Query 032617
Match_columns 137
No_of_seqs 114 out of 649
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 05:28:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032617.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032617hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wa8b1 a.25.3.1 (B:602-695) E 73.6 7.1 0.00052 23.5 8.9 56 53-108 7-70 (94)
2 d1wa8a1 a.25.3.1 (A:1-99) ESAT 71.4 8.1 0.00059 23.2 8.9 54 54-107 8-69 (99)
3 d1h7ca_ a.7.5.1 (A:) Tubulin c 45.1 27 0.0019 21.9 5.6 57 51-108 25-81 (103)
4 d3ehbb2 f.17.2.1 (B:1-107) Bac 38.6 13 0.00095 23.2 3.2 15 122-136 48-62 (107)
5 d1io1a_ e.32.1.1 (A:) Phase 1 38.6 39 0.0028 23.4 6.4 24 48-71 21-44 (395)
6 d3dtub2 f.17.2.1 (B:30-129) Ba 37.5 17 0.0012 22.2 3.6 15 122-136 42-56 (100)
7 d1fftb2 f.17.2.1 (B:27-117) Cy 35.6 1.5 0.00011 27.2 -1.9 19 118-136 27-45 (91)
8 d2axti1 f.23.37.1 (I:1-35) Pho 34.3 27 0.002 17.7 3.6 17 118-134 7-23 (35)
9 d1pq1a_ f.1.4.1 (A:) Apoptosis 32.1 66 0.0048 22.0 6.5 61 69-130 92-154 (196)
10 d1qsda_ a.7.5.1 (A:) Tubulin c 29.6 60 0.0043 20.1 6.0 55 53-108 24-79 (102)
11 d1niga_ a.25.2.1 (A:) Hypothet 29.6 54 0.0039 21.5 5.2 63 72-134 45-117 (148)
12 d1ppjd2 f.23.11.1 (D:196-241) 28.8 32 0.0024 18.4 3.4 16 117-132 13-28 (46)
13 d1ykhb1 a.252.1.1 (B:2-130) RN 27.4 62 0.0045 20.7 5.3 59 50-108 55-120 (129)
14 d2iuba2 f.17.3.1 (A:286-349) M 26.1 11 0.00077 21.3 1.0 20 113-132 41-60 (64)
15 d1s0pa_ a.192.1.1 (A:) N-termi 25.9 91 0.0066 21.0 6.4 30 55-84 8-37 (176)
16 d1rzhh2 f.23.10.1 (H:11-35) Ph 23.8 32 0.0024 16.2 2.4 7 117-123 11-17 (26)
17 d2axtt1 f.23.34.1 (T:1-30) Pho 20.8 47 0.0034 15.9 3.2 11 114-124 4-14 (30)
No 1
>d1wa8b1 a.25.3.1 (B:602-695) ESAT-6, EsxA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=73.63 E-value=7.1 Score=23.53 Aligned_cols=56 Identities=18% Similarity=0.216 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhhhhHHHHHHHHHHHhh
Q 032617 53 ITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQ--------MTLIKAQAGVKNNMRRLNKSIVK 108 (137)
Q Consensus 53 Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~--------~~~d~~~~~L~~t~~rl~~v~~~ 108 (137)
++.|.+.+..++..+..|.+++++-...++.|. +.|.....+.+..+.+|..++..
T Consensus 7 ~~~l~~~a~~i~~~~~~i~~~l~~L~~~~~~l~~~W~G~A~~af~~~~~~W~~~~~~l~~~L~~ 70 (94)
T d1wa8b1 7 FAGIEAAASAIQGNVTSIHSLLDEGKQSLTKLAAAWGGSGSEAYQGVQQKWDATATELNNALQN 70 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSCSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888889999999999999999988999884 66778888888877777777764
No 2
>d1wa8a1 a.25.3.1 (A:1-99) ESAT-6 like protein EsxB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=71.43 E-value=8.1 Score=23.24 Aligned_cols=54 Identities=7% Similarity=0.140 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhhhhHHHHHHHHHHHh
Q 032617 54 TGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQ--------MTLIKAQAGVKNNMRRLNKSIV 107 (137)
Q Consensus 54 d~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~--------~~~d~~~~~L~~t~~rl~~v~~ 107 (137)
++|.+...+++..+.+|.+.+..=+..++.|. +.|.......+..+.+|...+.
T Consensus 8 ~~l~~~A~~~~~~~~~l~~~l~~l~~~v~~l~~~W~G~A~~af~~~~~~w~~~~~~l~~~L~ 69 (99)
T d1wa8a1 8 ATLAQEAGNFERISGDLKTQIDQVESTAGSLQGQWRGAAGTAAQAAVVRFQEAANKQKQELD 69 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777788888888888887777777773 6666677777666666666665
No 3
>d1h7ca_ a.7.5.1 (A:) Tubulin chaperone cofactor A {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.08 E-value=27 Score=21.87 Aligned_cols=57 Identities=14% Similarity=0.208 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617 51 DEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK 108 (137)
Q Consensus 51 ~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~ 108 (137)
..++.-..+|..+|.=+.+- -+++.|..+|++...-+-....+|..+...|..++..
T Consensus 25 kE~~~q~~k~ek~k~~~~de-y~iKkq~~vl~Es~~mipd~~~Rl~~a~~~L~~~l~~ 81 (103)
T d1h7ca_ 25 KEAKQQEEKIEKMRAEDGEN-YDIKKQAEILQESRMMIPDCQRRLEAAYLDLQRILEN 81 (103)
T ss_dssp HHHHHHHHHHHHHHHHHCSC-THHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666544332 2688999999999999999999999999999999875
No 4
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=38.64 E-value=13 Score=23.20 Aligned_cols=15 Identities=13% Similarity=0.288 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHhc
Q 032617 122 LFLFFILYMWSKMFR 136 (137)
Q Consensus 122 v~vffvly~l~k~~~ 136 (137)
++..+++|+++|+.+
T Consensus 48 ~V~~~~~~~~~~~r~ 62 (107)
T d3ehbb2 48 FVCLLLLICIVRFNR 62 (107)
T ss_dssp HHHHHHHHHHHHSBT
T ss_pred HHHHHHHHHhhhhhc
Confidence 334466677777543
No 5
>d1io1a_ e.32.1.1 (A:) Phase 1 flagellin {Salmonella typhimurium [TaxId: 90371]}
Probab=38.61 E-value=39 Score=23.38 Aligned_cols=24 Identities=8% Similarity=0.317 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 032617 48 DLDDEITGLRSQVKQLRNVAQEIH 71 (137)
Q Consensus 48 eqD~~Ld~L~~~V~~LK~va~~I~ 71 (137)
=-|--|+++...+.|+|+++..=.
T Consensus 21 tae~al~~~~~iL~r~reLavqaa 44 (395)
T d1io1a_ 21 TTEGALNEINNNLQRVRELAVQSA 44 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 348889999999999999996533
No 6
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=37.53 E-value=17 Score=22.25 Aligned_cols=15 Identities=20% Similarity=0.414 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHhc
Q 032617 122 LFLFFILYMWSKMFR 136 (137)
Q Consensus 122 v~vffvly~l~k~~~ 136 (137)
++..+++|+++|+.+
T Consensus 42 ~V~~~l~~~~~~~r~ 56 (100)
T d3dtub2 42 FVTLLILYAVWRFHE 56 (100)
T ss_dssp HHHHHHHHHHHHHBT
T ss_pred HHHHHHHHHhhhhhc
Confidence 334456666666543
No 7
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=35.55 E-value=1.5 Score=27.24 Aligned_cols=19 Identities=5% Similarity=-0.052 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 032617 118 VLFALFLFFILYMWSKMFR 136 (137)
Q Consensus 118 il~~v~vffvly~l~k~~~ 136 (137)
++|+++..+++|+++|+.|
T Consensus 27 iv~v~V~~~~~~~~~ryR~ 45 (91)
T d1fftb2 27 IVVIPAILMAVGFAWKYRA 45 (91)
T ss_dssp TTTTHHHHHHHTTTTTTTT
T ss_pred HHHHHHHHHHHhhheeeec
Confidence 3344555667777777544
No 8
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=34.34 E-value=27 Score=17.68 Aligned_cols=17 Identities=18% Similarity=0.481 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032617 118 VLFALFLFFILYMWSKM 134 (137)
Q Consensus 118 il~~v~vffvly~l~k~ 134 (137)
++..+++||+-.++..|
T Consensus 7 ~Vy~vV~fFv~lFiFGF 23 (35)
T d2axti1 7 TVYIVVTFFVLLFVFGF 23 (35)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred ehhhHHHHHHHHHHHhh
Confidence 34444455554444433
No 9
>d1pq1a_ f.1.4.1 (A:) Apoptosis regulator Bcl-xL {Mouse (Mus musculus) [TaxId: 10090]}
Probab=32.06 E-value=66 Score=22.02 Aligned_cols=61 Identities=15% Similarity=0.107 Sum_probs=26.9
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHhhcCCchhHHHHHHHHHHHHHHHH
Q 032617 69 EIHSEASF-QKDFLDQLQMTLIKAQAGVKNNMRRL-NKSIVKHGSNHIMHVVLFALFLFFILYM 130 (137)
Q Consensus 69 ~I~~Ev~~-Qn~lLD~l~~~~d~~~~~L~~t~~rl-~~v~~~~~~~~~~~lil~~v~vffvly~ 130 (137)
.++||++. +.....+|.+.+.-+......+...+ +.+++. +.++==++.+|++...+.++.
T Consensus 92 ~~gdele~~~~~~f~~m~~qL~it~~~a~~~F~~V~~elF~d-ginWGRIVal~~F~~~la~~~ 154 (196)
T d1pq1a_ 92 EAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRD-GVNWGRIVAFFSFGGALCVES 154 (196)
T ss_dssp HHHHHHHHHHGGGGTTHHHHTTCCTTTHHHHHHHHHHHHTTT-CCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHH
Confidence 45566663 33355666655544444333333333 334443 332222344444444454443
No 10
>d1qsda_ a.7.5.1 (A:) Tubulin chaperone cofactor A {Baker's yeast (Saccharomyces cerevisiae), Rbl2p [TaxId: 4932]}
Probab=29.59 E-value=60 Score=20.12 Aligned_cols=55 Identities=13% Similarity=0.176 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617 53 ITGLRSQVKQLRN-VAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK 108 (137)
Q Consensus 53 Ld~L~~~V~~LK~-va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~ 108 (137)
+..-..+|..+|. -+.+- -+|+.|..+|++-..-+-....+|..+...|..++..
T Consensus 24 ~~~q~~kv~k~kad~~~de-y~iKkq~evL~Es~~mipd~~~RL~~a~~~L~~~l~~ 79 (102)
T d1qsda_ 24 LKDQEAHVAKLKEDKSVDP-YDLKKQEEVLDDTKRLLPTLYEKIREFKEDLEQFLKT 79 (102)
T ss_dssp HHHHHHHHHHHHHCTTSCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3344455555553 23332 3488999999999999999999999999999999875
No 11
>d1niga_ a.25.2.1 (A:) Hypothetical protein Ta1238 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=29.56 E-value=54 Score=21.47 Aligned_cols=63 Identities=14% Similarity=0.108 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh--------h--cCCchhHHHHHHHHHHHHHHHHHHHH
Q 032617 72 SEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV--------K--HGSNHIMHVVLFALFLFFILYMWSKM 134 (137)
Q Consensus 72 ~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~--------~--~~~~~~~~lil~~v~vffvly~l~k~ 134 (137)
.|.++--++||-+-+++-.-..+|+...+|=-+... + +++++..|+++..--+=.-+||+.++
T Consensus 45 ~EtrE~lDilDtv~nsLyD~es~Lnd~qeKrLn~teE~W~DIkEK~nnGnk~slYmflArsh~~~Av~~~~~m 117 (148)
T d1niga_ 45 RETREILDIIDTVYNSLSDPESKLNDFQEKRLNFTEEDWYDIKEKANNGNRWSLYMFLARSAVDSAVYWSYRM 117 (148)
T ss_dssp HHHHHHHHHHHHHHHTTTC--CCCCHHHHHHHHHCCCCCCCHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhccCchhHHhHHHHHhcCCchHHHHhHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 356666677777777777777778776655333321 1 34667777777777777888998886
No 12
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=28.77 E-value=32 Score=18.43 Aligned_cols=16 Identities=19% Similarity=0.395 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 032617 117 VVLFALFLFFILYMWS 132 (137)
Q Consensus 117 lil~~v~vffvly~l~ 132 (137)
+++|+.+++.++|+.-
T Consensus 13 v~~~l~~l~~l~yy~K 28 (46)
T d1ppjd2 13 MLLMMGLLLPLVYAMK 28 (46)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 13
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=27.43 E-value=62 Score=20.71 Aligned_cols=59 Identities=19% Similarity=0.262 Sum_probs=41.2
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617 50 DDEITGLRSQ-VKQLRNVAQEIH------SEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK 108 (137)
Q Consensus 50 D~~Ld~L~~~-V~~LK~va~~I~------~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~ 108 (137)
+....+|+.. |..-|++-.-|. .--++|.+.|..|+.....+...+..+.++-+.++++
T Consensus 55 ~~~~~elA~dii~kakqId~LI~sLP~~~~see~Q~~~i~~Le~E~~~~~~el~~~v~e~e~ll~~ 120 (129)
T d1ykhb1 55 SNTIDELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRH 120 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444433 333444544443 2346799999999999999999999999998888874
No 14
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=26.13 E-value=11 Score=21.35 Aligned_cols=20 Identities=10% Similarity=0.032 Sum_probs=8.2
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 032617 113 HIMHVVLFALFLFFILYMWS 132 (137)
Q Consensus 113 ~~~~lil~~v~vffvly~l~ 132 (137)
++++++.+.+++.+++|+++
T Consensus 41 ~~~~~~~~~~~~~~~~~~~f 60 (64)
T d2iuba2 41 GYPVVLAVMGVIAVIMVVYF 60 (64)
T ss_dssp -CHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 15
>d1s0pa_ a.192.1.1 (A:) N-terminal domain of adenylylcyclase associated protein, CAP {Dictyostelium discoideum [TaxId: 44689]}
Probab=25.93 E-value=91 Score=21.04 Aligned_cols=30 Identities=10% Similarity=0.143 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032617 55 GLRSQVKQLRNVAQEIHSEASFQKDFLDQL 84 (137)
Q Consensus 55 ~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l 84 (137)
.+.+.|..+-..+..||.+|.+|..++.+.
T Consensus 8 ~i~~~v~~~~~~s~~Igg~V~~~a~~v~~a 37 (176)
T d1s0pa_ 8 LVDQHITPFVALSKKLAPEVGNQVEQLVKA 37 (176)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 477899999999999999999999877653
No 16
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=23.85 E-value=32 Score=16.16 Aligned_cols=7 Identities=14% Similarity=0.216 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 032617 117 VVLFALF 123 (137)
Q Consensus 117 lil~~v~ 123 (137)
.++|+++
T Consensus 11 w~ffall 17 (26)
T d1rzhh2 11 WIFLAGL 17 (26)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444433
No 17
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=20.85 E-value=47 Score=15.90 Aligned_cols=11 Identities=36% Similarity=0.582 Sum_probs=4.9
Q ss_pred hHHHHHHHHHH
Q 032617 114 IMHVVLFALFL 124 (137)
Q Consensus 114 ~~~lil~~v~v 124 (137)
+.|+.+|++++
T Consensus 4 i~yv~ifac~i 14 (30)
T d2axtt1 4 ITYVFIFACII 14 (30)
T ss_dssp HHHHHHHHHHH
T ss_pred eehHHHHHHHH
Confidence 34544444443
Done!