Query 032617
Match_columns 137
No_of_seqs 114 out of 649
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 05:28:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032617.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032617hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nps_D Syntaxin-6; vesicle fus 99.8 3.5E-19 1.2E-23 119.8 8.0 76 37-113 6-81 (82)
2 1n7s_D SNAP-25A; neuronal snar 99.7 5.9E-18 2E-22 109.3 8.7 65 43-107 2-66 (66)
3 1gl2_D Syntaxin 8, vesicle tra 99.7 9.1E-18 3.1E-22 108.2 7.7 62 46-107 4-65 (65)
4 1sfc_D Protein (SNAP-25B), pro 99.7 6.1E-17 2.1E-21 110.0 8.8 66 43-108 21-86 (87)
5 1l4a_D S-SNAP25 fusion protein 99.6 7.7E-16 2.6E-20 104.7 6.8 64 44-107 23-86 (87)
6 3b5n_D Protein transport prote 99.5 2.9E-14 9.8E-19 91.9 8.3 62 43-104 2-63 (64)
7 3hd7_B Syntaxin-1A; membrane p 99.0 9.6E-09 3.3E-13 72.0 12.1 83 47-129 17-101 (109)
8 1jth_B Syntaxin 1A; coiled-coi 97.6 0.00069 2.3E-08 44.1 9.6 62 47-108 6-67 (77)
9 2nps_B Syntaxin 13, vesicle-as 97.4 0.0021 7.1E-08 41.2 9.2 62 48-109 3-64 (71)
10 3hd7_A Vesicle-associated memb 97.3 0.0044 1.5E-07 41.7 10.2 58 50-107 4-64 (91)
11 3b5n_B Protein SSO1; snare com 97.0 0.01 3.5E-07 37.7 9.8 61 47-107 6-66 (69)
12 1gl2_B Syntaxin 7; membrane pr 97.0 0.0063 2.2E-07 38.3 8.4 59 47-105 5-63 (65)
13 1sfc_B Protein (syntaxin 1A), 97.0 0.012 4.2E-07 38.6 9.9 62 47-108 17-78 (83)
14 1n7s_B Syntaxin 1A; neuronal s 96.9 0.014 4.9E-07 36.8 9.2 60 47-106 8-67 (68)
15 2kog_A Vesicle-associated memb 95.2 0.003 1E-07 44.6 -0.3 54 53-107 35-92 (119)
16 2kog_A Vesicle-associated memb 94.3 0.0084 2.9E-07 42.3 0.2 50 48-98 41-90 (119)
17 1n7s_C SNAP-25A; neuronal snar 94.1 0.7 2.4E-05 30.0 10.2 61 47-107 16-79 (79)
18 3hd7_B Syntaxin-1A; membrane p 93.4 1.2 4.2E-05 30.3 11.7 72 36-108 14-85 (109)
19 1dn1_B Syntaxin 1A, syntaxin b 89.4 0.081 2.8E-06 41.5 0.4 62 47-108 196-257 (267)
20 1gl2_C VTI1B, vesicle transpor 89.1 2.7 9.2E-05 26.0 8.2 59 48-106 6-64 (65)
21 3hd7_A Vesicle-associated memb 88.9 3.5 0.00012 27.1 11.0 50 48-98 13-62 (91)
22 1nhl_A Synaptosomal-associated 88.9 1.8 6.1E-05 25.9 6.2 44 61-104 10-53 (54)
23 3efg_A Protein SLYX homolog; x 88.2 2.5 8.6E-05 27.3 7.0 53 47-99 10-62 (78)
24 2nps_C Vesicle transport throu 87.4 4.2 0.00014 26.2 10.4 61 48-108 16-76 (81)
25 3c98_B Syntaxin-1A; protein co 86.9 0.12 4E-06 39.1 -0.1 62 47-108 208-269 (279)
26 1l4a_C S-SNAP25 fusion protein 83.5 3 0.0001 27.3 5.6 56 48-103 21-79 (83)
27 1ic2_A Tropomyosin alpha chain 78.6 10 0.00036 24.1 10.4 71 39-109 5-78 (81)
28 2xhe_B Syntaxin1; exocytosis, 77.5 0.39 1.3E-05 37.5 -0.5 62 47-108 213-274 (279)
29 1ezj_A Nucleocapsid phosphopro 75.1 8.2 0.00028 26.3 5.7 36 47-82 69-104 (115)
30 3a7p_A Autophagy protein 16; c 75.0 21 0.00073 25.9 9.6 60 49-108 66-125 (152)
31 3u1c_A Tropomyosin alpha-1 cha 74.5 16 0.00056 24.3 8.7 58 50-107 22-79 (101)
32 3oja_A Leucine-rich immune mol 73.1 37 0.0013 27.7 10.5 58 50-107 427-484 (487)
33 4i0x_B ESAT-6-like protein MAB 72.4 17 0.00058 23.6 9.2 58 50-107 10-77 (103)
34 3zrx_A AF1503 protein, osmolar 68.5 18 0.0006 22.2 7.0 59 49-107 46-108 (115)
35 3u59_A Tropomyosin beta chain; 66.3 25 0.00087 23.2 8.7 58 50-107 22-79 (101)
36 2v71_A Nuclear distribution pr 64.8 41 0.0014 25.1 10.5 65 37-101 35-99 (189)
37 1jcd_A Major outer membrane li 62.8 22 0.00074 21.2 5.6 13 90-102 36-48 (52)
38 2pjw_V Vacuolar protein sortin 62.8 30 0.001 22.8 7.9 40 49-89 31-71 (91)
39 3b5n_C Protein transport prote 62.6 26 0.00088 22.0 9.3 55 52-106 10-67 (70)
40 2rdd_B UPF0092 membrane protei 60.1 5.6 0.00019 21.8 2.0 10 122-131 10-19 (37)
41 4ev6_A Magnesium transport pro 59.9 61 0.0021 25.4 12.3 15 91-105 271-285 (339)
42 3na7_A HP0958; flagellar bioge 59.4 53 0.0018 24.9 8.3 55 50-104 31-85 (256)
43 1jcd_A Major outer membrane li 58.9 26 0.00089 20.8 7.4 34 50-83 17-50 (52)
44 3mxz_A Tubulin-specific chaper 57.6 42 0.0015 23.0 6.7 56 52-108 30-85 (116)
45 2knc_A Integrin alpha-IIB; tra 57.5 14 0.00049 22.2 3.7 14 124-137 26-41 (54)
46 2w1k_A Putative sortase; pilus 57.4 2.2 7.5E-05 33.3 0.0 24 113-136 224-247 (252)
47 2l8s_A Integrin alpha-1; trans 56.3 15 0.00052 22.1 3.7 14 124-137 23-38 (54)
48 2iub_A CORA, divalent cation t 56.0 74 0.0025 25.2 10.0 16 90-105 294-309 (363)
49 2kwh_A RAla-binding protein 1; 55.9 7.7 0.00026 23.6 2.3 22 68-89 6-27 (56)
50 1sfc_A VAMP 2, protein (synapt 53.2 45 0.0015 21.9 8.0 52 51-103 30-85 (96)
51 1qsd_A Protein (beta-tubulin b 51.7 52 0.0018 22.1 6.6 55 52-107 26-81 (106)
52 3fav_B ESAT-6, 6 kDa early sec 51.1 42 0.0014 20.9 7.5 54 54-107 8-69 (94)
53 1m1j_B Fibrinogen beta chain; 49.6 1.2E+02 0.004 25.6 10.2 28 48-75 104-131 (464)
54 1gmj_A ATPase inhibitor; coile 48.9 53 0.0018 21.4 5.8 28 70-97 49-76 (84)
55 3gwk_C SAG1039, putative uncha 48.8 47 0.0016 20.8 8.9 54 54-107 11-72 (98)
56 1h7c_A Tubulin-specific chaper 48.8 42 0.0015 22.6 5.5 57 51-108 28-84 (108)
57 2k1a_A Integrin alpha-IIB; sin 47.9 25 0.00085 20.0 3.5 14 124-137 24-39 (42)
58 2bez_C E2 glycoprotein; coiled 47.7 53 0.0018 21.1 8.9 69 37-105 2-74 (77)
59 4aj5_A SKA1, spindle and kinet 46.0 62 0.0021 21.4 5.8 46 62-108 34-79 (91)
60 2ks1_B Epidermal growth factor 45.4 19 0.00064 20.7 2.7 10 124-133 27-36 (44)
61 2l2t_A Receptor tyrosine-prote 45.3 20 0.00068 20.6 2.8 9 125-133 27-35 (44)
62 3p8c_F ABL interactor 2; actin 43.8 90 0.0031 22.6 8.3 47 53-99 56-102 (159)
63 3ra3_A P1C; coiled coil domain 43.1 20 0.00069 18.3 2.3 11 55-65 11-21 (28)
64 4i0x_A ESAT-6-like protein MAB 42.2 63 0.0022 20.4 7.8 53 55-107 4-64 (94)
65 3j1r_A Archaeal adhesion filam 42.1 34 0.0012 17.5 3.1 17 116-132 9-25 (26)
66 3g67_A Methyl-accepting chemot 40.4 1.1E+02 0.0039 22.8 10.4 49 50-98 24-72 (213)
67 2knc_B Integrin beta-3; transm 39.8 33 0.0011 21.9 3.6 16 119-134 19-34 (79)
68 3qbr_A SJA, sjchgc06286 protei 39.6 1.1E+02 0.0038 22.5 8.2 65 59-129 61-135 (179)
69 1a93_B MAX protein, coiled coi 39.3 19 0.00064 19.7 2.0 14 69-83 15-28 (34)
70 3efg_A Protein SLYX homolog; x 39.2 72 0.0025 20.2 6.4 39 70-108 19-57 (78)
71 1s0p_A CAP, adenylyl cyclase-a 38.8 94 0.0032 22.8 6.4 29 55-83 8-36 (176)
72 3h6p_C ESAT-6-like protein ESX 38.5 44 0.0015 21.0 4.1 55 53-107 8-70 (96)
73 3oja_B Anopheles plasmodium-re 38.0 1.7E+02 0.0058 24.1 10.4 26 82-107 554-579 (597)
74 1l4a_A Synaptobrevin; snare, s 38.0 33 0.0011 21.7 3.4 17 86-102 53-69 (80)
75 2vs0_A Virulence factor ESXA; 37.8 70 0.0024 19.6 8.9 53 55-107 10-70 (97)
76 3oja_B Anopheles plasmodium-re 37.3 1.7E+02 0.006 24.1 10.4 31 76-106 534-564 (597)
77 3mk7_C Cytochrome C oxidase, C 37.3 25 0.00086 27.4 3.2 20 113-132 56-75 (311)
78 2fyz_B Fusion protein, fusion 37.0 17 0.00059 21.3 1.7 32 68-99 10-41 (48)
79 3kpe_B Fusion glycoprotein F0; 36.8 34 0.0012 19.1 2.8 31 47-84 5-35 (39)
80 3ghg_B Fibrinogen beta chain; 35.7 1.4E+02 0.0047 25.3 7.6 26 47-72 98-123 (461)
81 2ieq_A S glycoprotein, spike g 35.6 49 0.0017 22.6 4.0 33 49-81 74-106 (109)
82 3kqg_A Langerin, C-type lectin 35.6 79 0.0027 21.8 5.4 30 52-81 17-46 (182)
83 3okq_A BUD site selection prot 35.3 1.2E+02 0.0041 21.6 7.6 51 47-97 64-125 (141)
84 3fav_A ESAT-6-like protein ESX 35.0 85 0.0029 19.8 6.4 27 72-98 61-87 (101)
85 2kxh_B Peptide of FAR upstream 34.9 12 0.00039 20.1 0.6 20 54-73 8-27 (31)
86 1oxj_A RNA-binding protein sma 34.4 39 0.0013 25.0 3.6 60 48-108 37-96 (173)
87 2pjw_H Uncharacterized protein 34.1 97 0.0033 20.2 6.6 44 47-91 31-75 (88)
88 3din_D Preprotein translocase 34.1 65 0.0022 19.5 4.2 19 90-108 3-21 (65)
89 1deb_A APC protein, adenomatou 32.9 79 0.0027 18.7 6.5 41 53-93 5-45 (54)
90 3cx5_D Cytochrome C1, heme pro 32.8 34 0.0012 26.6 3.2 18 116-133 211-228 (248)
91 2yiu_B Cytochrome C1, heme pro 32.6 34 0.0012 26.9 3.2 18 116-133 233-250 (263)
92 2qyw_A Vesicle transport throu 31.4 1.1E+02 0.0038 20.0 7.4 57 43-99 18-83 (102)
93 1deq_A Fibrinogen (alpha chain 31.3 2.2E+02 0.0076 23.5 8.1 36 37-72 53-88 (390)
94 1pp9_D Cytochrome C-1, cytochr 30.9 38 0.0013 26.2 3.2 18 116-133 207-224 (241)
95 1zrt_D Cytochrome C1; cytochro 30.7 38 0.0013 26.5 3.2 18 116-133 230-247 (258)
96 1gd2_E Transcription factor PA 30.0 1E+02 0.0035 19.2 6.0 40 47-86 25-64 (70)
97 1ic2_A Tropomyosin alpha chain 30.0 1E+02 0.0035 19.2 7.4 52 54-105 2-53 (81)
98 2qjy_B Cytochrome C1; cytochro 29.4 41 0.0014 26.5 3.2 18 116-133 232-249 (269)
99 2ifo_A Inovirus; helical virus 29.2 40 0.0014 19.5 2.4 19 118-136 25-43 (46)
100 1nig_A Hypothetical protein TA 28.8 1.2E+02 0.0041 21.5 5.2 63 72-134 45-117 (152)
101 1rh5_B Preprotein translocase 28.7 96 0.0033 19.6 4.4 23 86-108 3-25 (74)
102 1vcs_A Vesicle transport throu 28.5 1.3E+02 0.0043 19.7 5.4 51 45-95 10-68 (102)
103 3zx6_A HAMP, methyl-accepting 27.8 2.2E+02 0.0074 22.2 9.9 51 50-100 58-108 (341)
104 1qu7_A Methyl-accepting chemot 27.7 1.9E+02 0.0064 21.4 7.5 60 48-107 144-203 (227)
105 3he5_B Synzip2; heterodimeric 27.6 92 0.0032 17.9 6.5 39 55-93 7-45 (52)
106 3ghg_A Fibrinogen alpha chain; 27.5 3E+02 0.01 23.8 8.9 37 37-73 50-86 (562)
107 3s8f_C Cytochrome C oxidase po 26.4 78 0.0027 17.1 3.1 10 112-121 6-15 (34)
108 3ghg_A Fibrinogen alpha chain; 25.6 3.3E+02 0.011 23.6 8.8 41 62-102 114-154 (562)
109 1wyy_A E2 glycoprotein; membra 25.5 1.9E+02 0.0064 20.7 9.6 76 33-108 11-90 (149)
110 3zcc_A HAMP, osmolarity sensor 25.2 1.2E+02 0.004 18.2 8.1 26 50-75 47-72 (114)
111 2gsm_B Cytochrome C oxidase su 24.9 55 0.0019 25.3 3.2 13 123-135 47-59 (262)
112 2nps_D Syntaxin-6; vesicle fus 24.9 1.3E+02 0.0045 18.7 6.3 61 48-108 9-69 (82)
113 3zx6_A HAMP, methyl-accepting 24.8 2.5E+02 0.0084 21.9 10.4 43 51-93 45-87 (341)
114 2pnv_A Small conductance calci 24.8 83 0.0029 17.8 3.2 16 49-64 21-36 (43)
115 1s94_A S-syntaxin; three helix 24.1 1.9E+02 0.0065 20.3 6.9 61 47-107 46-109 (180)
116 3fym_A Putative uncharacterize 24.1 16 0.00056 24.8 0.0 15 118-132 112-126 (130)
117 3etw_A Adhesin A; antiparallel 24.0 1.8E+02 0.006 20.0 5.4 6 72-77 89-94 (119)
118 3arc_I Photosystem II reaction 23.7 1E+02 0.0035 17.1 3.6 16 117-132 6-21 (38)
119 1lwu_C Fibrinogen gamma chain; 22.4 2.8E+02 0.0095 22.1 7.0 20 70-89 31-50 (323)
120 3zrx_A AF1503 protein, osmolar 21.8 1.4E+02 0.0047 17.8 7.2 27 70-96 53-79 (115)
121 2xz3_A Maltose ABC transporter 21.6 3.1E+02 0.011 21.9 10.6 67 50-116 359-430 (463)
122 1ez3_A Syntaxin-1A; three heli 21.5 1.8E+02 0.0061 19.0 7.3 58 47-104 15-75 (127)
123 2k9j_B Integrin beta-3; transm 21.1 1.2E+02 0.0041 16.9 3.6 13 122-134 21-33 (43)
124 3ogi_B ESXO, putative ESAT-6-l 21.1 1.9E+02 0.0066 19.3 5.7 53 55-107 12-73 (99)
125 1yvi_A Histidine-containing ph 21.0 2.1E+02 0.0071 19.6 7.1 20 52-71 71-90 (149)
126 1r2d_A Apoptosis regulator BCL 20.8 1.8E+02 0.0063 21.9 5.4 22 69-90 92-114 (218)
127 4ioe_A Secreted protein ESXB; 20.7 1.5E+02 0.0052 17.9 8.4 20 56-75 14-33 (93)
128 1ykh_B RNA polymerase II holoe 20.6 2.1E+02 0.0073 19.6 5.3 59 50-108 56-121 (132)
129 3g67_A Methyl-accepting chemot 20.0 2.7E+02 0.0093 20.6 10.5 55 53-107 20-74 (213)
No 1
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=99.79 E-value=3.5e-19 Score=119.84 Aligned_cols=76 Identities=18% Similarity=0.194 Sum_probs=61.0
Q ss_pred hhHhhhcchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCch
Q 032617 37 EIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNH 113 (137)
Q Consensus 37 ~~q~~~~~~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~~~~ 113 (137)
.+|.+.+.+ .|||+.||.|+++|++||++|.+||+||++||++||+|+++||++..+|+++++|++++++++++++
T Consensus 6 ~~q~Q~~~~-~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~~~~~ 81 (82)
T 2nps_D 6 SMTGGNNMG-RMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTSDRR 81 (82)
T ss_dssp -------------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCC
Confidence 345555554 7899999999999999999999999999999999999999999999999999999999999876543
No 2
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=99.75 E-value=5.9e-18 Score=109.33 Aligned_cols=65 Identities=14% Similarity=0.258 Sum_probs=61.9
Q ss_pred cchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617 43 DPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 43 ~~~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
+.+|.|||+.|+.|+++|++||++|.+||+||+.||++||++++.||++..+|+++++|++++++
T Consensus 2 d~~e~eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~ll~ 66 (66)
T 1n7s_D 2 SARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLG 66 (66)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHcC
Confidence 35689999999999999999999999999999999999999999999999999999999998763
No 3
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.73 E-value=9.1e-18 Score=108.15 Aligned_cols=62 Identities=19% Similarity=0.278 Sum_probs=53.8
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617 46 NADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 46 ~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
..|||+.||.|+++|++||++|.+||+||+.||++||+++++||++..+|+++++|++++.+
T Consensus 4 ~~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~l~k 65 (65)
T 1gl2_D 4 MQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLVDR 65 (65)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 37999999999999999999999999999999999999999999999999999999998864
No 4
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.70 E-value=6.1e-17 Score=109.99 Aligned_cols=66 Identities=15% Similarity=0.276 Sum_probs=62.3
Q ss_pred cchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617 43 DPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK 108 (137)
Q Consensus 43 ~~~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~ 108 (137)
+.++.|||+.||.|++.|++||++|.+||+||+.||++||+|++.+|++..+|+.+++|+++++++
T Consensus 21 d~~e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ll~k 86 (87)
T 1sfc_D 21 DARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLGS 86 (87)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 445689999999999999999999999999999999999999999999999999999999999875
No 5
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=99.62 E-value=7.7e-16 Score=104.67 Aligned_cols=64 Identities=17% Similarity=0.309 Sum_probs=60.7
Q ss_pred chhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617 44 PVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 44 ~~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
.++.|||+.||.|++.|++||++|.+||+||+.||++||++++.+|++..+|+.+++|++++++
T Consensus 23 ~~e~eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kll~ 86 (87)
T 1l4a_D 23 AREDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKLLK 86 (87)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHCC-
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3468999999999999999999999999999999999999999999999999999999999876
No 6
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=99.54 E-value=2.9e-14 Score=91.85 Aligned_cols=62 Identities=15% Similarity=0.240 Sum_probs=59.5
Q ss_pred cchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 032617 43 DPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNK 104 (137)
Q Consensus 43 ~~~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~ 104 (137)
+.+|.|+|+-|+.|++.|++||++|.+||+||+.||++||.++...|++..++..+.+||++
T Consensus 2 d~~E~e~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~ 63 (64)
T 3b5n_D 2 SEMELEIDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAG 63 (64)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45689999999999999999999999999999999999999999999999999999999986
No 7
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=98.99 E-value=9.6e-09 Score=71.97 Aligned_cols=83 Identities=13% Similarity=0.251 Sum_probs=67.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh--cCCchhHHHHHHHHHH
Q 032617 47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK--HGSNHIMHVVLFALFL 124 (137)
Q Consensus 47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~--~~~~~~~~lil~~v~v 124 (137)
++-++.+..|.+++..|.++-.++...|.+|.+++|.++++++.+...+..+.+.+++..+. +..++.|+++++++++
T Consensus 17 ~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~i~l~~~~i~ 96 (109)
T 3hd7_B 17 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIMIIICCVIL 96 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceehHHHHHHH
Confidence 57788999999999999999999999999999999999999999999999999999988653 3334445444444444
Q ss_pred HHHHH
Q 032617 125 FFILY 129 (137)
Q Consensus 125 ffvly 129 (137)
++++.
T Consensus 97 ~~i~~ 101 (109)
T 3hd7_B 97 GIIIA 101 (109)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33333
No 8
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=97.64 E-value=0.00069 Score=44.10 Aligned_cols=62 Identities=15% Similarity=0.245 Sum_probs=58.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617 47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK 108 (137)
Q Consensus 47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~ 108 (137)
.+-.+.+..|.+++.-|.++-.++..-|.+|..+||.++..++.+...+..+...+.+..+.
T Consensus 6 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~ 67 (77)
T 1jth_B 6 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY 67 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999884
No 9
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=97.38 E-value=0.0021 Score=41.18 Aligned_cols=62 Identities=11% Similarity=0.221 Sum_probs=57.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhc
Q 032617 48 DLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKH 109 (137)
Q Consensus 48 eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~ 109 (137)
+-++.+..|.+++.-|.++-.++..=|.+|..+||.++..++.+...+..+...|.+..+..
T Consensus 3 eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~q 64 (71)
T 2nps_B 3 MRETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQ 64 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44678899999999999999999999999999999999999999999999999999888743
No 10
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=97.27 E-value=0.0044 Score=41.66 Aligned_cols=58 Identities=10% Similarity=0.133 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--HHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617 50 DDEITGLRSQVKQLRN-VAQEIHSEASFQK--DFLDQLQMTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 50 D~~Ld~L~~~V~~LK~-va~~I~~Ev~~Qn--~lLD~l~~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
++.+..+...|...|. +..+|..-++... +.|++-.+++.......+++.+++++-+.
T Consensus 4 ~d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmw 64 (91)
T 3hd7_A 4 MRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYW 64 (91)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666776766 4555655454333 24555556666666677777777766554
No 11
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=97.04 E-value=0.01 Score=37.66 Aligned_cols=61 Identities=15% Similarity=0.226 Sum_probs=56.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617 47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
.+-++.+..|.+++.-|.++-.++..=|.+|..+||.++..++.+...+..+.+.+.+..+
T Consensus 6 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~ 66 (69)
T 3b5n_B 6 QARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVK 66 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557789999999999999999999999999999999999999999999999999988766
No 12
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=97.00 E-value=0.0063 Score=38.28 Aligned_cols=59 Identities=14% Similarity=0.297 Sum_probs=54.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 032617 47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKS 105 (137)
Q Consensus 47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v 105 (137)
.+-++.+..|.+++.-|.++-.++..=|.+|..+||.++..++.+...+..+.+.|.+.
T Consensus 5 ~eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA 63 (65)
T 1gl2_B 5 HERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRA 63 (65)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567789999999999999999999999999999999999999999999999988764
No 13
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=96.97 E-value=0.012 Score=38.61 Aligned_cols=62 Identities=15% Similarity=0.245 Sum_probs=58.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617 47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK 108 (137)
Q Consensus 47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~ 108 (137)
.+-.+.+..|.+++.-|.++-.++..=|.+|..+||.++..++.+...+..+.+.+.+..+.
T Consensus 17 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~ 78 (83)
T 1sfc_B 17 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678899999999999999999999999999999999999999999999999999998874
No 14
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=96.85 E-value=0.014 Score=36.84 Aligned_cols=60 Identities=15% Similarity=0.274 Sum_probs=55.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 032617 47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSI 106 (137)
Q Consensus 47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~ 106 (137)
.+-++.+..|.+++.-|.++-.++..=|.+|..+||.++..++.+...+..+.+.+.+..
T Consensus 8 ~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 67 (68)
T 1n7s_B 8 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456778999999999999999999999999999999999999999999999999988753
No 15
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=95.18 E-value=0.003 Score=44.58 Aligned_cols=54 Identities=11% Similarity=0.182 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhHHHHHHHHHHHh
Q 032617 53 ITGLRSQVKQLRN-VAQEIHSEASFQKDFLDQLQ---MTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 53 Ld~L~~~V~~LK~-va~~I~~Ev~~Qn~lLD~l~---~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
+..+...|...|. +..+|..=+ +-.+-||+|. +++.......++..+++++-+.
T Consensus 35 l~~vq~evdeVk~IM~~NIdkvL-eRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkmw 92 (119)
T 2kog_A 35 LQQTQAQVDEVVDIMRVNVDKVL-ERDQKLSELDDRADALQAGASQFETSAAKLKRKYW 92 (119)
T ss_dssp HHHSSHHHHHHHHHHHHHHHHHH-CCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444 233444323 2333334333 3444444555555556554443
No 16
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=94.28 E-value=0.0084 Score=42.26 Aligned_cols=50 Identities=18% Similarity=0.218 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 032617 48 DLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNN 98 (137)
Q Consensus 48 eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t 98 (137)
|-|+--+.+.+.+..+-+=+..|. ++.+.-+-|.+-...|.+...+|++.
T Consensus 41 evdeVk~IM~~NIdkvLeRGEkLd-~L~~KTe~L~~~S~~F~k~A~kl~rk 90 (119)
T 2kog_A 41 QVDEVVDIMRVNVDKVLERDQKLS-ELDDRADALQAGASQFETSAAKLKRK 90 (119)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCSSC-CCCSCCSCCCSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444443333332222 23333333444455555555555544
No 17
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=94.14 E-value=0.7 Score=29.96 Aligned_cols=61 Identities=11% Similarity=0.096 Sum_probs=49.1
Q ss_pred HhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617 47 ADLDDEITGLRSQVKQ---LRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 47 ~eqD~~Ld~L~~~V~~---LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
.-.|+.++.+...++. -+.++..+-.++..|.+-|+..+..++....-|+.+-+.|+.|.|
T Consensus 16 ~~~~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~m~k 79 (79)
T 1n7s_C 16 QLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDLGK 79 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhhhcC
Confidence 4456666666655554 445888899999999999999999999999999999998887753
No 18
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=93.38 E-value=1.2 Score=30.27 Aligned_cols=72 Identities=14% Similarity=0.135 Sum_probs=56.4
Q ss_pred hhhHhhhcchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617 36 DEIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK 108 (137)
Q Consensus 36 ~~~q~~~~~~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~ 108 (137)
.++|.+.+.+ .+-++.+.+|++-...+-.+-.+=|+-++.=..-.++..+.++.+...|+.+.+.=++--++
T Consensus 14 ~~i~eR~~eI-~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk 85 (109)
T 3hd7_B 14 SEIETRHSEI-IKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRK 85 (109)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 5777777766 67788888888888887777777777777777778889999999999999997766655554
No 19
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=89.41 E-value=0.081 Score=41.51 Aligned_cols=62 Identities=15% Similarity=0.245 Sum_probs=50.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617 47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK 108 (137)
Q Consensus 47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~ 108 (137)
.+-.+.+..|.+++.-|.++-.++..=|.+|..+||.++..++.+...+..+...|.+..+-
T Consensus 196 ~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~kA~~~ 257 (267)
T 1dn1_B 196 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY 257 (267)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677899999999999999999999999999999999999999999999999999887774
No 20
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=89.13 E-value=2.7 Score=26.00 Aligned_cols=59 Identities=15% Similarity=0.201 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 032617 48 DLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSI 106 (137)
Q Consensus 48 eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~ 106 (137)
+-.+.|..-...+.--..++..|-.++..|-+-|....+.++.++..|.++.+-|+.|.
T Consensus 6 ~t~~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~~m~ 64 (65)
T 1gl2_C 6 RATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMS 64 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHHhhc
Confidence 34556666666677778899999999999999999999999999999999998877654
No 21
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=88.94 E-value=3.5 Score=27.12 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 032617 48 DLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNN 98 (137)
Q Consensus 48 eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t 98 (137)
|-|+--+.+.+.+..+-+=+..+.+ +.+.-+-|..-...|.+...+|++.
T Consensus 13 ev~evk~iM~~NI~kvL~RgekL~~-L~~kt~~L~~~s~~F~~~A~~l~rk 62 (91)
T 3hd7_A 13 QVDEVVDIMRVNVDKVLERDQKLSE-LDDRADALQAGASQFETSAAKLKRK 62 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccchHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444332 4444444455555566666655554
No 22
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=88.93 E-value=1.8 Score=25.87 Aligned_cols=44 Identities=11% Similarity=0.165 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 032617 61 KQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNK 104 (137)
Q Consensus 61 ~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~ 104 (137)
.....++..+-.++..|.+-|+.++..++....-|+.+-+.|..
T Consensus 10 ~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~~ 53 (54)
T 1nhl_A 10 IESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLTE 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHhc
Confidence 34566788888999999999999999999999999998877653
No 23
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=88.22 E-value=2.5 Score=27.29 Aligned_cols=53 Identities=6% Similarity=0.007 Sum_probs=42.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 032617 47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNM 99 (137)
Q Consensus 47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~ 99 (137)
.+-+++++.|..++.-+-..-..+++.|-.|...||.|...+.....+++...
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45678999999999999888889999999999999999888888877776543
No 24
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=87.44 E-value=4.2 Score=26.22 Aligned_cols=61 Identities=11% Similarity=0.156 Sum_probs=50.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617 48 DLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK 108 (137)
Q Consensus 48 eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~ 108 (137)
+..+.|..-...+.---.++..|-.|+..|-+-|....+.++.++.-|..+.+-|+.|.+.
T Consensus 16 rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr 76 (81)
T 2nps_C 16 RSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRR 76 (81)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Confidence 3344555555555566679999999999999999999999999999999999999998875
No 25
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=86.88 E-value=0.12 Score=39.09 Aligned_cols=62 Identities=15% Similarity=0.245 Sum_probs=49.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617 47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK 108 (137)
Q Consensus 47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~ 108 (137)
.+-.+.+..|...|..+..+..+|..-+.+|...+|+++..++.+...+..+...+.+..+.
T Consensus 208 ~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~~A~~~ 269 (279)
T 3c98_B 208 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY 269 (279)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677899999999999999999999999999999999999999998888888877776664
No 26
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=83.55 E-value=3 Score=27.28 Aligned_cols=56 Identities=16% Similarity=0.172 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 032617 48 DLDDEITGLRSQVKQLRN---VAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLN 103 (137)
Q Consensus 48 eqD~~Ld~L~~~V~~LK~---va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~ 103 (137)
-.|+.++.-...++-... ++..--.++..|.+-|+.++..+|....-|+.+-+.|.
T Consensus 21 ~~~esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L~ 79 (83)
T 1l4a_C 21 VTDDSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNLE 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCTT
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355556665555544433 66677778999999999999999999888887766554
No 27
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=78.56 E-value=10 Score=24.12 Aligned_cols=71 Identities=13% Similarity=0.132 Sum_probs=54.1
Q ss_pred HhhhcchhHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhc
Q 032617 39 QLRIDPVNADLDD---EITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKH 109 (137)
Q Consensus 39 q~~~~~~~~eqD~---~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~ 109 (137)
+-.++.+..+-|. .++.+...+.....-.....+||..-++-+-.+++++|++..+|..+..++...-+..
T Consensus 5 kkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek~~ 78 (81)
T 1ic2_A 5 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKKA 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444 4555566666666678889999999999999999999999999999999998776643
No 28
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=77.47 E-value=0.39 Score=37.53 Aligned_cols=62 Identities=13% Similarity=0.251 Sum_probs=46.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617 47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK 108 (137)
Q Consensus 47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~ 108 (137)
.+=++.+..|.++|.-|.++-.++..=|.+|..+||.++..++.+...+..+.+.|.+..+.
T Consensus 213 ~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA~~~ 274 (279)
T 2xhe_B 213 RDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQARHY 274 (279)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577899999999999999999999999999999999999999999999999999887763
No 29
>1ezj_A Nucleocapsid phosphoprotein; four stranded coiled coil, viral polymerase, T viral protein, transferase; 1.90A {Sendai virus} SCOP: h.1.14.1
Probab=75.15 E-value=8.2 Score=26.34 Aligned_cols=36 Identities=11% Similarity=0.209 Sum_probs=24.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032617 47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLD 82 (137)
Q Consensus 47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD 82 (137)
+|||..|..+.+.+..+|.+-...-+--++||.++-
T Consensus 69 ~en~~~L~QIQ~ei~s~rd~hkR~~E~QkEQ~SL~~ 104 (115)
T 1ezj_A 69 DENKQLLKQIQESVESFRDIYKRFSEYQKEQNSLLM 104 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 467777777777777777666666666667776653
No 30
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=75.03 E-value=21 Score=25.86 Aligned_cols=60 Identities=12% Similarity=0.153 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617 49 LDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK 108 (137)
Q Consensus 49 qD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~ 108 (137)
+.+.+..|.+-+..++.=-.+...|+++.++.++.+.+.+....-.+.-.-.++.++-+.
T Consensus 66 ~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~E 125 (152)
T 3a7p_A 66 LLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKE 125 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888888889999988889999999999999999999999999999888888888774
No 31
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=74.50 E-value=16 Score=24.28 Aligned_cols=58 Identities=7% Similarity=-0.033 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617 50 DDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 50 D~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
-+..+.+...+.....-.....+||..-++-+-.+++++|.+...|..+..++..--+
T Consensus 22 ~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek 79 (101)
T 3u1c_A 22 LDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEE 79 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888888999999999999999999999999999999999988876654
No 32
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=73.10 E-value=37 Score=27.73 Aligned_cols=58 Identities=10% Similarity=0.075 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617 50 DDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 50 D~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
+...+.+..-....+.-...+.+|-....+++++++.....+...++.+..+=..+..
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (487)
T 3oja_A 427 QSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNLAS 484 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHHHH
Confidence 3333333333333344444444555566667777777777777777777766555443
No 33
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=72.38 E-value=17 Score=23.59 Aligned_cols=58 Identities=9% Similarity=0.096 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHhhhhHHHHHHHHHHHh
Q 032617 50 DDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMT----------LIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 50 D~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~----------~d~~~~~L~~t~~rl~~v~~ 107 (137)
.-..+.|...+..++..+..|.+++++=...++.|... |.....+.+...++|...+.
T Consensus 10 ~v~~~~l~~~a~~~~~~~~~i~~~l~~L~~~v~~L~~~g~W~G~A~~ay~~~~~~W~~~a~~l~~~L~ 77 (103)
T 4i0x_B 10 SFDLDHIEQVTSRARGFKEFVTENLDQLESRAQKLVQSGQWAGAAAAAYSQAHKEWMDAARELVEGLS 77 (103)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeechHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777778888888888888888777777777666 66666666666666666655
No 34
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=68.55 E-value=18 Score=22.21 Aligned_cols=59 Identities=7% Similarity=0.094 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617 49 LDDEITGLRSQVKQ----LRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 49 qD~~Ld~L~~~V~~----LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
-+...+.|...+.. +..+++++..-+..=...++.+..........+..+..++..+..
T Consensus 46 ~n~m~~~l~~~~~~~~~~~~~~shel~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 108 (115)
T 3zrx_A 46 IERLRRSLKQLADDRTLLMAGVSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEECNAIIE 108 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555 444444444444433334444433334444445555555554444
No 35
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=66.25 E-value=25 Score=23.16 Aligned_cols=58 Identities=16% Similarity=0.121 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617 50 DDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 50 D~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
-+..+.+...+.....-+....+|+..-++-+-.+.+++|.+...|..+..++..--+
T Consensus 22 ~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek 79 (101)
T 3u59_A 22 IDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEK 79 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677778888888888999999998888999999999999999988888765544
No 36
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=64.80 E-value=41 Score=25.09 Aligned_cols=65 Identities=15% Similarity=0.217 Sum_probs=46.2
Q ss_pred hhHhhhcchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 032617 37 EIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRR 101 (137)
Q Consensus 37 ~~q~~~~~~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~r 101 (137)
++|..=..+|.+-+..|+.+.+..+.|+.-...+..|++.-..=++.......++.+.|..-...
T Consensus 35 EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~ 99 (189)
T 2v71_A 35 EFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQ 99 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444466788999999999999999999888899888876665566555555555544444333
No 37
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=62.81 E-value=22 Score=21.18 Aligned_cols=13 Identities=15% Similarity=0.151 Sum_probs=5.2
Q ss_pred HHhhhhHHHHHHH
Q 032617 90 KAQAGVKNNMRRL 102 (137)
Q Consensus 90 ~~~~~L~~t~~rl 102 (137)
.+...-.++..||
T Consensus 36 ~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 36 AAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 3333333444443
No 38
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=62.80 E-value=30 Score=22.83 Aligned_cols=40 Identities=10% Similarity=0.198 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 032617 49 LDDEITGLRSQVKQLRN-VAQEIHSEASFQKDFLDQLQMTLI 89 (137)
Q Consensus 49 qD~~Ld~L~~~V~~LK~-va~~I~~Ev~~Qn~lLD~l~~~~d 89 (137)
.|..|.+|..+|..+|- ++..|++.++.++.++ +|++.+.
T Consensus 31 ~d~~LqeLy~kv~~lRPKL~r~l~~~~~K~~~L~-~mn~Kls 71 (91)
T 2pjw_V 31 EDSKLQNLAQRVFASKARLNYALNDKAQKYNTLI-EMNGKIS 71 (91)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred CCHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 57899999999999997 9999999999998554 4444443
No 39
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=62.60 E-value=26 Score=21.96 Aligned_cols=55 Identities=11% Similarity=0.088 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 032617 52 EITGLRSQVKQLR---NVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSI 106 (137)
Q Consensus 52 ~Ld~L~~~V~~LK---~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~ 106 (137)
.++.-...+.-.. .++..--.++..|.+-|+.++..+|....-++.+-++++.+-
T Consensus 10 sl~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk 67 (70)
T 3b5n_C 10 SVASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELK 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444443333 366666678999999999999999999999999999988764
No 40
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=60.11 E-value=5.6 Score=21.85 Aligned_cols=10 Identities=20% Similarity=0.504 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 032617 122 LFLFFILYMW 131 (137)
Q Consensus 122 v~vffvly~l 131 (137)
+++|.++|++
T Consensus 10 v~~~~ifYFl 19 (37)
T 2rdd_B 10 VVFGLIFYFM 19 (37)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444544
No 41
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=59.94 E-value=61 Score=25.41 Aligned_cols=15 Identities=13% Similarity=0.131 Sum_probs=9.3
Q ss_pred HhhhhHHHHHHHHHH
Q 032617 91 AQAGVKNNMRRLNKS 105 (137)
Q Consensus 91 ~~~~L~~t~~rl~~v 105 (137)
..++++++|+.+.-+
T Consensus 271 is~~~N~~mk~LTii 285 (339)
T 4ev6_A 271 ENIKMNQIMKILTMV 285 (339)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445667777776554
No 42
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=59.38 E-value=53 Score=24.92 Aligned_cols=55 Identities=9% Similarity=0.102 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 032617 50 DDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNK 104 (137)
Q Consensus 50 D~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~ 104 (137)
-..++.|...+..++.--..+..++++-..-+..++.+++.+..++++...++..
T Consensus 31 p~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~ 85 (256)
T 3na7_A 31 RKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSE 85 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4566667777777777777777777777777777888888888888877777754
No 43
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=58.92 E-value=26 Score=20.83 Aligned_cols=34 Identities=15% Similarity=0.147 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032617 50 DDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQ 83 (137)
Q Consensus 50 D~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~ 83 (137)
...++.|++.|..+|.=.....+|...=|.-||+
T Consensus 17 ~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlDN 50 (52)
T 1jcd_A 17 NAKADQASNDANAARSDAQAAKDDAARANQRADN 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4555666666666666555666666666666554
No 44
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis thaliana}
Probab=57.63 E-value=42 Score=22.99 Aligned_cols=56 Identities=9% Similarity=0.245 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617 52 EITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK 108 (137)
Q Consensus 52 ~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~ 108 (137)
.++.-..+|..+|.=+.+- -+|+.|..+|++...-+-....+|..+..+|..++..
T Consensus 30 E~~~q~~kiekmk~e~~de-y~iKkq~evL~Et~~mipd~~~RL~~a~~~L~~~l~~ 85 (116)
T 3mxz_A 30 EVEREAAKTADMKDKGADP-YDLKQQENVLGESRMMIPDCHKRLESALADLKSTLAE 85 (116)
T ss_dssp HHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3344445556666544444 3588999999999999999999999999999999884
No 45
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=57.45 E-value=14 Score=22.19 Aligned_cols=14 Identities=29% Similarity=0.515 Sum_probs=7.3
Q ss_pred HHHHHHHHHHH--hcC
Q 032617 124 LFFILYMWSKM--FRR 137 (137)
Q Consensus 124 vffvly~l~k~--~~~ 137 (137)
+.+++|.++|. |||
T Consensus 26 L~li~~~LwK~GFFkR 41 (54)
T 2knc_A 26 LTILVLAMWKVGFFKR 41 (54)
T ss_dssp HHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCcccC
Confidence 33455666654 553
No 46
>2w1k_A Putative sortase; pilus, pneumococcus, pathogenicity, transferase; HET: MES; 2.14A {Streptococcus pneumoniae}
Probab=57.45 E-value=2.2 Score=33.27 Aligned_cols=24 Identities=25% Similarity=0.258 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhc
Q 032617 113 HIMHVVLFALFLFFILYMWSKMFR 136 (137)
Q Consensus 113 ~~~~lil~~v~vffvly~l~k~~~ 136 (137)
.||+.++++++++.++++++|++|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~ 247 (252)
T 2w1k_A 224 QWLYRGLVVLAFLGILFVLWKLAR 247 (252)
T ss_dssp ------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345544444444455555555555
No 47
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=56.30 E-value=15 Score=22.11 Aligned_cols=14 Identities=29% Similarity=0.681 Sum_probs=7.3
Q ss_pred HHHHHHHHHHH--hcC
Q 032617 124 LFFILYMWSKM--FRR 137 (137)
Q Consensus 124 vffvly~l~k~--~~~ 137 (137)
+.+++|.++|. |||
T Consensus 23 L~Lii~~LwK~GFFKR 38 (54)
T 2l8s_A 23 LMLLILALWKIGFFKR 38 (54)
T ss_dssp HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCcccC
Confidence 33455666654 553
No 48
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=56.02 E-value=74 Score=25.19 Aligned_cols=16 Identities=13% Similarity=0.088 Sum_probs=9.3
Q ss_pred HHhhhhHHHHHHHHHH
Q 032617 90 KAQAGVKNNMRRLNKS 105 (137)
Q Consensus 90 ~~~~~L~~t~~rl~~v 105 (137)
..+++++..|+++.-+
T Consensus 294 ~is~~~N~imk~LTii 309 (363)
T 2iub_A 294 SVSNKTNEVMKVLTII 309 (363)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455666666666544
No 49
>2kwh_A RAla-binding protein 1; GTPase activation, transport protein; NMR {Homo sapiens} PDB: 2kwi_B*
Probab=55.85 E-value=7.7 Score=23.60 Aligned_cols=22 Identities=27% Similarity=0.253 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032617 68 QEIHSEASFQKDFLDQLQMTLI 89 (137)
Q Consensus 68 ~~I~~Ev~~Qn~lLD~l~~~~d 89 (137)
..|..|++-|..+|+.|...|.
T Consensus 6 e~I~~El~kQe~lL~~LH~e~~ 27 (56)
T 2kwh_A 6 AGIKEEIRRQEFLLNSLHRDLQ 27 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999998874
No 50
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=53.22 E-value=45 Score=21.89 Aligned_cols=52 Identities=12% Similarity=0.217 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---HHHHHhhhhHHHHHHHH
Q 032617 51 DEITGLRSQVKQLRNV-AQEIHSEASFQKDFLDQLQM---TLIKAQAGVKNNMRRLN 103 (137)
Q Consensus 51 ~~Ld~L~~~V~~LK~v-a~~I~~Ev~~Qn~lLD~l~~---~~d~~~~~L~~t~~rl~ 103 (137)
+.|..+...|...+.+ ..+|. .|-+-.+-||+|.+ .+.......++..++++
T Consensus 30 d~l~~vq~eldeVk~IM~~NI~-kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~ 85 (96)
T 1sfc_A 30 RRLQQTQAQVDEVVDIMRVNVD-KVLERDQKLSELDDRADALQAGASQFETSAAKLK 85 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHH-HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666553 33343 34444444444443 33333333444444443
No 51
>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor); four-helix-bundle, chaperone; 2.20A {Saccharomyces cerevisiae} SCOP: a.7.5.1
Probab=51.73 E-value=52 Score=22.13 Aligned_cols=55 Identities=15% Similarity=0.191 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617 52 EITGLRSQVKQLRNVAQ-EIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 52 ~Ld~L~~~V~~LK~va~-~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
.++.-..+|..+|.-+. +- -+++.|..+|++...-+-.+..+|..+..+|..++.
T Consensus 26 E~~~q~~riek~k~~~~~de-y~iKkq~evl~Et~~mipd~~~Rl~~a~~~L~~~l~ 81 (106)
T 1qsd_A 26 ELKDQEAHVAKLKEDKSVDP-YDLKKQEEVLDDTKRLLPTLYEKIREFKEDLEQFLK 81 (106)
T ss_dssp HHHHHHHHHHHHHHCTTSCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666543 43 358899999999999999999999999999999996
No 52
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=51.09 E-value=42 Score=20.85 Aligned_cols=54 Identities=19% Similarity=0.213 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhhhhHHHHHHHHHHHh
Q 032617 54 TGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQ--------MTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 54 d~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~--------~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
+.|......++..+..|.++++.=...++.|. ..|.....+.+....+|...+.
T Consensus 8 ~~l~~~a~~~~~~~~~i~~~l~~l~~~v~~l~~~W~G~A~~af~~~~~~w~~~~~~~~~~L~ 69 (94)
T 3fav_B 8 AGIEAAASAIQGNVTSIHSLLDEGKQSLTKLAAAWGGSGSEAYQGVQQKWDATATELNNALQ 69 (94)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGTCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666677766666666666664 4555566666666665555554
No 53
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=49.60 E-value=1.2e+02 Score=25.63 Aligned_cols=28 Identities=14% Similarity=0.264 Sum_probs=11.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032617 48 DLDDEITGLRSQVKQLRNVAQEIHSEAS 75 (137)
Q Consensus 48 eqD~~Ld~L~~~V~~LK~va~~I~~Ev~ 75 (137)
|-++.++.|+.+.+..+++-..|...++
T Consensus 104 eLe~~l~~lsn~Ts~~~~~i~~Iq~slk 131 (464)
T 1m1j_B 104 DLKDRVAKFSDTSTTMYQYVNMIDNKLV 131 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhh
Confidence 3344444444444443334334544443
No 54
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=48.95 E-value=53 Score=21.43 Aligned_cols=28 Identities=18% Similarity=0.293 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 032617 70 IHSEASFQKDFLDQLQMTLIKAQAGVKN 97 (137)
Q Consensus 70 I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~ 97 (137)
+-+|++.|.+-|++++..+++-..+|+.
T Consensus 49 l~~el~~h~~ei~~le~~i~rhk~~i~~ 76 (84)
T 1gmj_A 49 KENEISHHAKEIERLQKEIERHKQSIKK 76 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788999999999999888776555544
No 55
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=48.84 E-value=47 Score=20.78 Aligned_cols=54 Identities=7% Similarity=0.086 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhhhhHHHHHHHHHHHh
Q 032617 54 TGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQ--------MTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 54 d~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~--------~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
++|.+...++++.+..|.+++..=...++.|. +.|......++..+.++...+.
T Consensus 11 e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~~~W~G~a~~aF~~~~~~~~~~~~~~~~~L~ 72 (98)
T 3gwk_C 11 EELRSSAQKYTAGSQQVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLE 72 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCSSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555554444444442 3344444444444444444443
No 56
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1
Probab=48.77 E-value=42 Score=22.60 Aligned_cols=57 Identities=14% Similarity=0.207 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617 51 DEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK 108 (137)
Q Consensus 51 ~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~ 108 (137)
..++.-..+|..+|.-+.+-+ +++.|..+|++...-+-....+|..+..+|..++..
T Consensus 28 kE~~~q~~riek~k~e~~Dey-~iKkq~evl~Et~~mipd~~~Rl~~a~~~L~~~l~~ 84 (108)
T 1h7c_A 28 KEAKQQEEKIEKMRAEDGENY-DIKKQAEILQESRMMIPDCQRRLEAAYLDLQRILEN 84 (108)
T ss_dssp HHHHHHHHHHHHHHHHHCSCT-HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence 344445556666665544432 688999999999999999999999999999999973
No 57
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=47.86 E-value=25 Score=19.97 Aligned_cols=14 Identities=29% Similarity=0.515 Sum_probs=7.6
Q ss_pred HHHHHHHHHHH--hcC
Q 032617 124 LFFILYMWSKM--FRR 137 (137)
Q Consensus 124 vffvly~l~k~--~~~ 137 (137)
+.+++|.++|. |||
T Consensus 24 L~li~~~LwK~GFFkR 39 (42)
T 2k1a_A 24 LTILVLAMWKVGFFKR 39 (42)
T ss_dssp HHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHcCcccC
Confidence 34555666654 553
No 58
>2bez_C E2 glycoprotein; coiled coil, membrane fusion, severe acute respiratory syndrome, viral protein; 1.6A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_A 1zvb_A
Probab=47.71 E-value=53 Score=21.08 Aligned_cols=69 Identities=9% Similarity=0.180 Sum_probs=47.4
Q ss_pred hhHhhhcchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhhHHHHHHHHHH
Q 032617 37 EIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKD----FLDQLQMTLIKAQAGVKNNMRRLNKS 105 (137)
Q Consensus 37 ~~q~~~~~~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~----lLD~l~~~~d~~~~~L~~t~~rl~~v 105 (137)
.+|.++..+-...+.-+..+.+.....-.-=..|.+-|..|.. ++..|.+.|.-....+..-..|+.++
T Consensus 2 vL~~NQk~iA~sFN~A~~~i~~g~~tts~AL~kiQdVVN~q~~aL~~L~~qL~~NFgAISssi~dIy~RLd~l 74 (77)
T 2bez_C 2 VLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKV 74 (77)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Confidence 3455555555667778888877777766656677777777765 45556677777777777777777765
No 59
>4aj5_A SKA1, spindle and kinetochore-associated protein 1; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=46.05 E-value=62 Score=21.40 Aligned_cols=46 Identities=20% Similarity=0.395 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617 62 QLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK 108 (137)
Q Consensus 62 ~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~ 108 (137)
.+|.+=..||+|+-.=|++|+.++-.+..-.. +.+..+-+...+..
T Consensus 34 ~lk~~L~Kig~Ei~~l~eLLn~~E~eV~~Qe~-~~~sLKEL~~s~e~ 79 (91)
T 4aj5_A 34 TLKTVLNKIGDEIIVINELLNKLELEIQYQEQ-TNNSLKELCESLEE 79 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 45566678999999999999999999987554 44556666666554
No 60
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=45.37 E-value=19 Score=20.70 Aligned_cols=10 Identities=0% Similarity=0.119 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 032617 124 LFFILYMWSK 133 (137)
Q Consensus 124 vffvly~l~k 133 (137)
+.+++|+++|
T Consensus 27 i~~~~~~~~R 36 (44)
T 2ks1_B 27 VALGIGLFMR 36 (44)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 3344444444
No 61
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=45.32 E-value=20 Score=20.64 Aligned_cols=9 Identities=0% Similarity=0.128 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q 032617 125 FFILYMWSK 133 (137)
Q Consensus 125 ffvly~l~k 133 (137)
.+++|+++|
T Consensus 27 ~~~~~~~~R 35 (44)
T 2l2t_A 27 GLTFAVYVR 35 (44)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 344444444
No 62
>3p8c_F ABL interactor 2; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=43.81 E-value=90 Score=22.63 Aligned_cols=47 Identities=13% Similarity=0.137 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 032617 53 ITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNM 99 (137)
Q Consensus 53 Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~ 99 (137)
...|++.+-.+-.+|..+-+=++.|..-++.|+..+......+.-=.
T Consensus 56 ~qsLaSVAyqIn~lA~~ll~lLd~Q~~~l~~mes~v~~l~Q~v~ih~ 102 (159)
T 3p8c_F 56 TQSLASVAYLINTLANNVLQMLDIQASQLRRMESSINHISQTVDIHK 102 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777778888888888888878888887777666654433
No 63
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=43.07 E-value=20 Score=18.27 Aligned_cols=11 Identities=18% Similarity=0.501 Sum_probs=5.6
Q ss_pred HHHHHHHHHHH
Q 032617 55 GLRSQVKQLRN 65 (137)
Q Consensus 55 ~L~~~V~~LK~ 65 (137)
.|.+++..||+
T Consensus 11 aleqkiaalkq 21 (28)
T 3ra3_A 11 ALEQKIAALKQ 21 (28)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44555555554
No 64
>4i0x_A ESAT-6-like protein MAB_3112; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=42.23 E-value=63 Score=20.38 Aligned_cols=53 Identities=6% Similarity=0.055 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhhhhHHHHHHHHHHHh
Q 032617 55 GLRSQVKQLRNVAQEIHSEASFQKDFLDQLQ--------MTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 55 ~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~--------~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
+|.....+++..+..|.++++.=...++.|. ..|..+..+.+...++|...+.
T Consensus 4 el~~~a~~~~~~~~~i~~~l~~l~~~v~~l~~~W~G~Aa~af~~~~~~w~~~a~~l~~~L~ 64 (94)
T 4i0x_A 4 EVGALSKFAASLADQMRAGSNSLDRDVQSLFGVWKGSAADAYRSGWDEMQDGATKVWNALT 64 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555554444444442 3444444444444444444443
No 65
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=42.13 E-value=34 Score=17.45 Aligned_cols=17 Identities=29% Similarity=0.661 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032617 116 HVVLFALFLFFILYMWS 132 (137)
Q Consensus 116 ~lil~~v~vffvly~l~ 132 (137)
.+|++++..-.++|.|+
T Consensus 9 lLIviav~aaVllylW~ 25 (26)
T 3j1r_A 9 LLILIAVAAAVLLYTWV 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 35556666666677664
No 66
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=40.41 E-value=1.1e+02 Score=22.76 Aligned_cols=49 Identities=14% Similarity=0.215 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 032617 50 DDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNN 98 (137)
Q Consensus 50 D~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t 98 (137)
....+.+...+..+...+..+.+++..-..-++.+.+.+......+...
T Consensus 24 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (213)
T 3g67_A 24 QAKSDQLVSVIQDMEKISENIMEELKKSGTNVDQIVERVKEASSQIGET 72 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445555555555555555555555555544444444333
No 67
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=39.83 E-value=33 Score=21.92 Aligned_cols=16 Identities=13% Similarity=-0.002 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 032617 119 LFALFLFFILYMWSKM 134 (137)
Q Consensus 119 l~~v~vffvly~l~k~ 134 (137)
+.++++.+++++++|+
T Consensus 19 ~gilliGllllliwk~ 34 (79)
T 2knc_B 19 GAILLIGLAALLIWKL 34 (79)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444555555553
No 68
>3qbr_A SJA, sjchgc06286 protein; helical bundle, BCL-2-like fold, apoptosis; HET: NHE; 2.60A {Schistosoma japonicum}
Probab=39.63 E-value=1.1e+02 Score=22.50 Aligned_cols=65 Identities=14% Similarity=0.119 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHhhhhHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHH
Q 032617 59 QVKQLRNVAQEIHSEASFQKDFLDQLQMTL----------IKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLFALFLFFIL 128 (137)
Q Consensus 59 ~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~----------d~~~~~L~~t~~rl~~v~~~~~~~~~~~lil~~v~vffvl 128 (137)
-+.+|+.++.+|..-.+.| .+|.++.... +.+......++..+- . +.++==++.+|++...+.+
T Consensus 61 v~~~L~~iGDEle~r~e~q-~ml~~l~~ql~~~~~~~lt~~tA~~~F~~Va~eLF---D--GiNWGRIVaLfaFgg~La~ 134 (179)
T 3qbr_A 61 IIHSLLQLVGDFNQRFSQT-HEIEPVAQSLGIDSDKPVDKTALEIFYLEILNGLF---E--KLNWGRIVAMFAFLRILVL 134 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHH-CCSHHHHHHHTCSSSSCCCHHHHHHHHHHHHHHHT---S--SCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhH-HHHHHHHHhhccccccCCCchHHHHHHHHHHHHHh---C--CCCHHHHHHHHHHHHHHHH
Confidence 3456666655555443333 5777776655 455555555555443 2 3332223444544444444
Q ss_pred H
Q 032617 129 Y 129 (137)
Q Consensus 129 y 129 (137)
+
T Consensus 135 ~ 135 (179)
T 3qbr_A 135 R 135 (179)
T ss_dssp H
T ss_pred H
Confidence 4
No 69
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=39.30 E-value=19 Score=19.70 Aligned_cols=14 Identities=29% Similarity=0.482 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHH
Q 032617 69 EIHSEASFQKDFLDQ 83 (137)
Q Consensus 69 ~I~~Ev~~Qn~lLD~ 83 (137)
+| +|++.||.+|+.
T Consensus 15 DI-ddlkrQN~~Le~ 28 (34)
T 1a93_B 15 DI-DDLKRQNALLEQ 28 (34)
T ss_dssp HH-HHHHHHHHHHHH
T ss_pred hH-HHHHHHHHHHHH
Confidence 44 458888888774
No 70
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=39.17 E-value=72 Score=20.18 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617 70 IHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK 108 (137)
Q Consensus 70 I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~ 108 (137)
+..-+..|.+.|++|++.+-.-+..+..-.+++..+.++
T Consensus 19 LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~r 57 (78)
T 3efg_A 19 LETRLSFQEQALTELSEALADARLTGARNAELIRHLLED 57 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666666666666666555553
No 71
>1s0p_A CAP, adenylyl cyclase-associated protein; alpha helix bundle, membrane protein; 1.40A {Dictyostelium discoideum} SCOP: a.192.1.1 PDB: 1tjf_A
Probab=38.76 E-value=94 Score=22.76 Aligned_cols=29 Identities=10% Similarity=0.162 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032617 55 GLRSQVKQLRNVAQEIHSEASFQKDFLDQ 83 (137)
Q Consensus 55 ~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~ 83 (137)
-+.+.|..+-..+..||.+|.+|.+++.+
T Consensus 8 ~i~~~l~~~~~~s~~iGg~v~~~a~~v~~ 36 (176)
T 1s0p_A 8 LVDQHITPFVALSKKLAPEVGNQVEQLVK 36 (176)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHHH
Confidence 47889999999999999999999887543
No 72
>3h6p_C ESAT-6-like protein ESXR; four-helix bundle, structural genomics, PSI-2, protein struc initiative, TB structural genomics consortium; 1.91A {Mycobacterium tuberculosis} PDB: 2kg7_B 3q4h_B
Probab=38.49 E-value=44 Score=21.03 Aligned_cols=55 Identities=11% Similarity=0.046 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhhhhHHHHHHHHHHHh
Q 032617 53 ITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQ--------MTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 53 Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~--------~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
.+.|...+..++..+..|.+++++=...|+.|. ..|.....+...+..+|...+.
T Consensus 8 ~~~~~~~a~~i~~~~~~i~~~l~~l~~~v~~L~~~W~G~A~~ay~~~~~~W~~~~~~l~~~L~ 70 (96)
T 3h6p_C 8 YPAMMAHAGDMAGYAGTLQSLGADIASEQAVLSSAWQGDTGITYQGWQTQWNQALEDLVRAYQ 70 (96)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHTGGGCCTTSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666667777766666666666553 3355555555555555555554
No 73
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=38.00 E-value=1.7e+02 Score=24.14 Aligned_cols=26 Identities=4% Similarity=0.029 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617 82 DQLQMTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 82 D~l~~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
+............+.....+++.+.+
T Consensus 554 ~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 554 DNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444444444
No 74
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=37.96 E-value=33 Score=21.68 Aligned_cols=17 Identities=12% Similarity=0.132 Sum_probs=7.5
Q ss_pred HHHHHHhhhhHHHHHHH
Q 032617 86 MTLIKAQAGVKNNMRRL 102 (137)
Q Consensus 86 ~~~d~~~~~L~~t~~rl 102 (137)
+.+........+..+++
T Consensus 53 ~~L~~~s~~F~k~A~~l 69 (80)
T 1l4a_A 53 DALQAGASQFEASAGKL 69 (80)
T ss_dssp HTTTTTSTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333344444455554
No 75
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=37.81 E-value=70 Score=19.62 Aligned_cols=53 Identities=6% Similarity=0.070 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhhhhHHHHHHHHHHHh
Q 032617 55 GLRSQVKQLRNVAQEIHSEASFQKDFLDQLQ--------MTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 55 ~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~--------~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
.|.....+++..+..|.+++..=+..++.|. ..|.......+....++...+.
T Consensus 10 ~l~~~A~~~~~~~~~l~~~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~ 70 (97)
T 2vs0_A 10 EIRAKSQSYGQGSDQIRQILSDLTRAQGEIAANWEGQAFSRFEEQFQQLSPKVEKFAQLLE 70 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444545555544444444444442 3344444444444444444443
No 76
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=37.31 E-value=1.7e+02 Score=24.07 Aligned_cols=31 Identities=10% Similarity=0.067 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 032617 76 FQKDFLDQLQMTLIKAQAGVKNNMRRLNKSI 106 (137)
Q Consensus 76 ~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~ 106 (137)
+.++.++.++...++....++...+++..+-
T Consensus 534 ~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~ 564 (597)
T 3oja_B 534 AKQKETEDLEQENIALEKQLDNKRAKQAELR 564 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcchhhHHhhhHHHHHHHhhhhhHHHHHH
Confidence 3334444444555555554444444444443
No 77
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=37.28 E-value=25 Score=27.40 Aligned_cols=20 Identities=20% Similarity=0.384 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 032617 113 HIMHVVLFALFLFFILYMWS 132 (137)
Q Consensus 113 ~~~~lil~~v~vffvly~l~ 132 (137)
.||.+.+++.++|.++|+++
T Consensus 56 ~ww~~~f~~~iv~~~~y~~~ 75 (311)
T 3mk7_C 56 RWWFLLFIGTLVFGILYLVL 75 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 45555555566666666654
No 78
>2fyz_B Fusion protein, fusion glycoprotein F0; mumps virus fusion protein core, protein binding; 2.20A {Mumps virus} SCOP: h.3.2.1
Probab=37.03 E-value=17 Score=21.33 Aligned_cols=32 Identities=13% Similarity=0.101 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 032617 68 QEIHSEASFQKDFLDQLQMTLIKAQAGVKNNM 99 (137)
Q Consensus 68 ~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~ 99 (137)
.||..|+..=|.-|++-.+-.+++...|..+.
T Consensus 10 LDISseL~~iNnsL~~A~~~I~eSn~~L~~V~ 41 (48)
T 2fyz_B 10 IDISTELSKVNASLQNTVKYIKESNHQLQSVI 41 (48)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46666666666666655555555555554433
No 79
>3kpe_B Fusion glycoprotein F0; peptide-small-molecule complex, alpha helix, coiled-coil, EN protein, fusion protein; HET: TM3 PG4; 1.47A {Human respiratory syncytial virus}
Probab=36.80 E-value=34 Score=19.14 Aligned_cols=31 Identities=13% Similarity=0.296 Sum_probs=16.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032617 47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQL 84 (137)
Q Consensus 47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l 84 (137)
+|.|..|+....+|.+-+.. ++..|++|+++
T Consensus 5 DqFdvai~qV~e~InqS~~~-------i~~Sd~lL~~~ 35 (39)
T 3kpe_B 5 DEFDASISQVNEKINQSLAF-------IRKSDELLHNV 35 (39)
T ss_dssp SHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 35556666666665544433 45566666554
No 80
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=35.70 E-value=1.4e+02 Score=25.31 Aligned_cols=26 Identities=4% Similarity=0.121 Sum_probs=12.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHH
Q 032617 47 ADLDDEITGLRSQVKQLRNVAQEIHS 72 (137)
Q Consensus 47 ~eqD~~Ld~L~~~V~~LK~va~~I~~ 72 (137)
++-+..|+.|+.+.+..+++-..|.+
T Consensus 98 ~~Le~~l~~isn~Ts~a~~~v~~ik~ 123 (461)
T 3ghg_B 98 DELNNNVEAVSQTSSSSFQYMYLLKD 123 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 44445555555555544554444444
No 81
>2ieq_A S glycoprotein, spike glycoprotein, peplomer protein, E2; membrane fusion, virus entry, six-HEL bundle, viral protein; 1.75A {Human coronavirus}
Probab=35.59 E-value=49 Score=22.61 Aligned_cols=33 Identities=15% Similarity=0.178 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032617 49 LDDEITGLRSQVKQLRNVAQEIHSEASFQKDFL 81 (137)
Q Consensus 49 qD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lL 81 (137)
-=.+||.|......|-+++++...-++.=|+.|
T Consensus 74 i~~elD~LEa~A~~l~~~~~elq~~idn~n~tl 106 (109)
T 2ieq_A 74 LSSELKQLEAKTASLFQTTVELQGLIDQINSTY 106 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 356889999999999999988888777766654
No 82
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=35.59 E-value=79 Score=21.82 Aligned_cols=30 Identities=17% Similarity=0.336 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032617 52 EITGLRSQVKQLRNVAQEIHSEASFQKDFL 81 (137)
Q Consensus 52 ~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lL 81 (137)
.+..|..+|..|+..-..+...+..|+.++
T Consensus 17 ~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~ 46 (182)
T 3kqg_A 17 KASALNTKIRALQGSLENMSKLLKRQNDIL 46 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555555554445555555555544
No 83
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=35.34 E-value=1.2e+02 Score=21.58 Aligned_cols=51 Identities=12% Similarity=0.125 Sum_probs=38.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 032617 47 ADLDDEITGLRSQVKQLRNVAQEI-----------HSEASFQKDFLDQLQMTLIKAQAGVKN 97 (137)
Q Consensus 47 ~eqD~~Ld~L~~~V~~LK~va~~I-----------~~Ev~~Qn~lLD~l~~~~d~~~~~L~~ 97 (137)
..-...|..|.+-+.+.|-+=..| .+.+..|++|+.||.++++++.....-
T Consensus 64 ~~a~~eL~~m~~~i~~ekP~WKKiWE~EL~~VceEQqfl~~QedL~~DL~eDL~ka~etf~l 125 (141)
T 3okq_A 64 ENAQADVLKLQEFIDTEKPHWKKTWEAELDKVCEEQQFLTLQEELILDLKEDLGKALETFDL 125 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888887765555 456778999999999999988765543
No 84
>3fav_A ESAT-6-like protein ESXB; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_A
Probab=34.98 E-value=85 Score=19.76 Aligned_cols=27 Identities=22% Similarity=0.222 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 032617 72 SEASFQKDFLDQLQMTLIKAQAGVKNN 98 (137)
Q Consensus 72 ~Ev~~Qn~lLD~l~~~~d~~~~~L~~t 98 (137)
.....-+..|+++...++.+......+
T Consensus 61 ~~~~~l~~~L~~i~~~l~~~a~~y~~~ 87 (101)
T 3fav_A 61 EAANKQKQELDEISTNIRQAGVQYSRA 87 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444443333
No 85
>2kxh_B Peptide of FAR upstream element-binding protein 1; RRM, FIR, FBP, protein-protein complex, protein binding; NMR {Homo sapiens}
Probab=34.93 E-value=12 Score=20.06 Aligned_cols=20 Identities=15% Similarity=0.446 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032617 54 TGLRSQVKQLRNVAQEIHSE 73 (137)
Q Consensus 54 d~L~~~V~~LK~va~~I~~E 73 (137)
|...+.++|.|+|+-.|+.+
T Consensus 8 daFadA~~RaRQIaAKig~~ 27 (31)
T 2kxh_B 8 DAFKDALQRARQIAAKIGGD 27 (31)
T ss_dssp SHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHhcCC
Confidence 45667889999999888765
No 86
>1oxj_A RNA-binding protein smaug; SAM domain, PHAT domain; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 a.118.1.13
Probab=34.40 E-value=39 Score=24.98 Aligned_cols=60 Identities=12% Similarity=0.191 Sum_probs=50.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617 48 DLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK 108 (137)
Q Consensus 48 eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~ 108 (137)
=.|+.|+.++=+...-|.+...| ++++++...|-.++.++-..+..|+.+...++.++.+
T Consensus 37 LTdedL~~~GVT~GARrKIL~aI-q~Lrer~~~l~~le~~~~~g~~~l~~~l~el~~i~~t 96 (173)
T 1oxj_A 37 ITEDFLQSVGVTKGASHKLALCI-DKLKERANILNRVEQELLSGQMELSTAVEELTNIVLT 96 (173)
T ss_dssp CCHHHHHHTTCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHTTTTS
T ss_pred cCHHHHHHCCCchHHHHHHHHHH-HHHHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHhC
Confidence 35777888776667778888888 4688888999999999998667899999999998874
No 87
>2pjw_H Uncharacterized protein YHL002W; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=34.07 E-value=97 Score=20.18 Aligned_cols=44 Identities=25% Similarity=0.241 Sum_probs=34.4
Q ss_pred HhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032617 47 ADLDDEITGLRSQVKQLRN-VAQEIHSEASFQKDFLDQLQMTLIKA 91 (137)
Q Consensus 47 ~eqD~~Ld~L~~~V~~LK~-va~~I~~Ev~~Qn~lLD~l~~~~d~~ 91 (137)
--+|.++..|.++|-.||- ++.-|++-....+++ -+|++.|.++
T Consensus 31 ~~~d~eiq~LY~~v~~lRPkL~~li~kysqKk~eL-~~Ln~kl~~a 75 (88)
T 2pjw_H 31 VLQDPHIGDMYGSVTPLRPQVTRMLGKYAKEKEDM-LSLRQVLANA 75 (88)
T ss_dssp HHSCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred hcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 4578999999999999997 999999998888744 4455544443
No 88
>3din_D Preprotein translocase subunit SECE; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=34.06 E-value=65 Score=19.49 Aligned_cols=19 Identities=11% Similarity=-0.038 Sum_probs=8.7
Q ss_pred HHhhhhHHHHHHHHHHHhh
Q 032617 90 KAQAGVKNNMRRLNKSIVK 108 (137)
Q Consensus 90 ~~~~~L~~t~~rl~~v~~~ 108 (137)
+...-++.+...++|+..-
T Consensus 3 ~~~~f~~~v~~ElkKV~WP 21 (65)
T 3din_D 3 KLRKFFREVIAEAKKISWP 21 (65)
T ss_dssp -------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCc
Confidence 4445566677777787773
No 89
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=32.86 E-value=79 Score=18.75 Aligned_cols=41 Identities=17% Similarity=0.200 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032617 53 ITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQA 93 (137)
Q Consensus 53 Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~ 93 (137)
.|.|-..|..||.=...+..|+++-..-|..|+++-.+...
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKe 45 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKE 45 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHH
Confidence 45677777778877778888888777777777666544333
No 90
>3cx5_D Cytochrome C1, heme protein, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: a.3.1.3 f.23.11.1 PDB: 1kyo_D* 2ibz_D* 3cxh_D* 1kb9_D* 1p84_D* 1ezv_D*
Probab=32.76 E-value=34 Score=26.62 Aligned_cols=18 Identities=17% Similarity=0.233 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032617 116 HVVLFALFLFFILYMWSK 133 (137)
Q Consensus 116 ~lil~~v~vffvly~l~k 133 (137)
++++|++++++++|++-|
T Consensus 211 ~vl~fL~il~~l~y~~kr 228 (248)
T 3cx5_D 211 KTVIILSSLYLLSIWVKK 228 (248)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555543
No 91
>2yiu_B Cytochrome C1, heme protein; oxidoreductase; HET: HEM SMA HEC; 2.70A {Paracoccus denitrificans}
Probab=32.58 E-value=34 Score=26.87 Aligned_cols=18 Identities=33% Similarity=0.543 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032617 116 HVVLFALFLFFILYMWSK 133 (137)
Q Consensus 116 ~lil~~v~vffvly~l~k 133 (137)
++++|++++++++|++-|
T Consensus 233 ~vl~fL~il~~l~y~~kr 250 (263)
T 2yiu_B 233 VSVIFLIVLAALLYLTNK 250 (263)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555544455555544
No 92
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=31.38 E-value=1.1e+02 Score=20.03 Aligned_cols=57 Identities=12% Similarity=0.203 Sum_probs=40.8
Q ss_pred cchhHhhHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 032617 43 DPVNADLDDEITGLRSQVKQLR---------NVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNM 99 (137)
Q Consensus 43 ~~~~~eqD~~Ld~L~~~V~~LK---------~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~ 99 (137)
+.+|+|-....+.|..++.++. ..-..|...+++=.++|+.|+-..-+.....+..+
T Consensus 18 e~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~ 83 (102)
T 2qyw_A 18 EKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNPM 83 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4456677777777877777773 34557888888888999999988877665554433
No 93
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=31.35 E-value=2.2e+02 Score=23.50 Aligned_cols=36 Identities=19% Similarity=0.347 Sum_probs=23.9
Q ss_pred hhHhhhcchhHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 032617 37 EIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHS 72 (137)
Q Consensus 37 ~~q~~~~~~~~eqD~~Ld~L~~~V~~LK~va~~I~~ 72 (137)
++|--+++.++.....++.|...|..+++...+|+.
T Consensus 53 rLqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~ 88 (390)
T 1deq_A 53 RMKGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNT 88 (390)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 366666666666677777787777777665555544
No 94
>1pp9_D Cytochrome C-1, cytochrome C1, heme protein, mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: a.3.1.3 f.23.11.1 PDB: 1bgy_D* 1be3_D* 1l0n_D* 1ntk_D* 1ntm_D* 1ntz_D* 1nu1_D* 1l0l_D* 1ppj_D* 1sqb_D* 1sqp_D* 1sqq_D* 1sqv_D* 1sqx_D* 2a06_D* 2fyu_D* 2ybb_D* 1bcc_D* 2bcc_D* 3bcc_D* ...
Probab=30.90 E-value=38 Score=26.20 Aligned_cols=18 Identities=17% Similarity=0.412 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032617 116 HVVLFALFLFFILYMWSK 133 (137)
Q Consensus 116 ~lil~~v~vffvly~l~k 133 (137)
++++|++++++++|++-|
T Consensus 207 ~vl~fL~il~~l~y~~kr 224 (241)
T 1pp9_D 207 KMLLMMGLLLPLVYAMKR 224 (241)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555555544
No 95
>1zrt_D Cytochrome C1; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein; HET: HEM SMA HEC; 3.50A {Rhodobacter capsulatus}
Probab=30.66 E-value=38 Score=26.48 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032617 116 HVVLFALFLFFILYMWSK 133 (137)
Q Consensus 116 ~lil~~v~vffvly~l~k 133 (137)
++++|++++++++|++-|
T Consensus 230 ~vl~fL~il~~l~y~~kr 247 (258)
T 1zrt_D 230 VAMVMLGLLSVMLYLTNK 247 (258)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555555544
No 96
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=30.04 E-value=1e+02 Score=19.16 Aligned_cols=40 Identities=20% Similarity=0.273 Sum_probs=26.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032617 47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQM 86 (137)
Q Consensus 47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~ 86 (137)
.--++++.+|..+|..|......+..|...-...++.|..
T Consensus 25 eRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~ 64 (70)
T 1gd2_E 25 KRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEE 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468899999999999988776666555444444444433
No 97
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=29.97 E-value=1e+02 Score=19.23 Aligned_cols=52 Identities=6% Similarity=0.045 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 032617 54 TGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKS 105 (137)
Q Consensus 54 d~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v 105 (137)
+.|-.++..||.=.-...+.+..-+.-|...+.....+..-+....+|+..+
T Consensus 2 ~~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~l 53 (81)
T 1ic2_A 2 DAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGT 53 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4556666666666655566665555555555555555555555555555444
No 98
>2qjy_B Cytochrome C1; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_B* 2qjp_B* 2qjk_B*
Probab=29.43 E-value=41 Score=26.48 Aligned_cols=18 Identities=33% Similarity=0.554 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032617 116 HVVLFALFLFFILYMWSK 133 (137)
Q Consensus 116 ~lil~~v~vffvly~l~k 133 (137)
++++|++++++++|++-|
T Consensus 232 ~Vl~fL~il~~l~y~~kr 249 (269)
T 2qjy_B 232 TAVMFLTVLSVLLYLTNK 249 (269)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555544
No 99
>2ifo_A Inovirus; helical virus; NMR {Filamentous phage} SCOP: h.1.4.1
Probab=29.23 E-value=40 Score=19.55 Aligned_cols=19 Identities=16% Similarity=-0.012 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 032617 118 VLFALFLFFILYMWSKMFR 136 (137)
Q Consensus 118 il~~v~vffvly~l~k~~~ 136 (137)
|..+++..++....+||.|
T Consensus 25 IG~aVLgV~v~i~v~k~IR 43 (46)
T 2ifo_A 25 IGGAVLTVMVGIKVYKWVR 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555544
No 100
>1nig_A Hypothetical protein TA1238; structural genomics, four helixbundle, PSI, protein structur initiative; 2.00A {Thermoplasma acidophilum} SCOP: a.25.2.1
Probab=28.75 E-value=1.2e+02 Score=21.46 Aligned_cols=63 Identities=14% Similarity=0.108 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh--------h--cCCchhHHHHHHHHHHHHHHHHHHHH
Q 032617 72 SEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV--------K--HGSNHIMHVVLFALFLFFILYMWSKM 134 (137)
Q Consensus 72 ~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~--------~--~~~~~~~~lil~~v~vffvly~l~k~ 134 (137)
.|.++--++||-+-+++-.-..+|+...+|=-+... + +++++..|+++..--+=.-+||+.++
T Consensus 45 ~E~rE~lDilDtv~n~LyD~e~~Lnd~~~K~Ln~teE~W~DIkEK~nnGnk~s~Ymf~A~sh~~~Av~~~~~m 117 (152)
T 1nig_A 45 RETREILDIIDTVYNSLSDPESKLNDFQEKRLNFTEEDWYDIKEKANNGNRWSLYMFLARSAVDSAVYWSYRM 117 (152)
T ss_dssp HHHHHHHHHHHHHHHTTTC--CCCCHHHHHHHHHCCCCCCCHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhccCchhHhhHHHHHhcCCchHHHHhHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 356666677777777777777778776655333321 1 35667777777777777888998886
No 101
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=28.68 E-value=96 Score=19.56 Aligned_cols=23 Identities=4% Similarity=0.027 Sum_probs=8.3
Q ss_pred HHHHHHhhhhHHHHHHHHHHHhh
Q 032617 86 MTLIKAQAGVKNNMRRLNKSIVK 108 (137)
Q Consensus 86 ~~~d~~~~~L~~t~~rl~~v~~~ 108 (137)
++++...+.+++-.+.-.++++.
T Consensus 3 ~~~~~~~e~~~~f~kd~~rvlk~ 25 (74)
T 1rh5_B 3 TDFNQKIEQLKEFIEECRRVWLV 25 (74)
T ss_dssp ---------CCHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555556666664
No 102
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=28.53 E-value=1.3e+02 Score=19.73 Aligned_cols=51 Identities=8% Similarity=0.233 Sum_probs=34.1
Q ss_pred hhHhhHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 032617 45 VNADLDDEITGLRSQVKQLR--------NVAQEIHSEASFQKDFLDQLQMTLIKAQAGV 95 (137)
Q Consensus 45 ~~~eqD~~Ld~L~~~V~~LK--------~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L 95 (137)
+|++-....+.|..++.++. ..-..|...+++=.++|+.|+-.+-+.....
T Consensus 10 YE~df~~l~~~i~~kl~~i~~~~geerk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~ 68 (102)
T 1vcs_A 10 YEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQS 68 (102)
T ss_dssp SHHHHHHHHHHHHHHHHHGGGSCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred HHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHh
Confidence 34455556666666666554 3455788888888899999987776655333
No 103
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=27.83 E-value=2.2e+02 Score=22.22 Aligned_cols=51 Identities=16% Similarity=0.203 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 032617 50 DDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMR 100 (137)
Q Consensus 50 D~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~ 100 (137)
....+.|......+...+.++...+.+|..-++++...++.....+.....
T Consensus 58 ~~~~~~l~~~~~~l~~~~~~~~~~~~~q~~~~~~~~~~~~el~~~~~~~~~ 108 (341)
T 3zx6_A 58 RNGANAIYSGASEIATGNNDLSSRTEQQAASLEETAASMEQLTATVKQNAE 108 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555556666666666666666666555555544444333
No 104
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=27.66 E-value=1.9e+02 Score=21.45 Aligned_cols=60 Identities=17% Similarity=0.237 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617 48 DLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 48 eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
+-.+.++.+...+..+......|..-.++|..-.+++...++........+...+..+..
T Consensus 144 ~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~~~~~~~~~~~ 203 (227)
T 1qu7_A 144 SAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNAALVEQSAA 203 (227)
T ss_dssp HHTTHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777777777777778888777777777777666555555544444443
No 105
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=27.60 E-value=92 Score=17.88 Aligned_cols=39 Identities=10% Similarity=0.252 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032617 55 GLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQA 93 (137)
Q Consensus 55 ~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~ 93 (137)
-|..++.+||.=...+...-+.-.+++.++.+.+.+..+
T Consensus 7 ylrkkiarlkkdnlqlerdeqnlekiianlrdeiarlen 45 (52)
T 3he5_B 7 YLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHH
Confidence 467778888765544433222223455555555554443
No 106
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=27.47 E-value=3e+02 Score=23.79 Aligned_cols=37 Identities=24% Similarity=0.373 Sum_probs=23.3
Q ss_pred hhHhhhcchhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 032617 37 EIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHSE 73 (137)
Q Consensus 37 ~~q~~~~~~~~eqD~~Ld~L~~~V~~LK~va~~I~~E 73 (137)
++|--+++-|......|++|...+..+.+-..+|..-
T Consensus 50 rLQglLdkqErDltkrINELKnqLEdlsKnsKdseqy 86 (562)
T 3ghg_A 50 RMKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSL 86 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred chhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHH
Confidence 6666666666667777777777776665544444443
No 107
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=26.45 E-value=78 Score=17.13 Aligned_cols=10 Identities=20% Similarity=0.335 Sum_probs=4.4
Q ss_pred chhHHHHHHH
Q 032617 112 NHIMHVVLFA 121 (137)
Q Consensus 112 ~~~~~lil~~ 121 (137)
++.+..++++
T Consensus 6 ~GTl~~V~il 15 (34)
T 3s8f_C 6 KGALAVILVL 15 (34)
T ss_dssp HHHHHHHHHH
T ss_pred cceehHHHHH
Confidence 3445444443
No 108
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=25.64 E-value=3.3e+02 Score=23.58 Aligned_cols=41 Identities=12% Similarity=0.106 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 032617 62 QLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRL 102 (137)
Q Consensus 62 ~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl 102 (137)
.|+.--..|..+|+.|-..|..|...+++.-.+|++.=..|
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666666666666666665555555444443333
No 109
>1wyy_A E2 glycoprotein; membrane fusion, severe acute respiratory syndrome, viral PR; 2.20A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1wnc_A 2fxp_A
Probab=25.46 E-value=1.9e+02 Score=20.72 Aligned_cols=76 Identities=8% Similarity=0.164 Sum_probs=57.0
Q ss_pred CCchhhHhhhcchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617 33 AGSDEIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKD----FLDQLQMTLIKAQAGVKNNMRRLNKSIVK 108 (137)
Q Consensus 33 ~~~~~~q~~~~~~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~----lLD~l~~~~d~~~~~L~~t~~rl~~v~~~ 108 (137)
..++.+|.++..+-...+.-+....+.....-.-=..|.+-|..|.. ++..|.+.|.-....+..-..|+..+--.
T Consensus 11 ~~~~vL~~NQk~iA~sFN~A~~~~~~g~~tts~AL~kiQ~VVN~q~~aL~~l~~qL~~nFgAISssi~dIy~rLd~leAd 90 (149)
T 1wyy_A 11 VTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAE 90 (149)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 35578888888877778888888877777776666677777777765 55566778888888888888888877654
No 110
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=25.17 E-value=1.2e+02 Score=18.24 Aligned_cols=26 Identities=4% Similarity=0.012 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032617 50 DDEITGLRSQVKQLRNVAQEIHSEAS 75 (137)
Q Consensus 50 D~~Ld~L~~~V~~LK~va~~I~~Ev~ 75 (137)
+...+.|.+.+...++....+..|++
T Consensus 47 n~m~~~l~~~~~~~~~~~~~~shel~ 72 (114)
T 3zcc_A 47 ERLRRSLKQLADDGTLLMAGVSHDLR 72 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHc
Confidence 44455555555554444444444444
No 111
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=24.92 E-value=55 Score=25.29 Aligned_cols=13 Identities=23% Similarity=0.416 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHh
Q 032617 123 FLFFILYMWSKMF 135 (137)
Q Consensus 123 ~vffvly~l~k~~ 135 (137)
+..+++|+++|+.
T Consensus 47 V~~ll~~~~~r~r 59 (262)
T 2gsm_B 47 VTLLILYAVWRFH 59 (262)
T ss_dssp HHHHHHHHHHHSB
T ss_pred HHHHHHHHHHHHh
Confidence 3345556665543
No 112
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=24.91 E-value=1.3e+02 Score=18.74 Aligned_cols=61 Identities=10% Similarity=0.040 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617 48 DLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK 108 (137)
Q Consensus 48 eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~ 108 (137)
.|.+.+.+--+.+..|...-..+++=...=+.=|+.=+.-+|.....+.++..+|+...++
T Consensus 9 ~Q~~~~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r 69 (82)
T 2nps_D 9 GGNNMGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKK 69 (82)
T ss_dssp ---------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445445444444444444444445555555555555555555555555543
No 113
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=24.83 E-value=2.5e+02 Score=21.88 Aligned_cols=43 Identities=26% Similarity=0.070 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032617 51 DEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQA 93 (137)
Q Consensus 51 ~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~ 93 (137)
...+.|...+..++..+..+.....+-....+++.........
T Consensus 45 ~~~~~l~~~i~~v~~~~~~l~~~~~~l~~~~~~~~~~~~~q~~ 87 (341)
T 3zx6_A 45 RLRRSLMRTVGDVRNGANAIYSGASEIATGNNDLSSRTEQQAA 87 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444443333333333333333333
No 114
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=24.82 E-value=83 Score=17.83 Aligned_cols=16 Identities=19% Similarity=0.428 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHHH
Q 032617 49 LDDEITGLRSQVKQLR 64 (137)
Q Consensus 49 qD~~Ld~L~~~V~~LK 64 (137)
-+++++.|..++..|.
T Consensus 21 LE~Ri~~LE~KLd~L~ 36 (43)
T 2pnv_A 21 FEKRIVTLETKLETLI 36 (43)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3666777776666554
No 115
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=24.08 E-value=1.9e+02 Score=20.31 Aligned_cols=61 Identities=13% Similarity=0.287 Sum_probs=29.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617 47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQK---DFLDQLQMTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn---~lLD~l~~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
++-...|+.|...|..|+..-..+-....... .-|+.+...+.+....++.-.+.|.+...
T Consensus 46 ~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~ 109 (180)
T 1s94_A 46 EEIRAMIDKISDNVDAVKKKHSDILSAPQTDDQMKEELEELMTDIKRTANKVRGKLKTIELNIE 109 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666655555433322222222 34555555555555566665555555443
No 116
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=24.06 E-value=16 Score=24.79 Aligned_cols=15 Identities=7% Similarity=0.346 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH
Q 032617 118 VLFALFLFFILYMWS 132 (137)
Q Consensus 118 il~~v~vffvly~l~ 132 (137)
+++++++.+++|++.
T Consensus 112 ~~~~i~i~~~~~~~~ 126 (130)
T 3fym_A 112 MGITVLITLLLWIML 126 (130)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444445555544
No 117
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=24.04 E-value=1.8e+02 Score=20.04 Aligned_cols=6 Identities=33% Similarity=0.241 Sum_probs=2.1
Q ss_pred HHHHHH
Q 032617 72 SEASFQ 77 (137)
Q Consensus 72 ~Ev~~Q 77 (137)
.++..|
T Consensus 89 ~~ik~q 94 (119)
T 3etw_A 89 AEMEQQ 94 (119)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 118
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=23.66 E-value=1e+02 Score=17.06 Aligned_cols=16 Identities=19% Similarity=0.565 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 032617 117 VVLFALFLFFILYMWS 132 (137)
Q Consensus 117 lil~~v~vffvly~l~ 132 (137)
+++..+++||+-.++.
T Consensus 6 i~Vy~vV~ffvsLFiF 21 (38)
T 3arc_I 6 ITVYIVVTFFVLLFVF 21 (38)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHc
Confidence 3444444455444443
No 119
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=22.37 E-value=2.8e+02 Score=22.12 Aligned_cols=20 Identities=20% Similarity=0.390 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032617 70 IHSEASFQKDFLDQLQMTLI 89 (137)
Q Consensus 70 I~~Ev~~Qn~lLD~l~~~~d 89 (137)
+.+.++.++.-|++|...+.
T Consensus 31 L~~~l~~~~~~i~~l~~~i~ 50 (323)
T 1lwu_C 31 LSEMWRVNQQFVTRLQQQLV 50 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433
No 120
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=21.77 E-value=1.4e+02 Score=17.81 Aligned_cols=27 Identities=7% Similarity=0.086 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 032617 70 IHSEASFQKDFLDQLQMTLIKAQAGVK 96 (137)
Q Consensus 70 I~~Ev~~Qn~lLD~l~~~~d~~~~~L~ 96 (137)
+.+-+++...++..+..++...-..+.
T Consensus 53 l~~~~~~~~~~~~~~shel~~~l~~i~ 79 (115)
T 3zrx_A 53 LKQLADDRTLLMAGVSHDLRTPLTRIR 79 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 333333333444444444443333333
No 121
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=21.64 E-value=3.1e+02 Score=21.87 Aligned_cols=67 Identities=13% Similarity=0.228 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCchhHH
Q 032617 50 DDEITGLRSQVK-----QLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMH 116 (137)
Q Consensus 50 D~~Ld~L~~~V~-----~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~~~~~~~ 116 (137)
++-++.+.+.+. ..+.+-..+.+.++.-.+-+..|..+.+++.+-+-+..+-|.-+.-..+..+.|.
T Consensus 359 eeal~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (463)
T 2xz3_A 359 DAALAAAQTNAAALSHQRLTSLIHVLEQDQQRLITAINQTHYNLLNVASVVAQNRRGLDWLYIRLGFQSLCP 430 (463)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHhCcCccch
Confidence 444555544442 2333445555556666666777777777777777777777776666655445564
No 122
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=21.47 E-value=1.8e+02 Score=18.99 Aligned_cols=58 Identities=14% Similarity=0.293 Sum_probs=27.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 032617 47 ADLDDEITGLRSQVKQLRNVAQEIHSEAS---FQKDFLDQLQMTLIKAQAGVKNNMRRLNK 104 (137)
Q Consensus 47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~---~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~ 104 (137)
++-...++.|...|..|+..-..+-.... .-..-||.+.+.+.+....++.-.+.|.+
T Consensus 15 ~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~ 75 (127)
T 1ez3_A 15 EEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQ 75 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666655444432221 11223444444444555555544444443
No 123
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=21.08 E-value=1.2e+02 Score=16.93 Aligned_cols=13 Identities=15% Similarity=0.189 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q 032617 122 LFLFFILYMWSKM 134 (137)
Q Consensus 122 v~vffvly~l~k~ 134 (137)
+++-++++.++|+
T Consensus 21 vliGl~lLliwk~ 33 (43)
T 2k9j_B 21 LLIGLAALLIWKL 33 (43)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444555554
No 124
>3ogi_B ESXO, putative ESAT-6-like protein 7; structural genomics, PSI-2, protein structure initiative; 2.55A {Mycobacterium tuberculosis} PDB: 4gzr_B
Probab=21.08 E-value=1.9e+02 Score=19.27 Aligned_cols=53 Identities=13% Similarity=0.147 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHhhhhHHHHHHHHHHHh
Q 032617 55 GLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMT---------LIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 55 ~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~---------~d~~~~~L~~t~~rl~~v~~ 107 (137)
.+...-+++.....+|.+|+..=--..|++... |+.+-.+.+.+.++|...+.
T Consensus 12 ~M~~~Ag~vd~~n~~Vq~El~rl~~~v~~iaga~W~G~Aq~sf~~lM~rwn~a~r~l~~aL~ 73 (99)
T 3ogi_B 12 AMRDMAGRFEVHAQTVEDEARRMWASAQNISGAGWSGMAEATSLDTMAQMNQAFRNIVNMLH 73 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CCCSCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555554333344444433 44444444444444444443
No 125
>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A
Probab=20.97 E-value=2.1e+02 Score=19.56 Aligned_cols=20 Identities=15% Similarity=0.290 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032617 52 EITGLRSQVKQLRNVAQEIH 71 (137)
Q Consensus 52 ~Ld~L~~~V~~LK~va~~I~ 71 (137)
..+.+....++||..+..||
T Consensus 71 D~~~l~~~aH~LKGssa~lG 90 (149)
T 1yvi_A 71 NFDKVDAYVHQLKGSSASVG 90 (149)
T ss_dssp CHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhHHHHHh
Confidence 35677888889998888876
No 126
>1r2d_A Apoptosis regulator BCL-X; monomeric, alpha-helical; 1.95A {Homo sapiens} SCOP: f.1.4.1 PDB: 2b48_A 1r2i_A 1r2h_A 1r2g_A 1r2e_A 1bxl_A 1lxl_A 1maz_A 3cva_X 1ysg_A* 1ysi_A* 1ysn_A* 2o1y_A* 2yxj_A* 3pl7_A 3qkd_A* 1g5j_A 2lp8_A* 2lpc_A
Probab=20.84 E-value=1.8e+02 Score=21.90 Aligned_cols=22 Identities=18% Similarity=0.122 Sum_probs=11.3
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHH
Q 032617 69 EIHSEASFQK-DFLDQLQMTLIK 90 (137)
Q Consensus 69 ~I~~Ev~~Qn-~lLD~l~~~~d~ 90 (137)
.|++|++... ..+.+|.+.++-
T Consensus 92 ~lgdElE~~~~~~f~~m~~qL~i 114 (218)
T 1r2d_A 92 EAGDEFELRYRRAFSDLTSQLHI 114 (218)
T ss_dssp HHHHHHHHHCCSTTHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC
Confidence 3456665432 355666655544
No 127
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=20.72 E-value=1.5e+02 Score=17.93 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032617 56 LRSQVKQLRNVAQEIHSEAS 75 (137)
Q Consensus 56 L~~~V~~LK~va~~I~~Ev~ 75 (137)
|.....++++.+..|.+++.
T Consensus 14 l~~~A~~~~~~~~~i~~~l~ 33 (93)
T 4ioe_A 14 LERIAGNFKNAAGEAQSQIN 33 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 128
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=20.55 E-value=2.1e+02 Score=19.60 Aligned_cols=59 Identities=20% Similarity=0.258 Sum_probs=40.2
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617 50 DDEITGLR-SQVKQLRNVAQEIHS------EASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK 108 (137)
Q Consensus 50 D~~Ld~L~-~~V~~LK~va~~I~~------Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~ 108 (137)
...+++|+ .-|..-|+|-.-|.. --++|.+-|..|+.....+...+..+.++-.+++++
T Consensus 56 ~~~~~ela~dli~k~kqIe~LIdsLP~~~~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~ 121 (132)
T 1ykh_B 56 SNTIDELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRH 121 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344443 233444555544432 346788899999999999999999999988888874
No 129
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=20.05 E-value=2.7e+02 Score=20.59 Aligned_cols=55 Identities=13% Similarity=0.173 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617 53 ITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 53 Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
.+.+......+......+..-.+.-...+......++.....+......+..+..
T Consensus 20 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (213)
T 3g67_A 20 VGDFQAKSDQLVSVIQDMEKISENIMEELKKSGTNVDQIVERVKEASSQIGETLE 74 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333444444444444444444444444443
Done!