches the cell surface, where apo-Tf is replaced by diferric Tf from the serum to begin the cycle again. Human TfR is a homodimeric type II transmembrane protein. The crystal structure of a TfR monomer reveals a 3-domain structure: a protease-like domain that closely resembles carboxy- and amino-peptidases; an apical domain consisting of a beta-sandwich; and a helical dimerisation domain. The dimerisation domain consists of a 4-helical bundle that makes contact with each of the three domains in the dimer partner [].; PDB: 3FF3_A 3FEC_A 3FED_A 3FEE_A 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A ....
Probab=20.08 E-value=2.9e+02 Score=19.15 Aligned_cols=50 Identities=12% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617 53 ITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 53 Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
++.|...+..++..|....++++.=.... .+......+++...||..+-+
T Consensus 4 l~~L~~ai~~~~~aa~~f~~~~~~~~~~~-----~~~~~~~~~r~~N~~L~~~Er 53 (125)
T PF04253_consen 4 LDPLKKAISKFKKAAKEFQEWIKSWDEIV-----GIEPDPLAVRRLNDRLMQFER 53 (125)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHS-----------TT-HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----cccCCHHHHHHHHHHHHHHHH
No 479
>PF01307 Plant_vir_prot: Plant viral movement protein; InterPro: IPR001896 This family of membrane/coat proteins are found in a number of different ssRNA plant virus families that include Potexvirus, Hordeivirus and Carlavirus.
Probab=20.07 E-value=1.3e+02 Score=21.11 Aligned_cols=28 Identities=25% Similarity=0.507 Sum_probs=0.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhcC
Q 032617 110 GSNHIMHVVLFALFLFFILYMWSKMFRR 137 (137)
Q Consensus 110 ~~~~~~~lil~~v~vffvly~l~k~~~~ 137 (137)
.....+..+++++++.+++|+..|+.++
T Consensus 68 ~~~~~~~~~~~vl~L~~~I~~~~~~~~~ 95 (104)
T PF01307_consen 68 SSSSKFQPFLLVLLLILLIYLSSRFSSR 95 (104)
T ss_pred CCCccHHHHHHHHHHHHHHHHhhcccCC
No 480
>PRK11281 hypothetical protein; Provisional
Probab=20.05 E-value=4.7e+02 Score=25.87 Aligned_cols=73 Identities=16% Similarity=0.179 Sum_probs=0.0
Q ss_pred CCCCchhhHhhhcchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 032617 31 PVAGSDEIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKS 105 (137)
Q Consensus 31 ~~~~~~~~q~~~~~~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v 105 (137)
+.++.+++|.+.+.+ .+++. .+.=.+.+...=+-+.+--++++.+.+-.+++....+.+...++.+.+++.++
T Consensus 34 ~~p~~~~iq~~l~~~-~~~~~-~~~~~k~~~~~l~~tL~~L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~L 106 (1113)
T PRK11281 34 DLPTEADVQAQLDAL-NKQKL-LEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEAL 106 (1113)
T ss_pred CCCCHHHHHHHHHHh-hcCCC-CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
No 481
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=20.05 E-value=1.2e+02 Score=24.27 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q 032617 112 NHIMHVVLFALFLFFILYMWS 132 (137)
Q Consensus 112 ~~~~~lil~~v~vffvly~l~ 132 (137)
|.+.+.|+|+|+.|+++-.++
T Consensus 133 ClIIIAVLfLICT~LfLSTVV 153 (227)
T PF05399_consen 133 CLIIIAVLFLICTLLFLSTVV 153 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 482
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=20.05 E-value=3.6e+02 Score=20.20 Aligned_cols=49 Identities=8% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHH
Q 032617 74 ASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLFALFLFFI 127 (137)
Q Consensus 74 v~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~~~~~~~lil~~v~vffv 127 (137)
++.|.+.|+-.-..++......+...++=.|+.+ ..=++..++++++|+
T Consensus 123 ~e~Q~k~i~L~~e~L~~~~~~a~~~~~k~~Kmy~-----~LGvl~Gl~lvIlLi 171 (171)
T PRK08307 123 REGQQKHIRLALEHLEREEEEAEEEQKKNEKMYK-----YLGFLAGLLIVILLI 171 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHH-----HHHHHHHHHHHHHhC
No 483
>PF11189 DUF2973: Protein of unknown function (DUF2973); InterPro: IPR021355 This entry is represented by Bacteriophage Syn9, Gp224. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently they have no known function.
Probab=20.03 E-value=1.6e+02 Score=18.89 Aligned_cols=21 Identities=14% Similarity=0.453 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 032617 113 HIMHVVLFALFLFFILYMWSK 133 (137)
Q Consensus 113 ~~~~lil~~v~vffvly~l~k 133 (137)
+..|..+|++++++.+..+++
T Consensus 3 ~llY~~af~~L~~~a~~~m~~ 23 (65)
T PF11189_consen 3 PLLYILAFTILLFLAFRNMIR 23 (65)
T ss_pred hhHHHHHHHHHHHHHHHHHHh
Done!