Query 032619
Match_columns 137
No_of_seqs 102 out of 112
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 05:31:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032619.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032619hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3phu_A RNA-directed RNA polyme 98.9 4E-10 1.4E-14 89.9 3.6 58 1-58 113-173 (219)
2 3phx_A RNA-directed RNA polyme 98.9 6.9E-10 2.4E-14 86.2 2.8 58 1-58 113-173 (185)
3 3pfy_A OTU domain-containing p 98.7 7.8E-09 2.7E-13 80.5 2.9 45 1-45 137-182 (185)
4 3by4_A OTU1, ubiquitin thioest 98.3 5E-07 1.7E-11 71.2 4.0 41 1-44 98-139 (212)
5 1wgl_A TOLL-interacting protei 97.9 3.4E-05 1.2E-09 49.9 5.9 48 83-130 6-53 (59)
6 2dhy_A CUE domain-containing p 97.7 7.6E-05 2.6E-09 49.5 5.7 45 87-131 19-63 (67)
7 1tff_A Ubiquitin thiolesterase 97.7 1.5E-05 5.1E-10 63.5 2.6 44 2-46 187-232 (234)
8 2cp9_A EF-TS, EF-TSMT, elongat 97.6 0.00014 4.6E-09 48.0 5.4 44 83-127 6-49 (64)
9 1wj7_A Hypothetical protein (R 97.6 0.00011 3.7E-09 52.7 5.1 40 87-127 40-79 (104)
10 2bwb_A Ubiquitin-like protein 97.3 0.00045 1.5E-08 42.3 5.4 37 88-125 9-45 (46)
11 1otr_A Protein CUE2; protein-p 97.2 0.00092 3.1E-08 41.8 5.6 41 87-127 5-45 (49)
12 1wr1_B Ubiquitin-like protein 97.2 0.00078 2.7E-08 43.3 5.3 37 88-125 19-55 (58)
13 2dah_A Ubiquilin-3; UBA domain 97.1 0.00081 2.8E-08 42.5 4.7 40 87-127 10-49 (54)
14 1wji_A Tudor domain containing 97.1 0.0017 5.6E-08 42.2 6.3 45 84-130 7-51 (63)
15 1p3q_Q VPS9P, vacuolar protein 97.0 0.00022 7.5E-09 45.6 1.7 41 88-128 14-54 (54)
16 1z96_A DNA-damage, UBA-domain 97.0 0.0011 3.9E-08 38.3 4.5 36 87-124 5-40 (40)
17 1tr8_A Conserved protein (MTH1 97.0 0.00069 2.4E-08 48.1 4.0 39 84-123 63-101 (102)
18 2dak_A Ubiquitin carboxyl-term 97.0 0.0016 5.4E-08 42.0 5.3 46 81-128 4-49 (63)
19 1vej_A Riken cDNA 4931431F19; 96.9 0.0014 4.7E-08 44.2 5.1 39 87-126 30-68 (74)
20 2dna_A Unnamed protein product 96.9 0.001 3.4E-08 44.2 4.3 34 95-128 27-60 (67)
21 2knz_A Ubiquilin-4; cytoplasm, 96.9 0.0013 4.6E-08 41.1 4.6 37 89-126 14-50 (53)
22 2g3q_A Protein YBL047C; endocy 96.9 0.0023 7.9E-08 38.0 5.3 37 87-125 5-41 (43)
23 1vg5_A RSGI RUH-014, rhomboid 96.9 0.0024 8.1E-08 42.8 5.8 40 85-126 28-67 (73)
24 3e21_A HFAF1, FAS-associated f 96.7 0.0018 6E-08 39.8 4.0 36 87-122 6-41 (45)
25 1ify_A HHR23A, UV excision rep 96.7 0.0029 9.9E-08 38.9 4.7 37 87-125 9-45 (49)
26 2jy5_A Ubiquilin-1; UBA, alter 96.6 0.0022 7.5E-08 40.0 3.7 38 87-125 13-50 (52)
27 2cp8_A NEXT to BRCA1 gene 1 pr 96.6 0.0025 8.5E-08 40.7 3.9 38 93-130 15-52 (54)
28 2dam_A ETEA protein; KIAA0887, 96.5 0.0043 1.5E-07 40.6 4.8 42 87-128 19-60 (67)
29 2cwb_A Chimera of immunoglobul 96.3 0.0052 1.8E-07 44.1 4.6 37 89-126 69-105 (108)
30 1whc_A RSGI RUH-027, UBA/UBX 3 96.1 0.014 4.9E-07 37.7 5.7 43 84-128 7-50 (64)
31 1v92_A NSFL1 cofactor P47; 3-h 96.0 0.014 4.8E-07 34.6 4.9 38 87-125 6-43 (46)
32 1wiv_A UBP14, ubiquitin-specif 95.9 0.017 5.9E-07 38.3 5.5 40 85-126 28-67 (73)
33 1veg_A NEDD8 ultimate buster-1 95.8 0.019 6.6E-07 39.3 5.6 41 84-126 27-67 (83)
34 2ekk_A UBA domain from E3 ubiq 95.8 0.015 5.2E-07 35.1 4.5 40 83-125 6-45 (47)
35 2dag_A Ubiquitin carboxyl-term 95.8 0.024 8.3E-07 37.7 5.9 43 84-128 7-50 (74)
36 2dal_A Protein KIAA0794; FAS a 95.7 0.02 6.8E-07 36.7 5.0 41 87-128 16-56 (62)
37 2dai_A Ubadc1, ubiquitin assoc 95.5 0.027 9.3E-07 38.3 5.3 44 83-128 26-69 (83)
38 2cpw_A CBL-interacting protein 95.2 0.026 8.9E-07 36.5 4.4 40 85-126 18-58 (64)
39 1dv0_A DNA repair protein HHR2 95.1 0.01 3.5E-07 36.2 2.1 38 87-126 5-42 (47)
40 2crn_A Ubash3A protein; compac 94.9 0.067 2.3E-06 34.6 5.6 43 84-128 7-50 (64)
41 4ae4_A Ubiquitin-associated pr 94.5 0.04 1.4E-06 39.7 4.2 30 97-127 86-115 (118)
42 1wgn_A UBAP1, ubiquitin associ 94.2 0.059 2E-06 35.3 4.0 38 88-127 21-58 (63)
43 2dkl_A Trinucleotide repeat co 94.1 0.074 2.5E-06 36.3 4.7 39 87-127 22-60 (85)
44 2lbc_A Ubiquitin carboxyl-term 94.0 0.09 3.1E-06 37.5 5.1 41 85-127 77-117 (126)
45 1vdl_A Ubiquitin carboxyl-term 93.6 0.073 2.5E-06 36.2 3.8 41 89-129 27-67 (80)
46 2dzl_A Protein FAM100B; UBA-li 93.5 0.086 2.9E-06 34.3 3.9 40 88-128 19-58 (66)
47 1aip_C EF-TS, elongation facto 93.1 0.11 3.9E-06 40.6 4.8 37 88-125 5-41 (196)
48 1xb2_B EF-TS, elongation facto 92.8 0.12 4.2E-06 42.4 4.8 38 87-125 5-42 (291)
49 2lva_A Ubiquitin carboxyl-term 91.9 0.021 7.1E-07 42.1 0.0 39 90-128 22-60 (129)
50 1vek_A UBP14, ubiquitin-specif 92.7 0.24 8.1E-06 33.6 5.3 43 84-128 27-70 (84)
51 2ooa_A E3 ubiquitin-protein li 92.3 0.38 1.3E-05 30.3 5.5 37 88-126 13-49 (52)
52 2d9s_A CBL E3 ubiquitin protei 91.7 0.25 8.5E-06 31.3 4.2 39 87-127 10-48 (53)
53 2qsf_X RAD23, UV excision repa 90.4 0.36 1.2E-05 36.9 4.7 38 87-126 131-168 (171)
54 3k9o_A Ubiquitin-conjugating e 89.7 0.57 1.9E-05 35.8 5.4 37 87-125 164-200 (201)
55 2lbc_A Ubiquitin carboxyl-term 89.6 0.67 2.3E-05 32.9 5.4 42 85-128 2-44 (126)
56 2oo9_A E3 ubiquitin-protein li 88.2 1.5 5.1E-05 26.9 5.5 36 89-126 7-42 (46)
57 2di0_A Activating signal coint 87.3 1.4 4.7E-05 29.3 5.3 42 87-128 14-55 (71)
58 4dhi_B Ubiquitin thioesterase 86.6 0.21 7.2E-06 41.0 1.2 43 2-45 225-274 (284)
59 2juj_A E3 ubiquitin-protein li 86.0 1.7 6E-05 27.6 5.0 38 88-127 9-46 (56)
60 4ae4_A Ubiquitin-associated pr 84.0 1.2 4.1E-05 31.8 4.1 28 100-127 20-47 (118)
61 3e46_A Ubiquitin-conjugating e 81.7 2.4 8.1E-05 33.9 5.4 37 87-125 216-252 (253)
62 1oqy_A HHR23A, UV excision rep 81.7 0.7 2.4E-05 38.9 2.4 39 87-127 326-364 (368)
63 1oqy_A HHR23A, UV excision rep 81.1 0.72 2.5E-05 38.8 2.3 37 87-125 169-205 (368)
64 3bq3_A Defective in cullin ned 75.2 3.8 0.00013 33.1 4.8 42 87-129 16-57 (270)
65 3k6g_A Telomeric repeat-bindin 75.0 5.4 0.00018 28.4 5.0 39 88-127 15-53 (111)
66 4g3o_A E3 ubiquitin-protein li 72.4 7.9 0.00027 24.6 4.8 38 87-125 18-55 (58)
67 1ufz_A Hypothetical protein BA 71.2 9.1 0.00031 26.0 5.2 30 98-128 48-77 (83)
68 3e7l_A Transcriptional regulat 68.5 5.2 0.00018 24.6 3.3 23 101-123 20-42 (63)
69 1q02_A Sequestosome 1; helical 68.1 5.7 0.0002 24.9 3.4 30 94-123 17-47 (52)
70 4dbg_B Ring finger protein 31; 67.7 3.8 0.00013 31.2 3.0 34 89-123 105-138 (162)
71 3avx_A Elongation factor TS, e 67.5 0.93 3.2E-05 44.0 -0.5 39 86-125 5-43 (1289)
72 2ejs_A Autocrine motility fact 66.2 16 0.00055 23.1 5.3 40 87-127 14-53 (58)
73 2cos_A Serine/threonine protei 65.5 12 0.0004 23.6 4.5 33 97-130 19-52 (54)
74 1umq_A Photosynthetic apparatu 63.5 7.2 0.00025 25.8 3.5 23 101-123 42-64 (81)
75 2l2d_A OTU domain-containing p 53.1 28 0.00097 22.8 4.8 42 87-129 18-59 (73)
76 2ekf_A Ancient ubiquitous prot 50.4 34 0.0012 21.8 4.8 40 87-127 14-53 (61)
77 1eto_A FIS, factor for inversi 48.3 17 0.00057 24.7 3.3 23 101-123 59-81 (98)
78 2qho_B E3 ubiquitin-protein li 48.1 40 0.0014 20.9 4.7 42 87-128 10-51 (53)
79 1ntc_A Protein (nitrogen regul 44.6 12 0.00042 24.5 2.1 23 101-123 52-74 (91)
80 1oai_A Nuclear RNA export fact 44.3 55 0.0019 20.3 5.1 39 88-127 9-47 (59)
81 2ay0_A Bifunctional PUTA prote 42.1 21 0.00071 21.9 2.8 25 88-112 16-40 (58)
82 4dbg_B Ring finger protein 31; 40.4 28 0.00095 26.4 3.7 33 98-130 73-105 (162)
83 2gpe_A Bifunctional protein PU 40.2 24 0.00082 20.5 2.8 25 88-112 16-40 (52)
84 1g2h_A Transcriptional regulat 40.2 21 0.00072 21.7 2.6 22 101-123 22-43 (61)
85 1nri_A Hypothetical protein HI 40.0 9.2 0.00031 30.4 1.1 37 88-125 246-282 (306)
86 2dae_A KIAA0733 protein; mitog 38.8 84 0.0029 20.8 5.5 42 86-127 10-51 (75)
87 1v54_E Cytochrome C oxidase po 33.2 72 0.0025 22.6 4.7 44 85-128 24-73 (109)
88 2cpg_A REPA protein, transcrip 32.3 30 0.001 19.2 2.2 25 88-112 15-39 (45)
89 3ihp_A Ubiquitin carboxyl-term 28.0 53 0.0018 30.1 4.2 40 85-126 719-758 (854)
90 2jp7_A MRNA export factor MEX6 24.8 94 0.0032 19.2 3.7 38 88-126 8-45 (57)
91 2y69_E Cytochrome C oxidase su 20.6 1.5E+02 0.0052 22.0 4.7 45 84-128 66-116 (152)
No 1
>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}
Probab=98.93 E-value=4e-10 Score=89.90 Aligned_cols=58 Identities=9% Similarity=0.063 Sum_probs=46.8
Q ss_pred CcceeEEEEeCCCc--ceEEeec-cCCCceEEEEEecCCCcccccccCCCCCCCCCceeee
Q 032619 1 MYCLLLSLMQHMSP--RWYIRNF-DYHEARMIHLSYHDGEHYNGVRLKEDSCIGSARPIII 58 (137)
Q Consensus 1 ~~~~~i~Ihq~~~p--~w~I~~~-~~~~~~~lhlaYh~geHYnSVR~~~d~~~~p~~p~~i 58 (137)
+|+++|+|+|.+.+ .+.+..| +....+.|+|+|++|+||||||.+.|++.+|+.|+.|
T Consensus 113 ~~~v~I~V~~~d~~g~~~~i~~fge~~~~~~I~L~Y~g~~HYdSL~~~~d~~~~~~~~~~l 173 (219)
T 3phu_A 113 EMGITIIIWTVAASDEVEAGIKFGDGDVFTAVNLLHSGQTHFDALRILPQFETDTREALSL 173 (219)
T ss_dssp HTTCCEEEEEESSSSBEEEEEEESSCCTTTSEEEEEETTTEEEEEEECTTTCCSCCCCCCH
T ss_pred HhCCCEEEEEecCCCCceeEEEecCCCCCCeEEEEECCCcCchhheECCCCCCCCCcchhH
Confidence 48999999998776 3333334 3334689999999999999999999999999999864
No 2
>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A
Probab=98.87 E-value=6.9e-10 Score=86.15 Aligned_cols=58 Identities=9% Similarity=0.073 Sum_probs=37.5
Q ss_pred CcceeEEEEeCCCcc--eEEeec-cCCCceEEEEEecCCCcccccccCCCCCCCCCceeee
Q 032619 1 MYCLLLSLMQHMSPR--WYIRNF-DYHEARMIHLSYHDGEHYNGVRLKEDSCIGSARPIII 58 (137)
Q Consensus 1 ~~~~~i~Ihq~~~p~--w~I~~~-~~~~~~~lhlaYh~geHYnSVR~~~d~~~~p~~p~~i 58 (137)
+|+++|+|+|.+.+. +.|..| +....++|+|+|++|+||||||.+.|+++.++.|+.|
T Consensus 113 ~~~v~I~V~~~d~~~~~~~i~~f~~~~~~~~I~L~Y~g~~HYdsl~~~~~~~~~~~~~~~~ 173 (185)
T 3phx_A 113 EMGITIIIWTVAASDEVEAGIKFGDGDVFTAVNLLHSGQTHFDALRILPQFETDTREALSL 173 (185)
T ss_dssp HHCCCEEEEEC--CCBCCEEEEESSCCTTTSEEEEEETTTEEEEEEECGGGC---------
T ss_pred HHCCcEEEEEecCCCCceEEEEcCCCCCCCEEEEEECCCcCchhceECCCCCCCCcccccH
Confidence 489999999987664 333334 3333689999999999999999999999988877754
No 3
>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*
Probab=98.67 E-value=7.8e-09 Score=80.45 Aligned_cols=45 Identities=27% Similarity=0.332 Sum_probs=35.7
Q ss_pred CcceeEEEEeCCCcce-EEeeccCCCceEEEEEecCCCcccccccC
Q 032619 1 MYCLLLSLMQHMSPRW-YIRNFDYHEARMIHLSYHDGEHYNGVRLK 45 (137)
Q Consensus 1 ~~~~~i~Ihq~~~p~w-~I~~~~~~~~~~lhlaYh~geHYnSVR~~ 45 (137)
+|+++|+|+|.+.+++ .+.+.+....+.|+|+||.++||||||.-
T Consensus 137 ~~~v~I~V~~~~~~~i~i~~g~~~~~~~~I~L~Y~~~~HYnSv~~p 182 (185)
T 3pfy_A 137 MYNRPVEVYQYSTEPINTFHGIHQNEDEPIRVSYHRNIHYNSVVNP 182 (185)
T ss_dssp HHTSCEEEESSCSSCSEEECTTSCCTTSCEEEEEETTTEEEEEECC
T ss_pred hhCCcEEEEECCCCCeEEecCccCCCCCEEEEEECCCCCcccccCC
Confidence 4899999999887544 44444444568999999999999999873
No 4
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A
Probab=98.28 E-value=5e-07 Score=71.18 Aligned_cols=41 Identities=12% Similarity=0.201 Sum_probs=32.1
Q ss_pred CcceeEEEEeCC-CcceEEeeccCCCceEEEEEecCCCccccccc
Q 032619 1 MYCLLLSLMQHM-SPRWYIRNFDYHEARMIHLSYHDGEHYNGVRL 44 (137)
Q Consensus 1 ~~~~~i~Ihq~~-~p~w~I~~~~~~~~~~lhlaYh~geHYnSVR~ 44 (137)
+|+++|+|+|.+ .|.+.|.. +. ..+.|+|+|| |+|||||+.
T Consensus 98 ~~~~~I~V~~~~~~~~~~~~~-~~-~~~~I~L~Y~-g~HYdsl~~ 139 (212)
T 3by4_A 98 ALAVAIYVVDIDAVKIEKFNE-DK-FDNYILILFN-GIHYDSLTM 139 (212)
T ss_dssp HHTCEEEEEETTTTEEEEEST-TT-CSEEEEEEEC-SSCEEEEEE
T ss_pred HHCCCEEEEECCCCCeEEeCC-CC-CCCeEEEEEc-CCcceEEec
Confidence 489999999976 45455432 22 4688999999 899999999
No 5
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=97.86 E-value=3.4e-05 Score=49.94 Aligned_cols=48 Identities=21% Similarity=0.149 Sum_probs=41.8
Q ss_pred CCCChhHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhccc
Q 032619 83 GIINAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGTE 130 (137)
Q Consensus 83 ~~~~~~~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~~~~~~ 130 (137)
....+..++....-..--|.+.|+.+|++++||+|+||+.||.+....
T Consensus 6 ~~~~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~ 53 (59)
T 1wgl_A 6 SGCSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEP 53 (59)
T ss_dssp SSSCHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCCC
T ss_pred CCCCHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcCCC
Confidence 344567888888888889999999999999999999999999988654
No 6
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.70 E-value=7.6e-05 Score=49.54 Aligned_cols=45 Identities=20% Similarity=0.120 Sum_probs=40.3
Q ss_pred hhHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhcccc
Q 032619 87 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGTEE 131 (137)
Q Consensus 87 ~~~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~~~~~~~ 131 (137)
+..++.+..-..=-|.+.|+.+|++++||+|+||+.||.+.....
T Consensus 19 ~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ms~~~~ 63 (67)
T 2dhy_A 19 NQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQMNLESG 63 (67)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcCCCCC
Confidence 567888888889899999999999999999999999999986554
No 7
>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11
Probab=97.69 E-value=1.5e-05 Score=63.55 Aligned_cols=44 Identities=16% Similarity=0.143 Sum_probs=31.1
Q ss_pred cceeEEEEeCCCcceEEe--eccCCCceEEEEEecCCCcccccccCC
Q 032619 2 YCLLLSLMQHMSPRWYIR--NFDYHEARMIHLSYHDGEHYNGVRLKE 46 (137)
Q Consensus 2 ~~~~i~Ihq~~~p~w~I~--~~~~~~~~~lhlaYh~geHYnSVR~~~ 46 (137)
++++|.|+|++++...+. .++++..++|||.|+.| |||+|....
T Consensus 187 L~v~I~V~~~d~~~~~~~~~~~~~~~~~~I~LlY~pg-HYdily~~~ 232 (234)
T 1tff_A 187 LSIALQVEYVDEMDTALNHHVFPEAATPSVYLLYKTS-HYNILYAAD 232 (234)
T ss_dssp HTCCEEEEECC-------CCCCCCCSSCSEEEEEETT-EEEEEEECC
T ss_pred hCCCEEEEEcCCCCCccccccCCCCCCCeEEEEECCC-CceecccCC
Confidence 689999999988864443 35556778999999987 999998753
No 8
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=97.57 E-value=0.00014 Score=48.01 Aligned_cols=44 Identities=18% Similarity=0.172 Sum_probs=38.6
Q ss_pred CCCChhHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 032619 83 GIINAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 127 (137)
Q Consensus 83 ~~~~~~~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~~~ 127 (137)
..+....|+++...||.. +.-.+++|++++||++.||++|..-.
T Consensus 6 ~~it~~~Vk~LRe~TGag-~~dcKkAL~e~~GDi~~Ai~~Lr~kg 49 (64)
T 2cp9_A 6 SGSSKELLMKLRRKTGYS-FVNCKKALETCGGDLKQAEIWLHKEA 49 (64)
T ss_dssp SCCCCHHHHHHHHHHCCC-HHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhCCC-HHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 455677899999999987 88899999999999999999997543
No 9
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.55 E-value=0.00011 Score=52.75 Aligned_cols=40 Identities=23% Similarity=0.361 Sum_probs=36.4
Q ss_pred hhHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 032619 87 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 127 (137)
Q Consensus 87 ~~~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~~~ 127 (137)
++.|+.||.-|||+ .+.++.+|.+|+||++.||.+|+.-.
T Consensus 40 eekVk~L~EmtG~s-eeeAr~AL~~~ngDl~~AI~~Lleg~ 79 (104)
T 1wj7_A 40 EEKVKQLIDITGKN-QDECVIALHDCNGDVNRAINVLLEGN 79 (104)
T ss_dssp HHHHHHHHHHTCCC-HHHHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred HHHHHHHHHhhCCC-HHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 46899999999998 78899999999999999999999654
No 10
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=97.34 E-value=0.00045 Score=42.32 Aligned_cols=37 Identities=19% Similarity=0.327 Sum_probs=31.2
Q ss_pred hHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 032619 88 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 125 (137)
Q Consensus 88 ~~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~ 125 (137)
..++.++ .-|.+|.+.++++|..++||++.||++|+.
T Consensus 9 ~~i~~L~-~MGF~d~~~~~~AL~~~~gnv~~Ave~L~~ 45 (46)
T 2bwb_A 9 HQLRQLN-DMGFFDFDRNVAALRRSGGSVQGALDSLLN 45 (46)
T ss_dssp HHHHHHH-HTTCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHH-HcCCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 3555555 459899999999999999999999999983
No 11
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=97.18 E-value=0.00092 Score=41.79 Aligned_cols=41 Identities=22% Similarity=0.332 Sum_probs=35.3
Q ss_pred hhHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 032619 87 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 127 (137)
Q Consensus 87 ~~~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~~~ 127 (137)
++.++..+.-..=.+...|+.+|..++||+|.||..||.+.
T Consensus 5 e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~~ 45 (49)
T 1otr_A 5 ESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKEN 45 (49)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence 34567777777777899999999999999999999999994
No 12
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=97.16 E-value=0.00078 Score=43.30 Aligned_cols=37 Identities=19% Similarity=0.323 Sum_probs=31.6
Q ss_pred hHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 032619 88 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 125 (137)
Q Consensus 88 ~~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~ 125 (137)
..+++++. -|.+|.+.++++|..++||++.||++|+.
T Consensus 19 ~qi~~L~~-MGF~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 19 HQLRQLND-MGFFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHHHHHHH-HTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 35655554 58899999999999999999999999986
No 13
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.08 E-value=0.00081 Score=42.52 Aligned_cols=40 Identities=33% Similarity=0.396 Sum_probs=33.1
Q ss_pred hhHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 032619 87 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 127 (137)
Q Consensus 87 ~~~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~~~ 127 (137)
+..+++.+ .-|.+|.+.++++|..++|||+.||++|+...
T Consensus 10 ~~~l~~L~-~MGF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~ 49 (54)
T 2dah_A 10 QVQLEQLR-SMGFLNREANLQALIATGGDVDAAVEKLRQSS 49 (54)
T ss_dssp HHHHHHHH-HHTCCCHHHHHHHHHHHTSCHHHHHHHHHHHS
T ss_pred HHHHHHHH-HcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 33565555 45999999999999999999999999999754
No 14
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.08 E-value=0.0017 Score=42.23 Aligned_cols=45 Identities=18% Similarity=0.374 Sum_probs=36.7
Q ss_pred CCChhHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhccc
Q 032619 84 IINAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGTE 130 (137)
Q Consensus 84 ~~~~~~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~~~~~~ 130 (137)
.+++.+|+.++. -| .+.+.++++|..++||++.|+++|+.-....
T Consensus 7 ~~~~~~I~~L~~-MG-F~~~~a~~AL~~~~~nve~A~e~L~~~~~~~ 51 (63)
T 1wji_A 7 GVDEKALKHITE-MG-FSKEASRQALMDNGNNLEAALNVLLTSNKQK 51 (63)
T ss_dssp SSCHHHHHHHHT-TT-CCHHHHHHHHHHTTSCHHHHHHHHHHHSSCC
T ss_pred CCCHHHHHHHHH-cC-CCHHHHHHHHHHhCCCHHHHHHHHHHCCCCc
Confidence 466778888775 56 4688899999999999999999999865433
No 15
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=97.03 E-value=0.00022 Score=45.62 Aligned_cols=41 Identities=7% Similarity=0.153 Sum_probs=27.9
Q ss_pred hHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhc
Q 032619 88 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQG 128 (137)
Q Consensus 88 ~~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~~~~ 128 (137)
..++.+..=.+=-|.+.|+.+|+.++|++|+||++||++.+
T Consensus 14 ~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLqms~ 54 (54)
T 1p3q_Q 14 DTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLSLSE 54 (54)
T ss_dssp HHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC-------
T ss_pred HHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHHhhcC
Confidence 45666777777789999999999999999999999999863
No 16
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=97.00 E-value=0.0011 Score=38.31 Aligned_cols=36 Identities=25% Similarity=0.424 Sum_probs=30.5
Q ss_pred hhHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHH
Q 032619 87 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLI 124 (137)
Q Consensus 87 ~~~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll 124 (137)
++.|+++|.- |. +.+.++++|..++||++.|+++|+
T Consensus 5 ~~~i~~L~~m-Gf-~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 5 NSKIAQLVSM-GF-DPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp HHHHHHHHHT-TC-CHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred HHHHHHHHHc-CC-CHHHHHHHHHHcCCCHHHHHHHHC
Confidence 4578888876 65 578899999999999999999984
No 17
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=96.97 E-value=0.00069 Score=48.12 Aligned_cols=39 Identities=36% Similarity=0.501 Sum_probs=35.0
Q ss_pred CCChhHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHH
Q 032619 84 IINAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFL 123 (137)
Q Consensus 84 ~~~~~~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~L 123 (137)
.+++..|..||..+||+ .+..+++|++++||+-.||.+|
T Consensus 63 ~i~~edi~lv~~q~~vs-~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 63 EIPEDDIELVMNQTGAS-REDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp CCCHHHHHHHHHHHCCC-HHHHHHHHHHTTTCHHHHHHHC
T ss_pred CCCHHHHHHHHHHhCCC-HHHHHHHHHHcCCCHHHHHHHh
Confidence 46677899999999998 7888899999999999999876
No 18
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.95 E-value=0.0016 Score=41.98 Aligned_cols=46 Identities=7% Similarity=0.233 Sum_probs=38.0
Q ss_pred CCCCCChhHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhc
Q 032619 81 AAGIINAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQG 128 (137)
Q Consensus 81 ~~~~~~~~~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~~~~ 128 (137)
++..+++..++++|. -|. +.+.++.+|+.++||++.|+++|+.-..
T Consensus 4 ~~~~~~~~~v~~L~~-MGF-~~~~a~~AL~~t~~nve~A~e~L~~~~~ 49 (63)
T 2dak_A 4 GSSGPPEDCVTTIVS-MGF-SRDQALKALRATNNSLERAVDWIFSHID 49 (63)
T ss_dssp CSCCCCHHHHHHHHH-HTC-CHHHHHHHHHHTTSCSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHH-cCC-CHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 345677888888887 575 5899999999999999999999998543
No 19
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=96.95 E-value=0.0014 Score=44.19 Aligned_cols=39 Identities=28% Similarity=0.439 Sum_probs=33.1
Q ss_pred hhHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHH
Q 032619 87 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE 126 (137)
Q Consensus 87 ~~~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~~ 126 (137)
+..+++++. -|..|.+.++++|+..+||++.||++|+.-
T Consensus 30 e~qi~qL~e-MGF~dr~~~~~AL~~t~Gnve~Ave~L~~~ 68 (74)
T 1vej_A 30 QQELEELKA-LGFANRDANLQALVATDGDIHAAIEMLLGA 68 (74)
T ss_dssp HHHHHHHHH-HTCCCHHHHHHHHHHTTSCHHHHHHHHHTC
T ss_pred HHHHHHHHH-cCCCcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 446666664 588999999999999999999999999964
No 20
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=96.92 E-value=0.001 Score=44.16 Aligned_cols=34 Identities=32% Similarity=0.369 Sum_probs=30.2
Q ss_pred hcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhc
Q 032619 95 AGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQG 128 (137)
Q Consensus 95 ~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~~~~ 128 (137)
..-|-+|.+.+.++|+.++|||+.||++|+.-..
T Consensus 27 ~~MGF~d~~an~~AL~at~Gnve~Ave~L~~~~~ 60 (67)
T 2dna_A 27 QAMGFVNYNANLQALIATDGDTNAAIYKLKSSQG 60 (67)
T ss_dssp HHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHCCS
T ss_pred HHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 3568899999999999999999999999998644
No 21
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=96.92 E-value=0.0013 Score=41.11 Aligned_cols=37 Identities=32% Similarity=0.491 Sum_probs=31.4
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHH
Q 032619 89 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE 126 (137)
Q Consensus 89 ~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~~ 126 (137)
.++..+ .-|..|.+.++.+|..++||++.||++|+.-
T Consensus 14 ~l~~L~-~MGF~~~~~~~~AL~~t~gnve~Ave~L~~~ 50 (53)
T 2knz_A 14 QLEQLN-SMGFINREANLQALIATGGDINAAIERLLGS 50 (53)
T ss_dssp HHHHHH-TTTCCCHHHHHHHHHHHTSCHHHHHHHHHHC
T ss_pred HHHHHH-HcCCCCHHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 455544 4688899999999999999999999999863
No 22
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=96.89 E-value=0.0023 Score=37.99 Aligned_cols=37 Identities=22% Similarity=0.320 Sum_probs=30.6
Q ss_pred hhHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 032619 87 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 125 (137)
Q Consensus 87 ~~~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~ 125 (137)
+..|++.+. -| .+.+.++++|..++||++.|+++|+.
T Consensus 5 e~~i~~L~~-MG-F~~~~a~~AL~~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 5 SLAVEELSG-MG-FTEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHHT-TT-SCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHH-cC-CCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence 446777665 56 56899999999999999999999984
No 23
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=96.88 E-value=0.0024 Score=42.84 Aligned_cols=40 Identities=25% Similarity=0.397 Sum_probs=34.0
Q ss_pred CChhHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHH
Q 032619 85 INAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE 126 (137)
Q Consensus 85 ~~~~~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~~ 126 (137)
..++.|+++|. -| .+.+.++.+|+.++||++.|+++|+.-
T Consensus 28 ~~ee~I~~L~e-MG-F~r~~a~~AL~~~~~nve~Ave~Ll~~ 67 (73)
T 1vg5_A 28 ASEEQIQKLVA-MG-FDRTQVEVALAAADDDLTVAVEILMSQ 67 (73)
T ss_dssp CCHHHHHHHHT-TT-CCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred ccHHHHHHHHH-cC-CCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 34668888776 57 679999999999999999999999963
No 24
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=96.74 E-value=0.0018 Score=39.82 Aligned_cols=36 Identities=28% Similarity=0.135 Sum_probs=33.2
Q ss_pred hhHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHH
Q 032619 87 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEF 122 (137)
Q Consensus 87 ~~~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~ 122 (137)
++.+...++-||+.|.+..++.|+.++.|+++|+..
T Consensus 6 de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~ 41 (45)
T 3e21_A 6 EMILADFQACTGIENIDEAITLLEQNNWDLVAAING 41 (45)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTT
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 568999999999999999999999999999999853
No 25
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.66 E-value=0.0029 Score=38.93 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=30.9
Q ss_pred hhHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 032619 87 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 125 (137)
Q Consensus 87 ~~~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~ 125 (137)
++.|+.+|. -|. +.+.++.+|+.++||++.|+++|+.
T Consensus 9 ~~~i~~L~~-MGF-~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 9 ETMLTEIMS-MGY-ERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHH-TTC-CHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred HHHHHHHHH-cCC-CHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 456666654 464 7999999999999999999999986
No 26
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=96.58 E-value=0.0022 Score=40.01 Aligned_cols=38 Identities=32% Similarity=0.473 Sum_probs=32.0
Q ss_pred hhHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 032619 87 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 125 (137)
Q Consensus 87 ~~~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~ 125 (137)
+..+++++ .-|.+|.+.++++|..++||++.||++|+.
T Consensus 13 ~~~l~~L~-~MGF~~~~~~~~AL~~t~gn~e~A~e~L~~ 50 (52)
T 2jy5_A 13 QQQLEQLS-AMGFLNREANLQALIATGGDINAAIERLLG 50 (52)
T ss_dssp HHHHHHHH-HTTCCCHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHH-HcCCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 34566655 468889999999999999999999999974
No 27
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.56 E-value=0.0025 Score=40.67 Aligned_cols=38 Identities=11% Similarity=0.063 Sum_probs=33.9
Q ss_pred HHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhccc
Q 032619 93 VMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGTE 130 (137)
Q Consensus 93 Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~~~~~~ 130 (137)
....-|-.|.++-.++|..++||+++||+.|++....+
T Consensus 15 ~L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll~~~~~~ 52 (54)
T 2cp8_A 15 HLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQLSGPS 52 (54)
T ss_dssp HHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHHHHSSSC
T ss_pred HHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhccCCC
Confidence 45567999999999999999999999999999987665
No 28
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.47 E-value=0.0043 Score=40.63 Aligned_cols=42 Identities=19% Similarity=0.206 Sum_probs=37.9
Q ss_pred hhHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhc
Q 032619 87 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQG 128 (137)
Q Consensus 87 ~~~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~~~~ 128 (137)
.+.+.+.|.-|||.|....++.|+.+++|++.||...+....
T Consensus 19 ~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~~~~ 60 (67)
T 2dam_A 19 TEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQE 60 (67)
T ss_dssp HHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 458999999999889999999999999999999998887543
No 29
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=96.26 E-value=0.0052 Score=44.09 Aligned_cols=37 Identities=27% Similarity=0.493 Sum_probs=31.5
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHH
Q 032619 89 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE 126 (137)
Q Consensus 89 ~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~~ 126 (137)
.+++ +..-|-.|.++++++|..++||++.||++|+.-
T Consensus 69 qL~q-L~eMGF~d~~~ni~AL~~t~Gdve~AVe~L~~~ 105 (108)
T 2cwb_A 69 QLQQ-LRDMGIQDDELSLRALQATGGDIQAALELIFAG 105 (108)
T ss_dssp HHHH-HHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHH-HHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 4433 456788999999999999999999999999964
No 30
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=96.10 E-value=0.014 Score=37.67 Aligned_cols=43 Identities=14% Similarity=0.312 Sum_probs=34.9
Q ss_pred CCChhHHHHHHhcCCCCCHHHHHHHHHHh-CCCHHHHHHHHHHHhc
Q 032619 84 IINAGSIKLVMAGSGCENSEKVEEVLLQV-GGDVDAAIEFLIAEQG 128 (137)
Q Consensus 84 ~~~~~~v~~Vm~~TGc~D~~lIre~L~~~-~gdvdaAI~~Ll~~~~ 128 (137)
.+++..|+++|. -|.. ...++.+|..+ ++|++.|+++|+.-..
T Consensus 7 ~~~~~~v~~L~~-MGF~-~~~a~~AL~~t~~~nve~A~ewLl~~~~ 50 (64)
T 1whc_A 7 GAELTALESLIE-MGFP-RGRAEKALALTGNQGIEAAMDWLMEHED 50 (64)
T ss_dssp CCCCCHHHHHHT-TTCC-HHHHHHHHHHHTSCCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHH-cCCC-HHHHHHHHHHhcCCCHHHHHHHHHhCCC
Confidence 455678888876 5654 79999999999 6999999999998543
No 31
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=95.97 E-value=0.014 Score=34.63 Aligned_cols=38 Identities=16% Similarity=0.271 Sum_probs=33.5
Q ss_pred hhHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 032619 87 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 125 (137)
Q Consensus 87 ~~~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~ 125 (137)
.+.+.+.|.-||| +....++.|+.+++|++.||.....
T Consensus 6 ~~~i~~F~~iTg~-~~~~A~~~L~~~~wdle~Ai~~ff~ 43 (46)
T 1v92_A 6 QDALREFVAVTGA-EEDRARFFLESAGWDLQIALASFYE 43 (46)
T ss_dssp HHHHHHHHHHTCC-CHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHHhCc-CHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 3579999999999 5899999999999999999987654
No 32
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=95.91 E-value=0.017 Score=38.31 Aligned_cols=40 Identities=20% Similarity=0.457 Sum_probs=33.4
Q ss_pred CChhHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHH
Q 032619 85 INAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE 126 (137)
Q Consensus 85 ~~~~~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~~ 126 (137)
+++..|+.++. -| .+...++++|..++||++.|+++|+.-
T Consensus 28 ~~~~~v~~L~~-MG-F~~~~a~~AL~~t~~nve~Ave~L~~~ 67 (73)
T 1wiv_A 28 IDQSSVDTLLS-FG-FAEDVARKALKASGGDIEKATDWVFNN 67 (73)
T ss_dssp SCHHHHHHHHH-HT-CCHHHHHHHHHHTTSCHHHHHHHHHHS
T ss_pred CCHHHHHHHHH-cC-CCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 45677877775 46 469999999999999999999999973
No 33
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=95.83 E-value=0.019 Score=39.34 Aligned_cols=41 Identities=24% Similarity=0.229 Sum_probs=34.5
Q ss_pred CCChhHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHH
Q 032619 84 IINAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE 126 (137)
Q Consensus 84 ~~~~~~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~~ 126 (137)
..+++.|+++|.- | .+...++.+|+.++||++.|+++|+.-
T Consensus 27 ~~~ee~I~~Lv~M-G-F~~~~A~~AL~~t~gdve~A~e~L~sh 67 (83)
T 1veg_A 27 SPSQESINQLVYM-G-FDTVVAEAALRVFGGNVQLAAQTLAHH 67 (83)
T ss_dssp CCCHHHHHHHHHH-S-CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHc-C-CCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 3457788888763 6 579999999999999999999999983
No 34
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.78 E-value=0.015 Score=35.06 Aligned_cols=40 Identities=25% Similarity=0.435 Sum_probs=32.1
Q ss_pred CCCChhHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 032619 83 GIINAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 125 (137)
Q Consensus 83 ~~~~~~~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~ 125 (137)
...++..++++|. -|. +.+.++.+|..+ ||++.|+++|+.
T Consensus 6 ~~~~~~~v~~L~~-MGF-~~~~a~~AL~~~-~n~e~A~~~L~~ 45 (47)
T 2ekk_A 6 SGVNQQQLQQLMD-MGF-TREHAMEALLNT-STMEQATEYLLT 45 (47)
T ss_dssp CSSCHHHHHHHHH-HHC-CHHHHHHHHHHS-CSHHHHHHHHHT
T ss_pred CCCCHHHHHHHHH-cCC-CHHHHHHHHHHc-CCHHHHHHHHHc
Confidence 3456778888776 465 469999999999 599999999984
No 35
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.77 E-value=0.024 Score=37.66 Aligned_cols=43 Identities=12% Similarity=0.284 Sum_probs=35.7
Q ss_pred CCChhHHHHHHhcCCCCCHHHHHHHHHHhCC-CHHHHHHHHHHHhc
Q 032619 84 IINAGSIKLVMAGSGCENSEKVEEVLLQVGG-DVDAAIEFLIAEQG 128 (137)
Q Consensus 84 ~~~~~~v~~Vm~~TGc~D~~lIre~L~~~~g-dvdaAI~~Ll~~~~ 128 (137)
.+++..++++|. -|. +.+.++++|..++| |++.|+++|+.-..
T Consensus 7 ~~~e~~v~~L~~-MGF-~~~~a~~AL~~t~n~~ve~A~ewL~~~~~ 50 (74)
T 2dag_A 7 GLDESVIIQLVE-MGF-PMDACRKAVYYTGNSGAEAAMNWVMSHMD 50 (74)
T ss_dssp SSCHHHHHHHHH-HSC-CHHHHHHHHHHHTSCCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHH-cCC-CHHHHHHHHHHhCCCCHHHHHHHHHhCCC
Confidence 456778888887 565 58999999999997 89999999998554
No 36
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.71 E-value=0.02 Score=36.74 Aligned_cols=41 Identities=15% Similarity=0.287 Sum_probs=36.1
Q ss_pred hhHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhc
Q 032619 87 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQG 128 (137)
Q Consensus 87 ~~~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~~~~ 128 (137)
.+.|.+.|.-|||. ....++.|+.+++|++.||...+....
T Consensus 16 ~e~i~qF~~iTg~~-~~~A~~~Le~~~WnLe~Av~~ff~~~~ 56 (62)
T 2dal_A 16 KGLIQQFTTITGAS-ESVGKHMLEACNNNLEMAVTMFLDGGG 56 (62)
T ss_dssp HHHHHHHHHHTCCC-HHHHHHHHHTTTSCHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhCCC-HHHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence 46899999999997 888999999999999999998876543
No 37
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.47 E-value=0.027 Score=38.33 Aligned_cols=44 Identities=16% Similarity=0.256 Sum_probs=36.4
Q ss_pred CCCChhHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhc
Q 032619 83 GIINAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQG 128 (137)
Q Consensus 83 ~~~~~~~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~~~~ 128 (137)
..+++..++++|. -|. +...++++|..++||++.|+++|+.-..
T Consensus 26 ~~~~e~~i~~L~~-MGF-~~~~a~~AL~~t~~nve~A~ewL~~~~~ 69 (83)
T 2dai_A 26 ERVDEAALRQLTE-MGF-PENRATKALQLNHMSVPQAMEWLIEHAE 69 (83)
T ss_dssp SSCCHHHHHHHHH-HTC-CHHHHHHHHHHTTSCHHHHHHHHHHGGG
T ss_pred CCCCHHHHHHHHH-cCC-CHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 3467788888886 565 5799999999999999999999997543
No 38
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.25 E-value=0.026 Score=36.48 Aligned_cols=40 Identities=18% Similarity=0.473 Sum_probs=33.1
Q ss_pred CChhHHHHHHhcCCCCCHHHHHHHHHHhCC-CHHHHHHHHHHH
Q 032619 85 INAGSIKLVMAGSGCENSEKVEEVLLQVGG-DVDAAIEFLIAE 126 (137)
Q Consensus 85 ~~~~~v~~Vm~~TGc~D~~lIre~L~~~~g-dvdaAI~~Ll~~ 126 (137)
.++..|+++|. -|. +.+.++++|..++| |++.|+++|+.-
T Consensus 18 ~~e~~i~~L~~-MGF-~~~~a~~AL~~t~~~nve~A~ewL~~~ 58 (64)
T 2cpw_A 18 KHGSALDVLLS-MGF-PRARAQKALASTGGRSVQTACDWLFSH 58 (64)
T ss_dssp SCCCHHHHHHH-HTC-CHHHHHHHHHHTTTSCHHHHHHHHHSC
T ss_pred CCHHHHHHHHH-cCC-CHHHHHHHHHHcCCCCHHHHHHHHHhC
Confidence 45667888776 465 57999999999998 999999999863
No 39
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=95.10 E-value=0.01 Score=36.22 Aligned_cols=38 Identities=18% Similarity=0.234 Sum_probs=29.9
Q ss_pred hhHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHH
Q 032619 87 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE 126 (137)
Q Consensus 87 ~~~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~~ 126 (137)
+++|+.++. -| .+..+++++|.+|++|++.|..+|+.-
T Consensus 5 ~eaI~rL~~-mG-F~~~~a~~Al~a~~~n~e~A~~~Lf~~ 42 (47)
T 1dv0_A 5 KEAIERLKA-LG-FPESLVIQAYFACEKNENLAANFLLSQ 42 (47)
T ss_dssp HHHHTTTTT-TT-CCHHHHHHHHTTTTSCHHHHHHHTTSC
T ss_pred HHHHHHHHH-cC-CCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 445655543 24 678999999999999999999999853
No 40
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.89 E-value=0.067 Score=34.57 Aligned_cols=43 Identities=14% Similarity=0.158 Sum_probs=34.7
Q ss_pred CCChhHHHHHHhcCCCCCHHHHHHHHHHhCC-CHHHHHHHHHHHhc
Q 032619 84 IINAGSIKLVMAGSGCENSEKVEEVLLQVGG-DVDAAIEFLIAEQG 128 (137)
Q Consensus 84 ~~~~~~v~~Vm~~TGc~D~~lIre~L~~~~g-dvdaAI~~Ll~~~~ 128 (137)
..++..+++.+. -| .+.+.++++|..+++ |++.|+++|+.-..
T Consensus 7 ~~~e~~v~~L~~-MG-F~~~~a~~AL~~t~n~~~e~A~~wL~~h~~ 50 (64)
T 2crn_A 7 GSSPSLLEPLLA-MG-FPVHTALKALAATGRKTAEEALAWLHDHCN 50 (64)
T ss_dssp CCSCSSHHHHHH-TS-CCHHHHHHHHHHHTSCCHHHHHHHHHHHSS
T ss_pred CCCHHHHHHHHH-cC-CCHHHHHHHHHHhCCCCHHHHHHHHHhCCC
Confidence 345667877776 56 457999999999987 99999999998654
No 41
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=94.47 E-value=0.04 Score=39.67 Aligned_cols=30 Identities=37% Similarity=0.438 Sum_probs=26.5
Q ss_pred CCCCCHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 032619 97 SGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 127 (137)
Q Consensus 97 TGc~D~~lIre~L~~~~gdvdaAI~~Ll~~~ 127 (137)
-| .+.++|+++|..++||+|.|+++|+.-.
T Consensus 86 MG-F~~~~a~~AL~~~~nd~erAlewL~~~~ 115 (118)
T 4ae4_A 86 MG-FELKDIKEVLLLHNNDQDNALEDLMARA 115 (118)
T ss_dssp TT-CCHHHHHHHHHHTTTCHHHHHHHHHHHC
T ss_pred cC-CCHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 35 5799999999999999999999998754
No 42
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.15 E-value=0.059 Score=35.26 Aligned_cols=38 Identities=18% Similarity=0.377 Sum_probs=29.8
Q ss_pred hHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 032619 88 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 127 (137)
Q Consensus 88 ~~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~~~ 127 (137)
..|..++ +-| ...+.++.+|++++||||.|+|+|+.-.
T Consensus 21 e~V~~Lv-sMG-Fs~~qA~kALKat~~NvErAaDWLFSH~ 58 (63)
T 1wgn_A 21 QCVETVV-NMG-YSYECVLRAMKKKGENIEQILDYLFAHS 58 (63)
T ss_dssp HHHHHHH-HHH-CCHHHHHHHHHHHCSCHHHHHHHHHHHS
T ss_pred HHHHHHH-HcC-CCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 3455555 345 5588899999999999999999998754
No 43
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.14 E-value=0.074 Score=36.30 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=32.7
Q ss_pred hhHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 032619 87 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 127 (137)
Q Consensus 87 ~~~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~~~ 127 (137)
+.+|++++. -|. +.+.++++|..+++|++.|+++|+.-.
T Consensus 22 ~~~I~qL~~-MGF-~~~~a~~AL~~~n~n~e~A~ewL~~h~ 60 (85)
T 2dkl_A 22 SRLIKQLTD-MGF-PREPAEEALKSNNMNLDQAMSALLEKK 60 (85)
T ss_dssp HHHHHHHHH-HTC-CHHHHHHHHHHTTSCHHHHHHHHHTTS
T ss_pred HHHHHHHHH-cCC-CHHHHHHHHHHcCCCHHHHHHHHHHCc
Confidence 667777776 575 589999999999999999999999743
No 44
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=93.97 E-value=0.09 Score=37.54 Aligned_cols=41 Identities=7% Similarity=0.291 Sum_probs=34.5
Q ss_pred CChhHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 032619 85 INAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 127 (137)
Q Consensus 85 ~~~~~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~~~ 127 (137)
.++..|+.++. -|+. ...++++|..++||++.|+++|+.-.
T Consensus 77 ~~e~~v~~L~~-MGF~-~~~a~~AL~~~~~~~e~A~e~L~~~~ 117 (126)
T 2lbc_A 77 PPEEIVAIITS-MGFQ-RNQAIQALRATNNNLERALDWIFSHP 117 (126)
T ss_dssp CCHHHHHHHHH-HTSC-HHHHHHHHHHHTSCHHHHHHHHHTCC
T ss_pred cCHHHHHHHHH-cCCC-HHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 45778888876 5765 89999999999999999999998643
No 45
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=93.59 E-value=0.073 Score=36.15 Aligned_cols=41 Identities=17% Similarity=0.375 Sum_probs=35.3
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhcc
Q 032619 89 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGT 129 (137)
Q Consensus 89 ~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~~~~~ 129 (137)
...+.-.-||..|.+...++|.+-+||+..||.+|-..+-.
T Consensus 27 lLnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~LT~~~~~ 67 (80)
T 1vdl_A 27 FLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAKNAK 67 (80)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTTSCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHHhccccc
Confidence 45666668999999999999999999999999999876543
No 46
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.46 E-value=0.086 Score=34.30 Aligned_cols=40 Identities=15% Similarity=0.335 Sum_probs=34.5
Q ss_pred hHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhc
Q 032619 88 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQG 128 (137)
Q Consensus 88 ~~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~~~~ 128 (137)
+.|.+.|.-|||. ....++.|+.+++|++.||........
T Consensus 19 ~~i~qF~~iTg~~-~~~A~~~Le~~~WdLe~Al~~ff~~~~ 58 (66)
T 2dzl_A 19 VMINQFVLAAGCA-ADQAKQLLQAAHWQFETALSTFFQETN 58 (66)
T ss_dssp HHHHHHHHHHCCC-HHHHHHHHHTTTTCHHHHHHHHHTCSC
T ss_pred HHHHHHHHHcCCC-HHHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence 5799999999995 667899999999999999998876543
No 47
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=93.12 E-value=0.11 Score=40.60 Aligned_cols=37 Identities=24% Similarity=0.303 Sum_probs=33.4
Q ss_pred hHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 032619 88 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 125 (137)
Q Consensus 88 ~~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~ 125 (137)
..|++.-..||.. ..-.+.+|.+++||+|.||++|..
T Consensus 5 ~~VKeLRe~TGag-mmdCKkAL~e~~GD~ekAie~LR~ 41 (196)
T 1aip_C 5 ELIKKLREATGAG-MMDVKRALEDAGWDEEKAVQLLRE 41 (196)
T ss_dssp HHHHHHHHHHCCC-HHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4688888999987 888899999999999999999975
No 48
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=92.80 E-value=0.12 Score=42.41 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=34.4
Q ss_pred hhHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 032619 87 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 125 (137)
Q Consensus 87 ~~~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~ 125 (137)
...|++.-..||.. ..-.+++|.+++||+|.||++|..
T Consensus 5 a~~VKeLRe~TGag-mmdCKKAL~e~~GD~ekAie~LR~ 42 (291)
T 1xb2_B 5 KELLMKLRRKTGYS-FINCKKALETCGGDLKQAESWLHK 42 (291)
T ss_dssp HHHHHHHHHHHCCC-HHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 34788888999987 888999999999999999999986
No 49
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=91.86 E-value=0.021 Score=42.12 Aligned_cols=39 Identities=21% Similarity=0.340 Sum_probs=33.3
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhc
Q 032619 90 IKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQG 128 (137)
Q Consensus 90 v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~~~~ 128 (137)
+.+.-.-||-.|.+.+.++|.+++||+..||.+|-..+.
T Consensus 22 LNQLrEITGIqD~~~L~~ALkAsnGdl~qAV~~LT~~~~ 60 (129)
T 2lva_A 22 LNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDERV 60 (129)
Confidence 444445799999999999999999999999999987643
No 50
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=92.68 E-value=0.24 Score=33.55 Aligned_cols=43 Identities=12% Similarity=0.319 Sum_probs=34.7
Q ss_pred CCChhHHHHHHhcCCCCCHHHHHHHHHHhC-CCHHHHHHHHHHHhc
Q 032619 84 IINAGSIKLVMAGSGCENSEKVEEVLLQVG-GDVDAAIEFLIAEQG 128 (137)
Q Consensus 84 ~~~~~~v~~Vm~~TGc~D~~lIre~L~~~~-gdvdaAI~~Ll~~~~ 128 (137)
.+++..|+++|. -|.. ...++++|...+ +|++.|+++|+.-..
T Consensus 27 ~~~e~~v~~L~~-MGF~-~~~a~~AL~~t~n~n~e~A~ewL~~h~~ 70 (84)
T 1vek_A 27 VANEEIVAQLVS-MGFS-QLHCQKAAINTSNAGVEEAMNWLLSHMD 70 (84)
T ss_dssp CCCHHHHHHHHH-HTCC-HHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHH-cCCC-HHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 456778888886 5654 789999999886 799999999998554
No 51
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=92.35 E-value=0.38 Score=30.32 Aligned_cols=37 Identities=22% Similarity=0.147 Sum_probs=30.9
Q ss_pred hHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHH
Q 032619 88 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE 126 (137)
Q Consensus 88 ~~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~~ 126 (137)
+.|++.|. =..|.+.+.++|...+||+|.|...|+..
T Consensus 13 ~~Ia~Lm~--mGFsr~~ai~AL~~a~nnve~AaniLlef 49 (52)
T 2ooa_A 13 AKIAKLMG--EGYAFEEVKRALEIAQNNVEVARSILREF 49 (52)
T ss_dssp HHHHHHHH--TTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHH--cCCCHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 56777665 24679999999999999999999999875
No 52
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=91.73 E-value=0.25 Score=31.27 Aligned_cols=39 Identities=13% Similarity=0.206 Sum_probs=31.5
Q ss_pred hhHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 032619 87 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 127 (137)
Q Consensus 87 ~~~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~~~ 127 (137)
++.|+..|. =.+|.+.+.++|...+||+|.|...|+..-
T Consensus 10 e~~I~~L~~--lGF~r~~ai~AL~~a~nnve~Aa~iL~ef~ 48 (53)
T 2d9s_A 10 SSEIERLMS--QGYSYQDIQKALVIAHNNIEMAKNILREFS 48 (53)
T ss_dssp HHHHHHHHH--HTCCHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHH--cCCCHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 445666665 246799999999999999999999998654
No 53
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=90.37 E-value=0.36 Score=36.94 Aligned_cols=38 Identities=18% Similarity=0.234 Sum_probs=32.1
Q ss_pred hhHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHH
Q 032619 87 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE 126 (137)
Q Consensus 87 ~~~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~~ 126 (137)
.++|+.++.- | .+..+|.++|..|++|.+.|..+|+..
T Consensus 131 ~eaI~rL~~m-G-F~r~~viqA~~ac~knee~Aan~L~~~ 168 (171)
T 2qsf_X 131 DQAISRLCEL-G-FERDLVIQVYFACDKNEEAAANILFSD 168 (171)
T ss_dssp HHHHHHHHTT-T-CCHHHHHHHHHHTTTCHHHHHHHHTTC
T ss_pred HHHHHHHHHc-C-CCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 4567777654 4 789999999999999999999999853
No 54
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=89.71 E-value=0.57 Score=35.78 Aligned_cols=37 Identities=24% Similarity=0.187 Sum_probs=29.9
Q ss_pred hhHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 032619 87 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 125 (137)
Q Consensus 87 ~~~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~ 125 (137)
++.|++.+.- ..|...++++|..+++|++.|+++|+.
T Consensus 164 eekV~~l~~M--Gf~~~~a~~AL~~~~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 164 TKKIENLCAM--GFDRNAVIVALSSKSWDVETATELLLS 200 (201)
T ss_dssp HHHHHHHHTT--TCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 4566665542 457899999999999999999999985
No 55
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=89.64 E-value=0.67 Score=32.88 Aligned_cols=42 Identities=17% Similarity=0.313 Sum_probs=32.5
Q ss_pred CChhHHHHHHhcCCCCCHHHHHHHHHHhCC-CHHHHHHHHHHHhc
Q 032619 85 INAGSIKLVMAGSGCENSEKVEEVLLQVGG-DVDAAIEFLIAEQG 128 (137)
Q Consensus 85 ~~~~~v~~Vm~~TGc~D~~lIre~L~~~~g-dvdaAI~~Ll~~~~ 128 (137)
+++..+++.+. -|-. ...++++|..+++ |++.|+++|+.-..
T Consensus 2 ~d~~~l~~L~~-MGF~-~~~a~~AL~~t~n~~~e~A~~wL~~~~~ 44 (126)
T 2lbc_A 2 IDESSVMQLAE-MGFP-LEACRKAVYFTGNMGAEVAFNWIIVHME 44 (126)
T ss_dssp CCTHHHHHHHT-TSSC-CHHHHHHHHHHTSCCHHHHHHHHHHGGG
T ss_pred CCHHHHHHHHH-cCCC-HHHHHHHHHHcCCCCHHHHHHHHHHhcc
Confidence 44556666665 5554 7999999999975 99999999998554
No 56
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=88.16 E-value=1.5 Score=26.88 Aligned_cols=36 Identities=14% Similarity=0.204 Sum_probs=28.9
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHH
Q 032619 89 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE 126 (137)
Q Consensus 89 ~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~~ 126 (137)
.|...|. =.+|.+.++++|.-.++||+.|-..|+..
T Consensus 7 ~I~~L~s--~Gf~~~~~~rAL~ia~Nnie~A~nIL~ef 42 (46)
T 2oo9_A 7 EIENLMS--QGYSYQDIQKALVIAQNNIEMAKNILREF 42 (46)
T ss_dssp HHHHHHH--TTBCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHH--cCCCHHHHHHHHHHhhccHHHHHHHHHHh
Confidence 3444443 45789999999999999999999999854
No 57
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=87.28 E-value=1.4 Score=29.26 Aligned_cols=42 Identities=14% Similarity=-0.065 Sum_probs=33.6
Q ss_pred hhHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhc
Q 032619 87 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQG 128 (137)
Q Consensus 87 ~~~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~~~~ 128 (137)
+..|..|..-..=.-..-|+.+|..+++|+|.+|.+||..+-
T Consensus 14 ~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~~L 55 (71)
T 2di0_A 14 DSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEERL 55 (71)
T ss_dssp HHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHccCC
Confidence 345666666666666788999999999999999999998653
No 58
>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A
Probab=86.61 E-value=0.21 Score=40.99 Aligned_cols=43 Identities=19% Similarity=0.070 Sum_probs=29.9
Q ss_pred cceeEEEEeCCC-cceEEee---ccCCC---ceEEEEEecCCCcccccccC
Q 032619 2 YCLLLSLMQHMS-PRWYIRN---FDYHE---ARMIHLSYHDGEHYNGVRLK 45 (137)
Q Consensus 2 ~~~~i~Ihq~~~-p~w~I~~---~~~~~---~~~lhlaYh~geHYnSVR~~ 45 (137)
|+++|.|+++++ |-+.+.. |+.+. .+.|+|-|+.| ||+=+-..
T Consensus 225 L~v~I~V~ylDrs~g~~v~~h~~fp~~~~~~~p~I~LLYrpg-HYDILY~~ 274 (284)
T 4dhi_B 225 AGTRVRIEYMDRTAAPNGGWHYDIPSDDQQIAPEITLLYRPG-HYDVIYKK 274 (284)
T ss_dssp TTCCEEEEESSGGGCTTSSSEEEESCCCSCCCCSEEEEEETT-EEEEEEEC
T ss_pred hCCcEEEEEecCCCCCCCcccccCCCCCCCCCCEEEEeecCC-CccccccC
Confidence 689999999875 3343221 33333 37999999997 99977653
No 59
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=86.00 E-value=1.7 Score=27.60 Aligned_cols=38 Identities=13% Similarity=0.184 Sum_probs=30.7
Q ss_pred hHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 032619 88 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 127 (137)
Q Consensus 88 ~~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~~~ 127 (137)
+.|...|. =.+|.+.++++|...++||+.|-..|+..-
T Consensus 9 ~~Ia~L~s--mGfsr~da~~AL~ia~Ndv~~AtNiLlEf~ 46 (56)
T 2juj_A 9 SEIENLMS--QGYSYQDIQKALVIAQNNIEMAKNILREFV 46 (56)
T ss_dssp HHHHHHHT--TTCCHHHHHHHHHHTTTCSHHHHHHHHHSC
T ss_pred HHHHHHHH--cCCCHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 34555544 457899999999999999999999998754
No 60
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=84.00 E-value=1.2 Score=31.81 Aligned_cols=28 Identities=18% Similarity=0.362 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 032619 100 ENSEKVEEVLLQVGGDVDAAIEFLIAEQ 127 (137)
Q Consensus 100 ~D~~lIre~L~~~~gdvdaAI~~Ll~~~ 127 (137)
+....++.+|..+++|+++|+++|++-+
T Consensus 20 Fp~~~~~kAl~~~g~~~e~amewL~~h~ 47 (118)
T 4ae4_A 20 YSYECVLRAMKAAGANIEQILDYLFAHG 47 (118)
T ss_dssp CCHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCcCHHHHHHHHHHhc
Confidence 4689999999999999999999999865
No 61
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=81.75 E-value=2.4 Score=33.87 Aligned_cols=37 Identities=24% Similarity=0.223 Sum_probs=29.9
Q ss_pred hhHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 032619 87 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 125 (137)
Q Consensus 87 ~~~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~ 125 (137)
++.|++.+.- ..+.+.++++|..+++|.+.|+++|+.
T Consensus 216 ~~~v~~l~~m--gf~~~~~~~al~~~nWd~~~A~e~L~~ 252 (253)
T 3e46_A 216 TKKIENLCAA--GFDRNAVIVALSSKSWDVETATELLLS 252 (253)
T ss_dssp HHHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 3456665553 457899999999999999999999985
No 62
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=81.73 E-value=0.7 Score=38.87 Aligned_cols=39 Identities=15% Similarity=0.141 Sum_probs=32.2
Q ss_pred hhHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 032619 87 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 127 (137)
Q Consensus 87 ~~~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~~~ 127 (137)
.++|+.++.- +.+..+++++|..|++|++.|+++|+.-.
T Consensus 326 ~eaI~rL~~m--GF~~~~a~~al~a~~~n~e~A~~~L~~~~ 364 (368)
T 1oqy_A 326 KEAIERLKAL--GFPESLVIQAYFACEKNENLAANFLLSQN 364 (368)
T ss_dssp HHHHHHHHHH--TCCSHHHHHHTSSSSSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHhhCc
Confidence 4567776653 46799999999999999999999999753
No 63
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=81.14 E-value=0.72 Score=38.77 Aligned_cols=37 Identities=22% Similarity=0.326 Sum_probs=31.6
Q ss_pred hhHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 032619 87 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 125 (137)
Q Consensus 87 ~~~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~ 125 (137)
+..|+.+|. -| ++.+.|+.+|+..+||+|.|++||+.
T Consensus 169 ~~~i~~l~~-MG-f~~~~~~~AL~a~~nn~~~A~e~L~~ 205 (368)
T 1oqy_A 169 ETMLTEIMS-MG-YERERVVAALRASYNNPHRAVEYLLT 205 (368)
T ss_dssp HHHHHHHHT-TT-CCSHHHHHHHHHSCSSTTHHHHTTTT
T ss_pred HHHHHHHHH-cC-CCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 567888775 44 77999999999999999999999974
No 64
>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 E2, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* 3o2p_A 3o6b_A 3tdi_B 2l4e_A 2l4f_A
Probab=75.19 E-value=3.8 Score=33.10 Aligned_cols=42 Identities=10% Similarity=0.105 Sum_probs=35.9
Q ss_pred hhHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhcc
Q 032619 87 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGT 129 (137)
Q Consensus 87 ~~~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~~~~~ 129 (137)
.+.+++.|.-|||. ....+..|+.++.|++.|++...+....
T Consensus 16 ~~~i~qF~~iTg~~-~~~A~~~L~~~~WdLe~Al~~ff~~~~~ 57 (270)
T 3bq3_A 16 QEAIESFTSLTKCD-PKVSRKYLQRNHWNINYALNDYYDKEIG 57 (270)
T ss_dssp HHHHHHHHHHHCCC-HHHHHHHHHTTTTCHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCC-HHHHHHHHHHcCCCHHHHHHHHHhCccc
Confidence 45799999999997 4567889999999999999998876543
No 65
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=75.01 E-value=5.4 Score=28.44 Aligned_cols=39 Identities=23% Similarity=0.366 Sum_probs=34.1
Q ss_pred hHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 032619 88 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 127 (137)
Q Consensus 88 ~~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~~~ 127 (137)
..++..|..+.- |+-.|.++|.+..||+++|-.+|+.-.
T Consensus 15 ~~i~~lMeef~~-DL~sVTqAlLK~SGel~at~~fL~~~~ 53 (111)
T 3k6g_A 15 KIIRQLMEKFNL-DLSTVTQAFLKNSGELEATSAFLASGQ 53 (111)
T ss_dssp HHHHHHHHHTTC-CHHHHHHHHHHTTTCHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhh-hHHHHHHHHHHccccHHHHHHHHhCCC
Confidence 367888888875 899999999999999999999998754
No 66
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=72.41 E-value=7.9 Score=24.64 Aligned_cols=38 Identities=8% Similarity=-0.062 Sum_probs=32.7
Q ss_pred hhHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 032619 87 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 125 (137)
Q Consensus 87 ~~~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~ 125 (137)
++.++.|..-..=...+.|+.-|+.. |+|+++|+.+|.
T Consensus 18 ~~Mve~V~~mFPqv~~~~I~~DL~rT-gSVe~TienILe 55 (58)
T 4g3o_A 18 NAMAHQIQEMFPQVPYHLVLQDLQLT-RSVEITTDNILE 55 (58)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHHHH-CCHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHh-CCHHHHHHHHHc
Confidence 34677787788888999999999987 999999999985
No 67
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=71.21 E-value=9.1 Score=26.02 Aligned_cols=30 Identities=20% Similarity=0.371 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHHHhCCCHHHHHHHHHHHhc
Q 032619 98 GCENSEKVEEVLLQVGGDVDAAIEFLIAEQG 128 (137)
Q Consensus 98 Gc~D~~lIre~L~~~~gdvdaAI~~Ll~~~~ 128 (137)
.|.+.. ++++-.++++|++.|++++|....
T Consensus 48 sV~e~~-Lv~ailk~dfD~ekALd~vL~~~~ 77 (83)
T 1ufz_A 48 AVPDDI-LTEAILKHKFDVQKALSVVLEQDG 77 (83)
T ss_dssp TSCHHH-HHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cCCHHH-HHHHHHHhcCCHHHHHHHHHhccc
Confidence 345555 455777899999999999998754
No 68
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=68.46 E-value=5.2 Score=24.55 Aligned_cols=23 Identities=22% Similarity=0.159 Sum_probs=19.4
Q ss_pred CHHHHHHHHHHhCCCHHHHHHHH
Q 032619 101 NSEKVEEVLLQVGGDVDAAIEFL 123 (137)
Q Consensus 101 D~~lIre~L~~~~gdvdaAI~~L 123 (137)
..+.|+++|+.++||+..|...|
T Consensus 20 E~~~i~~aL~~~~gn~~~aA~~L 42 (63)
T 3e7l_A 20 EKIFIEEKLREYDYDLKRTAEEI 42 (63)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHH
Confidence 46789999999999998887654
No 69
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=68.10 E-value=5.7 Score=24.85 Aligned_cols=30 Identities=20% Similarity=0.293 Sum_probs=23.5
Q ss_pred HhcCCCCC-HHHHHHHHHHhCCCHHHHHHHH
Q 032619 94 MAGSGCEN-SEKVEEVLLQVGGDVDAAIEFL 123 (137)
Q Consensus 94 m~~TGc~D-~~lIre~L~~~~gdvdaAI~~L 123 (137)
|.+-|-+| -.-..+.|+..+|||.+|++.|
T Consensus 17 Ml~MGF~negGWLt~LL~~k~gDI~~aLD~l 47 (52)
T 1q02_A 17 MLSMGFSDEGGWLTRLLQTKNYDIGAALDTI 47 (52)
T ss_dssp HHTTTCCCTTSHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHcCCCccccHHHHHHHHccCCHHHHHHHh
Confidence 55667763 3456779999999999999976
No 70
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=67.66 E-value=3.8 Score=31.15 Aligned_cols=34 Identities=29% Similarity=0.383 Sum_probs=27.8
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHH
Q 032619 89 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFL 123 (137)
Q Consensus 89 ~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~L 123 (137)
+++++| +.|-.+.+.+.++|.+.+||++.|+.-|
T Consensus 105 K~~eL~-s~G~~~~~~~~~aL~~~~Gdv~~Al~eL 138 (162)
T 4dbg_B 105 KVQELQ-SLGFGPEEGSLQALFQHGGDVSRALTEL 138 (162)
T ss_dssp HHHHHH-HTTCCGGGTHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHH-hcCCchHHHHHHHHHHcCCcHHHHHHHH
Confidence 344444 5788899999999999999999998654
No 71
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=67.53 E-value=0.93 Score=44.00 Aligned_cols=39 Identities=23% Similarity=0.334 Sum_probs=32.3
Q ss_pred ChhHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 032619 86 NAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 125 (137)
Q Consensus 86 ~~~~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~ 125 (137)
+...|++.-..||.. ..-.+++|.+++||+|.||++|..
T Consensus 5 ta~~VKeLRe~TGag-mmdCKKAL~e~~GD~ekAie~LRk 43 (1289)
T 3avx_A 5 TASLVKELRERTGAG-MMDCKKALTEANGDIELAIENMRK 43 (1289)
T ss_dssp CCSCTHHHHTTTCCC-TTTTTTTTTTTTTCHHHHHHHHHT
T ss_pred CHHHHHHHHHHhCCC-HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 345688888899986 556678999999999999999973
No 72
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.16 E-value=16 Score=23.09 Aligned_cols=40 Identities=8% Similarity=-0.053 Sum_probs=34.0
Q ss_pred hhHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 032619 87 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 127 (137)
Q Consensus 87 ~~~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~~~ 127 (137)
+..++.|..-..=...+.|+.=|+..+ +|+++++.+|.-+
T Consensus 14 ~~mv~~V~~mfP~vp~~~I~~DL~~Tg-sVe~TienILeGr 53 (58)
T 2ejs_A 14 NAMAHQIQEMFPQVPYHLVLQDLQLTR-SVEITTDNILEGR 53 (58)
T ss_dssp HHHHHHHHHHCCSSCHHHHHHHHHHHC-SHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhC-CHHHHHHHHHhcC
Confidence 456778888888889999999998776 9999999999754
No 73
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=65.51 E-value=12 Score=23.57 Aligned_cols=33 Identities=30% Similarity=0.647 Sum_probs=27.1
Q ss_pred CCCCCHHHHHHHHHHhCC-CHHHHHHHHHHHhccc
Q 032619 97 SGCENSEKVEEVLLQVGG-DVDAAIEFLIAEQGTE 130 (137)
Q Consensus 97 TGc~D~~lIre~L~~~~g-dvdaAI~~Ll~~~~~~ 130 (137)
-||. .+++..+|..-++ .++.|+++|+-+...+
T Consensus 19 MGFd-~erae~Alk~Tg~~Gle~AmewL~k~~~~~ 52 (54)
T 2cos_A 19 AGCD-QEMAGRALKQTGSRSIEAALEYISKMSGPS 52 (54)
T ss_dssp HHCC-HHHHHHHHHHHTSCCHHHHHHHHHHHSCSC
T ss_pred cCCC-HHHHHHHHHHhCcccHHHHHHHHHHhcCCC
Confidence 4664 7888999998875 7999999999987654
No 74
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=63.47 E-value=7.2 Score=25.85 Aligned_cols=23 Identities=13% Similarity=0.174 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHhCCCHHHHHHHH
Q 032619 101 NSEKVEEVLLQVGGDVDAAIEFL 123 (137)
Q Consensus 101 D~~lIre~L~~~~gdvdaAI~~L 123 (137)
..+.|+++|+.++||+..|...|
T Consensus 42 Er~~I~~aL~~~~GN~s~AA~~L 64 (81)
T 1umq_A 42 RWEHIQRIYEMCDRNVSETARRL 64 (81)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHh
Confidence 35789999999999999887654
No 75
>2l2d_A OTU domain-containing protein 7A; UBA fold, structural genomics, PSI-biology, protein structur initiative, northeast structural genomics consortium; NMR {Homo sapiens}
Probab=53.06 E-value=28 Score=22.79 Aligned_cols=42 Identities=14% Similarity=0.112 Sum_probs=35.1
Q ss_pred hhHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhcc
Q 032619 87 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGT 129 (137)
Q Consensus 87 ~~~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~~~~~ 129 (137)
+..+.....+|||. ..+.|..|+--+-|+-+|..-.-+.++.
T Consensus 18 davls~fvrstgae-pgLaRDlleGKnWDl~AAL~D~eqLrqv 59 (73)
T 2l2d_A 18 DAVLSDFVRSTGAE-PGLARDLLEGKNWDLTAALSDYEQLRQV 59 (73)
T ss_dssp HHHHHHHHHHHCCC-HHHHHHHHHHTTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCC-cchhHHhhccCCccHhHHhhhHHHHHHH
Confidence 55788899999997 8889999999999999998766665543
No 76
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.38 E-value=34 Score=21.80 Aligned_cols=40 Identities=20% Similarity=0.070 Sum_probs=33.2
Q ss_pred hhHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 032619 87 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 127 (137)
Q Consensus 87 ~~~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~~~ 127 (137)
...++.|..-..=...+.|+.=|+..+ +|+++|+.+|.-+
T Consensus 14 ~~mv~~V~~mfP~vp~~~I~~DL~~Tg-sVe~TienILeGr 53 (61)
T 2ekf_A 14 ATLAQRVKEVLPHVPLGVIQRDLAKTG-CVDLTITNLLEGA 53 (61)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHTSC-CHHHHHHHHHSCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhC-CHHHHHHHHHcCC
Confidence 456778888888888999999997665 9999999999654
No 77
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=48.34 E-value=17 Score=24.68 Aligned_cols=23 Identities=13% Similarity=0.138 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHhCCCHHHHHHHH
Q 032619 101 NSEKVEEVLLQVGGDVDAAIEFL 123 (137)
Q Consensus 101 D~~lIre~L~~~~gdvdaAI~~L 123 (137)
....|+++|+.++||+..|...|
T Consensus 59 Er~~I~~aL~~~~gn~~~AA~~L 81 (98)
T 1eto_A 59 EQPLLDMVMQYTLGNQTRAALMM 81 (98)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHh
Confidence 46789999999999999887654
No 78
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=48.06 E-value=40 Score=20.87 Aligned_cols=42 Identities=14% Similarity=0.092 Sum_probs=33.3
Q ss_pred hhHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhc
Q 032619 87 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQG 128 (137)
Q Consensus 87 ~~~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~~~~ 128 (137)
++.+.++..-.-....+.|..-|+--+=||.-||-.||.-+.
T Consensus 10 e~li~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLsRDd 51 (53)
T 2qho_B 10 EELISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLLSRDD 51 (53)
T ss_dssp HHHHHHHHHHSTTCCHHHHHHHHHHTTTCHHHHHHHHHC---
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhCccHHHHHHHHhcccc
Confidence 667777777666667899999999999999999999996543
No 79
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=44.60 E-value=12 Score=24.51 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHhCCCHHHHHHHH
Q 032619 101 NSEKVEEVLLQVGGDVDAAIEFL 123 (137)
Q Consensus 101 D~~lIre~L~~~~gdvdaAI~~L 123 (137)
....|+++|+.++||+..|...|
T Consensus 52 E~~~i~~aL~~~~gn~~~aA~~L 74 (91)
T 1ntc_A 52 ERTLLTTALRHTQGHKQEAARLL 74 (91)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHH
Confidence 57889999999999998876643
No 80
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=44.28 E-value=55 Score=20.27 Aligned_cols=39 Identities=13% Similarity=0.066 Sum_probs=32.8
Q ss_pred hHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 032619 88 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 127 (137)
Q Consensus 88 ~~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~~~ 127 (137)
..+..++..||=- .+--+..|++++-|.+.|+.......
T Consensus 9 ~mv~~~s~~Tgmn-~~~s~~cL~~~~Wd~~~A~~~F~~l~ 47 (59)
T 1oai_A 9 EMLQAFSTQSGMN-LEWSQKCLQDNNWDYTRSAQAFTHLK 47 (59)
T ss_dssp HHHHHHHHHHCCC-HHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC-HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4678888888875 78888899999999999999877654
No 81
>2ay0_A Bifunctional PUTA protein; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.43.1.11
Probab=42.08 E-value=21 Score=21.93 Aligned_cols=25 Identities=8% Similarity=0.024 Sum_probs=21.7
Q ss_pred hHHHHHHhcCCCCCHHHHHHHHHHh
Q 032619 88 GSIKLVMAGSGCENSEKVEEVLLQV 112 (137)
Q Consensus 88 ~~v~~Vm~~TGc~D~~lIre~L~~~ 112 (137)
+.+..+...+||+-..+|++++.+.
T Consensus 16 ~rL~~lA~~~~rs~s~lireAi~~y 40 (58)
T 2ay0_A 16 ERIKSAATRIDRTPHWLIKQAIFSY 40 (58)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4688888999999999999998765
No 82
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=40.41 E-value=28 Score=26.36 Aligned_cols=33 Identities=18% Similarity=0.323 Sum_probs=27.6
Q ss_pred CCCCHHHHHHHHHHhCCCHHHHHHHHHHHhccc
Q 032619 98 GCENSEKVEEVLLQVGGDVDAAIEFLIAEQGTE 130 (137)
Q Consensus 98 Gc~D~~lIre~L~~~~gdvdaAI~~Ll~~~~~~ 130 (137)
|--...-.+++|...+||++.||...+..+..+
T Consensus 73 g~~s~~EAr~Aw~~~~Gd~~~Av~~ci~~R~~K 105 (162)
T 4dbg_B 73 GAFSCQEARRAWLDRHGNLDEAVEECVRTRRRK 105 (162)
T ss_dssp CCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHccCChHHHHHHHHHHHHHH
Confidence 444678999999999999999999988776543
No 83
>2gpe_A Bifunctional protein PUTA; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 1.90A {Escherichia coli} PDB: 2rbf_A* 2jxg_A 2jxh_A 2jxi_A*
Probab=40.24 E-value=24 Score=20.48 Aligned_cols=25 Identities=8% Similarity=0.024 Sum_probs=21.6
Q ss_pred hHHHHHHhcCCCCCHHHHHHHHHHh
Q 032619 88 GSIKLVMAGSGCENSEKVEEVLLQV 112 (137)
Q Consensus 88 ~~v~~Vm~~TGc~D~~lIre~L~~~ 112 (137)
..+..+...+|++-..+|+++++..
T Consensus 16 ~~l~~lA~~~~rs~s~lir~Ai~~y 40 (52)
T 2gpe_A 16 ERIKSAATRIDRTPHWLIKQAIFSY 40 (52)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4678888899999999999998876
No 84
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=40.17 E-value=21 Score=21.67 Aligned_cols=22 Identities=5% Similarity=0.009 Sum_probs=17.7
Q ss_pred CHHHHHHHHHHhCCCHHHHHHHH
Q 032619 101 NSEKVEEVLLQVGGDVDAAIEFL 123 (137)
Q Consensus 101 D~~lIre~L~~~~gdvdaAI~~L 123 (137)
..+.|+++|+.+ ||+..|...|
T Consensus 22 Er~~I~~aL~~~-gn~~~aA~~L 43 (61)
T 1g2h_A 22 EAQVLKLFYAEY-PSTRKLAQRL 43 (61)
T ss_dssp HHHHHHHHHHHS-CSHHHHHHHT
T ss_pred HHHHHHHHHHHh-CCHHHHHHHh
Confidence 357899999999 9998886643
No 85
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=39.97 E-value=9.2 Score=30.43 Aligned_cols=37 Identities=22% Similarity=0.522 Sum_probs=11.3
Q ss_pred hHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 032619 88 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 125 (137)
Q Consensus 88 ~~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~ 125 (137)
-....|+..|||.. +.++++|+.++|+|--||..++.
T Consensus 246 r~~~~i~~~~~~~~-~~~~~~l~~~~~~~~~a~~~~~~ 282 (306)
T 1nri_A 246 RAVRIVMQATDCNK-TLAEQTLLEADQNAKLAIMMILS 282 (306)
T ss_dssp HHHHHHHHHSCCCC------------------------
T ss_pred HHHHHHHHHhCCCH-HHHHHHHHHhCCChHHHHHHHHh
Confidence 45778899999984 56899999999999999987643
No 86
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.78 E-value=84 Score=20.82 Aligned_cols=42 Identities=17% Similarity=0.090 Sum_probs=30.0
Q ss_pred ChhHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 032619 86 NAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 127 (137)
Q Consensus 86 ~~~~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~~~ 127 (137)
|-...+++..+..=-=-..|.+.+.++++|.|+++..|-++.
T Consensus 10 d~qvfheLkQrFPEvPd~VVsqc~~qN~~Nl~aC~~~L~qES 51 (75)
T 2dae_A 10 DFQVLHDLRQKFPEVPEVVVSRCMLQNNNNLDACCAVLSQES 51 (75)
T ss_dssp CHHHHHHHHHHSSSSCHHHHHHHHTTTTSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCcHHHHHHHHHHhccCHHHHHHHHHHhc
Confidence 333455555555555456677888899999999999998875
No 87
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=33.16 E-value=72 Score=22.59 Aligned_cols=44 Identities=16% Similarity=0.143 Sum_probs=36.5
Q ss_pred CChhHHHHHHhcCCCC----CHHHHHHHHHHhC--CCHHHHHHHHHHHhc
Q 032619 85 INAGSIKLVMAGSGCE----NSEKVEEVLLQVG--GDVDAAIEFLIAEQG 128 (137)
Q Consensus 85 ~~~~~v~~Vm~~TGc~----D~~lIre~L~~~~--gdvdaAI~~Ll~~~~ 128 (137)
+|-+.+++.||-.-.. +...|..+|.+|+ +|.-.||-+|-+...
T Consensus 24 iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 24 IDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp CCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4678899999976554 6799999999999 999999999877653
No 88
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=32.26 E-value=30 Score=19.20 Aligned_cols=25 Identities=12% Similarity=0.126 Sum_probs=20.4
Q ss_pred hHHHHHHhcCCCCCHHHHHHHHHHh
Q 032619 88 GSIKLVMAGSGCENSEKVEEVLLQV 112 (137)
Q Consensus 88 ~~v~~Vm~~TGc~D~~lIre~L~~~ 112 (137)
..+.+.+..+|++-.++|+++|+..
T Consensus 15 ~~Ld~~a~~~g~srS~~ir~ai~~~ 39 (45)
T 2cpg_A 15 ENLEKMAREMGLSKSAMISVALENY 39 (45)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3577778889999999999998764
No 89
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=28.05 E-value=53 Score=30.11 Aligned_cols=40 Identities=8% Similarity=0.277 Sum_probs=29.9
Q ss_pred CChhHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHH
Q 032619 85 INAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE 126 (137)
Q Consensus 85 ~~~~~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~~ 126 (137)
.++..+..+.. -| .+.+..+.+|.+.+||++.||+.|..-
T Consensus 719 ~~~e~i~~l~~-mG-f~~~~a~~aL~~t~~~~eraidwlfs~ 758 (854)
T 3ihp_A 719 PPEDCVTTIVS-MG-FSRDQALKALRATNNSLERAVDWIFSH 758 (854)
T ss_dssp CCHHHHHHHHT-TT-CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHH-cC-CCHHHHHHHHHhhcCcHHHHHHhhhcC
Confidence 34444444332 33 578899999999999999999999874
No 90
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=24.82 E-value=94 Score=19.15 Aligned_cols=38 Identities=11% Similarity=-0.022 Sum_probs=31.9
Q ss_pred hHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHH
Q 032619 88 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE 126 (137)
Q Consensus 88 ~~v~~Vm~~TGc~D~~lIre~L~~~~gdvdaAI~~Ll~~ 126 (137)
..|.+++..||=- .+--+..|++++-|.+.|+......
T Consensus 8 ~mv~~~s~~T~Mn-~e~S~~cL~~n~Wd~~~A~~~F~~~ 45 (57)
T 2jp7_A 8 ELLNKLHLETKLN-AEYTFMLAEQSNWNYEVAIKGFQSS 45 (57)
T ss_dssp HHHHHHHHHHCSC-HHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred HHHHHHHHHHCCC-HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4688888888875 8888899999999999999876654
No 91
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=20.59 E-value=1.5e+02 Score=22.02 Aligned_cols=45 Identities=16% Similarity=0.112 Sum_probs=37.1
Q ss_pred CCChhHHHHHHhcCCCC----CHHHHHHHHHHhC--CCHHHHHHHHHHHhc
Q 032619 84 IINAGSIKLVMAGSGCE----NSEKVEEVLLQVG--GDVDAAIEFLIAEQG 128 (137)
Q Consensus 84 ~~~~~~v~~Vm~~TGc~----D~~lIre~L~~~~--gdvdaAI~~Ll~~~~ 128 (137)
.+|-+.+++-||-.-.. +...|..+|.+|+ +|.-.||-+|-....
T Consensus 66 ~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~ 116 (152)
T 2y69_E 66 DIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 116 (152)
T ss_dssp TCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34578899999977654 6799999999999 999999999877654
Done!