BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032621
(137 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TQ1|A Chain A, Solution Structure Of At5g66040, A Putative Protein From
Arabidosis Thaliana
Length = 129
Score = 112 bits (279), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 57/113 (50%), Positives = 72/113 (63%), Gaps = 2/113 (1%)
Query: 14 TVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVR 73
+V V A +LL +G+ YLDVRT EEF +GH A N+PYM G KN DFL++V
Sbjct: 19 SVSVTVAHDLLLAGHRYLDVRTPEEFSQGH--ACGAINVPYMNRGASGMSKNTDFLEQVS 76
Query: 74 SLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKA 126
S + D ++VGCQSG RS+ AT DLL AGF V + GG+ AW +NGL KA
Sbjct: 77 SHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTKA 129
>pdb|3TP9|A Chain A, Crystal Structure Of Alicyclobacillus Acidocaldarius
Protein With Beta-Lactamase And Rhodanese Domains
pdb|3TP9|B Chain B, Crystal Structure Of Alicyclobacillus Acidocaldarius
Protein With Beta-Lactamase And Rhodanese Domains
Length = 474
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 54/123 (43%), Gaps = 22/123 (17%)
Query: 7 SSGAEVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNP 66
+S A V +VR A L + G LDVR +E+ GH+ A +IP
Sbjct: 371 ASYANVSPDEVRGA--LAQQGLWLLDVRNVDEWAGGHLPQAH--HIP------------- 413
Query: 67 DFLKKVRSLCKEEDR---LVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLK 123
L K+ + + R + V C++G RS A + L G V N GG+ AW G
Sbjct: 414 --LSKLAAHIHDVPRDGSVCVYCRTGGRSAIAASLLRAHGVGDVRNXVGGYEAWRGKGFP 471
Query: 124 VKA 126
V+A
Sbjct: 472 VEA 474
>pdb|3IWH|A Chain A, Crystal Structure Of Rhodanese-Like Domain Protein From
Staphylococcus Aureus
pdb|3MZZ|A Chain A, Crystal Structure Of Rhodanese-Like Domain Protein From
Staphylococcus Aureus
Length = 103
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 47/114 (41%), Gaps = 15/114 (13%)
Query: 13 ITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKV 72
IT D K L +DVRT EE G++ AK+ P + PD L
Sbjct: 4 ITTDELKNKLLESKPVQIVDVRTDEETAXGYIPNAKLI--------PXDTI--PDNL--- 50
Query: 73 RSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKA 126
S K E +V C G RS L G V+ GG H AW GL++K+
Sbjct: 51 NSFNKNEIYYIV-CAGGVRSAKVVEYLEANGIDAVNVEGGXH-AWGDEGLEIKS 102
>pdb|2JTQ|A Chain A, Rhodanese From E.Coli
pdb|2JTR|A Chain A, Rhodanese Persulfide From E. Coli
pdb|2JTS|A Chain A, Rhodanese With Anions From E. Coli
Length = 85
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
Query: 30 YLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSG 89
++DVR E++++ HV A N P VK + ++ + D + V C +G
Sbjct: 4 WIDVRVPEQYQQEHVQGA--------INIPLKEVKE----RIATAVPDKNDTVKVYCNAG 51
Query: 90 ARSLHATADLLGAGFKHVSNFGG 112
+S A L G+ HV N GG
Sbjct: 52 RQSGQAKEILSEMGYTHVENAGG 74
>pdb|1QXN|A Chain A, Solution Structure Of The 30 Kda Polysulfide-Sulfur
Transferase Homodimer From Wolinella Succinogenes
pdb|1QXN|B Chain B, Solution Structure Of The 30 Kda Polysulfide-Sulfur
Transferase Homodimer From Wolinella Succinogenes
Length = 137
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 13/120 (10%)
Query: 6 KSSGAEVITVDVRAAKNLLESG--YGYLDVRTAEEFKE-GHVDAAKIFNIPYMFNTPEGR 62
K++ A+++ + + A LL+ +DVR +E K G D + N +M R
Sbjct: 16 KAAKADMVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPD---VKNYKHM-----SR 67
Query: 63 VKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGL 122
K L K S E +VV C++ AR+ A L GFK + N GG W++ GL
Sbjct: 68 GKLEPLLAK--SGLDPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDKWLEEGL 125
>pdb|3ILM|A Chain A, Crystal Structure Of The Alr3790 Protein From Anabaena Sp.
Northeast Structural Genomics Consortium Target Nsr437h
pdb|3ILM|B Chain B, Crystal Structure Of The Alr3790 Protein From Anabaena Sp.
Northeast Structural Genomics Consortium Target Nsr437h
pdb|3ILM|C Chain C, Crystal Structure Of The Alr3790 Protein From Anabaena Sp.
Northeast Structural Genomics Consortium Target Nsr437h
pdb|3ILM|D Chain D, Crystal Structure Of The Alr3790 Protein From Anabaena Sp.
Northeast Structural Genomics Consortium Target Nsr437h
Length = 141
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 42/105 (40%), Gaps = 16/105 (15%)
Query: 16 DVRAAKNLLESG---YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKV 72
D K+ LE G + LDVR + +GH+ A I + + +
Sbjct: 3 DAHVLKSRLEWGEPAFTILDVRDRSTYNDGHIXGAXAXPIEDLVD------------RAS 50
Query: 73 RSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAW 117
SL K D V G ++ A L AGF+HVS GG AW
Sbjct: 51 SSLEKSRDIYVYGA-GDEQTSQAVNLLRSAGFEHVSELKGGLAAW 94
>pdb|3K9R|A Chain A, X-Ray Structure Of The Rhodanese-Like Domain Of The
Alr3790 Protein From Anabaena Sp. Northeast Structural
Genomics Consortium Target Nsr437c.
pdb|3K9R|B Chain B, X-Ray Structure Of The Rhodanese-Like Domain Of The
Alr3790 Protein From Anabaena Sp. Northeast Structural
Genomics Consortium Target Nsr437c.
pdb|3K9R|C Chain C, X-Ray Structure Of The Rhodanese-Like Domain Of The
Alr3790 Protein From Anabaena Sp. Northeast Structural
Genomics Consortium Target Nsr437c.
pdb|3K9R|D Chain D, X-Ray Structure Of The Rhodanese-Like Domain Of The
Alr3790 Protein From Anabaena Sp. Northeast Structural
Genomics Consortium Target Nsr437c
Length = 115
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 41/105 (39%), Gaps = 16/105 (15%)
Query: 16 DVRAAKNLLESG---YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKV 72
D K+ LE G + LDVR + +GH+ A I + + +
Sbjct: 8 DAHVLKSRLEWGEPAFTILDVRDRSTYNDGHIXGAXAXPIEDLVD------------RAS 55
Query: 73 RSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAW 117
SL K D V G S A L AGF+HVS GG AW
Sbjct: 56 SSLEKSRDIYVYGAGDEQTS-QAVNLLRSAGFEHVSELKGGLAAW 99
>pdb|2KL3|A Chain A, Solution Nmr Structure Of The Rhodanese-Like Domain From
Anabaena Sp Alr3790 Protein. Northeast Structural
Genomics Consortium Target Nsr437a
Length = 132
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 41/105 (39%), Gaps = 16/105 (15%)
Query: 16 DVRAAKNLLESG---YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKV 72
D K+ LE G + LDVR + +GH+ A I + + +
Sbjct: 6 DAHVLKSRLEWGEPAFTILDVRDRSTYNDGHIMGAMAMPIEDLVD------------RAS 53
Query: 73 RSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAW 117
SL K D V G S A L AGF+HVS GG AW
Sbjct: 54 SSLEKSRDIYVYGAGDEQTS-QAVNLLRSAGFEHVSELKGGLAAW 97
>pdb|3HIX|A Chain A, Crystal Structure Of The Rhodanese_3 Like Domain From
Anabaena Sp Alr3790 Protein. Northeast Structural
Genomics Consortium Target Nsr437i
pdb|3HIX|B Chain B, Crystal Structure Of The Rhodanese_3 Like Domain From
Anabaena Sp Alr3790 Protein. Northeast Structural
Genomics Consortium Target Nsr437i
pdb|3HIX|C Chain C, Crystal Structure Of The Rhodanese_3 Like Domain From
Anabaena Sp Alr3790 Protein. Northeast Structural
Genomics Consortium Target Nsr437i
Length = 106
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 36/93 (38%), Gaps = 13/93 (13%)
Query: 25 ESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVV 84
E + LDVR + +GH+ A I + + + SL K D V
Sbjct: 11 EPAFTILDVRDRSTYNDGHIXGAXAXPIEDLVD------------RASSSLEKSRDIYVY 58
Query: 85 GCQSGARSLHATADLLGAGFKHVSNFGGGHMAW 117
G S A L AGF+HVS GG AW
Sbjct: 59 GAGDEQTS-QAVNLLRSAGFEHVSELKGGLAAW 90
>pdb|3D1P|A Chain A, Atomic Resolution Structure Of Uncharacterized Protein
From Saccharomyces Cerevisiae
Length = 139
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Query: 31 LDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEED--RLVVGCQS 88
+DVR E+ H+ A+ N+PY + P+ +P +K + K + L+ C S
Sbjct: 44 VDVREPSEYSIVHIPAS--INVPYR-SHPDAFALDPLEFEKQIGIPKPDSAKELIFYCAS 100
Query: 89 GARSLHATADLLGAGFKHVSNFGGGHMAWVQNG 121
G R A G+ + S + G WV +G
Sbjct: 101 GKRGGEAQKVASSHGYSNTSLYPGSXNDWVSHG 133
>pdb|1URH|A Chain A, The "rhodanese" Fold And Catalytic Mechanism Of
3-Mercaptopyruvate Sulfotransferases: Crystal Structure
Of Ssea From Escherichia Coli
pdb|1URH|B Chain B, The "rhodanese" Fold And Catalytic Mechanism Of
3-Mercaptopyruvate Sulfotransferases: Crystal Structure
Of Ssea From Escherichia Coli
Length = 280
Score = 32.0 bits (71), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 24/127 (18%)
Query: 11 EVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNI----------PYMFNTPE 60
E+ +D R A G D A+E+ GH+ A F+I P+M PE
Sbjct: 19 EIQIIDARMASP------GQEDRNVAQEYLNGHIPGAVFFDIEALSDHTSPLPHMLPRPE 72
Query: 61 GRVKNPDFLKKVRSLCKEEDRLVVGCQSGA--RSLHATADLLGAGFKHVSNFGGGHMAWV 118
F +R L +D+ ++ G + A L G + VS GGG W
Sbjct: 73 ------TFAVAMRELGVNQDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGLAGWQ 126
Query: 119 QNGLKVK 125
++ L ++
Sbjct: 127 RDDLLLE 133
>pdb|3R2U|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|B Chain B, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|C Chain C, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|D Chain D, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
Length = 466
Score = 32.0 bits (71), Expect = 0.12, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 14/84 (16%)
Query: 31 LDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGA 90
LDVR E+ GH+ A + P G++ D + D + V CQSG
Sbjct: 391 LDVRNDNEWNNGHLSQA--------VHVPHGKLLETDLP------FNKNDVIYVHCQSGI 436
Query: 91 RSLHATADLLGAGFKHVSNFGGGH 114
RS A L G+ ++ N G+
Sbjct: 437 RSSIAIGILEHKGYHNIINVNEGY 460
>pdb|2HHG|A Chain A, Structure Of Protein Of Unknown Function Rpa3614, Possible
Tyrosine Phosphatase, From Rhodopseudomonas Palustris
Cga009
Length = 139
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 47/124 (37%), Gaps = 27/124 (21%)
Query: 6 KSSGAEVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVK- 64
KS ++V+ VD+R + + G IP F+ G ++
Sbjct: 34 KSGASDVVIVDIRDPREIERDG-----------------------KIPGSFSCTRGXLEF 70
Query: 65 --NPDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGL 122
+P + + +E+ + V C G RS A G K V++ GG AW G
Sbjct: 71 WIDPQ-SPYAKPIFQEDKKFVFYCAGGLRSALAAKTAQDXGLKPVAHIEGGFGAWRDAGG 129
Query: 123 KVKA 126
++A
Sbjct: 130 PIEA 133
>pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICR|B Chain B, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICS|A Chain A, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICS|B Chain B, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICT|A Chain A, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
pdb|3ICT|B Chain B, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
Length = 588
Score = 29.6 bits (65), Expect = 0.61, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 21/105 (20%)
Query: 12 VITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKK 71
V TV ++E+G +DVR E K+G + + NIP L +
Sbjct: 488 VDTVQWHEIDRIVENGGYLIDVREPNELKQGXIKGS--INIP---------------LDE 530
Query: 72 VRSLCKE---EDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGG 113
+R +E + + + CQ G R A L G+K V N GG
Sbjct: 531 LRDRLEEVPVDKDIYITCQLGXRGYVAARXLXEKGYK-VKNVDGG 574
>pdb|2W1V|A Chain A, Crystal Structure Of Mouse Nitrilase-2 At 1.4a
Resolution
pdb|2W1V|B Chain B, Crystal Structure Of Mouse Nitrilase-2 At 1.4a
Resolution
Length = 276
Score = 29.3 bits (64), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 33 VRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKV 72
R +E A I ++P FN+P G PD+ +K+
Sbjct: 22 TRACSLVREAAKQGANIVSLPECFNSPYGTTYFPDYAEKI 61
>pdb|1YT8|A Chain A, Crystal Structure Of Thiosulfate Sulfurtransferase From
Pseudomonas Aeruginosa
Length = 539
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 14/76 (18%)
Query: 31 LDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGR-VKNPDFLKKVRSLCKEEDRLVVGCQSG 89
LDVRT EE++ GH+ ++ +TP G+ V+ D + VR RLV+ G
Sbjct: 286 LDVRTPEEYEAGHLPGSR--------STPGGQLVQETDHVASVRGA-----RLVLVDDDG 332
Query: 90 ARSLHATADLLGAGFK 105
R+ + + L G++
Sbjct: 333 VRANXSASWLAQXGWQ 348
Score = 26.2 bits (56), Expect = 6.7, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 81 RLVVGCQSGARSLHATADLLGAGFKH-VSNFGGGHMAWVQNGLKVK 125
R++V C RS+ T LL AG + V+ G + W G +++
Sbjct: 188 RVIVNCAGRTRSIIGTQSLLNAGIPNPVAALRNGTIGWTLAGQQLE 233
>pdb|3G5J|A Chain A, Crystal Structure Of N-Terminal Domain Of Putative AtpGTP
BINDING Protein From Clostridium Difficile 630
pdb|3G5J|B Chain B, Crystal Structure Of N-Terminal Domain Of Putative AtpGTP
BINDING Protein From Clostridium Difficile 630
Length = 134
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 39/110 (35%), Gaps = 24/110 (21%)
Query: 30 YLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRV----------------------KNPD 67
++DVRT E++E H+ A N P N V K D
Sbjct: 20 FVDVRTEGEYEEDHILNA--INXPLFKNNEHNEVGTIYKXQGKHEAIQKGFDYVSYKLKD 77
Query: 68 FLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAW 117
+ L D +V+ C G + +LL + +V GG+ A+
Sbjct: 78 IYLQAAELALNYDNIVIYCARGGXRSGSIVNLLSSLGVNVYQLEGGYKAY 127
>pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
pdb|2EH6|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
Length = 375
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 15/18 (83%)
Query: 67 DFLKKVRSLCKEEDRLVV 84
DFL K++ +CKE+D L++
Sbjct: 193 DFLSKLQEICKEKDVLLI 210
>pdb|1GN0|A Chain A, Escherichia Coli Glpe Sulfurtransferase Soaked With Kcn
Length = 108
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 15/107 (14%)
Query: 11 EVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLK 70
E I V A + L E +D+R + F GH A + F++ +T +++ DF
Sbjct: 5 ECINV-ADAHQKLQEKEAVLVDIRDPQSFAMGH--AVQAFHLTN--DTLGAFMRDNDFDT 59
Query: 71 KVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAW 117
V +V C G S A LL G+ V + GG AW
Sbjct: 60 PV----------MVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAW 96
>pdb|3NX3|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
pdb|3NX3|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
Length = 395
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 65 NPDFLKKVRSLCKEEDRLVVG 85
N DF K +R LC E+D L++
Sbjct: 198 NKDFYKALRKLCDEKDILLIA 218
>pdb|1SZN|A Chain A, The Structure Of Alpha-Galactosidase
pdb|1T0O|A Chain A, The Structure Of Alpha-Galactosidase From Trichoderma
Reesei Complexed With Beta-D-Galactose
Length = 417
Score = 26.6 bits (57), Expect = 4.8, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 1 MDSTGKSSGAEVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDA 46
+D + S AE+I + LL++GY Y+++ K+G VD
Sbjct: 26 IDESKFLSAAELIV-----SSGLLDAGYNYVNIDDCWSMKDGRVDG 66
>pdb|2UV9|A Chain A, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|B Chain B, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|C Chain C, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|D Chain D, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|E Chain E, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|F Chain F, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVB|A Chain A, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|B Chain B, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|C Chain C, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|D Chain D, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|E Chain E, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|F Chain F, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
Length = 1878
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 36 AEEFKEGHVDAAKIFNIP 53
AEEFK H D +IF IP
Sbjct: 1116 AEEFKREHGDKVEIFEIP 1133
>pdb|2UV8|A Chain A, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|B Chain B, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|C Chain C, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 1887
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 34 RTAEEFKEGHVDAAKIFNIP 53
TAE+FK H D IF IP
Sbjct: 1139 ETAEQFKHQHGDKVDIFEIP 1158
>pdb|2VKZ|A Chain A, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|B Chain B, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|C Chain C, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|A Chain A, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|B Chain B, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|C Chain C, Saccharomyces Cerevisiae Fas Type I
Length = 1887
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 34 RTAEEFKEGHVDAAKIFNIP 53
TAE+FK H D IF IP
Sbjct: 1139 ETAEQFKHQHGDKVDIFEIP 1158
>pdb|2PFF|A Chain A, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|D Chain D, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|G Chain G, Structural Insights Of Yeast Fatty Acid Synthase
Length = 1688
Score = 26.2 bits (56), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 35 TAEEFKEGHVDAAKIFNIP 53
TAE+FK H D IF IP
Sbjct: 941 TAEQFKHQHGDKVDIFEIP 959
>pdb|3IPP|A Chain A, Crystal Structure Of Sulfur-Free Ynje
pdb|3IPP|B Chain B, Crystal Structure Of Sulfur-Free Ynje
Length = 416
Score = 26.2 bits (56), Expect = 6.6, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 56 FNTPEGRVKNPDFLKKVRSL--CKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGG 113
F+ P+G +++ D + + K E ++ C +G R+ G+K+VS + GG
Sbjct: 334 FHNPDGTMRSADDITAMWKAWNIKPEQQVSFYCGTGWRASETFMYARAMGWKNVSVYDGG 393
Query: 114 HMAW 117
W
Sbjct: 394 WYEW 397
>pdb|3ZEN|D Chain D, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|E Chain E, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|F Chain F, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|A Chain A, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|B Chain B, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|C Chain C, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
Length = 3089
Score = 26.2 bits (56), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 88 SGARSLHATADLLGAGFKHVSNFGGGHMAWVQN 120
+ A + HA D L AG + FGG AW++
Sbjct: 26 NAADTAHALVDRLSAGEPYAVAFGGQGSAWLET 58
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,403,980
Number of Sequences: 62578
Number of extensions: 171627
Number of successful extensions: 493
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 465
Number of HSP's gapped (non-prelim): 33
length of query: 137
length of database: 14,973,337
effective HSP length: 89
effective length of query: 48
effective length of database: 9,403,895
effective search space: 451386960
effective search space used: 451386960
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)