BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032619
         (137 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2KNZ|A Chain A, Nmr Structure Of Cip75 Uba Domain
          Length = 53

 Score = 26.9 bits (58), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 98  GCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 127
           G  N E   + L+  GGD++AAIE L+  Q
Sbjct: 22  GFINREANLQALIATGGDINAAIERLLGSQ 51


>pdb|3S5O|A Chain A, Crystal Structure Of Human 4-Hydroxy-2-Oxoglutarate
           Aldolase Bound To Pyruvate
          Length = 307

 Score = 26.9 bits (58), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 3/28 (10%)

Query: 91  KLVMAGSGCENSEKVEEV---LLQVGGD 115
           +L++AGSGCE+++   E+   + QVG D
Sbjct: 84  RLLLAGSGCESTQATVEMTVSMAQVGAD 111


>pdb|3S5N|A Chain A, Crystal Structure Of Human 4-Hydroxy-2-Oxoglutarate
           Aldolase
          Length = 304

 Score = 26.9 bits (58), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 3/28 (10%)

Query: 91  KLVMAGSGCENSEKVEEV---LLQVGGD 115
           +L++AGSGCE+++   E+   + QVG D
Sbjct: 81  RLLLAGSGCESTQATVEMTVSMAQVGAD 108


>pdb|2DAH|A Chain A, Solution Structure Of The C-Terminal Uba Domain In The
           Human Ubiquilin 3
          Length = 54

 Score = 26.6 bits (57), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 13/26 (50%), Positives = 16/26 (61%)

Query: 98  GCENSEKVEEVLLQVGGDVDAAIEFL 123
           G  N E   + L+  GGDVDAA+E L
Sbjct: 20  GFLNREANLQALIATGGDVDAAVEKL 45


>pdb|3BWW|A Chain A, Crystal Structure Of A Duf692 Family Protein (Hs_1138)
           From Haemophilus Somnus 129pt At 2.20 A Resolution
          Length = 307

 Score = 26.2 bits (56), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 12  MSPRWYIRNFDYHEARMIHLSYHDGEH 38
           + P  +I N D      IH++ HD EH
Sbjct: 186 LDPHVFIDNVDLKRVNYIHIAGHDDEH 212


>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate
           Kinase Complexed With Two Molecules Of Adp And Mg
          Length = 201

 Score = 25.8 bits (55), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 10/29 (34%), Positives = 20/29 (68%)

Query: 99  CENSEKVEEVLLQVGGDVDAAIEFLIAEQ 127
            E ++ + E+L + G D+DA +EF ++E+
Sbjct: 110 VEQAKALHEMLERRGTDIDAVLEFRVSEE 138


>pdb|2JY5|A Chain A, Nmr Structure Of Ubiquilin 1 Uba Domain
 pdb|2JY6|B Chain B, Solution Structure Of The Complex Of Ubiquitin And
           Ubiquilin 1 Uba Domain
          Length = 52

 Score = 25.8 bits (55), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 94  MAGSGCENSEKVEEVLLQVGGDVDAAIEFLI 124
           ++  G  N E   + L+  GGD++AAIE L+
Sbjct: 19  LSAMGFLNREANLQALIATGGDINAAIERLL 49


>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis Adenylate
           Kinase
          Length = 181

 Score = 25.8 bits (55), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 10/29 (34%), Positives = 20/29 (68%)

Query: 99  CENSEKVEEVLLQVGGDVDAAIEFLIAEQ 127
            E ++ + E+L + G D+DA +EF ++E+
Sbjct: 90  VEQAKALHEMLERRGTDIDAVLEFRVSEE 118


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.133    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,513,927
Number of Sequences: 62578
Number of extensions: 112451
Number of successful extensions: 264
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 258
Number of HSP's gapped (non-prelim): 8
length of query: 137
length of database: 14,973,337
effective HSP length: 89
effective length of query: 48
effective length of database: 9,403,895
effective search space: 451386960
effective search space used: 451386960
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)