BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032619
(137 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5T2D3|OTUD3_HUMAN OTU domain-containing protein 3 OS=Homo sapiens GN=OTUD3 PE=1 SV=1
Length = 398
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 2 YCLLLSLMQHMSPRWYIRNFDYHEARMIHLSYHDGEHYNGVRLKEDSCIGSARPIIIKAD 61
+ L + + Q +P W IR + R +H++Y GEHY+ VR D+ S P ++ D
Sbjct: 146 HQLNVVIHQLNAPLWQIRGTEKSSVRELHIAYRYGEHYDSVRRINDN---SEAPAHLQTD 202
Query: 62 ADISAASIQSKTVTSKLKG 80
+ +K K KG
Sbjct: 203 FQMLHQDESNKREKIKTKG 221
>sp|Q9U505|AT5G_MANSE ATP synthase lipid-binding protein, mitochondrial OS=Manduca
sexta PE=2 SV=1
Length = 131
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 24 HEARMIHLSYHDGEHYNGVRLKEDSCIGSARPIIIKADADISAA-SIQSKTVTSKLKGAA 82
AR+I + N ++ + + + ++ A A +SA S Q+ +VT + AA
Sbjct: 3 SAARLIAPAARSAIFSNAAVVRPLAAVSTQTQLVPAAPAQLSAVRSFQTTSVTKDIDSAA 62
Query: 83 GIINAGSIKLVMAGSGC 99
I AG+ + +AGSG
Sbjct: 63 KFIGAGAATVGVAGSGA 79
>sp|B0TT43|AROA_SHEHH 3-phosphoshikimate 1-carboxyvinyltransferase OS=Shewanella
halifaxensis (strain HAW-EB4) GN=aroA PE=3 SV=1
Length = 426
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 81 AAGIINAGSIKLVMAGS-GCENSEKVEEVLLQVGGDVDAAIEFLIAEQG 128
AAG I G +K+ G + K +VL Q+G D++ +++IA Q
Sbjct: 252 AAGAIQGGEVKVTGVGKLSIQGDVKFADVLEQMGADIEWGDDYIIARQA 300
>sp|Q2GN26|LYS4_CHAGB Homoaconitase, mitochondrial OS=Chaetomium globosum (strain ATCC
6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970)
GN=LYS4 PE=3 SV=1
Length = 797
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 23/109 (21%)
Query: 47 DSCIGSARPIIIKADADISAA---------SIQSKTVTSKLKGAAGIINAGSIKLVMAGS 97
++CIG R ++ D ISA+ S Q+K + + ++ A ++K +AG
Sbjct: 472 NACIGLGRGLLQPGDVGISASNRNWNGRMGSPQAKAYLA----SPEVVAASALKGEIAGP 527
Query: 98 GC-ENSEKVEEVLLQVG-GDVDA--------AIEFLIAEQGTEEYSVKK 136
G E E VE+V++ G GD++A A+E L+A+ + S +K
Sbjct: 528 GWYEKPEGVEKVIIGEGTGDLEADRAVSIADALESLVAQAESMISSAEK 576
>sp|Q081U4|AROA_SHEFN 3-phosphoshikimate 1-carboxyvinyltransferase OS=Shewanella
frigidimarina (strain NCIMB 400) GN=aroA PE=3 SV=1
Length = 426
Score = 29.3 bits (64), Expect = 8.2, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 81 AAGIINAGSIKLVMAGS-GCENSEKVEEVLLQVGGDVDAAIEFLIAEQGT 129
AAG I G +K+ G + K + L Q+G D++ +++IA + T
Sbjct: 252 AAGAIKGGEVKVTGVGRLSIQGDVKFADALAQMGADIEWGDDYIIARKST 301
>sp|B8CMH2|AROA_SHEPW 3-phosphoshikimate 1-carboxyvinyltransferase OS=Shewanella
piezotolerans (strain WP3 / JCM 13877) GN=aroA PE=3 SV=1
Length = 426
Score = 29.3 bits (64), Expect = 8.3, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 81 AAGIINAGSIKLVMAGS-GCENSEKVEEVLLQVGGDVDAAIEFLIA 125
AAG I G +K+ G + K +VL Q+G D++ +++IA
Sbjct: 252 AAGAIKGGEVKVTGVGKLSIQGDVKFADVLAQMGADIEWGDDYIIA 297
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,892,747
Number of Sequences: 539616
Number of extensions: 1715091
Number of successful extensions: 5387
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 5382
Number of HSP's gapped (non-prelim): 20
length of query: 137
length of database: 191,569,459
effective HSP length: 102
effective length of query: 35
effective length of database: 136,528,627
effective search space: 4778501945
effective search space used: 4778501945
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)