Query 032621
Match_columns 137
No_of_seqs 119 out of 1045
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 03:48:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032621.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032621hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02160 thiosulfate sulfurtra 100.0 1.3E-27 2.9E-32 159.0 14.4 121 11-131 13-133 (136)
2 KOG1530 Rhodanese-related sulf 99.9 4.4E-27 9.6E-32 151.4 10.7 113 10-124 20-134 (136)
3 cd01533 4RHOD_Repeat_2 Member 99.9 1.7E-25 3.7E-30 143.5 10.7 100 9-121 6-109 (109)
4 PRK00162 glpE thiosulfate sulf 99.9 9E-25 2E-29 139.9 11.4 104 10-127 2-106 (108)
5 cd01527 RHOD_YgaP Member of th 99.9 7.2E-25 1.6E-29 138.2 9.3 98 13-124 2-99 (99)
6 cd01518 RHOD_YceA Member of th 99.9 7.2E-25 1.6E-29 138.8 8.8 95 14-118 3-100 (101)
7 cd01519 RHOD_HSP67B2 Member of 99.9 1.1E-24 2.5E-29 138.7 8.5 102 16-119 2-106 (106)
8 TIGR03865 PQQ_CXXCW PQQ-depend 99.9 9.9E-24 2.1E-28 144.1 11.6 117 6-124 29-162 (162)
9 cd01534 4RHOD_Repeat_3 Member 99.9 5.8E-24 1.3E-28 133.3 9.4 90 15-118 1-94 (95)
10 cd01520 RHOD_YbbB Member of th 99.9 1.5E-23 3.3E-28 138.1 9.6 102 15-119 1-126 (128)
11 cd01528 RHOD_2 Member of the R 99.9 3.7E-23 7.9E-28 130.9 10.2 93 15-120 2-99 (101)
12 cd01523 RHOD_Lact_B Member of 99.9 2.1E-23 4.5E-28 131.8 9.0 94 15-118 1-99 (100)
13 cd01521 RHOD_PspE2 Member of t 99.9 5.5E-23 1.2E-27 132.1 10.8 99 12-124 7-110 (110)
14 cd01524 RHOD_Pyr_redox Member 99.9 4.5E-23 9.8E-28 128.0 9.6 89 15-118 1-89 (90)
15 cd01526 RHOD_ThiF Member of th 99.9 5.2E-23 1.1E-27 134.5 9.4 108 10-123 5-117 (122)
16 cd01444 GlpE_ST GlpE sulfurtra 99.9 1.3E-22 2.7E-27 127.0 9.9 91 14-118 1-95 (96)
17 cd01448 TST_Repeat_1 Thiosulfa 99.9 1.3E-22 2.8E-27 132.4 10.2 105 15-121 2-122 (122)
18 cd01522 RHOD_1 Member of the R 99.9 9.4E-23 2E-27 132.5 9.0 103 15-121 1-106 (117)
19 cd01449 TST_Repeat_2 Thiosulfa 99.9 1.7E-22 3.6E-27 131.0 9.6 103 15-119 1-118 (118)
20 cd01447 Polysulfide_ST Polysul 99.9 1.7E-22 3.7E-27 127.9 8.9 101 15-121 1-103 (103)
21 cd01530 Cdc25 Cdc25 phosphatas 99.9 2.4E-22 5.1E-27 131.3 9.6 94 13-118 2-120 (121)
22 cd01525 RHOD_Kc Member of the 99.9 2.7E-22 5.8E-27 127.6 9.4 100 15-118 1-104 (105)
23 PRK08762 molybdopterin biosynt 99.9 4.3E-22 9.2E-27 152.2 11.5 104 12-128 2-106 (376)
24 cd01535 4RHOD_Repeat_4 Member 99.9 6.2E-22 1.3E-26 133.0 10.9 97 20-130 2-100 (145)
25 smart00450 RHOD Rhodanese Homo 99.9 8.8E-22 1.9E-26 122.9 10.0 95 27-123 4-100 (100)
26 PF00581 Rhodanese: Rhodanese- 99.9 7.7E-22 1.7E-26 126.2 9.7 102 16-119 1-112 (113)
27 PRK11493 sseA 3-mercaptopyruva 99.9 4.3E-21 9.2E-26 141.6 11.7 114 13-128 5-137 (281)
28 cd01445 TST_Repeats Thiosulfat 99.9 3.9E-21 8.5E-26 128.2 10.0 102 15-118 1-137 (138)
29 PRK01415 hypothetical protein; 99.9 3.4E-21 7.4E-26 138.8 10.2 101 11-121 110-213 (247)
30 PLN02723 3-mercaptopyruvate su 99.9 7.8E-21 1.7E-25 142.5 12.1 114 13-128 22-153 (320)
31 PLN02723 3-mercaptopyruvate su 99.9 8.3E-21 1.8E-25 142.3 11.6 113 13-127 190-318 (320)
32 PRK09629 bifunctional thiosulf 99.9 8.6E-21 1.9E-25 152.1 12.2 114 13-128 9-131 (610)
33 cd01529 4RHOD_Repeats Member o 99.8 2.8E-21 6.1E-26 121.2 7.3 84 27-118 12-95 (96)
34 PRK11493 sseA 3-mercaptopyruva 99.8 1E-20 2.2E-25 139.6 11.1 113 13-127 153-280 (281)
35 cd01532 4RHOD_Repeat_1 Member 99.8 9.3E-21 2E-25 118.1 8.5 80 27-119 10-92 (92)
36 PRK05320 rhodanese superfamily 99.8 1.2E-20 2.6E-25 137.3 10.2 100 11-120 108-216 (257)
37 TIGR02981 phageshock_pspE phag 99.8 1.6E-20 3.4E-25 119.0 8.7 79 27-119 18-97 (101)
38 cd01531 Acr2p Eukaryotic arsen 99.8 1.1E-20 2.5E-25 121.8 8.1 97 13-120 2-112 (113)
39 PRK10287 thiosulfate:cyanide s 99.8 2.2E-20 4.9E-25 118.8 8.6 78 28-119 21-99 (104)
40 PRK00142 putative rhodanese-re 99.8 2.8E-20 6E-25 138.9 10.0 101 10-120 109-212 (314)
41 COG0607 PspE Rhodanese-related 99.8 5.5E-20 1.2E-24 117.4 9.6 87 27-126 20-108 (110)
42 COG2897 SseA Rhodanese-related 99.8 8.5E-20 1.8E-24 133.8 11.6 117 10-128 153-284 (285)
43 cd01443 Cdc25_Acr2p Cdc25 enzy 99.8 2.6E-20 5.6E-25 120.2 7.7 92 13-118 2-112 (113)
44 cd00158 RHOD Rhodanese Homolog 99.8 3E-20 6.6E-25 114.1 7.7 80 26-118 9-89 (89)
45 PRK09629 bifunctional thiosulf 99.8 1.2E-19 2.6E-24 145.5 11.2 114 13-128 147-273 (610)
46 PRK07878 molybdopterin biosynt 99.8 1.5E-19 3.2E-24 138.8 9.7 102 10-123 284-387 (392)
47 COG2897 SseA Rhodanese-related 99.8 4.5E-18 9.8E-23 124.8 12.5 118 10-129 8-141 (285)
48 PRK11784 tRNA 2-selenouridine 99.8 9.4E-19 2E-23 132.0 9.1 108 16-126 4-135 (345)
49 PRK07411 hypothetical protein; 99.8 1.4E-18 3E-23 133.3 9.5 104 10-123 279-385 (390)
50 PRK05597 molybdopterin biosynt 99.8 1.2E-18 2.6E-23 132.2 8.8 95 11-119 259-354 (355)
51 TIGR03167 tRNA_sel_U_synt tRNA 99.8 2.3E-18 5E-23 128.3 8.7 97 28-127 3-122 (311)
52 cd01446 DSP_MapKP N-terminal r 99.7 2.6E-17 5.7E-22 108.8 8.7 103 14-120 1-127 (132)
53 PRK05600 thiamine biosynthesis 99.7 9.7E-17 2.1E-21 122.3 7.2 94 13-115 271-369 (370)
54 COG1054 Predicted sulfurtransf 99.6 1.5E-15 3.2E-20 110.7 6.1 99 12-120 112-213 (308)
55 PRK01269 tRNA s(4)U8 sulfurtra 99.6 1.4E-14 2.9E-19 114.1 8.3 81 17-111 397-481 (482)
56 KOG1529 Mercaptopyruvate sulfu 99.4 1.6E-12 3.4E-17 94.5 10.5 117 13-129 5-139 (286)
57 KOG3772 M-phase inducer phosph 99.4 1.3E-12 2.8E-17 96.6 6.9 101 8-121 151-277 (325)
58 KOG2017 Molybdopterin synthase 99.3 3.9E-12 8.4E-17 94.7 6.3 104 10-122 314-421 (427)
59 KOG1529 Mercaptopyruvate sulfu 99.2 1.6E-10 3.6E-15 84.0 7.8 90 27-119 172-275 (286)
60 COG5105 MIH1 Mitotic inducer, 98.9 5.4E-09 1.2E-13 77.3 7.1 103 5-120 234-358 (427)
61 TIGR01244 conserved hypothetic 98.2 1.8E-05 3.9E-10 52.5 8.3 88 13-105 13-113 (135)
62 PF04273 DUF442: Putative phos 98.1 1.6E-05 3.6E-10 50.9 6.8 83 13-100 13-107 (110)
63 COG2603 Predicted ATPase [Gene 98.0 5.5E-06 1.2E-10 61.0 3.3 100 16-118 4-127 (334)
64 KOG1093 Predicted protein kina 97.4 2.8E-05 6E-10 62.0 -0.4 102 8-117 617-718 (725)
65 PF13350 Y_phosphatase3: Tyros 97.3 0.0019 4E-08 44.0 7.3 95 12-106 27-153 (164)
66 PRK00142 putative rhodanese-re 96.7 0.00019 4.1E-09 54.1 -1.9 81 15-108 16-105 (314)
67 cd00127 DSPc Dual specificity 96.5 0.0087 1.9E-07 39.1 5.3 79 25-104 25-109 (139)
68 PLN02727 NAD kinase 96.1 0.019 4.2E-07 48.7 6.2 85 11-100 265-364 (986)
69 COG3453 Uncharacterized protei 95.9 0.039 8.3E-07 35.8 5.6 82 12-100 13-108 (130)
70 KOG3636 Uncharacterized conser 95.5 0.041 8.9E-07 43.4 5.6 101 13-119 307-428 (669)
71 smart00195 DSPc Dual specifici 94.8 0.09 2E-06 34.4 5.2 79 24-105 23-107 (138)
72 TIGR03167 tRNA_sel_U_synt tRNA 94.4 0.26 5.6E-06 37.3 7.2 65 12-90 135-207 (311)
73 KOG1717 Dual specificity phosp 93.7 0.039 8.5E-07 40.7 1.7 95 14-120 5-124 (343)
74 PTZ00242 protein tyrosine phos 92.4 1 2.2E-05 30.8 7.0 82 19-103 31-124 (166)
75 PRK12361 hypothetical protein; 92.3 0.33 7.2E-06 39.3 5.2 82 17-101 110-199 (547)
76 PF05706 CDKN3: Cyclin-depende 91.7 0.66 1.4E-05 31.9 5.4 84 20-103 64-159 (168)
77 PF00782 DSPc: Dual specificit 91.2 0.28 6E-06 31.7 3.1 78 28-105 20-102 (133)
78 PTZ00393 protein tyrosine phos 91.1 2.1 4.6E-05 31.2 7.8 71 28-105 118-198 (241)
79 PF13344 Hydrolase_6: Haloacid 91.0 0.79 1.7E-05 28.6 4.9 37 66-105 20-57 (101)
80 PF01451 LMWPc: Low molecular 90.0 0.21 4.5E-06 32.8 1.7 36 82-117 1-41 (138)
81 smart00226 LMWPc Low molecular 89.4 0.45 9.9E-06 31.2 3.0 36 82-117 1-37 (140)
82 COG2453 CDC14 Predicted protei 89.4 0.75 1.6E-05 31.8 4.2 29 67-95 93-122 (180)
83 PF09992 DUF2233: Predicted pe 88.5 0.64 1.4E-05 31.6 3.3 42 76-117 97-143 (170)
84 PF03853 YjeF_N: YjeF-related 88.3 1.8 3.9E-05 29.6 5.5 32 77-109 23-57 (169)
85 TIGR02689 ars_reduc_gluta arse 86.2 1.4 3E-05 28.6 3.8 34 81-114 2-36 (126)
86 PRK10126 tyrosine phosphatase; 85.6 1.1 2.3E-05 30.0 3.1 37 80-117 3-40 (147)
87 PRK11391 etp phosphotyrosine-p 83.2 1.6 3.6E-05 29.0 3.2 37 80-117 3-40 (144)
88 COG0062 Uncharacterized conser 82.8 4.7 0.0001 28.7 5.5 31 79-110 49-82 (203)
89 PRK13530 arsenate reductase; P 82.7 2.4 5.2E-05 27.8 3.8 35 80-114 4-39 (133)
90 cd00115 LMWPc Substituted upda 81.8 2 4.4E-05 28.2 3.2 37 81-117 2-40 (141)
91 PF03162 Y_phosphatase2: Tyros 81.5 5.9 0.00013 27.1 5.4 75 28-105 34-119 (164)
92 TIGR00197 yjeF_nterm yjeF N-te 81.2 6 0.00013 28.0 5.6 34 76-110 42-78 (205)
93 PLN03050 pyridoxine (pyridoxam 80.0 3.6 7.7E-05 30.1 4.2 30 80-110 61-93 (246)
94 PF02590 SPOUT_MTase: Predicte 79.3 7 0.00015 26.5 5.2 47 71-117 59-110 (155)
95 TIGR02691 arsC_pI258_fam arsen 77.9 3.3 7.2E-05 27.0 3.2 33 82-114 1-34 (129)
96 PRK10565 putative carbohydrate 77.8 7.3 0.00016 31.6 5.7 33 77-110 58-93 (508)
97 COG0647 NagD Predicted sugar p 77.4 7.5 0.00016 28.9 5.2 32 67-101 31-63 (269)
98 PRK10310 PTS system galactitol 77.0 7.8 0.00017 23.8 4.5 38 81-119 4-46 (94)
99 PLN03049 pyridoxine (pyridoxam 75.8 9 0.00019 30.7 5.6 30 80-110 60-92 (462)
100 TIGR00853 pts-lac PTS system, 75.8 4.5 9.7E-05 25.0 3.2 38 79-117 3-44 (95)
101 COG0394 Wzb Protein-tyrosine-p 74.4 5 0.00011 26.7 3.4 35 80-114 3-38 (139)
102 PLN02918 pyridoxine (pyridoxam 74.3 9.8 0.00021 31.2 5.5 30 80-110 136-168 (544)
103 TIGR00201 comF comF family pro 73.8 6.1 0.00013 27.4 3.8 33 78-110 151-186 (190)
104 PF00218 IGPS: Indole-3-glycer 73.2 5.8 0.00013 29.2 3.7 89 15-107 142-235 (254)
105 PRK00103 rRNA large subunit me 73.2 8.6 0.00019 26.1 4.3 47 71-117 59-110 (157)
106 PRK09590 celB cellobiose phosp 73.0 5.1 0.00011 25.3 3.0 37 80-117 2-42 (104)
107 PF14606 Lipase_GDSL_3: GDSL-l 72.8 13 0.00027 26.0 5.1 45 67-112 82-144 (178)
108 KOG0333 U5 snRNP-like RNA heli 72.8 5.4 0.00012 32.6 3.7 37 78-115 516-552 (673)
109 TIGR03372 putres_am_tran putre 72.0 7.3 0.00016 30.9 4.3 53 67-119 121-178 (442)
110 cd00079 HELICc Helicase superf 70.8 19 0.00041 22.4 5.4 37 77-114 26-62 (131)
111 PRK08117 4-aminobutyrate amino 70.4 7.8 0.00017 30.4 4.2 54 67-120 90-145 (433)
112 cd05564 PTS_IIB_chitobiose_lic 70.4 6.6 0.00014 24.2 3.0 36 81-117 1-40 (96)
113 cd05565 PTS_IIB_lactose PTS_II 69.5 6.6 0.00014 24.6 2.9 36 81-117 2-41 (99)
114 PF02302 PTS_IIB: PTS system, 69.3 7.9 0.00017 23.0 3.2 32 81-113 1-37 (90)
115 KOG2882 p-Nitrophenyl phosphat 68.6 22 0.00049 26.9 5.9 52 18-90 13-65 (306)
116 COG0034 PurF Glutamine phospho 67.9 7.5 0.00016 31.0 3.5 37 77-113 346-385 (470)
117 PRK07688 thiamine/molybdopteri 66.9 3.7 8.1E-05 31.4 1.7 36 11-47 275-317 (339)
118 PRK13802 bifunctional indole-3 66.9 40 0.00087 28.6 7.7 89 15-107 144-237 (695)
119 PRK09162 hypoxanthine-guanine 65.8 10 0.00022 26.2 3.6 33 78-110 96-131 (181)
120 PLN02460 indole-3-glycerol-pho 65.8 60 0.0013 25.1 7.9 90 15-107 214-314 (338)
121 PF00156 Pribosyltran: Phospho 65.6 14 0.0003 23.2 4.0 33 77-109 86-121 (125)
122 PRK06148 hypothetical protein; 65.3 12 0.00025 33.1 4.5 54 67-120 667-722 (1013)
123 cd05567 PTS_IIB_mannitol PTS_I 65.2 10 0.00022 22.7 3.1 37 80-117 1-42 (87)
124 PRK10499 PTS system N,N'-diace 65.2 10 0.00023 23.9 3.2 26 80-105 4-33 (106)
125 PRK06917 hypothetical protein; 64.7 15 0.00032 29.2 4.7 53 67-119 78-138 (447)
126 PTZ00110 helicase; Provisional 64.2 19 0.00041 29.4 5.3 37 78-115 376-412 (545)
127 COG2518 Pcm Protein-L-isoaspar 63.9 12 0.00027 26.7 3.7 45 76-120 70-136 (209)
128 COG1576 Uncharacterized conser 63.7 33 0.00071 23.4 5.5 48 68-116 56-108 (155)
129 PRK05298 excinuclease ABC subu 63.2 15 0.00033 30.7 4.7 48 67-115 434-481 (652)
130 PRK07199 phosphoribosylpyropho 63.1 13 0.00027 28.1 3.8 32 78-109 210-244 (301)
131 KOG0572 Glutamine phosphoribos 62.9 12 0.00025 29.5 3.6 33 78-110 355-390 (474)
132 PRK05964 adenosylmethionine--8 62.5 20 0.00043 28.1 5.0 53 67-119 89-149 (423)
133 PRK06916 adenosylmethionine--8 61.0 22 0.00049 28.3 5.1 54 67-120 103-164 (460)
134 PF14572 Pribosyl_synth: Phosp 60.5 16 0.00036 25.5 3.7 33 78-110 82-117 (184)
135 COG2519 GCD14 tRNA(1-methylade 60.3 24 0.00053 26.0 4.7 45 66-110 175-219 (256)
136 cd00133 PTS_IIB PTS_IIB: subun 60.3 13 0.00028 21.2 2.9 25 81-105 1-30 (84)
137 TIGR00640 acid_CoA_mut_C methy 60.0 31 0.00067 22.6 4.9 21 93-113 71-91 (132)
138 PRK11595 DNA utilization prote 60.0 17 0.00036 26.1 3.9 33 78-110 186-221 (227)
139 PF13580 SIS_2: SIS domain; PD 60.0 34 0.00074 22.3 5.2 45 66-111 89-137 (138)
140 TIGR00614 recQ_fam ATP-depende 59.9 24 0.00052 28.1 5.1 37 78-115 225-261 (470)
141 PRK07481 hypothetical protein; 59.5 16 0.00034 29.1 4.0 54 67-120 90-152 (449)
142 COG1040 ComFC Predicted amidop 59.5 15 0.00033 26.4 3.6 31 80-110 185-218 (225)
143 smart00012 PTPc_DSPc Protein t 58.9 28 0.00061 20.7 4.4 17 79-95 39-56 (105)
144 smart00404 PTPc_motif Protein 58.9 28 0.00061 20.7 4.4 17 79-95 39-56 (105)
145 TIGR00631 uvrb excinuclease AB 58.9 22 0.00048 29.8 4.9 48 67-115 430-477 (655)
146 PRK06781 amidophosphoribosyltr 58.7 17 0.00037 29.2 4.1 36 78-113 347-385 (471)
147 cd05563 PTS_IIB_ascorbate PTS_ 58.7 15 0.00033 21.7 3.0 25 81-105 1-30 (86)
148 PRK04837 ATP-dependent RNA hel 58.7 28 0.00061 27.2 5.3 36 78-114 254-289 (423)
149 PRK09246 amidophosphoribosyltr 58.4 17 0.00037 29.4 4.0 35 78-112 357-394 (501)
150 TIGR01459 HAD-SF-IIA-hyp4 HAD- 58.2 40 0.00086 24.1 5.6 28 78-105 39-66 (242)
151 PRK05639 4-aminobutyrate amino 58.1 21 0.00046 28.4 4.5 53 67-119 100-154 (457)
152 PRK14665 mnmA tRNA-specific 2- 58.0 21 0.00045 27.7 4.3 29 77-105 3-31 (360)
153 TIGR01587 cas3_core CRISPR-ass 57.9 23 0.00051 26.7 4.6 39 76-114 219-258 (358)
154 COG4822 CbiK Cobalamin biosynt 57.6 37 0.0008 24.7 5.1 44 66-109 121-172 (265)
155 PRK13809 orotate phosphoribosy 56.7 44 0.00096 23.7 5.5 50 76-125 115-173 (206)
156 PRK11784 tRNA 2-selenouridine 56.6 50 0.0011 25.4 6.2 26 16-41 153-179 (345)
157 PRK07986 adenosylmethionine--8 56.3 24 0.00053 27.8 4.6 53 67-119 90-149 (428)
158 PRK11192 ATP-dependent RNA hel 56.2 33 0.00072 26.8 5.3 37 78-115 244-280 (434)
159 cd05566 PTS_IIB_galactitol PTS 56.2 18 0.00039 21.5 3.1 25 81-105 2-31 (89)
160 PRK06918 4-aminobutyrate amino 56.1 25 0.00054 27.8 4.6 54 67-120 101-157 (451)
161 PF02863 Arg_repressor_C: Argi 56.0 15 0.00033 21.2 2.6 26 76-101 44-69 (70)
162 COG0514 RecQ Superfamily II DN 55.9 12 0.00026 31.0 2.8 37 78-115 229-265 (590)
163 PLN02645 phosphoglycolate phos 55.9 64 0.0014 24.2 6.6 23 13-35 14-37 (311)
164 PRK04923 ribose-phosphate pyro 55.6 22 0.00048 27.1 4.1 32 78-109 216-250 (319)
165 PRK05965 hypothetical protein; 55.6 28 0.0006 27.8 4.8 52 67-118 94-153 (459)
166 PRK13957 indole-3-glycerol-pho 55.5 81 0.0018 23.2 7.2 88 14-106 134-226 (247)
167 COG0513 SrmB Superfamily II DN 55.1 30 0.00066 28.0 5.0 35 80-115 274-308 (513)
168 PRK06105 aminotransferase; Pro 54.8 32 0.0007 27.4 5.0 56 67-122 96-159 (460)
169 PRK00615 glutamate-1-semialdeh 54.5 24 0.00051 28.0 4.2 52 67-118 97-150 (433)
170 PRK13104 secA preprotein trans 54.4 32 0.00069 30.1 5.1 46 70-116 435-480 (896)
171 PRK06149 hypothetical protein; 54.4 23 0.0005 31.1 4.4 52 67-118 628-681 (972)
172 PRK07482 hypothetical protein; 54.2 29 0.00063 27.6 4.7 53 67-119 98-158 (461)
173 PRK02458 ribose-phosphate pyro 54.0 20 0.00043 27.3 3.6 32 78-109 217-251 (323)
174 KOG0332 ATP-dependent RNA heli 53.8 17 0.00036 28.7 3.1 33 82-115 333-365 (477)
175 COG0462 PrsA Phosphoribosylpyr 53.7 27 0.00059 26.6 4.2 31 79-109 214-247 (314)
176 PRK06062 hypothetical protein; 53.5 24 0.00052 28.0 4.1 53 67-119 99-153 (451)
177 PF02780 Transketolase_C: Tran 53.4 25 0.00055 22.3 3.6 29 77-105 7-37 (124)
178 PRK07030 adenosylmethionine--8 53.4 28 0.00061 27.8 4.5 53 67-119 94-154 (466)
179 PRK11776 ATP-dependent RNA hel 53.3 32 0.00068 27.2 4.8 37 78-115 241-277 (460)
180 KOG0685 Flavin-containing amin 53.2 23 0.0005 28.6 3.9 35 78-113 20-54 (498)
181 COG3414 SgaB Phosphotransferas 53.2 25 0.00054 21.7 3.3 26 80-105 2-32 (93)
182 PRK13360 omega amino acid--pyr 52.9 26 0.00057 27.8 4.2 53 67-119 93-153 (442)
183 PLN02482 glutamate-1-semialdeh 52.5 30 0.00065 27.8 4.5 50 68-118 144-195 (474)
184 PRK06082 4-aminobutyrate amino 52.3 26 0.00057 27.9 4.2 53 67-119 117-171 (459)
185 PRK04537 ATP-dependent RNA hel 52.3 23 0.00049 29.2 3.9 38 77-115 255-292 (572)
186 COG1440 CelA Phosphotransferas 52.2 23 0.0005 22.3 3.1 26 80-105 2-31 (102)
187 PRK12898 secA preprotein trans 52.2 42 0.00092 28.3 5.4 37 78-115 472-508 (656)
188 PRK10590 ATP-dependent RNA hel 52.1 36 0.00077 27.0 4.9 37 78-115 244-280 (456)
189 COG0134 TrpC Indole-3-glycerol 52.0 95 0.0021 23.0 7.1 87 15-105 140-231 (254)
190 cd05568 PTS_IIB_bgl_like PTS_I 52.0 21 0.00045 20.8 2.9 21 81-101 2-23 (85)
191 PRK11522 putrescine--2-oxoglut 52.0 24 0.00052 28.2 3.9 53 67-119 128-185 (459)
192 cd03422 YedF YedF is a bacteri 51.9 44 0.00095 19.0 4.6 39 68-108 16-54 (69)
193 TIGR00537 hemK_rel_arch HemK-r 51.7 43 0.00093 22.6 4.7 47 67-113 121-167 (179)
194 PRK02269 ribose-phosphate pyro 51.7 25 0.00055 26.7 3.8 32 78-109 216-250 (320)
195 TIGR00709 dat 2,4-diaminobutyr 51.6 31 0.00067 27.3 4.5 53 67-119 86-143 (442)
196 TIGR00963 secA preprotein tran 51.5 36 0.00078 29.1 5.0 38 76-114 402-439 (745)
197 PF03610 EIIA-man: PTS system 51.5 59 0.0013 20.4 6.1 46 67-112 42-90 (116)
198 PRK11057 ATP-dependent DNA hel 51.2 21 0.00047 29.5 3.6 38 77-115 234-271 (607)
199 KOG1202 Animal-type fatty acid 50.9 1.2E+02 0.0025 28.3 7.9 90 16-125 1720-1824(2376)
200 PRK05769 4-aminobutyrate amino 50.7 35 0.00076 27.0 4.6 53 67-119 101-156 (441)
201 PRK07631 amidophosphoribosyltr 50.5 23 0.00051 28.5 3.6 35 78-112 347-384 (475)
202 PRK06541 hypothetical protein; 50.5 30 0.00065 27.6 4.3 54 67-120 99-160 (460)
203 PRK08360 4-aminobutyrate amino 50.3 31 0.00066 27.4 4.3 52 67-118 88-141 (443)
204 PRK07036 hypothetical protein; 50.3 34 0.00075 27.3 4.6 52 67-118 99-158 (466)
205 PRK07483 hypothetical protein; 50.2 34 0.00074 27.1 4.5 53 67-119 77-137 (443)
206 PRK00278 trpC indole-3-glycero 50.0 1E+02 0.0022 22.6 7.1 88 16-107 145-237 (260)
207 PRK08335 translation initiatio 49.7 75 0.0016 23.7 6.0 14 76-89 107-120 (275)
208 PRK09200 preprotein translocas 49.6 44 0.00095 28.9 5.2 38 77-115 426-463 (790)
209 PRK08593 4-aminobutyrate amino 49.5 34 0.00074 27.1 4.4 53 67-119 89-144 (445)
210 PRK12906 secA preprotein trans 49.4 48 0.001 28.7 5.4 39 76-115 437-475 (796)
211 PRK07678 aminotransferase; Val 49.3 31 0.00066 27.4 4.1 52 67-119 93-152 (451)
212 PRK08297 L-lysine aminotransfe 49.3 32 0.0007 27.2 4.2 54 67-120 96-164 (443)
213 PRK07349 amidophosphoribosyltr 49.2 29 0.00062 28.2 3.9 35 78-112 376-413 (500)
214 COG0160 GabT 4-aminobutyrate a 49.2 38 0.00081 27.2 4.5 58 67-124 103-163 (447)
215 PRK08341 amidophosphoribosyltr 49.2 26 0.00055 28.0 3.6 35 78-112 333-370 (442)
216 PF02254 TrkA_N: TrkA-N domain 49.1 32 0.00069 21.2 3.5 18 84-101 2-19 (116)
217 PF04722 Ssu72: Ssu72-like pro 48.9 35 0.00076 24.1 3.9 29 81-110 3-32 (195)
218 TIGR00700 GABAtrnsam 4-aminobu 48.9 39 0.00084 26.4 4.6 52 67-118 80-134 (420)
219 PRK03092 ribose-phosphate pyro 48.8 30 0.00066 26.1 3.8 44 78-121 200-253 (304)
220 PF04343 DUF488: Protein of un 48.8 17 0.00036 23.3 2.2 22 16-37 1-24 (122)
221 PRK00553 ribose-phosphate pyro 48.6 31 0.00068 26.4 3.9 33 78-110 217-252 (332)
222 PRK08525 amidophosphoribosyltr 48.6 28 0.0006 27.8 3.8 34 78-111 339-375 (445)
223 KOG0330 ATP-dependent RNA heli 48.6 35 0.00077 27.0 4.2 37 78-115 299-335 (476)
224 COG5350 Predicted protein tyro 48.5 20 0.00044 24.5 2.5 23 76-98 90-113 (172)
225 PRK06450 threonine synthase; V 48.2 56 0.0012 25.0 5.3 56 50-105 67-122 (338)
226 COG4992 ArgD Ornithine/acetylo 48.2 41 0.00089 26.6 4.5 48 67-115 88-140 (404)
227 PRK05793 amidophosphoribosyltr 48.0 29 0.00063 27.9 3.8 35 78-112 352-389 (469)
228 PRK00934 ribose-phosphate pyro 47.9 31 0.00068 25.7 3.8 32 78-109 203-237 (285)
229 PF00289 CPSase_L_chain: Carba 47.6 26 0.00056 22.2 2.9 29 83-111 5-33 (110)
230 COG2185 Sbm Methylmalonyl-CoA 47.5 59 0.0013 21.8 4.6 38 77-114 61-102 (143)
231 PRK05638 threonine synthase; V 47.1 56 0.0012 25.9 5.3 56 50-105 82-137 (442)
232 TIGR01090 apt adenine phosphor 47.0 36 0.00079 23.1 3.8 31 77-107 107-140 (169)
233 PF01488 Shikimate_DH: Shikima 47.0 39 0.00084 21.9 3.8 37 78-115 11-47 (135)
234 PF04122 CW_binding_2: Putativ 46.8 32 0.00068 20.7 3.1 35 78-115 49-83 (92)
235 PF14566 PTPlike_phytase: Inos 46.8 22 0.00048 23.7 2.6 47 43-90 89-135 (149)
236 PRK13107 preprotein translocas 46.7 51 0.0011 28.9 5.2 47 69-116 439-485 (908)
237 PF07879 PHB_acc_N: PHB/PHA ac 46.6 31 0.00067 19.8 2.7 29 11-39 16-46 (64)
238 PRK06381 threonine synthase; V 46.6 72 0.0016 23.9 5.6 64 50-113 33-96 (319)
239 PRK08329 threonine synthase; V 46.5 79 0.0017 24.2 5.9 63 50-112 74-136 (347)
240 cd02071 MM_CoA_mut_B12_BD meth 46.5 75 0.0016 20.2 5.3 34 80-113 51-88 (122)
241 PLN02541 uracil phosphoribosyl 46.2 32 0.00068 25.2 3.5 33 77-109 155-192 (244)
242 PRK00121 trmB tRNA (guanine-N( 46.0 55 0.0012 22.8 4.7 48 66-114 136-183 (202)
243 TIGR01091 upp uracil phosphori 45.7 39 0.00084 23.9 3.8 32 78-109 121-155 (207)
244 TIGR01138 cysM cysteine syntha 45.7 58 0.0012 24.2 4.9 64 50-113 25-92 (290)
245 TIGR01203 HGPRTase hypoxanthin 45.6 40 0.00086 22.9 3.8 32 78-109 83-117 (166)
246 COG2117 Predicted subunit of t 45.6 35 0.00077 23.6 3.4 19 87-105 8-26 (198)
247 PRK06058 4-aminobutyrate amino 45.6 51 0.0011 26.0 4.9 52 67-118 103-157 (443)
248 TIGR03714 secA2 accessory Sec 45.6 70 0.0015 27.6 5.8 40 76-116 421-460 (762)
249 PRK06388 amidophosphoribosyltr 45.4 33 0.00071 27.7 3.7 35 78-112 355-392 (474)
250 PF01210 NAD_Gly3P_dh_N: NAD-d 45.3 38 0.00081 22.6 3.6 29 83-112 2-30 (157)
251 PRK06943 adenosylmethionine--8 45.2 41 0.00089 26.8 4.3 52 67-118 101-160 (453)
252 PRK10886 DnaA initiator-associ 45.1 88 0.0019 22.0 5.5 45 67-112 98-144 (196)
253 PRK04192 V-type ATP synthase s 45.0 42 0.00092 27.9 4.3 44 81-125 290-344 (586)
254 TIGR01134 purF amidophosphorib 44.8 39 0.00084 26.9 4.1 35 78-112 337-374 (442)
255 PRK07480 putative aminotransfe 44.5 45 0.00097 26.6 4.4 53 67-119 98-158 (456)
256 PRK06777 4-aminobutyrate amino 44.4 47 0.001 26.0 4.5 54 67-120 87-143 (421)
257 PRK11761 cysM cysteine synthas 44.4 92 0.002 23.2 5.9 62 50-112 29-95 (296)
258 TIGR00246 tRNA_RlmH_YbeA rRNA 44.3 90 0.002 21.1 5.3 44 72-117 59-107 (153)
259 PF00899 ThiF: ThiF family; I 44.1 39 0.00085 21.7 3.4 39 83-121 5-43 (135)
260 PRK08349 hypothetical protein; 44.0 44 0.00096 23.2 3.9 24 82-105 3-26 (198)
261 TIGR01137 cysta_beta cystathio 44.0 62 0.0013 25.5 5.1 65 50-114 28-96 (454)
262 PF03054 tRNA_Me_trans: tRNA m 44.0 34 0.00074 26.5 3.5 25 81-105 2-26 (356)
263 PRK06173 adenosylmethionine--8 43.9 53 0.0011 26.0 4.7 51 67-117 91-149 (429)
264 PRK09427 bifunctional indole-3 43.8 1.5E+02 0.0033 23.8 7.2 89 14-107 142-235 (454)
265 PLN02369 ribose-phosphate pyro 43.6 41 0.0009 25.3 3.9 34 78-111 201-237 (302)
266 PRK02304 adenine phosphoribosy 43.5 52 0.0011 22.4 4.1 31 77-107 112-145 (175)
267 PRK00129 upp uracil phosphorib 43.5 44 0.00096 23.6 3.9 31 78-108 123-156 (209)
268 PF13478 XdhC_C: XdhC Rossmann 43.2 38 0.00083 22.3 3.3 29 83-112 1-29 (136)
269 PRK01297 ATP-dependent RNA hel 43.2 63 0.0014 25.7 5.1 38 78-116 334-371 (475)
270 PRK07495 4-aminobutyrate amino 43.1 51 0.0011 26.0 4.5 53 67-119 87-142 (425)
271 PRK06260 threonine synthase; V 43.1 80 0.0017 24.6 5.5 64 50-113 85-148 (397)
272 PRK07046 aminotransferase; Val 43.1 39 0.00084 26.9 3.8 49 68-118 120-170 (453)
273 PRK09221 beta alanine--pyruvat 43.0 53 0.0011 26.1 4.6 52 67-118 96-155 (445)
274 PRK07322 adenine phosphoribosy 42.9 50 0.0011 22.7 4.0 31 78-108 119-152 (178)
275 KOG1716 Dual specificity phosp 42.6 61 0.0013 24.1 4.7 29 76-104 152-183 (285)
276 TIGR01389 recQ ATP-dependent D 42.2 33 0.00072 28.2 3.4 37 78-115 223-259 (591)
277 PRK13812 orotate phosphoribosy 42.1 1.1E+02 0.0023 21.1 5.5 30 76-105 104-136 (176)
278 PF00102 Y_phosphatase: Protei 42.0 61 0.0013 22.5 4.4 20 77-96 168-188 (235)
279 PRK08197 threonine synthase; V 42.0 94 0.002 24.2 5.8 65 50-114 97-161 (394)
280 PLN02440 amidophosphoribosyltr 42.0 39 0.00084 27.3 3.7 35 78-112 339-376 (479)
281 PRK12904 preprotein translocas 41.7 63 0.0014 28.1 5.0 37 76-113 427-463 (830)
282 COG4671 Predicted glycosyl tra 41.7 37 0.00081 26.5 3.3 35 80-115 10-52 (400)
283 PLN02293 adenine phosphoribosy 41.4 57 0.0012 22.7 4.1 32 76-107 122-156 (187)
284 TIGR00260 thrC threonine synth 41.1 61 0.0013 24.3 4.5 63 50-112 41-103 (328)
285 PRK12389 glutamate-1-semialdeh 41.0 50 0.0011 26.0 4.2 52 67-119 97-150 (428)
286 PRK09792 4-aminobutyrate trans 40.9 59 0.0013 25.5 4.5 53 67-119 87-142 (421)
287 PRK10717 cysteine synthase A; 40.9 1E+02 0.0022 23.3 5.7 65 50-114 30-98 (330)
288 KOG3062 RNA polymerase II elon 40.8 53 0.0012 24.2 3.8 32 81-112 2-39 (281)
289 PRK05630 adenosylmethionine--8 40.6 52 0.0011 25.9 4.2 52 67-118 87-146 (422)
290 PRK11018 hypothetical protein; 40.5 77 0.0017 18.6 5.4 40 67-108 24-63 (78)
291 PRK12548 shikimate 5-dehydroge 40.3 1E+02 0.0022 22.9 5.5 33 79-112 126-158 (289)
292 PRK06931 diaminobutyrate--2-ox 40.3 61 0.0013 25.9 4.5 54 67-120 105-163 (459)
293 KOG2585 Uncharacterized conser 40.2 43 0.00093 26.8 3.5 29 82-110 269-300 (453)
294 PRK05579 bifunctional phosphop 39.8 1.9E+02 0.004 22.9 7.1 25 88-113 213-237 (399)
295 PRK06721 threonine synthase; R 39.8 76 0.0017 24.3 4.9 63 50-112 45-107 (352)
296 KOG1404 Alanine-glyoxylate ami 39.5 1E+02 0.0022 24.5 5.4 50 66-115 95-146 (442)
297 PRK12550 shikimate 5-dehydroge 39.5 1E+02 0.0022 22.9 5.3 45 67-112 109-154 (272)
298 PRK06352 threonine synthase; V 39.5 80 0.0017 24.2 5.0 63 50-112 45-107 (351)
299 PRK05922 type III secretion sy 39.4 1.3E+02 0.0028 24.1 6.2 56 67-123 200-265 (434)
300 PLN03137 ATP-dependent DNA hel 39.4 67 0.0014 29.1 4.9 36 79-115 680-715 (1195)
301 TIGR00824 EIIA-man PTS system, 39.3 92 0.002 19.7 4.5 45 66-112 42-91 (116)
302 KOG0331 ATP-dependent RNA heli 39.3 48 0.001 27.1 3.8 38 77-115 339-376 (519)
303 TIGR01367 pyrE_Therm orotate p 39.3 61 0.0013 22.5 4.0 31 77-107 103-136 (187)
304 TIGR00508 bioA adenosylmethion 39.1 59 0.0013 25.6 4.3 52 67-118 92-151 (427)
305 PTZ00145 phosphoribosylpyropho 39.0 47 0.001 26.6 3.7 33 78-110 334-369 (439)
306 TIGR01136 cysKM cysteine synth 39.0 1.2E+02 0.0027 22.4 5.8 64 50-113 24-91 (299)
307 COG1832 Predicted CoA-binding 38.9 1.1E+02 0.0024 20.5 4.8 36 76-112 13-51 (140)
308 TIGR03844 cysteate_syn cysteat 38.9 94 0.002 24.4 5.3 57 57-113 94-150 (398)
309 PRK06827 phosphoribosylpyropho 38.6 53 0.0011 25.8 3.9 32 78-109 263-297 (382)
310 COG1204 Superfamily II helicas 38.4 1.2E+02 0.0027 26.1 6.3 84 16-101 192-275 (766)
311 PRK02812 ribose-phosphate pyro 38.4 48 0.001 25.4 3.5 34 78-111 229-265 (330)
312 COG0603 Predicted PP-loop supe 38.3 56 0.0012 23.6 3.7 6 100-105 52-57 (222)
313 PRK07847 amidophosphoribosyltr 38.2 53 0.0012 26.8 3.9 35 78-112 366-403 (510)
314 KOG4053 Ataxin-1, involved in 38.2 17 0.00037 25.7 1.0 83 10-104 50-133 (224)
315 KOG0326 ATP-dependent RNA heli 38.1 27 0.00059 27.0 2.2 30 80-110 323-352 (459)
316 PRK12560 adenine phosphoribosy 38.0 1.1E+02 0.0024 21.2 5.1 50 76-125 111-171 (187)
317 PRK14664 tRNA-specific 2-thiou 38.0 67 0.0014 25.0 4.3 27 79-105 5-31 (362)
318 cd06269 PBP1_glutamate_recepto 37.8 1E+02 0.0023 21.7 5.2 38 67-104 183-220 (298)
319 TIGR01251 ribP_PPkin ribose-ph 37.6 55 0.0012 24.6 3.8 33 78-110 209-244 (308)
320 PTZ00424 helicase 45; Provisio 37.6 58 0.0013 24.9 4.0 37 78-115 266-302 (401)
321 PLN02335 anthranilate synthase 37.5 79 0.0017 22.6 4.4 33 78-111 17-49 (222)
322 PLN00011 cysteine synthase 37.4 1.3E+02 0.0029 22.7 5.8 65 50-114 34-103 (323)
323 PRK07272 amidophosphoribosyltr 37.4 54 0.0012 26.6 3.8 35 78-112 349-386 (484)
324 PRK09264 diaminobutyrate--2-ox 37.4 63 0.0014 25.3 4.2 53 67-119 86-144 (425)
325 PLN02760 4-aminobutyrate:pyruv 37.0 76 0.0016 25.8 4.6 55 67-121 137-200 (504)
326 PLN02297 ribose-phosphate pyro 36.9 57 0.0012 25.0 3.7 32 78-109 229-263 (326)
327 cd06446 Trp-synth_B Tryptophan 36.7 93 0.002 24.0 5.0 62 50-111 52-114 (365)
328 COG0169 AroE Shikimate 5-dehyd 36.7 1.2E+02 0.0027 22.7 5.4 33 81-113 127-159 (283)
329 PRK07591 threonine synthase; V 36.6 94 0.002 24.5 5.0 56 50-105 107-162 (421)
330 KOG1150 Predicted molecular ch 36.6 33 0.0007 24.6 2.2 41 35-75 36-77 (250)
331 PRK01259 ribose-phosphate pyro 36.0 57 0.0012 24.7 3.6 33 78-110 207-242 (309)
332 cd01132 F1_ATPase_alpha F1 ATP 35.9 1.1E+02 0.0024 22.9 5.0 29 92-121 149-177 (274)
333 cd01561 CBS_like CBS_like: Thi 35.9 1.4E+02 0.0031 21.9 5.7 64 50-113 19-86 (291)
334 PRK07594 type III secretion sy 35.8 1E+02 0.0022 24.6 5.1 45 79-124 209-264 (433)
335 COG1926 Predicted phosphoribos 35.5 75 0.0016 22.9 3.9 33 78-110 123-158 (220)
336 PF14681 UPRTase: Uracil phosp 35.4 86 0.0019 22.1 4.3 32 78-109 120-156 (207)
337 COG0482 TrmU Predicted tRNA(5- 35.3 73 0.0016 24.8 4.1 28 80-108 4-31 (356)
338 PF03720 UDPG_MGDP_dh_C: UDP-g 35.2 27 0.00058 21.7 1.5 26 10-35 77-102 (106)
339 PRK11634 ATP-dependent RNA hel 35.2 98 0.0021 25.9 5.1 36 78-114 244-279 (629)
340 TIGR02407 ectoine_ectB diamino 35.1 86 0.0019 24.5 4.6 39 81-119 100-140 (412)
341 COG2179 Predicted hydrolase of 35.1 1.6E+02 0.0034 20.5 6.2 38 66-105 49-86 (175)
342 PF00070 Pyr_redox: Pyridine n 35.0 90 0.002 17.9 3.8 23 87-110 6-28 (80)
343 PRK12749 quinate/shikimate deh 34.7 1.4E+02 0.003 22.3 5.5 44 68-112 111-156 (288)
344 KOG1720 Protein tyrosine phosp 34.3 1.3E+02 0.0027 21.8 4.8 38 67-105 136-176 (225)
345 PRK08264 short chain dehydroge 34.2 83 0.0018 21.9 4.1 34 79-112 6-39 (238)
346 COG0698 RpiB Ribose 5-phosphat 34.2 1.5E+02 0.0033 20.1 5.3 30 67-96 45-76 (151)
347 PRK07409 threonine synthase; V 34.1 1.4E+02 0.003 22.8 5.5 64 50-113 48-111 (353)
348 PLN02556 cysteine synthase/L-3 34.1 1.4E+02 0.0031 23.1 5.6 63 50-112 76-143 (368)
349 PRK09123 amidophosphoribosyltr 34.0 69 0.0015 25.9 3.9 34 78-111 359-395 (479)
350 COG2085 Predicted dinucleotide 33.8 1.8E+02 0.0039 20.9 7.2 27 79-105 147-174 (211)
351 PF00072 Response_reg: Respons 33.8 1E+02 0.0022 18.3 4.0 17 94-111 34-50 (112)
352 PRK09280 F0F1 ATP synthase sub 33.7 1.4E+02 0.003 24.2 5.6 32 92-124 225-257 (463)
353 cd01712 ThiI ThiI is required 33.7 82 0.0018 21.2 3.9 18 87-104 7-24 (177)
354 PRK06938 diaminobutyrate--2-ox 33.7 1E+02 0.0022 24.6 4.9 39 83-121 129-170 (464)
355 PF02558 ApbA: Ketopantoate re 33.5 1.1E+02 0.0023 19.8 4.3 43 84-127 2-46 (151)
356 COG0182 Predicted translation 33.4 96 0.0021 23.9 4.4 15 76-90 147-161 (346)
357 PRK12900 secA preprotein trans 33.0 1E+02 0.0023 27.5 5.0 37 76-113 595-631 (1025)
358 PF13399 LytR_C: LytR cell env 32.8 1E+02 0.0022 18.2 3.9 25 81-105 5-31 (90)
359 PRK12549 shikimate 5-dehydroge 32.8 1.6E+02 0.0035 21.8 5.6 34 79-113 127-160 (284)
360 TIGR03246 arg_catab_astC succi 32.5 87 0.0019 24.2 4.3 51 67-119 81-139 (397)
361 PRK01269 tRNA s(4)U8 sulfurtra 32.5 77 0.0017 25.5 4.0 35 79-114 177-213 (482)
362 TIGR03158 cas3_cyano CRISPR-as 32.4 72 0.0016 24.5 3.7 40 78-117 271-311 (357)
363 PF10678 DUF2492: Protein of u 32.4 1.2E+02 0.0025 18.2 4.8 47 66-114 23-69 (78)
364 cd03028 GRX_PICOT_like Glutare 32.4 99 0.0021 18.4 3.7 28 78-105 6-39 (90)
365 PRK01565 thiamine biosynthesis 32.3 95 0.0021 24.3 4.4 28 78-105 175-202 (394)
366 PF04127 DFP: DNA / pantothena 32.3 56 0.0012 22.8 2.8 32 81-113 19-52 (185)
367 PF02534 T4SS-DNA_transf: Type 32.2 90 0.002 24.7 4.4 33 78-111 69-101 (469)
368 PF00202 Aminotran_3: Aminotra 32.2 64 0.0014 24.5 3.4 51 67-117 63-121 (339)
369 KOG0351 ATP-dependent DNA heli 32.1 76 0.0016 28.1 4.1 39 76-115 482-520 (941)
370 PRK12828 short chain dehydroge 32.1 91 0.002 21.5 4.0 31 79-110 7-37 (239)
371 cd01483 E1_enzyme_family Super 32.0 94 0.002 20.1 3.8 34 84-117 3-36 (143)
372 TIGR03251 LAT_fam L-lysine 6-t 32.0 69 0.0015 25.2 3.7 53 68-120 90-157 (431)
373 cd00640 Trp-synth-beta_II Tryp 32.0 1.5E+02 0.0033 21.0 5.2 34 81-114 51-84 (244)
374 TIGR00342 thiazole biosynthesi 31.9 95 0.0021 24.1 4.3 30 78-108 171-200 (371)
375 PF02390 Methyltransf_4: Putat 31.9 1.4E+02 0.003 20.8 4.8 46 67-113 30-75 (195)
376 COG0529 CysC Adenylylsulfate k 31.8 52 0.0011 23.3 2.5 21 92-113 40-60 (197)
377 TIGR01744 XPRTase xanthine pho 31.7 1.8E+02 0.0039 20.3 5.4 50 76-125 114-173 (191)
378 TIGR00268 conserved hypothetic 31.5 1.1E+02 0.0024 22.1 4.5 27 79-105 12-38 (252)
379 PF01118 Semialdhyde_dh: Semia 31.5 82 0.0018 19.9 3.4 35 78-113 65-99 (121)
380 TIGR01415 trpB_rel pyridoxal-p 31.4 2.7E+02 0.0058 22.1 7.8 62 50-111 87-149 (419)
381 TIGR01848 PHA_reg_PhaR polyhyd 31.1 71 0.0015 20.3 2.9 29 11-39 16-46 (107)
382 PRK09620 hypothetical protein; 31.0 86 0.0019 22.6 3.7 32 80-112 18-51 (229)
383 PRK02277 orotate phosphoribosy 30.9 89 0.0019 21.9 3.7 31 77-107 138-171 (200)
384 PRK12381 bifunctional succinyl 30.8 93 0.002 24.2 4.2 51 67-119 85-143 (406)
385 PRK12409 D-amino acid dehydrog 30.6 79 0.0017 24.3 3.7 30 83-113 4-33 (410)
386 PF12146 Hydrolase_4: Putative 30.5 1.2E+02 0.0026 17.8 3.9 31 80-111 16-50 (79)
387 PRK04914 ATP-dependent helicas 30.4 94 0.002 27.6 4.4 37 78-115 492-529 (956)
388 PF01266 DAO: FAD dependent ox 30.4 84 0.0018 23.1 3.8 30 83-113 2-31 (358)
389 cd06366 PBP1_GABAb_receptor Li 30.2 1.4E+02 0.003 22.2 4.9 40 66-105 179-218 (350)
390 KOG1706 Argininosuccinate synt 30.2 65 0.0014 24.8 3.0 32 80-111 6-37 (412)
391 PRK04612 argD acetylornithine 30.2 85 0.0018 24.6 3.9 52 67-119 86-146 (408)
392 COG3980 spsG Spore coat polysa 29.9 93 0.002 23.7 3.7 32 81-113 2-41 (318)
393 PRK04073 rocD ornithine--oxo-a 29.8 95 0.0021 23.9 4.1 50 67-118 86-145 (396)
394 PF13607 Succ_CoA_lig: Succiny 29.6 1.6E+02 0.0034 19.5 4.5 52 62-114 39-91 (138)
395 PRK07233 hypothetical protein; 29.6 80 0.0017 24.2 3.6 27 84-111 3-29 (434)
396 PF13450 NAD_binding_8: NAD(P) 29.5 92 0.002 17.6 3.1 25 87-112 3-27 (68)
397 PRK13811 orotate phosphoribosy 29.5 87 0.0019 21.3 3.4 28 78-105 103-133 (170)
398 cd01134 V_A-ATPase_A V/A-type 29.5 81 0.0018 24.7 3.5 32 92-124 242-273 (369)
399 PRK13937 phosphoheptose isomer 29.5 1.9E+02 0.0042 19.9 5.6 37 75-112 103-141 (188)
400 TIGR03853 matur_matur probable 29.4 1.3E+02 0.0028 17.9 4.5 47 66-114 21-67 (77)
401 cd06448 L-Ser-dehyd Serine deh 29.3 1.6E+02 0.0034 22.2 5.1 65 50-114 18-85 (316)
402 COG1891 Uncharacterized protei 29.3 2.1E+02 0.0045 20.2 6.8 27 12-38 5-31 (235)
403 cd01421 IMPCH Inosine monophos 29.3 1.9E+02 0.0041 20.4 5.0 36 89-126 10-46 (187)
404 cd00047 PTPc Protein tyrosine 29.3 50 0.0011 23.3 2.3 19 78-96 165-184 (231)
405 PRK09496 trkA potassium transp 29.1 1.4E+02 0.0031 23.2 5.0 33 80-113 231-263 (453)
406 COG2513 PrpB PEP phosphonomuta 29.1 1.5E+02 0.0033 22.4 4.8 49 70-123 8-56 (289)
407 PF00733 Asn_synthase: Asparag 29.1 1.8E+02 0.0038 20.4 5.1 41 68-108 6-46 (255)
408 cd06327 PBP1_SBP_like_1 Peripl 29.0 1.4E+02 0.003 22.1 4.8 44 66-109 177-221 (334)
409 cd01424 MGS_CPS_II Methylglyox 28.8 1.5E+02 0.0032 18.3 4.9 31 91-123 14-45 (110)
410 PRK09189 uroporphyrinogen-III 28.7 1.6E+02 0.0036 20.8 4.9 38 67-105 106-143 (240)
411 cd06350 PBP1_GPCR_family_C_lik 28.7 1.7E+02 0.0036 21.7 5.1 45 66-110 204-248 (348)
412 TIGR01042 V-ATPase_V1_A V-type 28.6 1.6E+02 0.0034 24.7 5.1 29 92-121 313-341 (591)
413 PRK12403 putative aminotransfe 28.6 1.2E+02 0.0025 24.3 4.4 55 67-121 102-164 (460)
414 PRK07476 eutB threonine dehydr 28.5 1.5E+02 0.0033 22.3 4.9 56 50-105 36-92 (322)
415 KOG3040 Predicted sugar phosph 28.4 1.8E+02 0.0038 21.3 4.8 20 28-47 9-28 (262)
416 PRK04196 V-type ATP synthase s 28.3 2.1E+02 0.0045 23.1 5.8 30 92-122 227-257 (460)
417 TIGR01043 ATP_syn_A_arch ATP s 28.3 95 0.0021 25.9 3.9 32 92-124 307-338 (578)
418 PF01583 APS_kinase: Adenylyls 28.3 1.1E+02 0.0025 20.7 3.7 21 92-113 19-39 (156)
419 PRK09219 xanthine phosphoribos 28.2 1E+02 0.0022 21.5 3.6 30 76-105 114-146 (189)
420 TIGR01529 argR_whole arginine 28.2 80 0.0017 21.1 3.0 26 76-101 119-144 (146)
421 PLN02238 hypoxanthine phosphor 28.2 1E+02 0.0022 21.4 3.7 31 78-108 96-129 (189)
422 COG0503 Apt Adenine/guanine ph 28.1 1.1E+02 0.0024 21.1 3.8 30 76-105 113-145 (179)
423 PRK09426 methylmalonyl-CoA mut 28.1 95 0.0021 26.5 4.0 38 77-114 631-672 (714)
424 PRK14027 quinate/shikimate deh 28.1 2.1E+02 0.0046 21.3 5.5 45 67-112 113-159 (283)
425 PRK13810 orotate phosphoribosy 28.1 1.3E+02 0.0028 21.0 4.1 50 76-125 119-177 (187)
426 PRK00258 aroE shikimate 5-dehy 27.9 2.1E+02 0.0045 21.0 5.4 35 79-114 123-157 (278)
427 TIGR00365 monothiol glutaredox 27.9 1.3E+02 0.0027 18.4 3.7 28 78-105 10-43 (97)
428 cd01135 V_A-ATPase_B V/A-type 27.9 2E+02 0.0043 21.6 5.2 32 92-124 153-185 (276)
429 COG0162 TyrS Tyrosyl-tRNA synt 27.9 72 0.0016 25.2 3.0 39 81-120 32-80 (401)
430 PRK11070 ssDNA exonuclease Rec 27.9 1.3E+02 0.0028 25.0 4.6 41 67-111 118-158 (575)
431 PRK13938 phosphoheptose isomer 27.8 2.2E+02 0.0047 20.0 5.4 43 69-112 104-148 (196)
432 PRK05205 bifunctional pyrimidi 27.7 1.2E+02 0.0025 20.7 3.8 30 78-107 94-127 (176)
433 PRK12829 short chain dehydroge 27.7 1.2E+02 0.0026 21.4 4.0 33 78-111 10-42 (264)
434 PF02527 GidB: rRNA small subu 27.7 99 0.0022 21.5 3.5 40 77-116 70-109 (184)
435 PLN02565 cysteine synthase 27.6 2.7E+02 0.0059 21.1 6.1 66 50-115 32-102 (322)
436 PRK08742 adenosylmethionine--8 27.6 1.3E+02 0.0029 24.1 4.6 54 67-120 111-177 (472)
437 KOG2862 Alanine-glyoxylate ami 27.5 1.7E+02 0.0037 22.7 4.8 41 69-111 82-122 (385)
438 PHA03169 hypothetical protein; 27.5 80 0.0017 24.8 3.1 43 81-124 368-412 (413)
439 PF02879 PGM_PMM_II: Phosphogl 27.5 1.5E+02 0.0032 18.0 4.3 33 79-112 21-53 (104)
440 PRK06608 threonine dehydratase 27.5 2.1E+02 0.0046 21.8 5.5 67 50-116 40-108 (338)
441 TIGR00713 hemL glutamate-1-sem 27.4 1.1E+02 0.0024 23.8 4.1 51 67-118 92-144 (423)
442 PF08704 GCD14: tRNA methyltra 27.4 79 0.0017 23.2 3.0 45 67-111 126-171 (247)
443 PF15494 SRCR_2: Scavenger rec 27.2 1E+02 0.0022 18.8 3.2 28 79-106 13-40 (98)
444 PRK02106 choline dehydrogenase 27.1 95 0.0021 25.3 3.8 30 83-113 8-38 (560)
445 TIGR01041 ATP_syn_B_arch ATP s 27.0 2E+02 0.0044 23.2 5.4 31 92-123 225-256 (458)
446 COG0001 HemL Glutamate-1-semia 26.9 1.1E+02 0.0025 24.4 4.0 50 67-117 97-148 (432)
447 PRK06895 putative anthranilate 26.9 1.3E+02 0.0028 20.7 4.0 26 80-105 2-27 (190)
448 COG4122 Predicted O-methyltran 26.9 1.8E+02 0.0039 20.9 4.7 41 71-111 76-117 (219)
449 PRK05670 anthranilate synthase 26.9 1.3E+02 0.0029 20.5 4.1 24 82-105 2-25 (189)
450 cd04509 PBP1_ABC_transporter_G 26.8 1.4E+02 0.0029 21.0 4.2 38 67-104 179-216 (299)
451 KOG0029 Amine oxidase [Seconda 26.6 1.2E+02 0.0025 24.8 4.1 29 81-111 17-45 (501)
452 PRK08813 threonine dehydratase 26.6 2.2E+02 0.0047 22.0 5.4 64 50-113 50-114 (349)
453 PRK07414 cob(I)yrinic acid a,c 26.4 1.5E+02 0.0032 20.7 4.1 37 77-113 19-61 (178)
454 TIGR01139 cysK cysteine syntha 26.4 2.6E+02 0.0057 20.6 5.8 65 50-114 23-91 (298)
455 KOG1403 Predicted alanine-glyo 26.4 1.3E+02 0.0028 23.3 4.0 39 78-116 100-140 (452)
456 COG1202 Superfamily II helicas 26.4 2.4E+02 0.0052 24.0 5.7 33 82-115 443-475 (830)
457 TIGR03305 alt_F1F0_F1_bet alte 26.1 1.8E+02 0.0039 23.4 5.0 32 92-124 219-251 (449)
458 TIGR00336 pyrE orotate phospho 26.0 1.4E+02 0.0031 20.2 4.0 51 76-126 105-166 (173)
459 PRK08384 thiamine biosynthesis 26.0 1.4E+02 0.003 23.5 4.3 27 79-105 180-206 (381)
460 COG0035 Upp Uracil phosphoribo 26.0 1.3E+02 0.0029 21.6 3.9 42 78-119 123-173 (210)
461 PRK00414 gmhA phosphoheptose i 26.0 2.3E+02 0.005 19.6 5.6 40 72-112 105-146 (192)
462 TIGR01127 ilvA_1Cterm threonin 25.9 2.2E+02 0.0048 21.9 5.5 65 50-114 17-82 (380)
463 PLN02356 phosphateglycerate ki 25.9 2E+02 0.0044 22.9 5.2 65 50-114 70-138 (423)
464 TIGR03642 cas_csx13 CRISPR-ass 25.9 2E+02 0.0043 18.8 5.7 28 82-109 92-122 (124)
465 PLN02347 GMP synthetase 25.9 2.1E+02 0.0045 23.6 5.5 44 70-114 220-266 (536)
466 cd01078 NAD_bind_H4MPT_DH NADP 25.9 1.4E+02 0.0031 20.4 4.1 33 78-111 27-59 (194)
467 TIGR03590 PseG pseudaminic aci 25.9 2.4E+02 0.0052 20.7 5.5 31 78-111 30-60 (279)
468 PRK09694 helicase Cas3; Provis 25.8 1.4E+02 0.003 26.3 4.6 49 67-115 548-598 (878)
469 PRK06036 translation initiatio 25.8 2.4E+02 0.0052 21.8 5.5 15 76-90 145-159 (339)
470 PF13477 Glyco_trans_4_2: Glyc 25.8 1.4E+02 0.0031 18.7 3.8 27 82-109 2-29 (139)
471 PTZ00363 rab-GDP dissociation 25.7 84 0.0018 25.1 3.1 28 83-111 7-34 (443)
472 PRK03341 arginine repressor; P 25.7 91 0.002 21.5 2.9 27 76-102 138-164 (168)
473 PRK12429 3-hydroxybutyrate deh 25.6 1.3E+02 0.0029 21.0 4.0 10 79-88 28-37 (258)
474 smart00194 PTPc Protein tyrosi 25.6 1.1E+02 0.0023 22.1 3.5 17 79-95 193-210 (258)
475 PRK08198 threonine dehydratase 25.5 2.2E+02 0.0049 22.1 5.5 65 50-114 39-104 (404)
476 KOG1401 Acetylornithine aminot 25.5 1.1E+02 0.0024 24.4 3.6 37 79-115 115-159 (433)
477 cd05212 NAD_bind_m-THF_DH_Cycl 25.4 1.7E+02 0.0036 19.4 4.1 33 78-111 27-59 (140)
478 PRK05500 bifunctional orotidin 25.4 2.4E+02 0.0052 23.0 5.6 50 76-125 390-448 (477)
479 PRK07231 fabG 3-ketoacyl-(acyl 25.2 1.3E+02 0.0029 20.9 3.9 23 82-104 8-30 (251)
480 PRK15083 PTS system mannitol-s 25.2 1.1E+02 0.0024 25.6 3.9 33 79-111 378-415 (639)
481 COG1077 MreB Actin-like ATPase 25.2 3.3E+02 0.0071 21.1 7.0 48 81-128 103-153 (342)
482 PRK05653 fabG 3-ketoacyl-(acyl 25.2 1.4E+02 0.003 20.6 4.0 23 82-104 8-30 (246)
483 PRK04280 arginine repressor; P 25.2 94 0.002 20.9 2.9 26 76-101 121-146 (148)
484 cd00006 PTS_IIA_man PTS_IIA, P 25.1 1.9E+02 0.004 18.3 5.2 45 67-112 42-90 (122)
485 TIGR00420 trmU tRNA (5-methyla 25.1 1.2E+02 0.0026 23.4 3.8 25 81-105 2-26 (352)
486 PF02568 ThiI: Thiamine biosyn 25.1 1.1E+02 0.0023 21.7 3.3 25 81-105 5-29 (197)
487 cd01991 Asn_Synthase_B_C The C 25.1 1.8E+02 0.004 20.7 4.7 29 76-104 12-40 (269)
488 PLN02583 cinnamoyl-CoA reducta 25.0 1.4E+02 0.003 21.9 4.1 32 78-110 5-36 (297)
489 TIGR02189 GlrX-like_plant Glut 25.0 1.6E+02 0.0035 17.9 3.8 28 78-105 6-34 (99)
490 KOG0352 ATP-dependent DNA heli 24.9 72 0.0016 25.9 2.6 45 82-127 258-311 (641)
491 COG0075 Serine-pyruvate aminot 24.9 2.1E+02 0.0045 22.6 5.1 45 67-113 68-112 (383)
492 TIGR02621 cas3_GSU0051 CRISPR- 24.9 1.6E+02 0.0034 25.9 4.7 35 78-115 271-305 (844)
493 cd06340 PBP1_ABC_ligand_bindin 24.8 1.9E+02 0.0041 21.6 4.8 41 66-106 186-226 (347)
494 cd06346 PBP1_ABC_ligand_bindin 24.7 2E+02 0.0043 21.1 4.9 40 66-105 179-218 (312)
495 PRK10696 tRNA 2-thiocytidine b 24.7 2E+02 0.0044 20.9 4.8 26 76-101 26-51 (258)
496 cd01995 ExsB ExsB is a transcr 24.7 1.5E+02 0.0032 19.7 3.9 15 89-103 9-23 (169)
497 PLN02268 probable polyamine ox 24.7 1.1E+02 0.0023 23.9 3.5 27 84-111 4-30 (435)
498 COG2365 Protein tyrosine/serin 24.6 1.5E+02 0.0033 21.6 4.1 38 68-105 124-164 (249)
499 PRK08246 threonine dehydratase 24.6 2.8E+02 0.0062 20.7 5.7 63 50-113 39-101 (310)
500 CHL00101 trpG anthranilate syn 24.5 1.5E+02 0.0032 20.4 3.9 24 82-105 2-25 (190)
No 1
>PLN02160 thiosulfate sulfurtransferase
Probab=99.96 E-value=1.3e-27 Score=159.02 Aligned_cols=121 Identities=57% Similarity=0.966 Sum_probs=103.7
Q ss_pred ceeeeCHHHHHHHhhCCCEEEecCChHHHhccCCCCceeeCccccccCCCCCCCChHHHHHHHhhccCCCcEEEEeCCCc
Q 032621 11 EVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGA 90 (137)
Q Consensus 11 ~~~~is~~~~~~~~~~~~~viDvR~~~e~~~g~ipga~~inip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~ 90 (137)
.++.++++++.+.++.+..|||||++.||..||||||..+|+|+..+.+...+...++...+...++++++||+||++|.
T Consensus 13 ~~~~i~~~e~~~~~~~~~~lIDVR~~~E~~~ghIpgA~~iniP~~~~~~~~~l~~~~~~~~~~~~~~~~~~IivyC~sG~ 92 (136)
T PLN02160 13 EVVSVDVSQAKTLLQSGHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGRVKNQEFLEQVSSLLNPADDILVGCQSGA 92 (136)
T ss_pred eeeEeCHHHHHHHHhCCCEEEECCCHHHHhcCCCCCcceecccchhcCcccccCCHHHHHHHHhccCCCCcEEEECCCcH
Confidence 57899999999999887889999999999999999997778888655444555555666656554578899999999999
Q ss_pred hHHHHHHHHHHCCccceeeccccHHHHHhCCCceecCCCCC
Q 032621 91 RSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAREKPA 131 (137)
Q Consensus 91 ra~~~~~~l~~~G~~~v~~l~GG~~~w~~~~~p~~~~~~~~ 131 (137)
||..++..|...||++|+.|.||+.+|.+.|+|+.+....+
T Consensus 93 RS~~Aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~~ 133 (136)
T PLN02160 93 RSLKATTELVAAGYKKVRNKGGGYLAWVDHSFPINQEEEEP 133 (136)
T ss_pred HHHHHHHHHHHcCCCCeeecCCcHHHHhhCCCCccccccCC
Confidence 99999999999999999999999999999999999865443
No 2
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.95 E-value=4.4e-27 Score=151.41 Aligned_cols=113 Identities=45% Similarity=0.739 Sum_probs=104.8
Q ss_pred CceeeeCHHHHHHHhhCC-CEEEecCChHHHhccCCCCceeeCccccccCCCCCCCChHHHHHHHhh-ccCCCcEEEEeC
Q 032621 10 AEVITVDVRAAKNLLESG-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVVGCQ 87 (137)
Q Consensus 10 ~~~~~is~~~~~~~~~~~-~~viDvR~~~e~~~g~ipga~~inip~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iv~~c~ 87 (137)
..+..++++++.++++.+ .++||||+++||..||+|.+ ||||+....+...+.+++|..+++.. ...+++|||+|.
T Consensus 20 ~~~~sv~~~qvk~L~~~~~~~llDVRepeEfk~gh~~~s--iNiPy~~~~~~~~l~~~eF~kqvg~~kp~~d~eiIf~C~ 97 (136)
T KOG1530|consen 20 SNPQSVSVEQVKNLLQHPDVVLLDVREPEEFKQGHIPAS--INIPYMSRPGAGALKNPEFLKQVGSSKPPHDKEIIFGCA 97 (136)
T ss_pred CCcEEEEHHHHHHHhcCCCEEEEeecCHHHhhccCCcce--EeccccccccccccCCHHHHHHhcccCCCCCCcEEEEec
Confidence 556899999999999998 99999999999999999998 99999888888889999999999988 555669999999
Q ss_pred CCchHHHHHHHHHHCCccceeeccccHHHHHhCCCce
Q 032621 88 SGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKV 124 (137)
Q Consensus 88 ~g~ra~~~~~~l~~~G~~~v~~l~GG~~~w~~~~~p~ 124 (137)
+|.||..|...|...||+||.++.|||.+|.+.++|.
T Consensus 98 SG~Rs~~A~~~l~s~Gyknv~ny~Gs~~~W~~k~~~~ 134 (136)
T KOG1530|consen 98 SGVRSLKATKILVSAGYKNVGNYPGSYLAWVDKGGPK 134 (136)
T ss_pred cCcchhHHHHHHHHcCcccccccCccHHHHHHccCCC
Confidence 9999999999999999999999999999999998875
No 3
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.93 E-value=1.7e-25 Score=143.54 Aligned_cols=100 Identities=22% Similarity=0.391 Sum_probs=86.8
Q ss_pred CCceeeeCHHHHHHHhhCC--CEEEecCChHHHhccCCCCceeeCccccccCCCCCCCChHHHHHHHhh-ccCCCcEEEE
Q 032621 9 GAEVITVDVRAAKNLLESG--YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVVG 85 (137)
Q Consensus 9 ~~~~~~is~~~~~~~~~~~--~~viDvR~~~e~~~g~ipga~~inip~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iv~~ 85 (137)
....+.++++++.+.++++ .+|||||++.||..|||||| +|+|+. ++...+..+ .+++++||+|
T Consensus 6 ~~~~~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpga--inip~~-----------~l~~~~~~l~~~~~~~ivv~ 72 (109)
T cd01533 6 VRHTPSVSADELAALQARGAPLVVLDGRRFDEYRKMTIPGS--VSCPGA-----------ELVLRVGELAPDPRTPIVVN 72 (109)
T ss_pred cccCCcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCc--eeCCHH-----------HHHHHHHhcCCCCCCeEEEE
Confidence 3456789999999998764 58999999999999999999 999995 555566555 3567899999
Q ss_pred eCCCchHHHHHHHHHHCCccc-eeeccccHHHHHhCC
Q 032621 86 CQSGARSLHATADLLGAGFKH-VSNFGGGHMAWVQNG 121 (137)
Q Consensus 86 c~~g~ra~~~~~~l~~~G~~~-v~~l~GG~~~w~~~~ 121 (137)
|++|.||..+++.|+..||++ ++.|+||+.+|...|
T Consensus 73 C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~~W~~~g 109 (109)
T cd01533 73 CAGRTRSIIGAQSLINAGLPNPVAALRNGTQGWTLAG 109 (109)
T ss_pred CCCCchHHHHHHHHHHCCCCcceeEecCCHHHHHhcC
Confidence 999999999999999999988 899999999998764
No 4
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.93 E-value=9e-25 Score=139.94 Aligned_cols=104 Identities=26% Similarity=0.377 Sum_probs=91.9
Q ss_pred CceeeeCHHHHHHHhhC-CCEEEecCChHHHhccCCCCceeeCccccccCCCCCCCChHHHHHHHhhccCCCcEEEEeCC
Q 032621 10 AEVITVDVRAAKNLLES-GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQS 88 (137)
Q Consensus 10 ~~~~~is~~~~~~~~~~-~~~viDvR~~~e~~~g~ipga~~inip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~ 88 (137)
...+.++++++.+.++. +.++||+|++.+|..|||||| +|+|+. .+...+.. ++++++|++||.+
T Consensus 2 ~~~~~is~~el~~~l~~~~~~ivDvR~~~e~~~ghi~gA--~~ip~~-----------~l~~~~~~-~~~~~~ivv~c~~ 67 (108)
T PRK00162 2 DQFECINVEQAHQKLQEGGAVLVDIRDPQSFAMGHAPGA--FHLTND-----------SLGAFMRQ-ADFDTPVMVMCYH 67 (108)
T ss_pred CCccccCHHHHHHHHHcCCCEEEEcCCHHHHhcCCCCCC--eECCHH-----------HHHHHHHh-cCCCCCEEEEeCC
Confidence 35678999999999865 478999999999999999999 999984 55555555 4788999999999
Q ss_pred CchHHHHHHHHHHCCccceeeccccHHHHHhCCCceecC
Q 032621 89 GARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAR 127 (137)
Q Consensus 89 g~ra~~~~~~l~~~G~~~v~~l~GG~~~w~~~~~p~~~~ 127 (137)
|.+|..++..|+..||++|++|+||+.+|...++|++..
T Consensus 68 g~~s~~a~~~L~~~G~~~v~~l~GG~~~w~~~~~~~~~~ 106 (108)
T PRK00162 68 GNSSQGAAQYLLQQGFDVVYSIDGGFEAWRRTFPAEVAS 106 (108)
T ss_pred CCCHHHHHHHHHHCCchheEEecCCHHHHHhcCCCccCC
Confidence 999999999999999999999999999999999998763
No 5
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.92 E-value=7.2e-25 Score=138.20 Aligned_cols=98 Identities=22% Similarity=0.328 Sum_probs=85.3
Q ss_pred eeeCHHHHHHHhhCCCEEEecCChHHHhccCCCCceeeCccccccCCCCCCCChHHHHHHHhhccCCCcEEEEeCCCchH
Q 032621 13 ITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARS 92 (137)
Q Consensus 13 ~~is~~~~~~~~~~~~~viDvR~~~e~~~g~ipga~~inip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~ra 92 (137)
+.|+++++.+.++.+.+|||+|++.+|..|||||| +|+|+..+ ...... ++++++||+||++|.+|
T Consensus 2 ~~i~~~el~~~~~~~~~liDvR~~~e~~~~hi~ga--~~ip~~~~-----------~~~~~~-~~~~~~iv~~c~~g~~s 67 (99)
T cd01527 2 TTISPNDACELLAQGAVLVDIREPDEYLRERIPGA--RLVPLSQL-----------ESEGLP-LVGANAIIFHCRSGMRT 67 (99)
T ss_pred CccCHHHHHHHHHCCCEEEECCCHHHHHhCcCCCC--EECChhHh-----------cccccC-CCCCCcEEEEeCCCchH
Confidence 57899999999988889999999999999999999 99998532 221111 47889999999999999
Q ss_pred HHHHHHHHHCCccceeeccccHHHHHhCCCce
Q 032621 93 LHATADLLGAGFKHVSNFGGGHMAWVQNGLKV 124 (137)
Q Consensus 93 ~~~~~~l~~~G~~~v~~l~GG~~~w~~~~~p~ 124 (137)
..++..|.+.||+++++|+||+.+|...++|+
T Consensus 68 ~~~~~~L~~~g~~~v~~l~gG~~~W~~~~~~~ 99 (99)
T cd01527 68 QQNAERLAAISAGEAYVLEGGLDAWKAAGLPV 99 (99)
T ss_pred HHHHHHHHHcCCccEEEeeCCHHHHHHCcCCC
Confidence 99999999999999999999999999988774
No 6
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.92 E-value=7.2e-25 Score=138.79 Aligned_cols=95 Identities=26% Similarity=0.336 Sum_probs=79.5
Q ss_pred eeCHHHHHHHhhCC-CEEEecCChHHHhccCCCCceeeCccccccCCCCCCCChHHHHHHHhh--ccCCCcEEEEeCCCc
Q 032621 14 TVDVRAAKNLLESG-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL--CKEEDRLVVGCQSGA 90 (137)
Q Consensus 14 ~is~~~~~~~~~~~-~~viDvR~~~e~~~g~ipga~~inip~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iv~~c~~g~ 90 (137)
.|+++++.++++.+ .+|||||++.||..|||||| +|+|+..+. .+...+... .+++++||+||++|.
T Consensus 3 ~is~~~l~~~~~~~~~~iiDvR~~~e~~~ghi~gA--~~ip~~~~~--------~~~~~~~~~~~~~~~~~ivvyC~~G~ 72 (101)
T cd01518 3 YLSPAEWNELLEDPEVVLLDVRNDYEYDIGHFKGA--VNPDVDTFR--------EFPFWLDENLDLLKGKKVLMYCTGGI 72 (101)
T ss_pred cCCHHHHHHHHcCCCEEEEEcCChhhhhcCEeccc--cCCCcccHh--------HhHHHHHhhhhhcCCCEEEEECCCch
Confidence 58899999988764 78999999999999999999 999985321 112222221 368899999999999
Q ss_pred hHHHHHHHHHHCCccceeeccccHHHHH
Q 032621 91 RSLHATADLLGAGFKHVSNFGGGHMAWV 118 (137)
Q Consensus 91 ra~~~~~~l~~~G~~~v~~l~GG~~~w~ 118 (137)
||..++.+|..+||++|++|+||+.+|.
T Consensus 73 rs~~a~~~L~~~G~~~v~~l~GG~~~W~ 100 (101)
T cd01518 73 RCEKASAYLKERGFKNVYQLKGGILKYL 100 (101)
T ss_pred hHHHHHHHHHHhCCcceeeechhHHHHh
Confidence 9999999999999999999999999995
No 7
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.92 E-value=1.1e-24 Score=138.68 Aligned_cols=102 Identities=27% Similarity=0.428 Sum_probs=85.2
Q ss_pred CHHHHHHHhh-C-CCEEEecCChHHHhccCCCCceeeCccccccCCCCCCCChHHHHHHHhh-ccCCCcEEEEeCCCchH
Q 032621 16 DVRAAKNLLE-S-GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVVGCQSGARS 92 (137)
Q Consensus 16 s~~~~~~~~~-~-~~~viDvR~~~e~~~g~ipga~~inip~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iv~~c~~g~ra 92 (137)
|++++.+.++ . +.+|||+|++.+|..|||||| +|+|+..+.....+...+|.+.+... ++++++||+||++|.+|
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIpgA--~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~s 79 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIPGA--INIPLSSLPDALALSEEEFEKKYGFPKPSKDKELIFYCKAGVRS 79 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCCCc--EEechHHhhhhhCCCHHHHHHHhcccCCCCCCeEEEECCCcHHH
Confidence 6788888887 4 488999999999999999999 99998765332233344676666655 56789999999999999
Q ss_pred HHHHHHHHHCCccceeeccccHHHHHh
Q 032621 93 LHATADLLGAGFKHVSNFGGGHMAWVQ 119 (137)
Q Consensus 93 ~~~~~~l~~~G~~~v~~l~GG~~~w~~ 119 (137)
..+++.|..+||++|+.|+||+.+|.+
T Consensus 80 ~~~~~~l~~~G~~~v~~~~Gg~~~W~~ 106 (106)
T cd01519 80 KAAAELARSLGYENVGNYPGSWLDWAA 106 (106)
T ss_pred HHHHHHHHHcCCccceecCCcHHHHcC
Confidence 999999999999999999999999953
No 8
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.91 E-value=9.9e-24 Score=144.13 Aligned_cols=117 Identities=21% Similarity=0.301 Sum_probs=90.3
Q ss_pred CCCCCceeeeCHHHHHHHhhCC-CEEEecCChH----HHhcc---------CCCCceeeCccccccCCCCCCCChHHHHH
Q 032621 6 KSSGAEVITVDVRAAKNLLESG-YGYLDVRTAE----EFKEG---------HVDAAKIFNIPYMFNTPEGRVKNPDFLKK 71 (137)
Q Consensus 6 ~~~~~~~~~is~~~~~~~~~~~-~~viDvR~~~----e~~~g---------~ipga~~inip~~~~~~~~~~~~~~~~~~ 71 (137)
+.+......|+++++.++++++ .+|||||+.. +|..| ||||| +|+|+...........+.|...
T Consensus 29 ~~~~~~~~~vs~~el~~~l~~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGA--v~ip~~~~~~l~~~~~~~~~~~ 106 (162)
T TIGR03865 29 PATLKGARVLDTEAAQALLARGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGS--LWLPNTGYGNLAPAWQAYFRRG 106 (162)
T ss_pred CcccCCccccCHHHHHHHHhCCCcEEEECCCCccccccccccceeccccCCCCCCc--EEecccCCCCCCCchhHHHHHH
Confidence 3455667899999999999875 8899999865 45544 99999 8888632111111111235556
Q ss_pred HHhh--ccCCCcEEEEeCCCc-hHHHHHHHHHHCCccceeeccccHHHHHhCCCce
Q 032621 72 VRSL--CKEEDRLVVGCQSGA-RSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKV 124 (137)
Q Consensus 72 ~~~~--~~~~~~iv~~c~~g~-ra~~~~~~l~~~G~~~v~~l~GG~~~w~~~~~p~ 124 (137)
+... .+++++||+||++|. +|..+++.|+.+||++|++|+||+.+|...|+|+
T Consensus 107 l~~~~~~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG~Pv 162 (162)
T TIGR03865 107 LERATGGDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGWQAAGLPL 162 (162)
T ss_pred HHHhcCCCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHHHHcCCCC
Confidence 6544 368899999999986 8999999999999999999999999999999985
No 9
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.91 E-value=5.8e-24 Score=133.26 Aligned_cols=90 Identities=22% Similarity=0.310 Sum_probs=76.8
Q ss_pred eCHHHHHHHhhCC---CEEEecCChHHHhccCCCCceeeCccccccCCCCCCCChHHHHHHHhh-ccCCCcEEEEeCCCc
Q 032621 15 VDVRAAKNLLESG---YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVVGCQSGA 90 (137)
Q Consensus 15 is~~~~~~~~~~~---~~viDvR~~~e~~~g~ipga~~inip~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iv~~c~~g~ 90 (137)
||++++.++++++ ++|||||++.||..|||||| +|+|+. ++....... ..++++||+||.+|.
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghipga--~~ip~~-----------~l~~~~~~~~~~~~~~iv~~c~~G~ 67 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPGF--RHTPGG-----------QLVQETDHFAPVRGARIVLADDDGV 67 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCCCc--EeCCHH-----------HHHHHHHHhcccCCCeEEEECCCCC
Confidence 5789999998764 67999999999999999999 999984 444443333 235778999999999
Q ss_pred hHHHHHHHHHHCCccceeeccccHHHHH
Q 032621 91 RSLHATADLLGAGFKHVSNFGGGHMAWV 118 (137)
Q Consensus 91 ra~~~~~~l~~~G~~~v~~l~GG~~~w~ 118 (137)
||..++.+|+..||+ |+.|+||+.+|.
T Consensus 68 rs~~aa~~L~~~G~~-v~~l~GG~~~W~ 94 (95)
T cd01534 68 RADMTASWLAQMGWE-VYVLEGGLAAAL 94 (95)
T ss_pred hHHHHHHHHHHcCCE-EEEecCcHHHhc
Confidence 999999999999999 999999999995
No 10
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.90 E-value=1.5e-23 Score=138.14 Aligned_cols=102 Identities=25% Similarity=0.371 Sum_probs=79.8
Q ss_pred eCHHHHHHHhhCCCEEEecCChHHHhccCCCCceeeCccccccCCCCC-------------------C---CChHHHHHH
Q 032621 15 VDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGR-------------------V---KNPDFLKKV 72 (137)
Q Consensus 15 is~~~~~~~~~~~~~viDvR~~~e~~~g~ipga~~inip~~~~~~~~~-------------------~---~~~~~~~~~ 72 (137)
||++++.+.++.+.+|||||++.||..|||||| +|||+........ + ..+++...+
T Consensus 1 ~s~~el~~~l~~~~~iiDvR~~~e~~~ghIpgA--inip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (128)
T cd01520 1 ITAEDLLALRKADGPLIDVRSPKEFFEGHLPGA--INLPLLDDEERALVGTLYKQQGREAAIELGLELVSGKLKRILNEA 78 (128)
T ss_pred CCHHHHHHHHhcCCEEEECCCHHHhccCcCCCc--EEccCCChhHHHHhhhheeccCHHHHHHHHHHHHhhhHHHHHHHH
Confidence 688999999987789999999999999999999 9999853211000 0 001233333
Q ss_pred Hh-hccCCCcEEEEeC-CCchHHHHHHHHHHCCccceeeccccHHHHHh
Q 032621 73 RS-LCKEEDRLVVGCQ-SGARSLHATADLLGAGFKHVSNFGGGHMAWVQ 119 (137)
Q Consensus 73 ~~-~~~~~~~iv~~c~-~g~ra~~~~~~l~~~G~~~v~~l~GG~~~w~~ 119 (137)
.. .++++++||+||+ +|.||..+++.|+.+|| +|++|+||+.+|..
T Consensus 79 ~~~~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~~aw~~ 126 (128)
T cd01520 79 WEARLERDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGYKAYRK 126 (128)
T ss_pred HHhccCCCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcHHHHHh
Confidence 21 2688999999997 68999999999999999 59999999999964
No 11
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.90 E-value=3.7e-23 Score=130.93 Aligned_cols=93 Identities=27% Similarity=0.473 Sum_probs=79.4
Q ss_pred eCHHHHHHHhhCC---CEEEecCChHHHhccCCCCceeeCccccccCCCCCCCChHHHHHHHhh--ccCCCcEEEEeCCC
Q 032621 15 VDVRAAKNLLESG---YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL--CKEEDRLVVGCQSG 89 (137)
Q Consensus 15 is~~~~~~~~~~~---~~viDvR~~~e~~~g~ipga~~inip~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iv~~c~~g 89 (137)
|+++++.+.++.+ .+|||+|+..||..+||||| +|+|+. ++...+... .++++++|+||++|
T Consensus 2 i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~ga--~~ip~~-----------~~~~~~~~~~~~~~~~~vv~~c~~g 68 (101)
T cd01528 2 ISVAELAEWLADEREEPVLIDVREPEELEIAFLPGF--LHLPMS-----------EIPERSKELDSDNPDKDIVVLCHHG 68 (101)
T ss_pred CCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCCCC--EecCHH-----------HHHHHHHHhcccCCCCeEEEEeCCC
Confidence 6889999998864 78999999999999999999 999985 333333333 14588999999999
Q ss_pred chHHHHHHHHHHCCccceeeccccHHHHHhC
Q 032621 90 ARSLHATADLLGAGFKHVSNFGGGHMAWVQN 120 (137)
Q Consensus 90 ~ra~~~~~~l~~~G~~~v~~l~GG~~~w~~~ 120 (137)
.||..++.+|.+.||++|++|+||+.+|.+.
T Consensus 69 ~rs~~~~~~l~~~G~~~v~~l~GG~~~w~~~ 99 (101)
T cd01528 69 GRSMQVAQWLLRQGFENVYNLQGGIDAWSLE 99 (101)
T ss_pred chHHHHHHHHHHcCCccEEEecCCHHHHhhh
Confidence 9999999999999999999999999999653
No 12
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.90 E-value=2.1e-23 Score=131.81 Aligned_cols=94 Identities=24% Similarity=0.385 Sum_probs=78.0
Q ss_pred eCHHHHHHHhhCC--CEEEecCChHHHhccCCCCceeeCccccccCCCCCCCChHH---HHHHHhhccCCCcEEEEeCCC
Q 032621 15 VDVRAAKNLLESG--YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDF---LKKVRSLCKEEDRLVVGCQSG 89 (137)
Q Consensus 15 is~~~~~~~~~~~--~~viDvR~~~e~~~g~ipga~~inip~~~~~~~~~~~~~~~---~~~~~~~~~~~~~iv~~c~~g 89 (137)
|+++++.+.++++ .+|||||++.||..|||||| +|+|+..+.. .+ .......++++++||+||.+|
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga--~~ip~~~~~~-------~~~~~~~~~~~~~~~~~~ivv~C~~G 71 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDGE--NNTPYFDPYF-------DFLEIEEDILDQLPDDQEVTVICAKE 71 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCC--cccccccchH-------HHHHhhHHHHhhCCCCCeEEEEcCCC
Confidence 5789999998774 68999999999999999999 9999852211 11 112223357889999999999
Q ss_pred chHHHHHHHHHHCCccceeeccccHHHHH
Q 032621 90 ARSLHATADLLGAGFKHVSNFGGGHMAWV 118 (137)
Q Consensus 90 ~ra~~~~~~l~~~G~~~v~~l~GG~~~w~ 118 (137)
.||..++..|++.||+ ++.|.||+.+|.
T Consensus 72 ~rs~~aa~~L~~~G~~-~~~l~GG~~~W~ 99 (100)
T cd01523 72 GSSQFVAELLAERGYD-VDYLAGGMKAWS 99 (100)
T ss_pred CcHHHHHHHHHHcCce-eEEeCCcHHhhc
Confidence 9999999999999998 999999999995
No 13
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.90 E-value=5.5e-23 Score=132.10 Aligned_cols=99 Identities=27% Similarity=0.456 Sum_probs=83.9
Q ss_pred eeeeCHHHHHHHhhCC---CEEEecCChHHHhccCCCCceeeCccccccCCCCCCCChHHHHHHHhhccCCCcEEEEeCC
Q 032621 12 VITVDVRAAKNLLESG---YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQS 88 (137)
Q Consensus 12 ~~~is~~~~~~~~~~~---~~viDvR~~~e~~~g~ipga~~inip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~ 88 (137)
...++++++.+.+..+ .+|||+|++.+|..|||||| +|+|.. .+.......++++++||+||++
T Consensus 7 ~~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIpgA--~~ip~~-----------~l~~~~~~~i~~~~~vvvyc~~ 73 (110)
T cd01521 7 AFETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVPGA--INLPHR-----------EICENATAKLDKEKLFVVYCDG 73 (110)
T ss_pred eeecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCCCC--EeCCHH-----------HhhhHhhhcCCCCCeEEEEECC
Confidence 3689999999999753 78999999999999999999 999985 3332222335789999999998
Q ss_pred Cc--hHHHHHHHHHHCCccceeeccccHHHHHhCCCce
Q 032621 89 GA--RSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKV 124 (137)
Q Consensus 89 g~--ra~~~~~~l~~~G~~~v~~l~GG~~~w~~~~~p~ 124 (137)
|. +|..+++.|+.+||+ +++|+||+.+|...|+|+
T Consensus 74 g~~~~s~~~a~~l~~~G~~-v~~l~GG~~~W~~~g~~~ 110 (110)
T cd01521 74 PGCNGATKAALKLAELGFP-VKEMIGGLDWWKREGYAT 110 (110)
T ss_pred CCCchHHHHHHHHHHcCCe-EEEecCCHHHHHHCCCCC
Confidence 74 899999999999996 999999999999998874
No 14
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.90 E-value=4.5e-23 Score=128.00 Aligned_cols=89 Identities=30% Similarity=0.545 Sum_probs=78.9
Q ss_pred eCHHHHHHHhhCCCEEEecCChHHHhccCCCCceeeCccccccCCCCCCCChHHHHHHHhhccCCCcEEEEeCCCchHHH
Q 032621 15 VDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLH 94 (137)
Q Consensus 15 is~~~~~~~~~~~~~viDvR~~~e~~~g~ipga~~inip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~ra~~ 94 (137)
++++++.++++.+.++||+|+.++|..|||||| +|+|+. ++...+.. ++++++||+||++|.++..
T Consensus 1 ~~~~e~~~~~~~~~~iiD~R~~~~~~~~hipgA--~~ip~~-----------~~~~~~~~-~~~~~~vvl~c~~g~~a~~ 66 (90)
T cd01524 1 VQWHELDNYRADGVTLIDVRTPQEFEKGHIKGA--INIPLD-----------ELRDRLNE-LPKDKEIIVYCAVGLRGYI 66 (90)
T ss_pred CCHHHHHHHhcCCCEEEECCCHHHHhcCCCCCC--EeCCHH-----------HHHHHHHh-cCCCCcEEEEcCCChhHHH
Confidence 468899999877789999999999999999999 999985 55555544 4788999999999999999
Q ss_pred HHHHHHHCCccceeeccccHHHHH
Q 032621 95 ATADLLGAGFKHVSNFGGGHMAWV 118 (137)
Q Consensus 95 ~~~~l~~~G~~~v~~l~GG~~~w~ 118 (137)
++..|+..|+ ++++|+||+.+|.
T Consensus 67 ~a~~L~~~G~-~v~~l~GG~~~w~ 89 (90)
T cd01524 67 AARILTQNGF-KVKNLDGGYKTYS 89 (90)
T ss_pred HHHHHHHCCC-CEEEecCCHHHhc
Confidence 9999999999 8999999999995
No 15
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.89 E-value=5.2e-23 Score=134.52 Aligned_cols=108 Identities=24% Similarity=0.315 Sum_probs=85.6
Q ss_pred CceeeeCHHHHHHHhhC--CCEEEecCChHHHhccCCCCceeeCccccccCCCCCCCChHHHH--HHHhhccCCCcEEEE
Q 032621 10 AEVITVDVRAAKNLLES--GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLK--KVRSLCKEEDRLVVG 85 (137)
Q Consensus 10 ~~~~~is~~~~~~~~~~--~~~viDvR~~~e~~~g~ipga~~inip~~~~~~~~~~~~~~~~~--~~~~~~~~~~~iv~~ 85 (137)
+....|+++++.+.+++ +.+|||+|++.||..|||||| +|+|+..+..... .+.. .....++++++||+|
T Consensus 5 ~~~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIpga--i~ip~~~~~~~~~----~~~~~~~~~~~~~~~~~ivv~ 78 (122)
T cd01526 5 SPEERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPEA--INIPLSELLSKAA----ELKSLQELPLDNDKDSPIYVV 78 (122)
T ss_pred CcccccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCCCC--eEccHHHHhhhhh----hhhhhhhcccccCCCCcEEEE
Confidence 44678999999999876 378999999999999999999 9999864321100 0000 001125788999999
Q ss_pred eCCCchHHHHHHHHHHCCc-cceeeccccHHHHHhCCCc
Q 032621 86 CQSGARSLHATADLLGAGF-KHVSNFGGGHMAWVQNGLK 123 (137)
Q Consensus 86 c~~g~ra~~~~~~l~~~G~-~~v~~l~GG~~~w~~~~~p 123 (137)
|++|.||..++..|.+.|| ++++.|+||+.+|.....+
T Consensus 79 C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~~~ 117 (122)
T cd01526 79 CRRGNDSQTAVRKLKELGLERFVRDIIGGLKAWADKVDP 117 (122)
T ss_pred CCCCCcHHHHHHHHHHcCCccceeeecchHHHHHHHhCc
Confidence 9999999999999999999 7899999999999877554
No 16
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.89 E-value=1.3e-22 Score=127.00 Aligned_cols=91 Identities=25% Similarity=0.404 Sum_probs=80.4
Q ss_pred eeCHHHHHHHhhC--CCEEEecCChHHHhc--cCCCCceeeCccccccCCCCCCCChHHHHHHHhhccCCCcEEEEeCCC
Q 032621 14 TVDVRAAKNLLES--GYGYLDVRTAEEFKE--GHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSG 89 (137)
Q Consensus 14 ~is~~~~~~~~~~--~~~viDvR~~~e~~~--g~ipga~~inip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g 89 (137)
.|+++++.+.++. +.+|||+|++.+|.. |||||| +|+|+. ++...+.. ++++++||+||.+|
T Consensus 1 ~i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~ga--~~ip~~-----------~~~~~~~~-~~~~~~ivv~c~~g 66 (96)
T cd01444 1 RISVDELAELLAAGEAPVLLDVRDPASYAALPDHIPGA--IHLDED-----------SLDDWLGD-LDRDRPVVVYCYHG 66 (96)
T ss_pred CcCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCCC--eeCCHH-----------HHHHHHhh-cCCCCCEEEEeCCC
Confidence 3688999998876 389999999999999 999999 999985 45555544 47899999999999
Q ss_pred chHHHHHHHHHHCCccceeeccccHHHHH
Q 032621 90 ARSLHATADLLGAGFKHVSNFGGGHMAWV 118 (137)
Q Consensus 90 ~ra~~~~~~l~~~G~~~v~~l~GG~~~w~ 118 (137)
.+|..+++.|+..||++|++|+||+.+|.
T Consensus 67 ~~s~~a~~~l~~~G~~~v~~l~gG~~~w~ 95 (96)
T cd01444 67 NSSAQLAQALREAGFTDVRSLAGGFEAWR 95 (96)
T ss_pred ChHHHHHHHHHHcCCceEEEcCCCHHHhc
Confidence 99999999999999999999999999995
No 17
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.89 E-value=1.3e-22 Score=132.40 Aligned_cols=105 Identities=25% Similarity=0.272 Sum_probs=86.8
Q ss_pred eCHHHHHHHhhC-CCEEEecCCh-------HHHhccCCCCceeeCccccccCC-----CCCCC-ChHHHHHHHhh-ccCC
Q 032621 15 VDVRAAKNLLES-GYGYLDVRTA-------EEFKEGHVDAAKIFNIPYMFNTP-----EGRVK-NPDFLKKVRSL-CKEE 79 (137)
Q Consensus 15 is~~~~~~~~~~-~~~viDvR~~-------~e~~~g~ipga~~inip~~~~~~-----~~~~~-~~~~~~~~~~~-~~~~ 79 (137)
++++++.+++++ +.+|||+|++ .+|..|||||| +|+|+..+.. .+.+. ..++.+.+... ++++
T Consensus 2 i~~~~l~~~l~~~~~~ivDvR~~~~~~~~~~~~~~ghI~ga--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (122)
T cd01448 2 VSPDWLAEHLDDPDVRILDARWYLPDRDGRKEYLEGHIPGA--VFFDLDEDLDDKSPGPHMLPSPEEFAELLGSLGISND 79 (122)
T ss_pred cCHHHHHHHhCCCCeEEEEeecCCCCCchhhHHhhCCCCCC--EEcChhhccccCCCCCCCCCCHHHHHHHHHHcCCCCC
Confidence 688999999887 4789999999 99999999999 9999865422 22232 34566666554 6789
Q ss_pred CcEEEEeCC-CchHHHHHHHHHHCCccceeeccccHHHHHhCC
Q 032621 80 DRLVVGCQS-GARSLHATADLLGAGFKHVSNFGGGHMAWVQNG 121 (137)
Q Consensus 80 ~~iv~~c~~-g~ra~~~~~~l~~~G~~~v~~l~GG~~~w~~~~ 121 (137)
++||+||++ |.+|..+++.|+..||++|++|+||+.+|.+.|
T Consensus 80 ~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g 122 (122)
T cd01448 80 DTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQAWKAEG 122 (122)
T ss_pred CEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHhCc
Confidence 999999999 589999999999999999999999999998754
No 18
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.89 E-value=9.4e-23 Score=132.46 Aligned_cols=103 Identities=27% Similarity=0.377 Sum_probs=86.1
Q ss_pred eCHHHHHHHhhC--CCEEEecCChHHHh-ccCCCCceeeCccccccCCCCCCCChHHHHHHHhhccCCCcEEEEeCCCch
Q 032621 15 VDVRAAKNLLES--GYGYLDVRTAEEFK-EGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGAR 91 (137)
Q Consensus 15 is~~~~~~~~~~--~~~viDvR~~~e~~-~g~ipga~~inip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~r 91 (137)
||++++.+++++ +.+|||||++.||. .|||||| +|+|+..+... .....+...+....+++++||+||++|.+
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA--~~ip~~~~~~~--~~~~~~~~~l~~~~~~~~~ivv~C~~G~r 76 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDA--VHVAWQVYPDM--EINPNFLAELEEKVGKDRPVLLLCRSGNR 76 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCc--eecchhhcccc--ccCHHHHHHHHhhCCCCCeEEEEcCCCcc
Confidence 578999999977 48899999999999 9999999 99998654221 11235666666555788999999999999
Q ss_pred HHHHHHHHHHCCccceeeccccHHHHHhCC
Q 032621 92 SLHATADLLGAGFKHVSNFGGGHMAWVQNG 121 (137)
Q Consensus 92 a~~~~~~l~~~G~~~v~~l~GG~~~w~~~~ 121 (137)
|..++..|...||++++.+.||+.+|....
T Consensus 77 s~~aa~~L~~~G~~~v~~l~gG~~~~~~~~ 106 (117)
T cd01522 77 SIAAAEAAAQAGFTNVYNVLEGFEGDLDAA 106 (117)
T ss_pred HHHHHHHHHHCCCCeEEECcCceecCCCCC
Confidence 999999999999999999999999997653
No 19
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.89 E-value=1.7e-22 Score=131.05 Aligned_cols=103 Identities=26% Similarity=0.439 Sum_probs=83.3
Q ss_pred eCHHHHHHHhhCC-CEEEecCChHHHhc-----------cCCCCceeeCccccccCC-CCCCCC-hHHHHHHHhh-ccCC
Q 032621 15 VDVRAAKNLLESG-YGYLDVRTAEEFKE-----------GHVDAAKIFNIPYMFNTP-EGRVKN-PDFLKKVRSL-CKEE 79 (137)
Q Consensus 15 is~~~~~~~~~~~-~~viDvR~~~e~~~-----------g~ipga~~inip~~~~~~-~~~~~~-~~~~~~~~~~-~~~~ 79 (137)
++++++.++++.+ .+|||+|+..||.. |||||| +|+|+..+.. ...+.. .++.+.+... ++++
T Consensus 1 ~s~~~l~~~l~~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (118)
T cd01449 1 VTAEEVLANLDSGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGA--VNIPWTSLLDEDGTFKSPEELRALFAALGITPD 78 (118)
T ss_pred CCHHHHHHhcCCCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCC--cccChHHhcCCCCCcCCHHHHHHHHHHcCCCCC
Confidence 4788898888654 89999999999987 999999 9999865422 122222 3444555554 6789
Q ss_pred CcEEEEeCCCchHHHHHHHHHHCCccceeeccccHHHHHh
Q 032621 80 DRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQ 119 (137)
Q Consensus 80 ~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~~~w~~ 119 (137)
++||+||++|.+|..+++.|+.+||+++++|+||+.+|.+
T Consensus 79 ~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~~ 118 (118)
T cd01449 79 KPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSWSEWGS 118 (118)
T ss_pred CCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHHHhcC
Confidence 9999999999999999999999999999999999999963
No 20
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.88 E-value=1.7e-22 Score=127.88 Aligned_cols=101 Identities=30% Similarity=0.433 Sum_probs=78.3
Q ss_pred eCHHHHHHHhhC-CCEEEecCChHHH-hccCCCCceeeCccccccCCCCCCCChHHHHHHHhhccCCCcEEEEeCCCchH
Q 032621 15 VDVRAAKNLLES-GYGYLDVRTAEEF-KEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARS 92 (137)
Q Consensus 15 is~~~~~~~~~~-~~~viDvR~~~e~-~~g~ipga~~inip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~ra 92 (137)
|+++++.+.+++ +.+|||+|++.+| ..|||||| +|+|+..+....... ..+ ....++++++||+||++|.+|
T Consensus 1 is~~el~~~~~~~~~~iiDvR~~~~~~~~ghIpga--~~ip~~~~~~~~~~~-~~~---~~~~~~~~~~ivv~c~~g~~s 74 (103)
T cd01447 1 LSPEDARALLGSPGVLLVDVRDPRELERTGMIPGA--FHAPRGMLEFWADPD-SPY---HKPAFAEDKPFVFYCASGWRS 74 (103)
T ss_pred CCHHHHHHHHhCCCeEEEECCCHHHHHhcCCCCCc--EEcccchhhhhcCcc-ccc---cccCCCCCCeEEEEcCCCCcH
Confidence 578899998875 4889999999998 57999999 999975332110000 000 011257889999999999999
Q ss_pred HHHHHHHHHCCccceeeccccHHHHHhCC
Q 032621 93 LHATADLLGAGFKHVSNFGGGHMAWVQNG 121 (137)
Q Consensus 93 ~~~~~~l~~~G~~~v~~l~GG~~~w~~~~ 121 (137)
..+++.|...||++|+.|+||+.+|...|
T Consensus 75 ~~~~~~l~~~G~~~v~~l~Gg~~~w~~~g 103 (103)
T cd01447 75 ALAGKTLQDMGLKPVYNIEGGFKDWKEAG 103 (103)
T ss_pred HHHHHHHHHcChHHhEeecCcHHHHhhcC
Confidence 99999999999999999999999997653
No 21
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.88 E-value=2.4e-22 Score=131.32 Aligned_cols=94 Identities=19% Similarity=0.302 Sum_probs=78.6
Q ss_pred eeeCHHHHHHHhhC-------CCEEEecCChHHHhccCCCCceeeCccccccCCCCCCCChHHHHHHHh----h-ccCCC
Q 032621 13 ITVDVRAAKNLLES-------GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRS----L-CKEED 80 (137)
Q Consensus 13 ~~is~~~~~~~~~~-------~~~viDvR~~~e~~~g~ipga~~inip~~~~~~~~~~~~~~~~~~~~~----~-~~~~~ 80 (137)
..|+++++.+++.+ +.+|||||++.||..|||||| +|+|.. ..+...+.. . +++++
T Consensus 2 ~~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA--~~ip~~----------~~l~~~~~~~~~~~~~~~~~ 69 (121)
T cd01530 2 KRISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGA--VNLSTK----------DELEEFFLDKPGVASKKKRR 69 (121)
T ss_pred CccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCC--EeCCcH----------HHHHHHHHHhhcccccCCCC
Confidence 46899999999875 368999999999999999999 999984 123333322 1 57889
Q ss_pred cEEEEeC-CCchHHHHHHHHHHC------------CccceeeccccHHHHH
Q 032621 81 RLVVGCQ-SGARSLHATADLLGA------------GFKHVSNFGGGHMAWV 118 (137)
Q Consensus 81 ~iv~~c~-~g~ra~~~~~~l~~~------------G~~~v~~l~GG~~~w~ 118 (137)
+||+||. +|.||..+++.|+.. ||.+|++|+||+.+|.
T Consensus 70 ~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~ 120 (121)
T cd01530 70 VLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF 120 (121)
T ss_pred EEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence 9999997 999999999999985 9999999999999983
No 22
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.88 E-value=2.7e-22 Score=127.58 Aligned_cols=100 Identities=21% Similarity=0.361 Sum_probs=77.6
Q ss_pred eCHHHHHHHhhC---CCEEEecCChHHHhccCCCCceeeCccccccCCC-CCCCChHHHHHHHhhccCCCcEEEEeCCCc
Q 032621 15 VDVRAAKNLLES---GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPE-GRVKNPDFLKKVRSLCKEEDRLVVGCQSGA 90 (137)
Q Consensus 15 is~~~~~~~~~~---~~~viDvR~~~e~~~g~ipga~~inip~~~~~~~-~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~ 90 (137)
||++++.+++++ +.+|||||++.||..|||||| +|+|+..+... ..+..-....++.. ..+++||+||.+|.
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIpgA--~~ip~~~~~~~~~~~~~~~~~~~~~~--~~~~~vv~~c~~g~ 76 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIEGS--INIPFSSVFLKEGELEQLPTVPRLEN--YKGKIIVIVSHSHK 76 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccCCC--EeCCHHHhcccccccccccchHHHHh--hcCCeEEEEeCCCc
Confidence 688999999976 368999999999999999999 99998643211 11100001122222 24788999999999
Q ss_pred hHHHHHHHHHHCCccceeeccccHHHHH
Q 032621 91 RSLHATADLLGAGFKHVSNFGGGHMAWV 118 (137)
Q Consensus 91 ra~~~~~~l~~~G~~~v~~l~GG~~~w~ 118 (137)
+|..+++.|...||++|++|+||+.+|+
T Consensus 77 ~s~~~a~~L~~~G~~~v~~l~GG~~a~~ 104 (105)
T cd01525 77 HAALFAAFLVKCGVPRVCILDGGINALK 104 (105)
T ss_pred cHHHHHHHHHHcCCCCEEEEeCcHHHhc
Confidence 9999999999999999999999999994
No 23
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.88 E-value=4.3e-22 Score=152.15 Aligned_cols=104 Identities=28% Similarity=0.458 Sum_probs=92.7
Q ss_pred eeeeCHHHHHHHhhCCCEEEecCChHHHhccCCCCceeeCccccccCCCCCCCChHHHHHHHhh-ccCCCcEEEEeCCCc
Q 032621 12 VITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVVGCQSGA 90 (137)
Q Consensus 12 ~~~is~~~~~~~~~~~~~viDvR~~~e~~~g~ipga~~inip~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iv~~c~~g~ 90 (137)
++.|+++++.+.++++.+|||||++.||..|||||| +|+|+. .+...+... ++++++||+||++|.
T Consensus 2 v~~is~~el~~~l~~~~~ivDvR~~~e~~~ghIpgA--i~ip~~-----------~l~~~~~~~~~~~~~~IvvyC~~G~ 68 (376)
T PRK08762 2 IREISPAEARARAAQGAVLIDVREAHERASGQAEGA--LRIPRG-----------FLELRIETHLPDRDREIVLICASGT 68 (376)
T ss_pred CceeCHHHHHHHHhCCCEEEECCCHHHHhCCcCCCC--EECCHH-----------HHHHHHhhhcCCCCCeEEEEcCCCc
Confidence 568999999999988899999999999999999999 999984 445555544 478899999999999
Q ss_pred hHHHHHHHHHHCCccceeeccccHHHHHhCCCceecCC
Q 032621 91 RSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKARE 128 (137)
Q Consensus 91 ra~~~~~~l~~~G~~~v~~l~GG~~~w~~~~~p~~~~~ 128 (137)
||..+++.|+..||++|++|+||+.+|.+.++|+++..
T Consensus 69 rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~ 106 (376)
T PRK08762 69 RSAHAAATLRELGYTRVASVAGGFSAWKDAGLPLERPR 106 (376)
T ss_pred HHHHHHHHHHHcCCCceEeecCcHHHHHhcCCcccccc
Confidence 99999999999999999999999999999999988654
No 24
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.88 E-value=6.2e-22 Score=133.04 Aligned_cols=97 Identities=26% Similarity=0.416 Sum_probs=82.8
Q ss_pred HHHHhhCC--CEEEecCChHHHhccCCCCceeeCccccccCCCCCCCChHHHHHHHhhccCCCcEEEEeCCCchHHHHHH
Q 032621 20 AKNLLESG--YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHATA 97 (137)
Q Consensus 20 ~~~~~~~~--~~viDvR~~~e~~~g~ipga~~inip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~ 97 (137)
+.+++..+ .+|||||+..+|..|||||| +|+|.. .+...+..+ +++.+||+||.+|.+|..+++
T Consensus 2 l~~~l~~~~~~~ivDvR~~~e~~~gHIpgA--i~~~~~-----------~l~~~l~~l-~~~~~vVv~c~~g~~a~~aa~ 67 (145)
T cd01535 2 LAAWLGEGGQTAVVDVTASANYVKRHIPGA--WWVLRA-----------QLAQALEKL-PAAERYVLTCGSSLLARFAAA 67 (145)
T ss_pred hHHHHhCCCCeEEEECCCHHHHHcCCCCCc--eeCCHH-----------HHHHHHHhc-CCCCCEEEEeCCChHHHHHHH
Confidence 34555544 69999999999999999999 888773 566666654 678899999999999999999
Q ss_pred HHHHCCccceeeccccHHHHHhCCCceecCCCC
Q 032621 98 DLLGAGFKHVSNFGGGHMAWVQNGLKVKAREKP 130 (137)
Q Consensus 98 ~l~~~G~~~v~~l~GG~~~w~~~~~p~~~~~~~ 130 (137)
.|+..|+.+|++|+||+.+|...|+|++++..+
T Consensus 68 ~L~~~G~~~v~~L~GG~~aW~~~g~pl~~~~~~ 100 (145)
T cd01535 68 DLAALTVKPVFVLEGGTAAWIAAGLPVESGETR 100 (145)
T ss_pred HHHHcCCcCeEEecCcHHHHHHCCCCcccCCCC
Confidence 999999999999999999999999999876443
No 25
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.87 E-value=8.8e-22 Score=122.87 Aligned_cols=95 Identities=33% Similarity=0.469 Sum_probs=75.9
Q ss_pred CCEEEecCChHHHhccCCCCceeeCccccccCCCCC-CCChHHHHHHHhh-ccCCCcEEEEeCCCchHHHHHHHHHHCCc
Q 032621 27 GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGR-VKNPDFLKKVRSL-CKEEDRLVVGCQSGARSLHATADLLGAGF 104 (137)
Q Consensus 27 ~~~viDvR~~~e~~~g~ipga~~inip~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~iv~~c~~g~ra~~~~~~l~~~G~ 104 (137)
+.+|||+|+..+|..+||||| +|+|+..+..... .....+....... +.++++||+||.+|.++..+++.|++.|+
T Consensus 4 ~~~ivDvR~~~e~~~~hi~ga--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~l~~~G~ 81 (100)
T smart00450 4 KVVLLDVRSPEEYEGGHIPGA--VNIPLSELLDRRGELDILEFEELLKRLGLDKDKPVVVYCRSGNRSAKAAWLLRELGF 81 (100)
T ss_pred CEEEEECCCHHHhccCCCCCc--eeCCHHHhccCCCCcCHHHHHHHHHHcCCCCCCeEEEEeCCCcHHHHHHHHHHHcCC
Confidence 478999999999999999999 9999865432221 1111233333333 67889999999999999999999999999
Q ss_pred cceeeccccHHHHHhCCCc
Q 032621 105 KHVSNFGGGHMAWVQNGLK 123 (137)
Q Consensus 105 ~~v~~l~GG~~~w~~~~~p 123 (137)
++|++|+||+.+|.+.+.|
T Consensus 82 ~~v~~l~GG~~~w~~~~~~ 100 (100)
T smart00450 82 KNVYLLDGGYKEWSAAGPP 100 (100)
T ss_pred CceEEecCCHHHHHhcCCC
Confidence 9999999999999887754
No 26
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.87 E-value=7.7e-22 Score=126.25 Aligned_cols=102 Identities=32% Similarity=0.507 Sum_probs=78.0
Q ss_pred CHHHHHHHhhC-CCEEEecCChHHHhccCCCCceeeCccccccCCCCCCC-ChHHHHHHHhh---ccCCCcEEEEeCCCc
Q 032621 16 DVRAAKNLLES-GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVK-NPDFLKKVRSL---CKEEDRLVVGCQSGA 90 (137)
Q Consensus 16 s~~~~~~~~~~-~~~viDvR~~~e~~~g~ipga~~inip~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~iv~~c~~g~ 90 (137)
|++++.+.+++ +.+|||+|+..+|..|||||| +|+|+..+....... ...+...+... +++++.||+||.+|.
T Consensus 1 s~~el~~~l~~~~~~liD~R~~~~~~~~hI~ga--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~ 78 (113)
T PF00581_consen 1 SPEELKEMLENESVLLIDVRSPEEYERGHIPGA--VNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGW 78 (113)
T ss_dssp -HHHHHHHHTTTTEEEEEESSHHHHHHSBETTE--EEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSC
T ss_pred CHHHHHhhhhCCCeEEEEeCCHHHHHcCCCCCC--ccccccccccccccccccccccccccccccccccccceeeeeccc
Confidence 68999999943 489999999999999999999 999986552222211 11222222222 678889999999999
Q ss_pred hHHHHHHH-----HHHCCccceeeccccHHHHHh
Q 032621 91 RSLHATAD-----LLGAGFKHVSNFGGGHMAWVQ 119 (137)
Q Consensus 91 ra~~~~~~-----l~~~G~~~v~~l~GG~~~w~~ 119 (137)
++..++.. |..+|+++|++|+||+.+|.+
T Consensus 79 ~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~ 112 (113)
T PF00581_consen 79 RSGSAAAARVAWILKKLGFKNVYILDGGFEAWKA 112 (113)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSEEEETTHHHHHHH
T ss_pred ccchhHHHHHHHHHHHcCCCCEEEecChHHHHhc
Confidence 88777776 888999999999999999975
No 27
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.86 E-value=4.3e-21 Score=141.58 Aligned_cols=114 Identities=20% Similarity=0.260 Sum_probs=93.4
Q ss_pred eeeCHHHHHHHhhCC-CEEEecCC----------hHHHhccCCCCceeeCccccccCC-C----CCC-CChHHHHHHHhh
Q 032621 13 ITVDVRAAKNLLESG-YGYLDVRT----------AEEFKEGHVDAAKIFNIPYMFNTP-E----GRV-KNPDFLKKVRSL 75 (137)
Q Consensus 13 ~~is~~~~~~~~~~~-~~viDvR~----------~~e~~~g~ipga~~inip~~~~~~-~----~~~-~~~~~~~~~~~~ 75 (137)
..++++++.+.++++ .+|||+|+ +.+|..|||||| +|+|+..+.. . ..+ ...+|.+.+.++
T Consensus 5 ~lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (281)
T PRK11493 5 WFVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGA--VFFDIEALSDHTSPLPHMMPRPETFAVAMREL 82 (281)
T ss_pred cccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCC--EEcCHHHhcCCCCCCCCCCCCHHHHHHHHHHc
Confidence 569999999999764 88999996 688999999999 8888754321 1 122 234666677766
Q ss_pred -ccCCCcEEEEeCCCc-hHHHHHHHHHHCCccceeeccccHHHHHhCCCceecCC
Q 032621 76 -CKEEDRLVVGCQSGA-RSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKARE 128 (137)
Q Consensus 76 -~~~~~~iv~~c~~g~-ra~~~~~~l~~~G~~~v~~l~GG~~~w~~~~~p~~~~~ 128 (137)
++++++||+||.++. .+.++++.|..+||++|++|+||+.+|.+.++|+++..
T Consensus 83 Gi~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~~ 137 (281)
T PRK11493 83 GVNQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLLLEEGA 137 (281)
T ss_pred CCCCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCCccCCC
Confidence 889999999999877 47788899999999999999999999999999988764
No 28
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.86 E-value=3.9e-21 Score=128.17 Aligned_cols=102 Identities=21% Similarity=0.324 Sum_probs=83.4
Q ss_pred eCHHHHHHHhh-----CCCEEEecCCh--------HHHhc------------cCCCCceeeCcccccc-CCCC----CCC
Q 032621 15 VDVRAAKNLLE-----SGYGYLDVRTA--------EEFKE------------GHVDAAKIFNIPYMFN-TPEG----RVK 64 (137)
Q Consensus 15 is~~~~~~~~~-----~~~~viDvR~~--------~e~~~------------g~ipga~~inip~~~~-~~~~----~~~ 64 (137)
+|++++.+.++ .+++|||+|.. .+|.. |||||| +|+|+..+ .... .+.
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgA--v~~~~~~~~~~~~~~~~~~p 78 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGA--SFFDFEECLDEAGFEESMEP 78 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCC--EeeCHHHhhCcCCCCCCCCC
Confidence 57899999987 24899999987 88988 999999 88887543 2222 122
Q ss_pred -ChHHHHHHHhh-ccCCCcEEEEeCC---CchHHHHHHHHHHCCccceeeccccHHHHH
Q 032621 65 -NPDFLKKVRSL-CKEEDRLVVGCQS---GARSLHATADLLGAGFKHVSNFGGGHMAWV 118 (137)
Q Consensus 65 -~~~~~~~~~~~-~~~~~~iv~~c~~---g~ra~~~~~~l~~~G~~~v~~l~GG~~~w~ 118 (137)
..+|.+.+... ++++++||+||++ |.+|.++++.|+.+|+++|++|+||+.+|.
T Consensus 79 ~~~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~~W~ 137 (138)
T cd01445 79 SEAEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFFEWF 137 (138)
T ss_pred CHHHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHHHhh
Confidence 23677777777 8899999999986 789999999999999999999999999995
No 29
>PRK01415 hypothetical protein; Validated
Probab=99.86 E-value=3.4e-21 Score=138.82 Aligned_cols=101 Identities=17% Similarity=0.255 Sum_probs=84.3
Q ss_pred ceeeeCHHHHHHHhhCC-CEEEecCChHHHhccCCCCceeeCccccccCCCCCCCChHHHHHHHh--hccCCCcEEEEeC
Q 032621 11 EVITVDVRAAKNLLESG-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRS--LCKEEDRLVVGCQ 87 (137)
Q Consensus 11 ~~~~is~~~~~~~~~~~-~~viDvR~~~e~~~g~ipga~~inip~~~~~~~~~~~~~~~~~~~~~--~~~~~~~iv~~c~ 87 (137)
.-..|+++++.++++++ .+|||||++.||..|||||| +|+|...+. ++..++.. .++++++|++||.
T Consensus 110 ~g~~i~p~e~~~ll~~~~~vvIDVRn~~E~~~Ghi~gA--inip~~~f~--------e~~~~~~~~~~~~k~k~Iv~yCt 179 (247)
T PRK01415 110 KGEYIEPKDWDEFITKQDVIVIDTRNDYEVEVGTFKSA--INPNTKTFK--------QFPAWVQQNQELLKGKKIAMVCT 179 (247)
T ss_pred CccccCHHHHHHHHhCCCcEEEECCCHHHHhcCCcCCC--CCCChHHHh--------hhHHHHhhhhhhcCCCeEEEECC
Confidence 34789999999999864 89999999999999999999 999985321 22222211 1478899999999
Q ss_pred CCchHHHHHHHHHHCCccceeeccccHHHHHhCC
Q 032621 88 SGARSLHATADLLGAGFKHVSNFGGGHMAWVQNG 121 (137)
Q Consensus 88 ~g~ra~~~~~~l~~~G~~~v~~l~GG~~~w~~~~ 121 (137)
+|.||..++..|++.||++|+.|.||+.+|.+..
T Consensus 180 gGiRs~kAa~~L~~~Gf~~Vy~L~GGi~~w~~~~ 213 (247)
T PRK01415 180 GGIRCEKSTSLLKSIGYDEVYHLKGGILQYLEDT 213 (247)
T ss_pred CChHHHHHHHHHHHcCCCcEEEechHHHHHHHhc
Confidence 9999999999999999999999999999998753
No 30
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.85 E-value=7.8e-21 Score=142.46 Aligned_cols=114 Identities=19% Similarity=0.199 Sum_probs=92.8
Q ss_pred eeeCHHHHHHHhhCC-CEEEecC--------C-hHHHhccCCCCceeeCccccccCCC-----CCC-CChHHHHHHHhh-
Q 032621 13 ITVDVRAAKNLLESG-YGYLDVR--------T-AEEFKEGHVDAAKIFNIPYMFNTPE-----GRV-KNPDFLKKVRSL- 75 (137)
Q Consensus 13 ~~is~~~~~~~~~~~-~~viDvR--------~-~~e~~~g~ipga~~inip~~~~~~~-----~~~-~~~~~~~~~~~~- 75 (137)
..|+++++.+.+++. .+|||+| + ..+|..|||||| +|+++..+... ..+ ....|.+.+.++
T Consensus 22 ~lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgA--i~i~~~~~~~~~~~~~~~lp~~~~~~~~l~~~G 99 (320)
T PLN02723 22 PVVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPGA--LFFDLDGISDRTTDLPHMLPSEEAFAAAVSALG 99 (320)
T ss_pred ceecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCCC--eecCHHHhcCCCCCcCCCCCCHHHHHHHHHHcC
Confidence 589999999999764 8899996 3 378999999999 88876544221 112 235677777777
Q ss_pred ccCCCcEEEEeCCCc-hHHHHHHHHHHCCccceeeccccHHHHHhCCCceecCC
Q 032621 76 CKEEDRLVVGCQSGA-RSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKARE 128 (137)
Q Consensus 76 ~~~~~~iv~~c~~g~-ra~~~~~~l~~~G~~~v~~l~GG~~~w~~~~~p~~~~~ 128 (137)
+.++++||+||..|. .+.++++.|+.+||++|++|+||+.+|..+|+|+++..
T Consensus 100 i~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~~~ 153 (320)
T PLN02723 100 IENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYDVESSA 153 (320)
T ss_pred CCCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCCcccCC
Confidence 889999999999876 56788899999999999999999999999999998753
No 31
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.85 E-value=8.3e-21 Score=142.31 Aligned_cols=113 Identities=17% Similarity=0.317 Sum_probs=92.3
Q ss_pred eeeCHHHHHHHhhCC-CEEEecCChHHH-----------hccCCCCceeeCcccccc-CCCCCCC-ChHHHHHHHhh-cc
Q 032621 13 ITVDVRAAKNLLESG-YGYLDVRTAEEF-----------KEGHVDAAKIFNIPYMFN-TPEGRVK-NPDFLKKVRSL-CK 77 (137)
Q Consensus 13 ~~is~~~~~~~~~~~-~~viDvR~~~e~-----------~~g~ipga~~inip~~~~-~~~~~~~-~~~~~~~~~~~-~~ 77 (137)
..++.+++.+.++.+ .+|||+|++.+| ..|||||| +|+|+..+ +..+.+. ..++.+.+.+. ++
T Consensus 190 ~~~~~~~v~~~~~~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgA--vnip~~~~~~~~~~~~~~~el~~~~~~~gi~ 267 (320)
T PLN02723 190 LVWTLEQVKKNIEDKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGS--KCVPFPQMLDSSQTLLPAEELKKRFEQEGIS 267 (320)
T ss_pred ceecHHHHHHhhcCCCeEEEECCCcccccCCCCCCCCCCcCCcCCCC--cccCHHHhcCCCCCCCCHHHHHHHHHhcCCC
Confidence 347889999888754 789999999888 46999999 99998654 3334443 34555556555 78
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHHCCccceeeccccHHHHHhC-CCceecC
Q 032621 78 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQN-GLKVKAR 127 (137)
Q Consensus 78 ~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~~~w~~~-~~p~~~~ 127 (137)
++++||+||++|.||..+++.|+.+||++|++|+||+.+|.+. .+|++++
T Consensus 268 ~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~eW~~~~~~Pv~~~ 318 (320)
T PLN02723 268 LDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSWTEWGALPDTPVATS 318 (320)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHHHHhcCCCCCccCC
Confidence 8999999999999999999999999999999999999999876 6787764
No 32
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.85 E-value=8.6e-21 Score=152.06 Aligned_cols=114 Identities=16% Similarity=0.200 Sum_probs=96.1
Q ss_pred eeeCHHHHHHHhhCC-CEEEecCChHHHhccCCCCceeeCccccccC-----CCCCCC-ChHHHHHHHhh-ccCCCcEEE
Q 032621 13 ITVDVRAAKNLLESG-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNT-----PEGRVK-NPDFLKKVRSL-CKEEDRLVV 84 (137)
Q Consensus 13 ~~is~~~~~~~~~~~-~~viDvR~~~e~~~g~ipga~~inip~~~~~-----~~~~~~-~~~~~~~~~~~-~~~~~~iv~ 84 (137)
..|+++++.++++++ .+|||+|+..+|..|||||| +|+++.... ..+.+. ..+|.+.+.++ ++++++||+
T Consensus 9 ~lIs~~eL~~~l~~~~vvIIDvR~~~eY~~GHIPGA--v~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lGI~~d~~VVv 86 (610)
T PRK09629 9 LVIEPNDLLERLDAPELILVDLTSSARYEAGHIRGA--RFVDPKRTQLGKPPAPGLLPDTADLEQLFGELGHNPDAVYVV 86 (610)
T ss_pred ceecHHHHHHHhcCCCEEEEECCChHHHHhCCCCCc--EEcChhHhhccCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEE
Confidence 579999999999874 88999999999999999999 888864321 112333 24677777777 889999999
Q ss_pred EeCCC-chHHHHHHHHHHCCccceeeccccHHHHHhCCCceecCC
Q 032621 85 GCQSG-ARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKARE 128 (137)
Q Consensus 85 ~c~~g-~ra~~~~~~l~~~G~~~v~~l~GG~~~w~~~~~p~~~~~ 128 (137)
||++| .+|.+++|.|+.+|+++|++|+||+.+|..+|+|+++..
T Consensus 87 Yd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~~~~ 131 (610)
T PRK09629 87 YDDEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALPLSTDV 131 (610)
T ss_pred ECCCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCccccCC
Confidence 99977 589999999999999999999999999999999988764
No 33
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.85 E-value=2.8e-21 Score=121.19 Aligned_cols=84 Identities=30% Similarity=0.459 Sum_probs=68.9
Q ss_pred CCEEEecCChHHHhccCCCCceeeCccccccCCCCCCCChHHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHHCCccc
Q 032621 27 GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKH 106 (137)
Q Consensus 27 ~~~viDvR~~~e~~~g~ipga~~inip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~~G~~~ 106 (137)
+.+|||||++.+|..|||||| +|+|+..+.. .....+.+.. ++++++||+||++|.+|..++++|+..||++
T Consensus 12 ~~~iiDvR~~~~~~~~hIpgA--~~ip~~~~~~-----~~~~~~~~~~-~~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~ 83 (96)
T cd01529 12 GTALLDVRAEDEYAAGHLPGK--RSIPGAALVL-----RSQELQALEA-PGRATRYVLTCDGSLLARFAAQELLALGGKP 83 (96)
T ss_pred CeEEEeCCCHHHHcCCCCCCc--EeCCHHHhcC-----CHHHHHHhhc-CCCCCCEEEEeCChHHHHHHHHHHHHcCCCC
Confidence 479999999999999999999 9999853321 1122222222 4778899999999999999999999999999
Q ss_pred eeeccccHHHHH
Q 032621 107 VSNFGGGHMAWV 118 (137)
Q Consensus 107 v~~l~GG~~~w~ 118 (137)
|++|+||+.+|.
T Consensus 84 v~~l~GG~~~W~ 95 (96)
T cd01529 84 VALLDGGTSAWV 95 (96)
T ss_pred EEEeCCCHHHhc
Confidence 999999999995
No 34
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.85 E-value=1e-20 Score=139.61 Aligned_cols=113 Identities=19% Similarity=0.302 Sum_probs=90.5
Q ss_pred eeeCHHHHHHHhhCC-CEEEecCChHHHh-----------ccCCCCceeeCccccccCCCCCCCC-hHHHHHHHhh-ccC
Q 032621 13 ITVDVRAAKNLLESG-YGYLDVRTAEEFK-----------EGHVDAAKIFNIPYMFNTPEGRVKN-PDFLKKVRSL-CKE 78 (137)
Q Consensus 13 ~~is~~~~~~~~~~~-~~viDvR~~~e~~-----------~g~ipga~~inip~~~~~~~~~~~~-~~~~~~~~~~-~~~ 78 (137)
...+.+++...++.+ .+|||+|+..||. .|||||| +|+|+..+...+.+.. .++...+... +++
T Consensus 153 ~~~~~~~v~~~~~~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA--~~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 230 (281)
T PRK11493 153 AVVRLTDVLLASHEKTAQIVDARPAARFNAEVDEPRPGLRRGHIPGA--LNVPWTELVREGELKTTDELDAIFFGRGVSF 230 (281)
T ss_pred ceecHHHHHHhhcCCCcEEEeCCCccceeeeccCCCCCcccccCCCc--CCCCHHHhcCCCCcCCHHHHHHHHHhcCCCC
Confidence 345667777666553 7899999999984 6999999 9999876644334433 3444455444 788
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHCCccceeeccccHHHHHh-CCCceecC
Q 032621 79 EDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQ-NGLKVKAR 127 (137)
Q Consensus 79 ~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~~~w~~-~~~p~~~~ 127 (137)
+++||+||++|.||..++..|+.+||++|++|+||+.+|.. .++|++++
T Consensus 231 ~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~eW~~~~~~P~~~~ 280 (281)
T PRK11493 231 DRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWSEWGARADLPVEPA 280 (281)
T ss_pred CCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHHHHccCCCCCcCCC
Confidence 99999999999999999999999999999999999999988 58998754
No 35
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.84 E-value=9.3e-21 Score=118.09 Aligned_cols=80 Identities=23% Similarity=0.349 Sum_probs=66.5
Q ss_pred CCEEEecCChHHHhccCCCCceeeCccccccCCCCCCCChHHHH-HHHhhccCCCcEEEEeCCCch--HHHHHHHHHHCC
Q 032621 27 GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLK-KVRSLCKEEDRLVVGCQSGAR--SLHATADLLGAG 103 (137)
Q Consensus 27 ~~~viDvR~~~e~~~g~ipga~~inip~~~~~~~~~~~~~~~~~-~~~~~~~~~~~iv~~c~~g~r--a~~~~~~l~~~G 103 (137)
+.+|||+|++.||..+||||| +|+|.. .+.. ......+++++||+||.+|.+ |..+++.|...|
T Consensus 10 ~~~liDvR~~~e~~~~hi~ga--~~ip~~-----------~~~~~~~~~~~~~~~~ivl~c~~G~~~~s~~aa~~L~~~G 76 (92)
T cd01532 10 EIALIDVREEDPFAQSHPLWA--ANLPLS-----------RLELDAWVRIPRRDTPIVVYGEGGGEDLAPRAARRLSELG 76 (92)
T ss_pred CeEEEECCCHHHHhhCCcccC--eeCCHH-----------HHHhhhHhhCCCCCCeEEEEeCCCCchHHHHHHHHHHHcC
Confidence 488999999999999999999 999985 3322 222223458899999999986 689999999999
Q ss_pred ccceeeccccHHHHHh
Q 032621 104 FKHVSNFGGGHMAWVQ 119 (137)
Q Consensus 104 ~~~v~~l~GG~~~w~~ 119 (137)
|++|++|+||+.+|.+
T Consensus 77 ~~~v~~l~GG~~~W~~ 92 (92)
T cd01532 77 YTDVALLEGGLQGWRA 92 (92)
T ss_pred ccCEEEccCCHHHHcC
Confidence 9999999999999963
No 36
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.84 E-value=1.2e-20 Score=137.32 Aligned_cols=100 Identities=24% Similarity=0.334 Sum_probs=82.4
Q ss_pred ceeeeCHHHHHHHhhCC-------CEEEecCChHHHhccCCCCceeeCccccccCCCCCCCChHHHHHHHhh--ccCCCc
Q 032621 11 EVITVDVRAAKNLLESG-------YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL--CKEEDR 81 (137)
Q Consensus 11 ~~~~is~~~~~~~~~~~-------~~viDvR~~~e~~~g~ipga~~inip~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 81 (137)
....++++++.++++++ .+|||||++.||+.|||||| +|+|+..+. ++..++... ..++++
T Consensus 108 ~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GA--iniPl~~f~--------~~~~~l~~~~~~~kdk~ 177 (257)
T PRK05320 108 RAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGA--LDYRIDKFT--------EFPEALAAHRADLAGKT 177 (257)
T ss_pred cCceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCC--EeCChhHhh--------hhHHHHHhhhhhcCCCe
Confidence 35789999999988652 68999999999999999999 999995321 222223222 127889
Q ss_pred EEEEeCCCchHHHHHHHHHHCCccceeeccccHHHHHhC
Q 032621 82 LVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQN 120 (137)
Q Consensus 82 iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~~~w~~~ 120 (137)
|++||.+|.||..++.+|++.||++|+.|.||+.+|.+.
T Consensus 178 IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~w~~~ 216 (257)
T PRK05320 178 VVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGILKYFEE 216 (257)
T ss_pred EEEECCCCHHHHHHHHHHHHcCCcceEEeccCHHHHHHh
Confidence 999999999999999999999999999999999999864
No 37
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.84 E-value=1.6e-20 Score=118.95 Aligned_cols=79 Identities=27% Similarity=0.481 Sum_probs=69.1
Q ss_pred CCEEEecCChHHHhccCCCCceeeCccccccCCCCCCCChHHHHHHHhh-ccCCCcEEEEeCCCchHHHHHHHHHHCCcc
Q 032621 27 GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVVGCQSGARSLHATADLLGAGFK 105 (137)
Q Consensus 27 ~~~viDvR~~~e~~~g~ipga~~inip~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iv~~c~~g~ra~~~~~~l~~~G~~ 105 (137)
...+||+|+++||..|||||| +|+|+. ++...+.+. .+++++||+||.+|.||..++..|.++||+
T Consensus 18 ~~~lIDvR~~~ef~~ghIpgA--inip~~-----------~l~~~l~~~~~~~~~~vvlyC~~G~rS~~aa~~L~~~G~~ 84 (101)
T TIGR02981 18 AEHWIDVRIPEQYQQEHIQGA--INIPLK-----------EIKEHIATAVPDKNDTVKLYCNAGRQSGMAKDILLDMGYT 84 (101)
T ss_pred CCEEEECCCHHHHhcCCCCCC--EECCHH-----------HHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHcCCC
Confidence 368999999999999999999 999995 566666555 456778999999999999999999999999
Q ss_pred ceeeccccHHHHHh
Q 032621 106 HVSNFGGGHMAWVQ 119 (137)
Q Consensus 106 ~v~~l~GG~~~w~~ 119 (137)
+++.+ ||+.+|..
T Consensus 85 ~v~~~-GG~~~~~~ 97 (101)
T TIGR02981 85 HAENA-GGIKDIAM 97 (101)
T ss_pred eEEec-CCHHHhhh
Confidence 99885 99999964
No 38
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.84 E-value=1.1e-20 Score=121.82 Aligned_cols=97 Identities=23% Similarity=0.400 Sum_probs=75.4
Q ss_pred eeeCHHHHHHHhhCC---CEEEecCChHHHhccCCCCceeeCccccccCCCCCCCChHHHHHHHhh--ccCCCcEEEEeC
Q 032621 13 ITVDVRAAKNLLESG---YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL--CKEEDRLVVGCQ 87 (137)
Q Consensus 13 ~~is~~~~~~~~~~~---~~viDvR~~~e~~~g~ipga~~inip~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iv~~c~ 87 (137)
+.|+++++.+++..+ .+|||||+. ||..|||||| +|+|+..+.. ....+... .+++++||+||.
T Consensus 2 ~~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~gA--~~ip~~~l~~--------~~~~~~~~~~~~~~~~iv~yC~ 70 (113)
T cd01531 2 SYISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIKGS--WHYPSTRFKA--------QLNQLVQLLSGSKKDTVVFHCA 70 (113)
T ss_pred CcCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCCCC--EecCHHHHhh--------CHHHHHHHHhcCCCCeEEEEee
Confidence 578999999998763 679999999 9999999999 9999853211 11222221 256789999998
Q ss_pred -CCchHHHHHHHHHH--------CCccceeeccccHHHHHhC
Q 032621 88 -SGARSLHATADLLG--------AGFKHVSNFGGGHMAWVQN 120 (137)
Q Consensus 88 -~g~ra~~~~~~l~~--------~G~~~v~~l~GG~~~w~~~ 120 (137)
+|.|+..++..|.+ .|+.+|++|+||+.+|.+.
T Consensus 71 ~~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~~ 112 (113)
T cd01531 71 LSQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNAWESS 112 (113)
T ss_pred cCCcchHHHHHHHHHHHHHhccccCCCeEEEEcChHHHHHhh
Confidence 67888888877654 4999999999999999753
No 39
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.83 E-value=2.2e-20 Score=118.76 Aligned_cols=78 Identities=27% Similarity=0.490 Sum_probs=68.6
Q ss_pred CEEEecCChHHHhccCCCCceeeCccccccCCCCCCCChHHHHHHHhh-ccCCCcEEEEeCCCchHHHHHHHHHHCCccc
Q 032621 28 YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVVGCQSGARSLHATADLLGAGFKH 106 (137)
Q Consensus 28 ~~viDvR~~~e~~~g~ipga~~inip~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iv~~c~~g~ra~~~~~~l~~~G~~~ 106 (137)
-.|||+|++.||..+||||| +|+|+. ++...+... .+++++||+||++|.||..++..|.+.||++
T Consensus 21 ~~lIDvR~~~ef~~ghIpGA--iniP~~-----------~l~~~l~~l~~~~~~~IVlyC~~G~rS~~aa~~L~~~G~~~ 87 (104)
T PRK10287 21 EHWIDVRVPEQYQQEHVQGA--INIPLK-----------EVKERIATAVPDKNDTVKLYCNAGRQSGQAKEILSEMGYTH 87 (104)
T ss_pred CEEEECCCHHHHhcCCCCcc--EECCHH-----------HHHHHHHhcCCCCCCeEEEEeCCChHHHHHHHHHHHcCCCe
Confidence 57999999999999999999 999985 566666665 4567789999999999999999999999999
Q ss_pred eeeccccHHHHHh
Q 032621 107 VSNFGGGHMAWVQ 119 (137)
Q Consensus 107 v~~l~GG~~~w~~ 119 (137)
++. .||+.+|..
T Consensus 88 v~~-~GG~~~~~~ 99 (104)
T PRK10287 88 AEN-AGGLKDIAM 99 (104)
T ss_pred EEe-cCCHHHHhh
Confidence 977 699999964
No 40
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.83 E-value=2.8e-20 Score=138.90 Aligned_cols=101 Identities=23% Similarity=0.364 Sum_probs=84.1
Q ss_pred CceeeeCHHHHHHHhhCC-CEEEecCChHHHhccCCCCceeeCccccccCCCCCCCChHHHHHHHh-h-ccCCCcEEEEe
Q 032621 10 AEVITVDVRAAKNLLESG-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRS-L-CKEEDRLVVGC 86 (137)
Q Consensus 10 ~~~~~is~~~~~~~~~~~-~~viDvR~~~e~~~g~ipga~~inip~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~iv~~c 86 (137)
.....++++++.++++++ .+|||||++.||..|||||| +|+|+..+. ++..++.+ . ..++++||+||
T Consensus 109 ~~~~~is~~el~~~l~~~~~vlIDVR~~~E~~~GhI~GA--i~ip~~~~~--------~~~~~l~~~~~~~kdk~IvvyC 178 (314)
T PRK00142 109 NVGTYLKPKEVNELLDDPDVVFIDMRNDYEYEIGHFENA--IEPDIETFR--------EFPPWVEENLDPLKDKKVVMYC 178 (314)
T ss_pred cCCcccCHHHHHHHhcCCCeEEEECCCHHHHhcCcCCCC--EeCCHHHhh--------hhHHHHHHhcCCCCcCeEEEEC
Confidence 345689999999988764 89999999999999999999 999986331 22223322 1 35889999999
Q ss_pred CCCchHHHHHHHHHHCCccceeeccccHHHHHhC
Q 032621 87 QSGARSLHATADLLGAGFKHVSNFGGGHMAWVQN 120 (137)
Q Consensus 87 ~~g~ra~~~~~~l~~~G~~~v~~l~GG~~~w~~~ 120 (137)
.+|.||..++.+|+..||++|+.|+||+.+|...
T Consensus 179 ~~G~Rs~~aa~~L~~~Gf~~V~~L~GGi~~w~~~ 212 (314)
T PRK00142 179 TGGIRCEKASAWMKHEGFKEVYQLEGGIITYGED 212 (314)
T ss_pred CCCcHHHHHHHHHHHcCCCcEEEecchHHHHHHh
Confidence 9999999999999999999999999999999764
No 41
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.83 E-value=5.5e-20 Score=117.43 Aligned_cols=87 Identities=40% Similarity=0.565 Sum_probs=75.1
Q ss_pred CCEEEecCChHHHhccCCCC-ceeeCccccccCCCCCCCChHHHHHHHhh-ccCCCcEEEEeCCCchHHHHHHHHHHCCc
Q 032621 27 GYGYLDVRTAEEFKEGHVDA-AKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVVGCQSGARSLHATADLLGAGF 104 (137)
Q Consensus 27 ~~~viDvR~~~e~~~g~ipg-a~~inip~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iv~~c~~g~ra~~~~~~l~~~G~ 104 (137)
+.+|||||++.||..+|||+ + +|+|...+. ...... .+++++|++||.+|.||..++..|++.||
T Consensus 20 ~~~liDvR~~~e~~~~~i~~~~--~~ip~~~~~-----------~~~~~~~~~~~~~ivv~C~~G~rS~~aa~~L~~~G~ 86 (110)
T COG0607 20 DAVLLDVREPEEYERGHIPGAA--INIPLSELK-----------AAENLLELPDDDPIVVYCASGVRSAAAAAALKLAGF 86 (110)
T ss_pred CCEEEeccChhHhhhcCCCcce--eeeecccch-----------hhhcccccCCCCeEEEEeCCCCChHHHHHHHHHcCC
Confidence 58999999999999999999 8 999996332 211111 47899999999999999999999999999
Q ss_pred cceeeccccHHHHHhCCCceec
Q 032621 105 KHVSNFGGGHMAWVQNGLKVKA 126 (137)
Q Consensus 105 ~~v~~l~GG~~~w~~~~~p~~~ 126 (137)
++++.+.||+.+|...++|+..
T Consensus 87 ~~~~~l~gG~~~w~~~~~~~~~ 108 (110)
T COG0607 87 TNVYNLDGGIDAWKGAGLPLVR 108 (110)
T ss_pred ccccccCCcHHHHHhcCCCccc
Confidence 9888999999999999998765
No 42
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.83 E-value=8.5e-20 Score=133.84 Aligned_cols=117 Identities=24% Similarity=0.356 Sum_probs=97.6
Q ss_pred CceeeeCHHHHHHHhhCC-CEEEecCChHHHhc----------cCCCCceeeCcccccc-CCCCCCCChHHHHHHHhh--
Q 032621 10 AEVITVDVRAAKNLLESG-YGYLDVRTAEEFKE----------GHVDAAKIFNIPYMFN-TPEGRVKNPDFLKKVRSL-- 75 (137)
Q Consensus 10 ~~~~~is~~~~~~~~~~~-~~viDvR~~~e~~~----------g~ipga~~inip~~~~-~~~~~~~~~~~~~~~~~~-- 75 (137)
.....++..+++..++.. .+|||+|++.+|.. |||||| +|+|+..+ ++...+..++..+.+.+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~liDaR~~~rf~G~~~ep~~~~~GHIPGA--iNipw~~~~~~~~~~~~~~~~~~l~~~~g 230 (285)
T COG2897 153 NVKAVVDATLVADALEVPAVLLIDARSPERFRGKEPEPRDGKAGHIPGA--INIPWTDLVDDGGLFKSPEEIARLYADAG 230 (285)
T ss_pred CccccCCHHHHHHHhcCCCeEEEecCCHHHhCCCCCCCCCCCCCCCCCC--cCcCHHHHhcCCCccCcHHHHHHHHHhcC
Confidence 334567778888888775 77999999999988 999999 99999776 444556666677766633
Q ss_pred ccCCCcEEEEeCCCchHHHHHHHHHHCCccceeeccccHHHHHhC-CCceecCC
Q 032621 76 CKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQN-GLKVKARE 128 (137)
Q Consensus 76 ~~~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~~~w~~~-~~p~~~~~ 128 (137)
+++++++|+||++|.+|+..+..|+.+|+.++.+++|++..|.+. +.|++++.
T Consensus 231 i~~~~~vI~yCgsG~~As~~~~al~~lg~~~~~lYdGSWsEWg~~~~~PV~~g~ 284 (285)
T COG2897 231 IDPDKEVIVYCGSGVRASVTWLALAELGGPNNRLYDGSWSEWGSDPDRPVETGE 284 (285)
T ss_pred CCCCCCEEEEcCCchHHHHHHHHHHHhCCCCcccccChHHHhhcCCCCccccCC
Confidence 899999999999999999999999999998889999999999887 56877653
No 43
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.83 E-value=2.6e-20 Score=120.17 Aligned_cols=92 Identities=20% Similarity=0.322 Sum_probs=71.4
Q ss_pred eeeCHHHHHHHhhCC-------CEEEecCChHHHhccCCCCceeeCccccccCCCCCCCChHHHHHHHhh-----ccCCC
Q 032621 13 ITVDVRAAKNLLESG-------YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-----CKEED 80 (137)
Q Consensus 13 ~~is~~~~~~~~~~~-------~~viDvR~~~e~~~g~ipga~~inip~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 80 (137)
+.|+++++.++++++ .+|||||++ ||..|||||| +|+|+.. +...+.+. ..+.+
T Consensus 2 ~~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgA--i~ip~~~-----------~~~~~~~~~~~~~~~~~~ 67 (113)
T cd01443 2 KYISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGS--INLPAQS-----------CYQTLPQVYALFSLAGVK 67 (113)
T ss_pred cccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCc--eecchhH-----------HHHHHHHHHHHhhhcCCC
Confidence 478999999999874 689999999 9999999999 9999852 22222222 13567
Q ss_pred cEEEEeCC-CchHHHHHHHHHH----CCc--cceeeccccHHHHH
Q 032621 81 RLVVGCQS-GARSLHATADLLG----AGF--KHVSNFGGGHMAWV 118 (137)
Q Consensus 81 ~iv~~c~~-g~ra~~~~~~l~~----~G~--~~v~~l~GG~~~w~ 118 (137)
+||+||.+ |.||..++.+|.. .|+ .++++|+||+.+|.
T Consensus 68 ~iv~~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~ 112 (113)
T cd01443 68 LAIFYCGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIKAWY 112 (113)
T ss_pred EEEEECCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhhhhc
Confidence 89999997 6788887766543 465 68999999999995
No 44
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.83 E-value=3e-20 Score=114.07 Aligned_cols=80 Identities=36% Similarity=0.550 Sum_probs=68.7
Q ss_pred CCCEEEecCChHHHhccCCCCceeeCccccccCCCCCCCChHHHHHH-HhhccCCCcEEEEeCCCchHHHHHHHHHHCCc
Q 032621 26 SGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKV-RSLCKEEDRLVVGCQSGARSLHATADLLGAGF 104 (137)
Q Consensus 26 ~~~~viDvR~~~e~~~g~ipga~~inip~~~~~~~~~~~~~~~~~~~-~~~~~~~~~iv~~c~~g~ra~~~~~~l~~~G~ 104 (137)
.+..|||+|+..+|..+||||| +|+|+. .+.... ...++++++||+||+.|.+|..+++.|++.|+
T Consensus 9 ~~~~iiD~R~~~~~~~~~i~ga--~~~~~~-----------~~~~~~~~~~~~~~~~vv~~c~~~~~a~~~~~~l~~~G~ 75 (89)
T cd00158 9 EDAVLLDVREPEEYAAGHIPGA--INIPLS-----------ELEERAALLELDKDKPIVVYCRSGNRSARAAKLLRKAGG 75 (89)
T ss_pred CCeEEEECCCHHHHhccccCCC--EecchH-----------HHhhHHHhhccCCCCeEEEEeCCCchHHHHHHHHHHhCc
Confidence 3589999999999999999999 999985 222221 22257889999999999999999999999999
Q ss_pred cceeeccccHHHHH
Q 032621 105 KHVSNFGGGHMAWV 118 (137)
Q Consensus 105 ~~v~~l~GG~~~w~ 118 (137)
+++++|.||+.+|.
T Consensus 76 ~~v~~l~gG~~~w~ 89 (89)
T cd00158 76 TNVYNLEGGMLAWK 89 (89)
T ss_pred ccEEEecCChhhcC
Confidence 99999999999994
No 45
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.82 E-value=1.2e-19 Score=145.49 Aligned_cols=114 Identities=18% Similarity=0.308 Sum_probs=92.8
Q ss_pred eeeCHHHHHHHhhCC-CEEEecCChHHHh--------ccCCCCceeeCcccccc-CCCCCCCCh-HHHHHHHhh-ccCCC
Q 032621 13 ITVDVRAAKNLLESG-YGYLDVRTAEEFK--------EGHVDAAKIFNIPYMFN-TPEGRVKNP-DFLKKVRSL-CKEED 80 (137)
Q Consensus 13 ~~is~~~~~~~~~~~-~~viDvR~~~e~~--------~g~ipga~~inip~~~~-~~~~~~~~~-~~~~~~~~~-~~~~~ 80 (137)
..++.+++.+.++++ .+|||+|+++||. .|||||| +|+|+..+ +..+.+..+ ++.+.+... +++++
T Consensus 147 ~~v~~e~v~~~l~~~~~~iIDaR~~~ef~G~~~~~~r~GHIPGA--vnip~~~~~~~~~~lk~~~el~~~~~~~Gi~~~~ 224 (610)
T PRK09629 147 PTATREYLQSRLGAADLAIWDARAPTEYSGEKVVAAKGGHIPGA--VNFEWTAGMDKARNLRIRQDMPEILRDLGITPDK 224 (610)
T ss_pred ccccHHHHHHhhCCCCcEEEECCCccccCCcccccccCCCCCCC--eecCHHHhcCCCCCCCCHHHHHHHHHHcCCCCCC
Confidence 467889999988764 7899999999994 6999999 99998643 333444433 444455444 78999
Q ss_pred cEEEEeCCCchHHHHHHHHHHCCccceeeccccHHHHHhC-CCceecCC
Q 032621 81 RLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQN-GLKVKARE 128 (137)
Q Consensus 81 ~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~~~w~~~-~~p~~~~~ 128 (137)
+||+||++|.+|..+++.|+.+||++|++|+|||.+|.+. .+|+++..
T Consensus 225 ~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw~eW~~~~~lPv~~~~ 273 (610)
T PRK09629 225 EVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSWGEWGNHPDTPVEVPT 273 (610)
T ss_pred CEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCHHHHhCCCCCccccCC
Confidence 9999999999999999999999999999999999999876 68887653
No 46
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.81 E-value=1.5e-19 Score=138.77 Aligned_cols=102 Identities=29% Similarity=0.398 Sum_probs=85.3
Q ss_pred CceeeeCHHHHHHHhhCC--CEEEecCChHHHhccCCCCceeeCccccccCCCCCCCChHHHHHHHhhccCCCcEEEEeC
Q 032621 10 AEVITVDVRAAKNLLESG--YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQ 87 (137)
Q Consensus 10 ~~~~~is~~~~~~~~~~~--~~viDvR~~~e~~~g~ipga~~inip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~ 87 (137)
.....|+++++.+.++++ .+|||||++.||..+||||| +|+|+..+.. ...+.. ++++++||+||+
T Consensus 284 ~~~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~ghIpGA--inip~~~l~~---------~~~~~~-l~~d~~iVvyC~ 351 (392)
T PRK07878 284 AAGSTITPRELKEWLDSGKKIALIDVREPVEWDIVHIPGA--QLIPKSEILS---------GEALAK-LPQDRTIVLYCK 351 (392)
T ss_pred CCCCccCHHHHHHHHhCCCCeEEEECCCHHHHhcCCCCCC--EEcChHHhcc---------hhHHhh-CCCCCcEEEEcC
Confidence 345789999999999764 68999999999999999999 9999853210 112323 478999999999
Q ss_pred CCchHHHHHHHHHHCCccceeeccccHHHHHhCCCc
Q 032621 88 SGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLK 123 (137)
Q Consensus 88 ~g~ra~~~~~~l~~~G~~~v~~l~GG~~~w~~~~~p 123 (137)
+|.||..+++.|++.||++|++|+||+.+|.+...+
T Consensus 352 ~G~rS~~aa~~L~~~G~~~V~~L~GG~~~W~~~~~~ 387 (392)
T PRK07878 352 TGVRSAEALAALKKAGFSDAVHLQGGVVAWAKQVDP 387 (392)
T ss_pred CChHHHHHHHHHHHcCCCcEEEecCcHHHHHHhcCC
Confidence 999999999999999999999999999999876543
No 47
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.78 E-value=4.5e-18 Score=124.77 Aligned_cols=118 Identities=23% Similarity=0.260 Sum_probs=93.8
Q ss_pred CceeeeCHHHHHHHhhCC------CEEEecCC--hHHHhccCCCCceeeCcccccc--CC---CCCCC-ChHHHHHHHhh
Q 032621 10 AEVITVDVRAAKNLLESG------YGYLDVRT--AEEFKEGHVDAAKIFNIPYMFN--TP---EGRVK-NPDFLKKVRSL 75 (137)
Q Consensus 10 ~~~~~is~~~~~~~~~~~------~~viDvR~--~~e~~~g~ipga~~inip~~~~--~~---~~~~~-~~~~~~~~~~~ 75 (137)
.....|+++.+.+.++.. ..+++++. ..+|..+||||| +++++... .+ ...+. ..+|.+.+.++
T Consensus 8 ~~~~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGA--v~~d~~~~~~~~~~~~~~lp~~e~fa~~~~~~ 85 (285)
T COG2897 8 SSEFLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGA--VFFDWEADLSDPVPLPHMLPSPEQFAKLLGEL 85 (285)
T ss_pred CcceEEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCC--EecCHHHhhcCCCCCCCCCCCHHHHHHHHHHc
Confidence 456789999999998752 44555554 489999999999 66665432 22 23443 35788888888
Q ss_pred -ccCCCcEEEEeCCC-chHHHHHHHHHHCCccceeeccccHHHHHhCCCceecCCC
Q 032621 76 -CKEEDRLVVGCQSG-ARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAREK 129 (137)
Q Consensus 76 -~~~~~~iv~~c~~g-~ra~~~~~~l~~~G~~~v~~l~GG~~~w~~~~~p~~~~~~ 129 (137)
+..+++||+|++.+ ..|++++|.|+-+|+++|++|+||+.+|.++|+|+++...
T Consensus 86 GI~~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~~~~ 141 (285)
T COG2897 86 GIRNDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLETEPP 141 (285)
T ss_pred CCCCCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccCCCC
Confidence 99999999999764 5899999999999999999999999999999999997543
No 48
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.78 E-value=9.4e-19 Score=132.02 Aligned_cols=108 Identities=24% Similarity=0.356 Sum_probs=81.7
Q ss_pred CHHHHHHHhhCCCEEEecCChHHHhccCCCCceeeCccccccCCC----------C---------CCCChHHHHHHHhh-
Q 032621 16 DVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPE----------G---------RVKNPDFLKKVRSL- 75 (137)
Q Consensus 16 s~~~~~~~~~~~~~viDvR~~~e~~~g~ipga~~inip~~~~~~~----------~---------~~~~~~~~~~~~~~- 75 (137)
...++.+.+.++.+|||||++.||..|||||| +|+|+...... + .+..+++...+.+.
T Consensus 4 ~~~~~~~~~~~~~~lIDVRsp~Ef~~ghIpgA--iniPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~l~~~~~~~~ 81 (345)
T PRK11784 4 DAQDFRALFLNDTPLIDVRSPIEFAEGHIPGA--INLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAGNIAAHREEAW 81 (345)
T ss_pred cHHHHHHHHhCCCEEEECCCHHHHhcCCCCCe--eeCCCCChhHHHhhchhhcccCHHHHHHhhhhhcchhHHHHHHHHH
Confidence 46777777777899999999999999999999 99999543210 0 11122333332221
Q ss_pred --c-cCCCcEEEEeC-CCchHHHHHHHHHHCCccceeeccccHHHHHhCCCceec
Q 032621 76 --C-KEEDRLVVGCQ-SGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKA 126 (137)
Q Consensus 76 --~-~~~~~iv~~c~-~g~ra~~~~~~l~~~G~~~v~~l~GG~~~w~~~~~p~~~ 126 (137)
. .++++||+||. +|.||..++++|...||+ ++.|+||+.+|...+.+...
T Consensus 82 ~~~~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~~-v~~L~GG~~awr~~~~~~~~ 135 (345)
T PRK11784 82 ADFPRANPRGLLYCWRGGLRSGSVQQWLKEAGID-VPRLEGGYKAYRRFVIDTLE 135 (345)
T ss_pred HhcccCCCeEEEEECCCChHHHHHHHHHHHcCCC-cEEEcCCHHHHHHhhHHHHh
Confidence 2 37889999995 789999999999999994 99999999999987765544
No 49
>PRK07411 hypothetical protein; Validated
Probab=99.77 E-value=1.4e-18 Score=133.28 Aligned_cols=104 Identities=29% Similarity=0.426 Sum_probs=84.1
Q ss_pred CceeeeCHHHHHHHhhCC---CEEEecCChHHHhccCCCCceeeCccccccCCCCCCCChHHHHHHHhhccCCCcEEEEe
Q 032621 10 AEVITVDVRAAKNLLESG---YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGC 86 (137)
Q Consensus 10 ~~~~~is~~~~~~~~~~~---~~viDvR~~~e~~~g~ipga~~inip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c 86 (137)
.....|+++++.+.++++ .+|||||++.||..|||||| +|+|+..+... .....+.. +.++++||+||
T Consensus 279 ~~~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghIpGA--iniP~~~l~~~------~~~~~l~~-l~~d~~IVvyC 349 (390)
T PRK07411 279 AEIPEMTVTELKALLDSGADDFVLIDVRNPNEYEIARIPGS--VLVPLPDIENG------PGVEKVKE-LLNGHRLIAHC 349 (390)
T ss_pred cccCccCHHHHHHHHhCCCCCeEEEECCCHHHhccCcCCCC--EEccHHHhhcc------cchHHHhh-cCCCCeEEEEC
Confidence 345789999999998753 58999999999999999999 99998643211 01123333 36789999999
Q ss_pred CCCchHHHHHHHHHHCCccceeeccccHHHHHhCCCc
Q 032621 87 QSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLK 123 (137)
Q Consensus 87 ~~g~ra~~~~~~l~~~G~~~v~~l~GG~~~w~~~~~p 123 (137)
.+|.||..+++.|++.||++ +.|.||+.+|.+...|
T Consensus 350 ~~G~RS~~aa~~L~~~G~~~-~~l~GG~~~W~~~~~p 385 (390)
T PRK07411 350 KMGGRSAKALGILKEAGIEG-TNVKGGITAWSREVDP 385 (390)
T ss_pred CCCHHHHHHHHHHHHcCCCe-EEecchHHHHHHhcCC
Confidence 99999999999999999984 5899999999887654
No 50
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.77 E-value=1.2e-18 Score=132.23 Aligned_cols=95 Identities=29% Similarity=0.432 Sum_probs=78.6
Q ss_pred ceeeeCHHHHHHHhhCCCEEEecCChHHHhccCCCCceeeCccccccCCCCCCCChHHHHHHHh-hccCCCcEEEEeCCC
Q 032621 11 EVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRS-LCKEEDRLVVGCQSG 89 (137)
Q Consensus 11 ~~~~is~~~~~~~~~~~~~viDvR~~~e~~~g~ipga~~inip~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iv~~c~~g 89 (137)
....++++++.+.. .+.+|||||+++||..+||||| +|+|+.. +...+.. .++++++||+||++|
T Consensus 259 ~~~~i~~~~~~~~~-~~~~IIDVR~~~ef~~ghIpgA--inip~~~-----------l~~~~~~~~~~~~~~IvvyC~~G 324 (355)
T PRK05597 259 FGEVLDVPRVSALP-DGVTLIDVREPSEFAAYSIPGA--HNVPLSA-----------IREGANPPSVSAGDEVVVYCAAG 324 (355)
T ss_pred cccccCHHHHHhcc-CCCEEEECCCHHHHccCcCCCC--EEeCHHH-----------hhhccccccCCCCCeEEEEcCCC
Confidence 34578888888543 4589999999999999999999 9999952 2222211 246888999999999
Q ss_pred chHHHHHHHHHHCCccceeeccccHHHHHh
Q 032621 90 ARSLHATADLLGAGFKHVSNFGGGHMAWVQ 119 (137)
Q Consensus 90 ~ra~~~~~~l~~~G~~~v~~l~GG~~~w~~ 119 (137)
.||..+++.|+..||++|++|+||+.+|..
T Consensus 325 ~rS~~Aa~~L~~~G~~nV~~L~GGi~~W~~ 354 (355)
T PRK05597 325 VRSAQAVAILERAGYTGMSSLDGGIEGWLD 354 (355)
T ss_pred HHHHHHHHHHHHcCCCCEEEecCcHHHHhh
Confidence 999999999999999999999999999964
No 51
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.76 E-value=2.3e-18 Score=128.28 Aligned_cols=97 Identities=24% Similarity=0.372 Sum_probs=72.3
Q ss_pred CEEEecCChHHHhccCCCCceeeCccccccCCCC---CC----------------CC---hHHHHHHHhhccCCCcEEEE
Q 032621 28 YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEG---RV----------------KN---PDFLKKVRSLCKEEDRLVVG 85 (137)
Q Consensus 28 ~~viDvR~~~e~~~g~ipga~~inip~~~~~~~~---~~----------------~~---~~~~~~~~~~~~~~~~iv~~ 85 (137)
..|||||++.||..|||||| +|+|+....... .+ .. +++...+....++.+.||+|
T Consensus 3 ~~liDVRsp~Ef~~ghipgA--iniPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~~~~~~~~~vvvy 80 (311)
T TIGR03167 3 DPLIDVRSPAEFAEGHLPGA--INLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWRAFADGPPQPLLY 80 (311)
T ss_pred CEEEECCCHHHHhcCCCcCC--EecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHHhhcCCCCcEEEE
Confidence 58999999999999999999 999995332110 00 01 11222332224555569999
Q ss_pred eC-CCchHHHHHHHHHHCCccceeeccccHHHHHhCCCceecC
Q 032621 86 CQ-SGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAR 127 (137)
Q Consensus 86 c~-~g~ra~~~~~~l~~~G~~~v~~l~GG~~~w~~~~~p~~~~ 127 (137)
|. +|.||..++++|..+|| ++++|+||+.+|...+.+....
T Consensus 81 C~~gG~RS~~aa~~L~~~G~-~v~~L~GG~~aw~~~~~~~~~~ 122 (311)
T TIGR03167 81 CWRGGMRSGSLAWLLAQIGF-RVPRLEGGYKAYRRFVIDQLEE 122 (311)
T ss_pred ECCCChHHHHHHHHHHHcCC-CEEEecChHHHHHHhhhhhhhc
Confidence 95 78999999999999999 5999999999999888765543
No 52
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.73 E-value=2.6e-17 Score=108.80 Aligned_cols=103 Identities=22% Similarity=0.187 Sum_probs=74.9
Q ss_pred eeCHHHHHHHhhC---CCEEEecCChHHHhccCCCCceeeCccccccC---C-CC------CCCChHHHHHHHhhccCCC
Q 032621 14 TVDVRAAKNLLES---GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNT---P-EG------RVKNPDFLKKVRSLCKEED 80 (137)
Q Consensus 14 ~is~~~~~~~~~~---~~~viDvR~~~e~~~g~ipga~~inip~~~~~---~-~~------~~~~~~~~~~~~~~~~~~~ 80 (137)
.|+++++.+.++. +.+|||+|+..+|..|||||| +|+|+..+. . .. .+..++....+... +++
T Consensus 1 ~is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~~a--i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~ 76 (132)
T cd01446 1 TIDCAWLAALLREGGERLLLLDCRPFLEYSSSHIRGA--VNVCCPTILRRRLQGGKILLQQLLSCPEDRDRLRRG--ESL 76 (132)
T ss_pred CcCHHHHHHHHhcCCCCEEEEECCCHHHHhhCcccCc--EecChHHHHHHhhcccchhhhhhcCCHHHHHHHhcC--CCC
Confidence 3789999999974 479999999999999999999 888876321 0 00 12222333333332 678
Q ss_pred cEEEEeCCCch---------HHHHHHHHHH--CCccceeeccccHHHHHhC
Q 032621 81 RLVVGCQSGAR---------SLHATADLLG--AGFKHVSNFGGGHMAWVQN 120 (137)
Q Consensus 81 ~iv~~c~~g~r---------a~~~~~~l~~--~G~~~v~~l~GG~~~w~~~ 120 (137)
+||+||.++.+ +..++..|.. .++.+|++|+||+.+|.+.
T Consensus 77 ~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~~ 127 (132)
T cd01446 77 AVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSSE 127 (132)
T ss_pred eEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHHHHhh
Confidence 89999998765 5666666666 3667899999999999653
No 53
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.68 E-value=9.7e-17 Score=122.33 Aligned_cols=94 Identities=26% Similarity=0.331 Sum_probs=74.3
Q ss_pred eeeCHHHHHHHhhCC-CEEEecCChHHHhccCCC---CceeeCccccccCCCCCCCChHHHHHHHhhccCCCcEEEEeCC
Q 032621 13 ITVDVRAAKNLLESG-YGYLDVRTAEEFKEGHVD---AAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQS 88 (137)
Q Consensus 13 ~~is~~~~~~~~~~~-~~viDvR~~~e~~~g~ip---ga~~inip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~ 88 (137)
.+++++++.++++++ .+|||||++.||..|||| || +|||+..+... .++...+.. +++ ++||+||.+
T Consensus 271 ~~~~~~el~~~l~~~~~~lIDVR~~~E~~~ghI~~~~gA--inIPl~~l~~~-----~~~~~~l~~-~~~-~~Ivv~C~s 341 (370)
T PRK05600 271 ARTDTTSLIDATLNGSATLLDVREPHEVLLKDLPEGGAS--LKLPLSAITDD-----ADILHALSP-IDG-DNVVVYCAS 341 (370)
T ss_pred cccCHHHHHHHHhcCCeEEEECCCHHHhhhccCCCCCcc--EeCcHHHhhcc-----hhhhhhccc-cCC-CcEEEECCC
Confidence 478999999998875 689999999999999998 47 99998633110 011222322 233 489999999
Q ss_pred CchHHHHHHHHHHCCccc-eeeccccHH
Q 032621 89 GARSLHATADLLGAGFKH-VSNFGGGHM 115 (137)
Q Consensus 89 g~ra~~~~~~l~~~G~~~-v~~l~GG~~ 115 (137)
|.||..++..|++.||++ |+.|.||+.
T Consensus 342 G~RS~~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 342 GIRSADFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred ChhHHHHHHHHHHcCCCCceEEeccccC
Confidence 999999999999999986 999999974
No 54
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=99.60 E-value=1.5e-15 Score=110.68 Aligned_cols=99 Identities=22% Similarity=0.306 Sum_probs=83.2
Q ss_pred eeeeCHHHHHHHhhCC-CEEEecCChHHHhccCCCCceeeCccccccCCCCCCCChHHHHHHHhh--ccCCCcEEEEeCC
Q 032621 12 VITVDVRAAKNLLESG-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL--CKEEDRLVVGCQS 88 (137)
Q Consensus 12 ~~~is~~~~~~~~~~~-~~viDvR~~~e~~~g~ipga~~inip~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iv~~c~~ 88 (137)
-..|+|+++.+++..+ .+|||.|...||+.||+.|| ++.+..++ .+|..++.+. .-++++|+.||.+
T Consensus 112 G~yl~p~~wn~~l~D~~~vviDtRN~YE~~iG~F~gA--v~p~~~tF--------refP~~v~~~~~~~~~KkVvmyCTG 181 (308)
T COG1054 112 GTYLSPKDWNELLSDPDVVVIDTRNDYEVAIGHFEGA--VEPDIETF--------REFPAWVEENLDLLKDKKVVMYCTG 181 (308)
T ss_pred cCccCHHHHHHHhcCCCeEEEEcCcceeEeeeeecCc--cCCChhhh--------hhhHHHHHHHHHhccCCcEEEEcCC
Confidence 3578999999999875 99999999999999999999 88887543 2344444332 3567899999999
Q ss_pred CchHHHHHHHHHHCCccceeeccccHHHHHhC
Q 032621 89 GARSLHATADLLGAGFKHVSNFGGGHMAWVQN 120 (137)
Q Consensus 89 g~ra~~~~~~l~~~G~~~v~~l~GG~~~w~~~ 120 (137)
|.|+..+..+|...||++|+-|+||+-.|...
T Consensus 182 GIRCEKas~~m~~~GF~eVyhL~GGIl~Y~e~ 213 (308)
T COG1054 182 GIRCEKASAWMKENGFKEVYHLEGGILKYLED 213 (308)
T ss_pred ceeehhhHHHHHHhcchhhhcccchHHHHhhh
Confidence 99999999999999999999999999988654
No 55
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=99.56 E-value=1.4e-14 Score=114.07 Aligned_cols=81 Identities=15% Similarity=0.257 Sum_probs=68.3
Q ss_pred HHHHHHHhhCCCEEEecCChHHHhccCCCC----ceeeCccccccCCCCCCCChHHHHHHHhhccCCCcEEEEeCCCchH
Q 032621 17 VRAAKNLLESGYGYLDVRTAEEFKEGHVDA----AKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARS 92 (137)
Q Consensus 17 ~~~~~~~~~~~~~viDvR~~~e~~~g~ipg----a~~inip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~ra 92 (137)
+.+..+.+..+.++||||+++||..+|||| | +|+|+. ++...+.. ++++++|++||.+|.||
T Consensus 397 ~~~~~~~~~~~~~lIDVR~~~E~~~~hI~g~~~~a--~niP~~-----------~l~~~~~~-l~~~~~iivyC~~G~rS 462 (482)
T PRK01269 397 EVETVSELPPDDVIIDIRSPDEQEDKPLKLEGVEV--KSLPFY-----------KLSTQFGD-LDQSKTYLLYCDRGVMS 462 (482)
T ss_pred hhHHHHhcCCCCEEEECCCHHHHhcCCCCCCCceE--EECCHH-----------HHHHHHhh-cCCCCeEEEECCCCHHH
Confidence 344555556678999999999999999999 8 999995 45555544 47888999999999999
Q ss_pred HHHHHHHHHCCccceeecc
Q 032621 93 LHATADLLGAGFKHVSNFG 111 (137)
Q Consensus 93 ~~~~~~l~~~G~~~v~~l~ 111 (137)
..++..|++.||++|+++.
T Consensus 463 ~~aa~~L~~~G~~nv~~y~ 481 (482)
T PRK01269 463 RLQALYLREQGFSNVKVYR 481 (482)
T ss_pred HHHHHHHHHcCCccEEecC
Confidence 9999999999999998775
No 56
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=99.44 E-value=1.6e-12 Score=94.49 Aligned_cols=117 Identities=21% Similarity=0.244 Sum_probs=92.1
Q ss_pred eeeCHHHHHHHhhCC-CEEEecC---------ChHHHhccCCCCceeeCcccccc---CCCCCCC-ChHHHHHHHhh-cc
Q 032621 13 ITVDVRAAKNLLESG-YGYLDVR---------TAEEFKEGHVDAAKIFNIPYMFN---TPEGRVK-NPDFLKKVRSL-CK 77 (137)
Q Consensus 13 ~~is~~~~~~~~~~~-~~viDvR---------~~~e~~~g~ipga~~inip~~~~---~~~~~~~-~~~~~~~~~~~-~~ 77 (137)
..+++..+.+.+.+. +.|||.. ...||..-|||||.++++..-.. ....++. ...|.+.+..+ ++
T Consensus 5 ~iv~~~~v~~~~~~~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdld~~~~~s~~~~~~lp~~e~Fa~y~~~lGi~ 84 (286)
T KOG1529|consen 5 SIVSVKWVMENLGNHGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDLDIISYPSSPYRHMLPTAEHFAEYASRLGVD 84 (286)
T ss_pred cccChHHHHHhCcCCCeEEEeeeeecCchhhhhhhhhhhccCCCceeeeccccccCCCcccccCccHHHHHHHHHhcCCC
Confidence 467889999988874 8899985 44678889999995554443211 1112333 35677888777 88
Q ss_pred CCCcEEEEeC--CCc-hHHHHHHHHHHCCccceeeccccHHHHHhCCCceecCCC
Q 032621 78 EEDRLVVGCQ--SGA-RSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAREK 129 (137)
Q Consensus 78 ~~~~iv~~c~--~g~-ra~~~~~~l~~~G~~~v~~l~GG~~~w~~~~~p~~~~~~ 129 (137)
.++.+|||++ .|. .|++++|.++.+|+++|..|+||+.+|+..++|+.....
T Consensus 85 n~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~~~s~~~ 139 (286)
T KOG1529|consen 85 NGDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGPVDSSKV 139 (286)
T ss_pred CCCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHHHHcCCccccccc
Confidence 9999999999 676 799999999999999999999999999999999988764
No 57
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=99.38 E-value=1.3e-12 Score=96.60 Aligned_cols=101 Identities=19% Similarity=0.310 Sum_probs=77.0
Q ss_pred CCCceeeeCHHHHHHHhhCC-------CEEEecCChHHHhccCCCCceeeCccccccCCCCCCCChHHHHHHHhh---cc
Q 032621 8 SGAEVITVDVRAAKNLLESG-------YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL---CK 77 (137)
Q Consensus 8 ~~~~~~~is~~~~~~~~~~~-------~~viDvR~~~e~~~g~ipga~~inip~~~~~~~~~~~~~~~~~~~~~~---~~ 77 (137)
+...++.||++.++.++... +.|||+|-+.||..|||+|| +||... +..+.+.-. ..
T Consensus 151 k~~~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkga--vnl~~~-----------~~~~~~f~~~~~~~ 217 (325)
T KOG3772|consen 151 KSQDLKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGA--VNLYSK-----------ELLQDFFLLKDGVP 217 (325)
T ss_pred ccccccccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccc--eecccH-----------hhhhhhhccccccc
Confidence 45668899999999999762 46999999999999999999 999875 222222211 11
Q ss_pred ---CCCcEEEEeCC-CchHHHHHHHHHH------------CCccceeeccccHHHHHhCC
Q 032621 78 ---EEDRLVVGCQS-GARSLHATADLLG------------AGFKHVSNFGGGHMAWVQNG 121 (137)
Q Consensus 78 ---~~~~iv~~c~~-g~ra~~~~~~l~~------------~G~~~v~~l~GG~~~w~~~~ 121 (137)
....+||+|-- ..|+..+|..|+. +-|..+|+|+|||.+|...-
T Consensus 218 ~~~~~~i~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~~ 277 (325)
T KOG3772|consen 218 SGSKRVILIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSNY 277 (325)
T ss_pred cccCceeEEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHHhc
Confidence 22457999995 5599999999983 34567999999999997654
No 58
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.31 E-value=3.9e-12 Score=94.67 Aligned_cols=104 Identities=28% Similarity=0.277 Sum_probs=81.3
Q ss_pred CceeeeCHHHHHHHhhCC--CEEEecCChHHHhccCCCCceeeCccccccCCCCCCCChHHHHHHHhh-ccCCCcEEEEe
Q 032621 10 AEVITVDVRAAKNLLESG--YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVVGC 86 (137)
Q Consensus 10 ~~~~~is~~~~~~~~~~~--~~viDvR~~~e~~~g~ipga~~inip~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iv~~c 86 (137)
....+||+.++++.++++ .++||||++.||+..|+|.| +|||+..+.... .++.... -..+++|+++|
T Consensus 314 ~~~~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~lP~a--vNIPL~~l~~~~-------~~~~~~~~~~~~~~I~ViC 384 (427)
T KOG2017|consen 314 EPDERVSVTDYKRILDSGAKHLLLDVRPSHEYEICRLPEA--VNIPLKELRSRS-------GKKLQGDLNTESKDIFVIC 384 (427)
T ss_pred ChhhcccHHHHHHHHhcCCCeEEEeccCcceEEEEecccc--cccchhhhhhhh-------hhhhcccccccCCCEEEEe
Confidence 335789999999999884 89999999999999999999 999996432111 1222222 34567899999
Q ss_pred CCCchHHHHHHHHHHCCcc-ceeeccccHHHHHhCCC
Q 032621 87 QSGARSLHATADLLGAGFK-HVSNFGGGHMAWVQNGL 122 (137)
Q Consensus 87 ~~g~ra~~~~~~l~~~G~~-~v~~l~GG~~~w~~~~~ 122 (137)
..|..|.++.+.|++...+ +|..+.||+.+|...-.
T Consensus 385 rrGNdSQ~Av~~Lre~~~~~~vrDvigGl~~w~~~vd 421 (427)
T KOG2017|consen 385 RRGNDSQRAVRILREKFPDSSVRDVIGGLKAWAAKVD 421 (427)
T ss_pred CCCCchHHHHHHHHhhCCchhhhhhhhHHHHHHHhcC
Confidence 9999999999999986543 46678999999977643
No 59
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=99.16 E-value=1.6e-10 Score=84.05 Aligned_cols=90 Identities=24% Similarity=0.478 Sum_probs=74.2
Q ss_pred CCEEEecCChHHHh-----------ccCCCCceeeCcccccc-CCCCCCC-ChHHHHHHHhh-ccCCCcEEEEeCCCchH
Q 032621 27 GYGYLDVRTAEEFK-----------EGHVDAAKIFNIPYMFN-TPEGRVK-NPDFLKKVRSL-CKEEDRLVVGCQSGARS 92 (137)
Q Consensus 27 ~~~viDvR~~~e~~-----------~g~ipga~~inip~~~~-~~~~~~~-~~~~~~~~~~~-~~~~~~iv~~c~~g~ra 92 (137)
++.+||.|+..+|. .|||||| +|+|+..+ .+.+.+. ..++...+.+. +..++++++.|+.|..+
T Consensus 172 ~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa--~n~P~~~~~~~~g~~k~~edl~~~f~~~~l~~~~p~~~sC~~Gisa 249 (286)
T KOG1529|consen 172 NFQYLDARSKGRFDGTEPEPRSGATGGHIPGA--INFPFDEVLDPDGFIKPAEDLKHLFAQKGLKLSKPVIVSCGTGISA 249 (286)
T ss_pred cceeeeccccccccccCCCCcccCcCccCCCc--ccCChHHhcccccccCCHHHHHHHHHhcCcccCCCEEEeeccchhH
Confidence 48899999988884 4999999 99999765 5555554 33444444444 77789999999999999
Q ss_pred HHHHHHHHHCCccceeeccccHHHHHh
Q 032621 93 LHATADLLGAGFKHVSNFGGGHMAWVQ 119 (137)
Q Consensus 93 ~~~~~~l~~~G~~~v~~l~GG~~~w~~ 119 (137)
...+-.|...| .++.+++|++..|.-
T Consensus 250 ~~i~~al~r~g-~~~~lYdGS~~Ew~~ 275 (286)
T KOG1529|consen 250 SIIALALERSG-PDAKLYDGSWTEWAL 275 (286)
T ss_pred HHHHHHHHhcC-CCcceecccHHHHhh
Confidence 99999999999 779999999999975
No 60
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=98.90 E-value=5.4e-09 Score=77.29 Aligned_cols=103 Identities=22% Similarity=0.306 Sum_probs=77.7
Q ss_pred CCCCCCceeeeCHHHHHHHhhCC-------CEEEecCChHHHhccCCCCceeeCccccccCCCCCCCChHHHHHHHh-h-
Q 032621 5 GKSSGAEVITVDVRAAKNLLESG-------YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRS-L- 75 (137)
Q Consensus 5 ~~~~~~~~~~is~~~~~~~~~~~-------~~viDvR~~~e~~~g~ipga~~inip~~~~~~~~~~~~~~~~~~~~~-~- 75 (137)
++.+...+++|+++.++..++.. -.|||+|-+.||..|||-+| +||-.. +.+..+.. .
T Consensus 234 ~~~k~Ds~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIina--VNi~s~-----------~~l~~~F~hkp 300 (427)
T COG5105 234 GPGKSDSIQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINA--VNISST-----------KKLGLLFRHKP 300 (427)
T ss_pred CCCcccchhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeee--eecchH-----------HHHHHHHHhcc
Confidence 45566778999999999999863 35999999999999999999 888653 22222221 1
Q ss_pred ccCCCcEEEEeC-CCchHHHHHHHHHHC------------CccceeeccccHHHHHhC
Q 032621 76 CKEEDRLVVGCQ-SGARSLHATADLLGA------------GFKHVSNFGGGHMAWVQN 120 (137)
Q Consensus 76 ~~~~~~iv~~c~-~g~ra~~~~~~l~~~------------G~~~v~~l~GG~~~w~~~ 120 (137)
+.--..+|+.|. +..|+...|.+|+.. =|+.|++|+|||.++-..
T Consensus 301 lThp~aLifHCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy~n 358 (427)
T COG5105 301 LTHPRALIFHCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYSN 358 (427)
T ss_pred ccCceeEEEEeecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHhhc
Confidence 222455899998 577999999999753 246799999999987654
No 61
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=98.18 E-value=1.8e-05 Score=52.48 Aligned_cols=88 Identities=17% Similarity=0.178 Sum_probs=57.0
Q ss_pred eeeCHHHHHHHhhCC-CEEEecCChHHHhcc----------CCCCceeeCccccccCCCCCCCChHHHHHHHhhc-cCCC
Q 032621 13 ITVDVRAAKNLLESG-YGYLDVRTAEEFKEG----------HVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLC-KEED 80 (137)
Q Consensus 13 ~~is~~~~~~~~~~~-~~viDvR~~~e~~~g----------~ipga~~inip~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 80 (137)
..++.+++..+.+.+ ..|||.|+..|.... .-+|..++++|+.. ..++. .-...+...+ ..++
T Consensus 13 ~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~----~~~~~-~~v~~f~~~~~~~~~ 87 (135)
T TIGR01244 13 PQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTA----GDITP-DDVETFRAAIGAAEG 87 (135)
T ss_pred CCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCC----CCCCH-HHHHHHHHHHHhCCC
Confidence 678889998877777 679999987664321 12577778888752 12222 2222222221 2458
Q ss_pred cEEEEeCCCchHHHHHHHHH-HCCcc
Q 032621 81 RLVVGCQSGARSLHATADLL-GAGFK 105 (137)
Q Consensus 81 ~iv~~c~~g~ra~~~~~~l~-~~G~~ 105 (137)
+|+++|.+|.|+..++..+. ..|.+
T Consensus 88 pvL~HC~sG~Rt~~l~al~~~~~g~~ 113 (135)
T TIGR01244 88 PVLAYCRSGTRSSLLWGFRQAAEGVP 113 (135)
T ss_pred CEEEEcCCChHHHHHHHHHHHHcCCC
Confidence 89999999999888876543 35665
No 62
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=98.11 E-value=1.6e-05 Score=50.90 Aligned_cols=83 Identities=14% Similarity=0.112 Sum_probs=44.9
Q ss_pred eeeCHHHHHHHhhCC-CEEEecCChHHHh----------ccCCCCceeeCccccccCCCCCCCChHHHHHHHhh-ccCCC
Q 032621 13 ITVDVRAAKNLLESG-YGYLDVRTAEEFK----------EGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEED 80 (137)
Q Consensus 13 ~~is~~~~~~~~~~~-~~viDvR~~~e~~----------~g~ipga~~inip~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 80 (137)
..++++++.++.+.| ..||+.|+..|-. ...--|-.++++|... ..++ .+-...+... -...+
T Consensus 13 ~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~----~~~~-~~~v~~f~~~l~~~~~ 87 (110)
T PF04273_consen 13 GQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDG----GAIT-EEDVEAFADALESLPK 87 (110)
T ss_dssp CS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----T----TT---HHHHHHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCC----CCCC-HHHHHHHHHHHHhCCC
Confidence 578999999999988 6799999875421 1222355678888752 1222 2222222222 12357
Q ss_pred cEEEEeCCCchHHHHHHHHH
Q 032621 81 RLVVGCQSGARSLHATADLL 100 (137)
Q Consensus 81 ~iv~~c~~g~ra~~~~~~l~ 100 (137)
||++||.+|.||...|..-+
T Consensus 88 Pvl~hC~sG~Ra~~l~~l~~ 107 (110)
T PF04273_consen 88 PVLAHCRSGTRASALWALAQ 107 (110)
T ss_dssp SEEEE-SCSHHHHHHHHHHH
T ss_pred CEEEECCCChhHHHHHHHHh
Confidence 99999999999988776544
No 63
>COG2603 Predicted ATPase [General function prediction only]
Probab=98.00 E-value=5.5e-06 Score=60.95 Aligned_cols=100 Identities=24% Similarity=0.297 Sum_probs=65.8
Q ss_pred CHHHHHHHhhCCCEEEecCChHHHhccCCCCceeeCccccccCCC-------CC--CC-------------ChHHHHHHH
Q 032621 16 DVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPE-------GR--VK-------------NPDFLKKVR 73 (137)
Q Consensus 16 s~~~~~~~~~~~~~viDvR~~~e~~~g~ipga~~inip~~~~~~~-------~~--~~-------------~~~~~~~~~ 73 (137)
+.+++..++.+...+||||++-||..|+.|++ +|+|....+.. .. .+ ...+.-.++
T Consensus 4 ~~q~~~~~~~~~~~lid~rap~ef~~g~~~ia--~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~as 81 (334)
T COG2603 4 TEQDYRALLLADTPLIDVRAPIEFENGAMPIA--INLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEAS 81 (334)
T ss_pred hHHHHHHHHhcCCceeeccchHHHhcccchhh--hccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34566667777799999999999999999999 99998532110 00 00 000111111
Q ss_pred hhccCCCcEEEEeCC-CchHHHHHHHH-HHCCccceeeccccHHHHH
Q 032621 74 SLCKEEDRLVVGCQS-GARSLHATADL-LGAGFKHVSNFGGGHMAWV 118 (137)
Q Consensus 74 ~~~~~~~~iv~~c~~-g~ra~~~~~~l-~~~G~~~v~~l~GG~~~w~ 118 (137)
...-.+.++-++|.. |.|+...+.+| ...|.+ +.-+.||+.+..
T Consensus 82 k~f~e~~~~Gi~c~rgg~rsk~v~~~l~~~~g~~-~~r~iGGeKalr 127 (334)
T COG2603 82 KAFQEENPVGILCARGGLRSKIVQKWLGYAAGID-YPRVIGGEKALR 127 (334)
T ss_pred HHHHHhCCcceeeccccchhHHHHHHHHHHHHhh-hhhhhchHHHHH
Confidence 112234555556885 56999999999 667875 777889988764
No 64
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=97.42 E-value=2.8e-05 Score=61.96 Aligned_cols=102 Identities=20% Similarity=0.247 Sum_probs=71.7
Q ss_pred CCCceeeeCHHHHHHHhhCCCEEEecCChHHHhccCCCCceeeCccccccCCCCCCCChHHHHHHHhhccCCCcEEEEeC
Q 032621 8 SGAEVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQ 87 (137)
Q Consensus 8 ~~~~~~~is~~~~~~~~~~~~~viDvR~~~e~~~g~ipga~~inip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~ 87 (137)
+....++|+.+++..+ ....|+|.|...||..+|++++ +|+|+.. .+..++.-.+.+... -..++.++++..
T Consensus 617 ~se~~prmsAedl~~~--~~l~v~d~r~~~ef~r~~~s~s--~nip~~~--~ea~l~~~~~l~~~~--~~~~~~~v~~~~ 688 (725)
T KOG1093|consen 617 SSEHCPRISAEDLIWL--KMLYVLDTRQESEFQREHFSDS--INIPFNN--HEADLDWLRFLPGIV--CSEGKKCVVVGK 688 (725)
T ss_pred hhhcCccccHHHHHHH--HHHHHHhHHHHHHHHHhhcccc--ccCCccc--hHHHHHHhhcchHhH--HhhCCeEEEecc
Confidence 3455688999888777 3378999999999999999999 9999961 111111111112222 235666777766
Q ss_pred CCchHHHHHHHHHHCCccceeeccccHHHH
Q 032621 88 SGARSLHATADLLGAGFKHVSNFGGGHMAW 117 (137)
Q Consensus 88 ~g~ra~~~~~~l~~~G~~~v~~l~GG~~~w 117 (137)
...-+.+....+..+-+.++.++++|+.++
T Consensus 689 ~~K~~~e~~~~~~~mk~p~~cil~~~~~~~ 718 (725)
T KOG1093|consen 689 NDKHAAERLTELYVMKVPRICILHDGFNNI 718 (725)
T ss_pred chHHHHHHhhHHHHhcccHHHHHHHHHhhc
Confidence 666777777778877798999999998854
No 65
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=97.27 E-value=0.0019 Score=44.04 Aligned_cols=95 Identities=17% Similarity=0.230 Sum_probs=46.9
Q ss_pred eeeeCHHHHHHHhhCC-CEEEecCChHHHhc---cCCCCceeeCccccccCCCC------C------------------C
Q 032621 12 VITVDVRAAKNLLESG-YGYLDVRTAEEFKE---GHVDAAKIFNIPYMFNTPEG------R------------------V 63 (137)
Q Consensus 12 ~~~is~~~~~~~~~~~-~~viDvR~~~e~~~---g~ipga~~inip~~~~~~~~------~------------------~ 63 (137)
+..+|.++...+.+-+ ..|||.|++.|... -.++|..++++|+....... . +
T Consensus 27 l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~ 106 (164)
T PF13350_consen 27 LSNLTEADLERLRELGIRTIIDLRSPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADAPRGMLEFYREML 106 (164)
T ss_dssp -TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS----TT-EEEE--SS-S-TTH----------HHHHHHHHHHHHHHGG
T ss_pred cCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCCcCCceeeeecccccccccccccccccccccchhhHHHHHHHHHH
Confidence 3567888888777666 67999999999876 45668888888875332110 0 0
Q ss_pred -C-ChHHHHHHHhhccCCCcEEEEeCCCc-hHHHH-HHHHHHCCccc
Q 032621 64 -K-NPDFLKKVRSLCKEEDRLVVGCQSGA-RSLHA-TADLLGAGFKH 106 (137)
Q Consensus 64 -~-~~~~~~~~~~~~~~~~~iv~~c~~g~-ra~~~-~~~l~~~G~~~ 106 (137)
. .+.+.+-+..+.+...+++++|..|+ |.-.+ +-.|..+|++.
T Consensus 107 ~~~~~~~~~~~~~l~~~~~p~l~HC~aGKDRTG~~~alll~~lGV~~ 153 (164)
T PF13350_consen 107 ESYAEAYRKIFELLADAPGPVLFHCTAGKDRTGVVAALLLSLLGVPD 153 (164)
T ss_dssp GSTHHHHHHHHHHHH-TT--EEEE-SSSSSHHHHHHHHHHHHTT--H
T ss_pred HhhhHHHHHHHHHhccCCCcEEEECCCCCccHHHHHHHHHHHcCCCH
Confidence 1 12233333223334479999999998 65555 44566688864
No 66
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=96.68 E-value=0.00019 Score=54.10 Aligned_cols=81 Identities=9% Similarity=0.036 Sum_probs=55.7
Q ss_pred eCHHHHHHHhhCCCEEEecCChHHHhccCCCCceeeCccccccCCCCCCCChHHHHHHHhhccC--CCcEEEEeCC--Cc
Q 032621 15 VDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKE--EDRLVVGCQS--GA 90 (137)
Q Consensus 15 is~~~~~~~~~~~~~viDvR~~~e~~~g~ipga~~inip~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iv~~c~~--g~ 90 (137)
-+++++.+.+.....++|+|....|..+||||+ +++|.. .+..++.++.+. .+++++.-.. ..
T Consensus 16 ~~~~~~~~~l~~~~~~~d~rg~i~~a~egIngt--is~~~~-----------~~~~~~~~l~~~~~~~~i~l~~~~~~~~ 82 (314)
T PRK00142 16 EDPEAFRDEHLALCKSLGLKGRILVAEEGINGT--VSGTIE-----------QTEAYMAWLKADPRFADIRFKISEDDGH 82 (314)
T ss_pred CCHHHHHHHHHHHHHHcCCeeEEEEcCCCceEE--EEecHH-----------HHHHHHHHHhhCcCCCCceEEeccccCC
Confidence 357888888887778999999999999999999 999984 566666666332 5666555433 12
Q ss_pred hH----HHHHHHHHHCCcc-cee
Q 032621 91 RS----LHATADLLGAGFK-HVS 108 (137)
Q Consensus 91 ra----~~~~~~l~~~G~~-~v~ 108 (137)
.. ..+...|..+|++ ++.
T Consensus 83 ~f~~l~~~~~~eLv~~G~d~~v~ 105 (314)
T PRK00142 83 AFPRLSVKVRKEIVALGLDDDID 105 (314)
T ss_pred CcccceeeeeeeeeecCCCCCCC
Confidence 22 4455556667774 443
No 67
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=96.48 E-value=0.0087 Score=39.10 Aligned_cols=79 Identities=13% Similarity=0.163 Sum_probs=45.3
Q ss_pred hCC-CEEEecCChHHHhccCCCCceeeCccccccCCCCCCC--ChHHHHHHHhhccCCCcEEEEeCCCc-hHHHH-H-HH
Q 032621 25 ESG-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVK--NPDFLKKVRSLCKEEDRLVVGCQSGA-RSLHA-T-AD 98 (137)
Q Consensus 25 ~~~-~~viDvR~~~e~~~g~ipga~~inip~~~~~~~~~~~--~~~~~~~~~~~~~~~~~iv~~c~~g~-ra~~~-~-~~ 98 (137)
..+ ..|||+++..+...-..+|-.+.++|+..... ..+. .+.+.+.+......+++|+++|..|. ||..+ + ..
T Consensus 25 ~~gi~~VI~l~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l 103 (139)
T cd00127 25 KLGITHVLNVAKEVPNENLFLSDFNYLYVPILDLPS-QDISKYFDEAVDFIDDAREKGGKVLVHCLAGVSRSATLVIAYL 103 (139)
T ss_pred HcCCCEEEEcccCCCCcccCCCCceEEEEEceeCCC-CChHHHHHHHHHHHHHHHhcCCcEEEECCCCCchhHHHHHHHH
Confidence 345 68999999877533344555667788753321 1110 01223334333445789999999987 77655 3 33
Q ss_pred HHHCCc
Q 032621 99 LLGAGF 104 (137)
Q Consensus 99 l~~~G~ 104 (137)
+...|+
T Consensus 104 ~~~~~~ 109 (139)
T cd00127 104 MKTLGL 109 (139)
T ss_pred HHHcCC
Confidence 344454
No 68
>PLN02727 NAD kinase
Probab=96.05 E-value=0.019 Score=48.75 Aligned_cols=85 Identities=18% Similarity=0.174 Sum_probs=53.3
Q ss_pred ceeeeCHHHHHHHhhCC-CEEEecCChHHHhccCC----------CCceeeCccccccCCCCCCCChHHHHHHHhhc--c
Q 032621 11 EVITVDVRAAKNLLESG-YGYLDVRTAEEFKEGHV----------DAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLC--K 77 (137)
Q Consensus 11 ~~~~is~~~~~~~~~~~-~~viDvR~~~e~~~g~i----------pga~~inip~~~~~~~~~~~~~~~~~~~~~~~--~ 77 (137)
....++++++..+.+.| ..||+.|+..|- .+.. .|-.++++|+..... + ..+-...+.+.+ .
T Consensus 265 rsgQpspe~la~LA~~GfKTIINLRpd~E~-~q~~~~ee~eAae~~GL~yVhIPVs~~~a---p-t~EqVe~fa~~l~~s 339 (986)
T PLN02727 265 RGGQVTEEGLKWLLEKGFKTIVDLRAEIVK-DNFYQAAVDDAISSGKIEVVKIPVEVRTA---P-SAEQVEKFASLVSDS 339 (986)
T ss_pred EeCCCCHHHHHHHHHCCCeEEEECCCCCcC-CCchhHHHHHHHHHcCCeEEEeecCCCCC---C-CHHHHHHHHHHHHhh
Confidence 34688999999988888 579999987662 2221 245667888742111 1 123333333333 2
Q ss_pred CCCcEEEEeCCCch-H-HHHHHHHH
Q 032621 78 EEDRLVVGCQSGAR-S-LHATADLL 100 (137)
Q Consensus 78 ~~~~iv~~c~~g~r-a-~~~~~~l~ 100 (137)
..+||+++|.+|.+ + ..++.++.
T Consensus 340 lpkPVLvHCKSGarRAGamvA~yl~ 364 (986)
T PLN02727 340 SKKPIYLHSKEGVWRTSAMVSRWKQ 364 (986)
T ss_pred cCCCEEEECCCCCchHHHHHHHHHH
Confidence 47899999999984 3 44455555
No 69
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.86 E-value=0.039 Score=35.80 Aligned_cols=82 Identities=17% Similarity=0.183 Sum_probs=51.4
Q ss_pred eeeeCHHHHHHHhhCC-CEEEecCChHHHhc----------cCCCCceeeCccccccCCCCCCCCh---HHHHHHHhhcc
Q 032621 12 VITVDVRAAKNLLESG-YGYLDVRTAEEFKE----------GHVDAAKIFNIPYMFNTPEGRVKNP---DFLKKVRSLCK 77 (137)
Q Consensus 12 ~~~is~~~~~~~~~~~-~~viDvR~~~e~~~----------g~ipga~~inip~~~~~~~~~~~~~---~~~~~~~~~~~ 77 (137)
.+.++++++.+.-..+ ..||..|+..|-.. ..-.|-.+.+||... ..++.. .|.+.+. .
T Consensus 13 sgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~----~~iT~~dV~~f~~Al~---e 85 (130)
T COG3453 13 SGQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTG----GGITEADVEAFQRALD---E 85 (130)
T ss_pred cCCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCC----CCCCHHHHHHHHHHHH---H
Confidence 3578899999998888 56999997544310 001122234555531 123222 3444444 3
Q ss_pred CCCcEEEEeCCCchHHHHHHHHH
Q 032621 78 EEDRLVVGCQSGARSLHATADLL 100 (137)
Q Consensus 78 ~~~~iv~~c~~g~ra~~~~~~l~ 100 (137)
.+.|++-||.+|.||...+..-.
T Consensus 86 aegPVlayCrsGtRs~~ly~~~~ 108 (130)
T COG3453 86 AEGPVLAYCRSGTRSLNLYGLGE 108 (130)
T ss_pred hCCCEEeeecCCchHHHHHHHHH
Confidence 57899999999999988876543
No 70
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=95.50 E-value=0.041 Score=43.37 Aligned_cols=101 Identities=24% Similarity=0.275 Sum_probs=61.1
Q ss_pred eeeCHHHHHHHhh--CC---CEEEecCChHHHhccCCCCceeeCccccccCCCCCCCChHHHHHHHhh-------ccCC-
Q 032621 13 ITVDVRAAKNLLE--SG---YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-------CKEE- 79 (137)
Q Consensus 13 ~~is~~~~~~~~~--~~---~~viDvR~~~e~~~g~ipga~~inip~~~~~~~~~~~~~~~~~~~~~~-------~~~~- 79 (137)
--|++-|+.+.-+ .+ ..|||.|+.++|..||+-.| +|+.-.-+.. .+..|...+..+ +..+
T Consensus 307 Lpisv~el~~~~~~~~~~VrFFiVDcRpaeqynaGHlsta--FhlDc~lmlq----eP~~Fa~av~sLl~aqrqtie~~s 380 (669)
T KOG3636|consen 307 LPISVIELTSHDEISSGSVRFFIVDCRPAEQYNAGHLSTA--FHLDCVLMLQ----EPEKFAIAVNSLLCAQRQTIERDS 380 (669)
T ss_pred cchhHHHhhcccccccCceEEEEEeccchhhcccccchhh--hcccHHHHhc----CHHHHHHHHHHHHHHHHHhhhccc
Confidence 4455555554432 22 57999999999999999988 8765432111 112454444433 2232
Q ss_pred ---CcEEEEeCCCch-----HHHHHHHHHHCCccceeeccccHHHHHh
Q 032621 80 ---DRLVVGCQSGAR-----SLHATADLLGAGFKHVSNFGGGHMAWVQ 119 (137)
Q Consensus 80 ---~~iv~~c~~g~r-----a~~~~~~l~~~G~~~v~~l~GG~~~w~~ 119 (137)
.+-+++-.+|.. -..+...+.+.+-..|.++.|||.+..+
T Consensus 381 ~aggeHlcfmGsGr~EED~YmnMviA~FlQKnk~yVS~~~GGy~~lh~ 428 (669)
T KOG3636|consen 381 NAGGEHLCFMGSGRDEEDNYMNMVIAMFLQKNKLYVSFVQGGYKKLHD 428 (669)
T ss_pred cCCcceEEEeccCcchHHHHHHHHHHHHHhcCceEEEEecchHHHHHH
Confidence 355555555542 3444555556666668999999998764
No 71
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=94.83 E-value=0.09 Score=34.37 Aligned_cols=79 Identities=19% Similarity=0.274 Sum_probs=43.9
Q ss_pred hhCC-CEEEecCChHHHhccCCCCceeeCccccccCCCCCCCC--hHHHHHHHhhccCCCcEEEEeCCCc-hHHHH-HH-
Q 032621 24 LESG-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKN--PDFLKKVRSLCKEEDRLVVGCQSGA-RSLHA-TA- 97 (137)
Q Consensus 24 ~~~~-~~viDvR~~~e~~~g~ipga~~inip~~~~~~~~~~~~--~~~~~~~~~~~~~~~~iv~~c~~g~-ra~~~-~~- 97 (137)
.+.+ ..||+++...+.. .-++-.++++|..... ...+.. ....+.+......+.+|+++|..|. ||..+ +.
T Consensus 23 ~~~gi~~Vi~l~~~~~~~--~~~~~~~~~ipi~D~~-~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~~y 99 (138)
T smart00195 23 KKLGITHVINVTNEVPNL--NKKGFTYLGVPILDNT-ETKISPYFPEAVEFIEDAEKKGGKVLVHCQAGVSRSATLIIAY 99 (138)
T ss_pred HHcCCCEEEEccCCCCCC--CCCCCEEEEEECCCCC-CCChHHHHHHHHHHHHHHhcCCCeEEEECCCCCchHHHHHHHH
Confidence 3445 6799998764421 2345567788875311 111110 1222233333567789999999996 76653 33
Q ss_pred HHHHCCcc
Q 032621 98 DLLGAGFK 105 (137)
Q Consensus 98 ~l~~~G~~ 105 (137)
.+...|++
T Consensus 100 l~~~~~~~ 107 (138)
T smart00195 100 LMKYRNLS 107 (138)
T ss_pred HHHHhCCC
Confidence 34456764
No 72
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=94.35 E-value=0.26 Score=37.27 Aligned_cols=65 Identities=12% Similarity=0.126 Sum_probs=44.5
Q ss_pred eeeeCHHHHHHHhhCC-CEEEecCChHHHhc---cCCC-CceeeCccccccCCCCCCCChHHHHHHHhh---ccCCCcEE
Q 032621 12 VITVDVRAAKNLLESG-YGYLDVRTAEEFKE---GHVD-AAKIFNIPYMFNTPEGRVKNPDFLKKVRSL---CKEEDRLV 83 (137)
Q Consensus 12 ~~~is~~~~~~~~~~~-~~viDvR~~~e~~~---g~ip-ga~~inip~~~~~~~~~~~~~~~~~~~~~~---~~~~~~iv 83 (137)
...+...++++.+... ..|||+|+..+|.. |||| +. -|. ...|...+... +++..+|+
T Consensus 135 ~tg~gKt~Ll~~L~~~~~~VvDlr~~a~hrGs~fG~~~~~~----qps----------q~~fe~~L~~~l~~~~~~~~i~ 200 (311)
T TIGR03167 135 MTGSGKTELLHALANAGAQVLDLEGLANHRGSSFGALGLGP----QPS----------QKRFENALAEALRRLDPGRPIF 200 (311)
T ss_pred CCCcCHHHHHHHHhcCCCeEEECCchHHhcCcccCCCCCCC----CCc----------hHHHHHHHHHHHHhCCCCceEE
Confidence 3567788888888764 78999999999998 8888 42 111 13444444333 46667788
Q ss_pred EEeCCCc
Q 032621 84 VGCQSGA 90 (137)
Q Consensus 84 ~~c~~g~ 90 (137)
+-|.+..
T Consensus 201 ~e~es~~ 207 (311)
T TIGR03167 201 VEDESRR 207 (311)
T ss_pred EEeCchh
Confidence 8887643
No 73
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=93.73 E-value=0.039 Score=40.66 Aligned_cols=95 Identities=19% Similarity=0.233 Sum_probs=55.3
Q ss_pred eeCHHHHHHHhhCC-CEEEecCChHHHhccCCCCceeeCcccccc-----C----CC-CCCCC----hHHHHHHHhhccC
Q 032621 14 TVDVRAAKNLLESG-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFN-----T----PE-GRVKN----PDFLKKVRSLCKE 78 (137)
Q Consensus 14 ~is~~~~~~~~~~~-~~viDvR~~~e~~~g~ipga~~inip~~~~-----~----~~-~~~~~----~~~~~~~~~~~~~ 78 (137)
.++++++.+.+..+ .+|+|.|+ ...||.+| +++-+..+ . +. ..++. +.+..+. +
T Consensus 5 ~~s~~wlnr~l~~~nllllDCRs----es~~i~~A--~~valPalmlrrl~~g~l~~ra~~p~~~d~~~~~~~c-----~ 73 (343)
T KOG1717|consen 5 SKSVAWLNRQLELGNLLLLDCRS----ESSHIESA--INVALPALMLRRLTGGNLPVRALFPRSCDDKRFPARC-----G 73 (343)
T ss_pred HHHHHHHHhhcccCceEEEecCC----ccchhhhh--hhhcchHHHHHHHhCCCCcceeccCCccccccccccC-----C
Confidence 46788888888764 89999999 46789888 55443221 0 00 00100 1111111 2
Q ss_pred CCcEEEEeCCC--chH----HHH----HHHHHHCCccceeeccccHHHHHhC
Q 032621 79 EDRLVVGCQSG--ARS----LHA----TADLLGAGFKHVSNFGGGHMAWVQN 120 (137)
Q Consensus 79 ~~~iv~~c~~g--~ra----~~~----~~~l~~~G~~~v~~l~GG~~~w~~~ 120 (137)
...+|+|+.+. +.. +.. -..++..|.. ++.|.||+..+..+
T Consensus 74 ~v~vilyD~~~~e~e~~~~~~s~Lg~ll~kl~~~g~~-a~yL~ggF~~fq~e 124 (343)
T KOG1717|consen 74 TVTVILYDESSAEWEEETGAESVLGLLLKKLKDEGCS-ARYLSGGFSKFQAE 124 (343)
T ss_pred cceeeecccccccccccchhhhHHHHHHHHHHhcCcc-hhhhhcccchhhhh
Confidence 35688888762 111 111 1345567876 99999999887654
No 74
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=92.36 E-value=1 Score=30.84 Aligned_cols=82 Identities=16% Similarity=0.244 Sum_probs=41.8
Q ss_pred HHHHHhh-CC-CEEEecCC----hHHHhccCCCCceeeCccccccCCCCCCCChHHHHHHHhh----ccCCCcEEEEeCC
Q 032621 19 AAKNLLE-SG-YGYLDVRT----AEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL----CKEEDRLVVGCQS 88 (137)
Q Consensus 19 ~~~~~~~-~~-~~viDvR~----~~e~~~g~ipga~~inip~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iv~~c~~ 88 (137)
+..+.++ .+ ..||.+.. .+.+...+| .+.++|+....+...-.-.+|.+.+... ...+.+|+++|..
T Consensus 31 ~~l~~L~~~gI~~Iv~l~~~~~~~~~~~~~gi---~~~~~p~~D~~~P~~~~i~~~~~~i~~~~~~~~~~g~~V~VHC~a 107 (166)
T PTZ00242 31 LYIKELQRYNVTHLVRVCGPTYDAELLEKNGI---EVHDWPFDDGAPPPKAVIDNWLRLLDQEFAKQSTPPETIAVHCVA 107 (166)
T ss_pred HHHHHHHhCCCeEEEecCCCCCCHHHHHHCCC---EEEecCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCeEEEECCC
Confidence 3334444 45 45777743 234444455 3466776422111110002344433332 2458899999998
Q ss_pred Cc-hHHHH-HHHHHHCC
Q 032621 89 GA-RSLHA-TADLLGAG 103 (137)
Q Consensus 89 g~-ra~~~-~~~l~~~G 103 (137)
|. ||..+ +.+|.+.|
T Consensus 108 GigRSgt~~a~yL~~~~ 124 (166)
T PTZ00242 108 GLGRAPILVALALVEYG 124 (166)
T ss_pred CCCHHHHHHHHHHHHhC
Confidence 87 76654 55555544
No 75
>PRK12361 hypothetical protein; Provisional
Probab=92.27 E-value=0.33 Score=39.33 Aligned_cols=82 Identities=20% Similarity=0.211 Sum_probs=43.4
Q ss_pred HHHHHHHhhCC-CEEEecCChHHHhc--cCCCCceeeCccccccCCCCCCCChHHHH---HHHhhccCCCcEEEEeCCCc
Q 032621 17 VRAAKNLLESG-YGYLDVRTAEEFKE--GHVDAAKIFNIPYMFNTPEGRVKNPDFLK---KVRSLCKEEDRLVVGCQSGA 90 (137)
Q Consensus 17 ~~~~~~~~~~~-~~viDvR~~~e~~~--g~ipga~~inip~~~~~~~~~~~~~~~~~---~~~~~~~~~~~iv~~c~~g~ 90 (137)
+.++..+.+.+ ..|||+|...+... ....+-.+.++|....... ...++.+ .+.+....+.+|+++|..|.
T Consensus 110 a~d~~~L~~~gI~~Vldlt~E~~~~~~~~~~~~i~yl~iPi~D~~~p---~~~~l~~a~~~i~~~~~~~~~VlVHC~~G~ 186 (547)
T PRK12361 110 PADLEKLKSNKITAILDVTAEFDGLDWSLTEEDIDYLNIPILDHSVP---TLAQLNQAINWIHRQVRANKSVVVHCALGR 186 (547)
T ss_pred cccHHHHHHcCCCEEEEcccccccccccccccCceEEEeecCCCCCC---cHHHHHHHHHHHHHHHHCCCeEEEECCCCC
Confidence 44444444455 67999995322111 1122345678887533211 1123333 33323456788999999887
Q ss_pred -hHHHH-HHHHHH
Q 032621 91 -RSLHA-TADLLG 101 (137)
Q Consensus 91 -ra~~~-~~~l~~ 101 (137)
||..+ +.+|..
T Consensus 187 sRSa~vv~ayLm~ 199 (547)
T PRK12361 187 GRSVLVLAAYLLC 199 (547)
T ss_pred CcHHHHHHHHHHH
Confidence 65544 455543
No 76
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=91.69 E-value=0.66 Score=31.92 Aligned_cols=84 Identities=18% Similarity=0.214 Sum_probs=35.5
Q ss_pred HHHHhhCC-CEEEecCChHHHhccCCC---------CceeeCccccccCCCCCCCChHHHHHHHhhccCCCcEEEEeCCC
Q 032621 20 AKNLLESG-YGYLDVRTAEEFKEGHVD---------AAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSG 89 (137)
Q Consensus 20 ~~~~~~~~-~~viDvR~~~e~~~g~ip---------ga~~inip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g 89 (137)
+.++...+ ..||=.-+..|...-.+| |-.|+++|+........-..-++...+...+..+++|+++|.+|
T Consensus 64 L~~Lk~~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aPd~~~~~~i~~eL~~~L~~g~~V~vHC~GG 143 (168)
T PF05706_consen 64 LERLKDWGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGSAPDFAAAWQILEELAARLENGRKVLVHCRGG 143 (168)
T ss_dssp HHHHHHTT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS---HHHHHHHHHHHHHHHHTT--EEEE-SSS
T ss_pred HHHHHHCCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCCCCCHHHHHHHHHHHHHHHHcCCEEEEECCCC
Confidence 33333334 345556666666543343 44667777743211100000123333433378899999999998
Q ss_pred c-hHHH-HHHHHHHCC
Q 032621 90 A-RSLH-ATADLLGAG 103 (137)
Q Consensus 90 ~-ra~~-~~~~l~~~G 103 (137)
. |+.. +|..|.++|
T Consensus 144 lGRtGlvAAcLLl~L~ 159 (168)
T PF05706_consen 144 LGRTGLVAACLLLELG 159 (168)
T ss_dssp SSHHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHHHc
Confidence 6 7655 455566555
No 77
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=91.21 E-value=0.28 Score=31.73 Aligned_cols=78 Identities=15% Similarity=0.180 Sum_probs=40.9
Q ss_pred CEEEecCChHHH-hccCCCCceeeCccccccCCCCCC-CChHHHHHHHhhccCCCcEEEEeCCCc-hHHHH-HHHHH-HC
Q 032621 28 YGYLDVRTAEEF-KEGHVDAAKIFNIPYMFNTPEGRV-KNPDFLKKVRSLCKEEDRLVVGCQSGA-RSLHA-TADLL-GA 102 (137)
Q Consensus 28 ~~viDvR~~~e~-~~g~ipga~~inip~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iv~~c~~g~-ra~~~-~~~l~-~~ 102 (137)
..||+++...+. ....-++-...++|.......... .-..+...+......+.+|+++|..|. ||..+ +.+|. ..
T Consensus 20 ~~Vin~~~~~~~~~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~ 99 (133)
T PF00782_consen 20 THVINLQEECPNPYFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVHCKAGLSRSGAVAAAYLMKKN 99 (133)
T ss_dssp EEEEECSSSSSTSHHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEEESSSSSHHHHHHHHHHHHHH
T ss_pred CEEEEccCCCcCchhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEEeCCCcccchHHHHHHHHHHc
Confidence 469999975443 112233335577776431111000 011233333333567889999999987 66554 33343 35
Q ss_pred Ccc
Q 032621 103 GFK 105 (137)
Q Consensus 103 G~~ 105 (137)
|++
T Consensus 100 ~~~ 102 (133)
T PF00782_consen 100 GMS 102 (133)
T ss_dssp TSS
T ss_pred CCC
Confidence 653
No 78
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=91.14 E-value=2.1 Score=31.18 Aligned_cols=71 Identities=18% Similarity=0.306 Sum_probs=40.2
Q ss_pred CEEEecCCh----HHHhccCCCCceeeCccccccCCCCCCCChH----HHHHHHhhccCCCcEEEEeCCCc-hHHH-HHH
Q 032621 28 YGYLDVRTA----EEFKEGHVDAAKIFNIPYMFNTPEGRVKNPD----FLKKVRSLCKEEDRLVVGCQSGA-RSLH-ATA 97 (137)
Q Consensus 28 ~~viDvR~~----~e~~~g~ipga~~inip~~~~~~~~~~~~~~----~~~~~~~~~~~~~~iv~~c~~g~-ra~~-~~~ 97 (137)
..||.+... .++....| .+.++|+.. ...+..+ |...+...+..+..|+++|..|. |+.. ++.
T Consensus 118 ~~lVrlcE~~Yd~~~~~~~GI---~~~~lpipD----g~aPs~~~i~~~l~~i~~~l~~g~~VaVHC~AGlGRTGtl~Aa 190 (241)
T PTZ00393 118 TDLVRTCERTYNDGEITSAGI---NVHELIFPD----GDAPTVDIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAPVLASI 190 (241)
T ss_pred CEEEECCCCCCCHHHHHHcCC---eEEEeecCC----CCCCCHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHH
Confidence 467777532 34443333 446666642 2222223 34444333557888999999886 6544 455
Q ss_pred HHHHCCcc
Q 032621 98 DLLGAGFK 105 (137)
Q Consensus 98 ~l~~~G~~ 105 (137)
+|.+.|++
T Consensus 191 yLI~~Gms 198 (241)
T PTZ00393 191 VLIEFGMD 198 (241)
T ss_pred HHHHcCCC
Confidence 66667764
No 79
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=90.99 E-value=0.79 Score=28.61 Aligned_cols=37 Identities=19% Similarity=0.197 Sum_probs=27.9
Q ss_pred hHHHHHHHhhccCCCcEEEEeCCCchH-HHHHHHHHHCCcc
Q 032621 66 PDFLKKVRSLCKEEDRLVVGCQSGARS-LHATADLLGAGFK 105 (137)
Q Consensus 66 ~~~~~~~~~~~~~~~~iv~~c~~g~ra-~~~~~~l~~~G~~ 105 (137)
.++.+.+.+ .+++++++.+.+.++ ...+..|+.+|++
T Consensus 20 ~e~l~~L~~---~g~~~~~lTNns~~s~~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 20 VEALDALRE---RGKPVVFLTNNSSRSREEYAKKLKKLGIP 57 (101)
T ss_dssp HHHHHHHHH---TTSEEEEEES-SSS-HHHHHHHHHHTTTT
T ss_pred HHHHHHHHH---cCCCEEEEeCCCCCCHHHHHHHHHhcCcC
Confidence 367777764 578999999988766 7778889999986
No 80
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=89.97 E-value=0.21 Score=32.78 Aligned_cols=36 Identities=25% Similarity=0.222 Sum_probs=28.5
Q ss_pred EEEEeCCCc-hHHHHHHHHHHC----CccceeeccccHHHH
Q 032621 82 LVVGCQSGA-RSLHATADLLGA----GFKHVSNFGGGHMAW 117 (137)
Q Consensus 82 iv~~c~~g~-ra~~~~~~l~~~----G~~~v~~l~GG~~~w 117 (137)
|+|+|.++. ||..+...|+.+ +-.++.+...|+.+|
T Consensus 1 ILFvC~~N~cRS~mAEai~~~~~~~~~~~~~~v~SAG~~~~ 41 (138)
T PF01451_consen 1 ILFVCTGNICRSPMAEAILRHLLKQRLGDRFEVESAGTEAW 41 (138)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHTHTTTEEEEEEESSST
T ss_pred CEEEeCCCcchHHHHHHHHHHhccccccCCcEEEEEeeccc
Confidence 789999876 999888888877 556688888887755
No 81
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=89.40 E-value=0.45 Score=31.24 Aligned_cols=36 Identities=25% Similarity=0.239 Sum_probs=26.9
Q ss_pred EEEEeCCCc-hHHHHHHHHHHCCccceeeccccHHHH
Q 032621 82 LVVGCQSGA-RSLHATADLLGAGFKHVSNFGGGHMAW 117 (137)
Q Consensus 82 iv~~c~~g~-ra~~~~~~l~~~G~~~v~~l~GG~~~w 117 (137)
|+|+|.+.. ||..+..+|+.+.-.++.+...|+.+|
T Consensus 1 vLFVC~~N~cRSpmAEa~~~~~~~~~~~v~SAG~~~~ 37 (140)
T smart00226 1 ILFVCTGNICRSPMAEALFKAIVGDRVKIDSAGTGAW 37 (140)
T ss_pred CEEEeCChhhhHHHHHHHHHHhcCCCEEEEcCcccCC
Confidence 588998766 899999888876544577777777655
No 82
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=89.39 E-value=0.75 Score=31.82 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=20.2
Q ss_pred HHHHHHHhhccCCCcEEEEeCCCc-hHHHH
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSGA-RSLHA 95 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g~-ra~~~ 95 (137)
++...+......++.|++.|..|. ||..+
T Consensus 93 ~~v~~i~~~~~~g~kVvVHC~~GigRSgtv 122 (180)
T COG2453 93 KIVDFIEEALSKGKKVVVHCQGGIGRSGTV 122 (180)
T ss_pred HHHHHHHHHHhcCCeEEEEcCCCCchHHHH
Confidence 344455544677789999999987 66554
No 83
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=88.49 E-value=0.64 Score=31.60 Aligned_cols=42 Identities=17% Similarity=0.190 Sum_probs=24.2
Q ss_pred ccCCCcEEEEe-C----CCchHHHHHHHHHHCCccceeeccccHHHH
Q 032621 76 CKEEDRLVVGC-Q----SGARSLHATADLLGAGFKHVSNFGGGHMAW 117 (137)
Q Consensus 76 ~~~~~~iv~~c-~----~g~ra~~~~~~l~~~G~~~v~~l~GG~~~w 117 (137)
++++..+++++ . .|.....++..|+++|..+...||||-..-
T Consensus 97 ~~~~g~l~l~~vdg~~~~g~tl~ela~~l~~lG~~~AinLDGGgSs~ 143 (170)
T PF09992_consen 97 VTADGKLLLIVVDGRQSAGMTLDELAQLLKSLGCVDAINLDGGGSST 143 (170)
T ss_dssp E-TTSEEEEEEE----S--B-HHHHHHHHHHHT-SEEEE---GGG--
T ss_pred EeCCCcEEEEEEcCCcCCCCCHHHHHHHHHHcCcCeEEEecCCcceE
Confidence 44555554444 4 367788999999999999999999997664
No 84
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=88.32 E-value=1.8 Score=29.58 Aligned_cols=32 Identities=25% Similarity=0.480 Sum_probs=25.2
Q ss_pred cCCCcEEEEeCCCc---hHHHHHHHHHHCCccceee
Q 032621 77 KEEDRLVVGCQSGA---RSLHATADLLGAGFKHVSN 109 (137)
Q Consensus 77 ~~~~~iv~~c~~g~---ra~~~~~~l~~~G~~~v~~ 109 (137)
.+..+|+++|..|. .+..++++|...|++ |.+
T Consensus 23 ~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~-V~v 57 (169)
T PF03853_consen 23 PKGPRVLILCGPGNNGGDGLVAARHLANRGYN-VTV 57 (169)
T ss_dssp CTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCE-EEE
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHHCCCe-EEE
Confidence 67888999999875 578889999999997 665
No 85
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=86.20 E-value=1.4 Score=28.58 Aligned_cols=34 Identities=18% Similarity=0.234 Sum_probs=23.9
Q ss_pred cEEEEeCCCc-hHHHHHHHHHHCCccceeeccccH
Q 032621 81 RLVVGCQSGA-RSLHATADLLGAGFKHVSNFGGGH 114 (137)
Q Consensus 81 ~iv~~c~~g~-ra~~~~~~l~~~G~~~v~~l~GG~ 114 (137)
.|+|+|.+.. ||..+..+|+.++-+++.+...|.
T Consensus 2 ~vlfvC~~N~cRS~mAEa~~~~~~~~~~~v~SAG~ 36 (126)
T TIGR02689 2 KVMFVCKRNSCRSQMAEGFAKTLGAGNIAVTSAGL 36 (126)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHhcCCCEEEEcCcC
Confidence 5888998765 888888888876544555555554
No 86
>PRK10126 tyrosine phosphatase; Provisional
Probab=85.60 E-value=1.1 Score=29.97 Aligned_cols=37 Identities=22% Similarity=0.121 Sum_probs=27.6
Q ss_pred CcEEEEeCCCc-hHHHHHHHHHHCCccceeeccccHHHH
Q 032621 80 DRLVVGCQSGA-RSLHATADLLGAGFKHVSNFGGGHMAW 117 (137)
Q Consensus 80 ~~iv~~c~~g~-ra~~~~~~l~~~G~~~v~~l~GG~~~w 117 (137)
..|+|+|.+.. ||..+...|+..+- .+.+...|..+|
T Consensus 3 ~~iLFVC~gN~cRSpmAEa~~~~~~~-~~~v~SAG~~~~ 40 (147)
T PRK10126 3 NNILVVCVGNICRSPTAERLLQRYHP-ELKVESAGLGAL 40 (147)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcC-CeEEEeeeccCC
Confidence 46999999876 99999999988763 355566666444
No 87
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=83.20 E-value=1.6 Score=29.03 Aligned_cols=37 Identities=19% Similarity=0.082 Sum_probs=27.1
Q ss_pred CcEEEEeCCCc-hHHHHHHHHHHCCccceeeccccHHHH
Q 032621 80 DRLVVGCQSGA-RSLHATADLLGAGFKHVSNFGGGHMAW 117 (137)
Q Consensus 80 ~~iv~~c~~g~-ra~~~~~~l~~~G~~~v~~l~GG~~~w 117 (137)
+.|+|+|.+.. ||..+...|+...- ++.+...|..+|
T Consensus 3 ~~ILfVC~gN~cRSpmAEa~~~~~~~-~~~v~SaG~~~~ 40 (144)
T PRK11391 3 NSILVVCTGNICRSPIGERLLRKRLP-GVKVKSAGVHGL 40 (144)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcC-CeEEEcccccCC
Confidence 46999998766 99999999987653 355666666544
No 88
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=82.82 E-value=4.7 Score=28.66 Aligned_cols=31 Identities=32% Similarity=0.537 Sum_probs=24.8
Q ss_pred CCcEEEEeCCCc---hHHHHHHHHHHCCccceeec
Q 032621 79 EDRLVVGCQSGA---RSLHATADLLGAGFKHVSNF 110 (137)
Q Consensus 79 ~~~iv~~c~~g~---ra~~~~~~l~~~G~~~v~~l 110 (137)
...|+++|..|. -...+|++|...|++ |.++
T Consensus 49 ~~~v~vlcG~GnNGGDG~VaAR~L~~~G~~-V~v~ 82 (203)
T COG0062 49 ARRVLVLCGPGNNGGDGLVAARHLKAAGYA-VTVL 82 (203)
T ss_pred CCEEEEEECCCCccHHHHHHHHHHHhCCCc-eEEE
Confidence 457999999765 588999999999986 6543
No 89
>PRK13530 arsenate reductase; Provisional
Probab=82.67 E-value=2.4 Score=27.83 Aligned_cols=35 Identities=14% Similarity=0.012 Sum_probs=25.2
Q ss_pred CcEEEEeCCCc-hHHHHHHHHHHCCccceeeccccH
Q 032621 80 DRLVVGCQSGA-RSLHATADLLGAGFKHVSNFGGGH 114 (137)
Q Consensus 80 ~~iv~~c~~g~-ra~~~~~~l~~~G~~~v~~l~GG~ 114 (137)
+.|+|+|.+.. ||..+..+++.+.-+++.+...|.
T Consensus 4 ~~vLFvC~~N~cRS~mAEal~~~~~~~~~~v~SAG~ 39 (133)
T PRK13530 4 KTIYFLCTGNSCRSQMAEGWGKQYLGDKWNVYSAGI 39 (133)
T ss_pred CEEEEEcCCchhHHHHHHHHHHHhcCCCEEEECCCC
Confidence 56999998766 888888888775434566666665
No 90
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=81.84 E-value=2 Score=28.20 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=26.8
Q ss_pred cEEEEeCCCc-hHHHHHHHHHHCCcc-ceeeccccHHHH
Q 032621 81 RLVVGCQSGA-RSLHATADLLGAGFK-HVSNFGGGHMAW 117 (137)
Q Consensus 81 ~iv~~c~~g~-ra~~~~~~l~~~G~~-~v~~l~GG~~~w 117 (137)
+|+|+|.+.. ||..+..+++...-+ ++.+...|...+
T Consensus 2 ~iLfvc~~N~~RS~mAEai~~~~~~~~~~~v~SaG~~~~ 40 (141)
T cd00115 2 KVLFVCTGNICRSPMAEAIFRHLAPKLDIEVDSAGTSGW 40 (141)
T ss_pred eEEEEecChhhhhHHHHHHHHHHhhhCCEEEECCCCCCc
Confidence 5899998766 888888888876433 566777776543
No 91
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=81.46 E-value=5.9 Score=27.06 Aligned_cols=75 Identities=15% Similarity=0.293 Sum_probs=32.7
Q ss_pred CEEEecCCh---HHHh----ccCCCCceeeCccccccCC-CCCCCChHHHHHHHhhcc-CCCcEEEEeCCCc-hHHHHHH
Q 032621 28 YGYLDVRTA---EEFK----EGHVDAAKIFNIPYMFNTP-EGRVKNPDFLKKVRSLCK-EEDRLVVGCQSGA-RSLHATA 97 (137)
Q Consensus 28 ~~viDvR~~---~e~~----~g~ipga~~inip~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~iv~~c~~g~-ra~~~~~ 97 (137)
..||.+|+. .++. .-.| ..++++...... ...+......+.+.-+++ ...||+++|..|. |...+..
T Consensus 34 KTII~L~~e~~~~~~~~f~~~~~I---~l~~~~~~~~~~~~~~~~~~~v~~aL~~ild~~n~PvLiHC~~G~~rTG~vvg 110 (164)
T PF03162_consen 34 KTIINLRPEPPSQDFLEFAEENGI---KLIHIPMSSSKDPWVPISEEQVAEALEIILDPRNYPVLIHCNHGKDRTGLVVG 110 (164)
T ss_dssp SEEEE--SS---HHHHHHHHHTT----EEEE-------GGG----HHHHHHHHHHHH-GGG-SEEEE-SSSSSHHHHHHH
T ss_pred ceEEEecCCCCCHHHHHHHhhcCc---eEEEeccccccCccccCCHHHHHHHHHHHhCCCCCCEEEEeCCCCcchhhHHH
Confidence 579999865 2221 1222 345665542221 122233334444333333 4579999999887 7777776
Q ss_pred HHHH-CCcc
Q 032621 98 DLLG-AGFK 105 (137)
Q Consensus 98 ~l~~-~G~~ 105 (137)
.|+. .||.
T Consensus 111 ~lRk~Q~W~ 119 (164)
T PF03162_consen 111 CLRKLQGWS 119 (164)
T ss_dssp HHHHHTTB-
T ss_pred HHHHHcCCC
Confidence 6665 6876
No 92
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=81.25 E-value=6 Score=27.96 Aligned_cols=34 Identities=18% Similarity=0.303 Sum_probs=25.8
Q ss_pred ccCCCcEEEEeCCCc---hHHHHHHHHHHCCccceeec
Q 032621 76 CKEEDRLVVGCQSGA---RSLHATADLLGAGFKHVSNF 110 (137)
Q Consensus 76 ~~~~~~iv~~c~~g~---ra~~~~~~l~~~G~~~v~~l 110 (137)
.+..++|+++|..|. .+..+|++|...|++ |+.+
T Consensus 42 ~~~~~~v~vl~G~GNNGGDGlv~AR~L~~~~v~-V~~~ 78 (205)
T TIGR00197 42 FPLAGHVIIFCGPGNNGGDGFVVARHLKGFGVE-VFLL 78 (205)
T ss_pred cCCCCeEEEEECCCCCccHHHHHHHHHHhCCCE-EEEE
Confidence 345678999999654 688889999888875 7655
No 93
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=79.96 E-value=3.6 Score=30.09 Aligned_cols=30 Identities=27% Similarity=0.469 Sum_probs=24.5
Q ss_pred CcEEEEeCCCc---hHHHHHHHHHHCCccceeec
Q 032621 80 DRLVVGCQSGA---RSLHATADLLGAGFKHVSNF 110 (137)
Q Consensus 80 ~~iv~~c~~g~---ra~~~~~~l~~~G~~~v~~l 110 (137)
++|+++|..|. .+..+|++|...||+ |.++
T Consensus 61 ~~V~VlcG~GNNGGDGlv~AR~L~~~G~~-V~v~ 93 (246)
T PLN03050 61 PRVLLVCGPGNNGGDGLVAARHLAHFGYE-VTVC 93 (246)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHHCCCe-EEEE
Confidence 67999999654 688999999999996 6644
No 94
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=79.34 E-value=7 Score=26.51 Aligned_cols=47 Identities=15% Similarity=0.119 Sum_probs=31.8
Q ss_pred HHHhhccCCCcEEEEeCCCc--hHHHHHHHHHH---CCccceeeccccHHHH
Q 032621 71 KVRSLCKEEDRLVVGCQSGA--RSLHATADLLG---AGFKHVSNFGGGHMAW 117 (137)
Q Consensus 71 ~~~~~~~~~~~iv~~c~~g~--ra~~~~~~l~~---~G~~~v~~l~GG~~~w 117 (137)
.+...++++..+|+.+..|. .|...|.++.. .|..++.++-||-.++
T Consensus 59 ~il~~i~~~~~~i~Ld~~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGG~~G~ 110 (155)
T PF02590_consen 59 RILKKIPPNDYVILLDERGKQLSSEEFAKKLERWMNQGKSDIVFIIGGADGL 110 (155)
T ss_dssp HHHCTSHTTSEEEEE-TTSEE--HHHHHHHHHHHHHTTS-EEEEEE-BTTB-
T ss_pred HHHhhccCCCEEEEEcCCCccCChHHHHHHHHHHHhcCCceEEEEEecCCCC
Confidence 34444677888888888886 68888888876 7888899999975443
No 95
>TIGR02691 arsC_pI258_fam arsenate reductase (thioredoxin). This family describes the well-studied thioredoxin-dependent arsenate reductase of Staphylococcus aureaus plasmid pI258 and other mechanistically similar arsenate reductases. The mechanism involves an intramolecular disulfide bond cascade, and aligned members of this family have four absolutely conserved Cys residues. This group of arsenate reductases belongs to the low-molecular weight protein-tyrosine phosphatase family (pfam01451), as does a group of glutathione/glutaredoxin type arsenate reductases (TIGR02689). At least two other, non-homologous groups of arsenate reductases involved in arsenical resistance are also known. This enzyme reduces arsenate to arsenite, which may be more toxic but which is more easily exported.
Probab=77.92 E-value=3.3 Score=27.01 Aligned_cols=33 Identities=15% Similarity=-0.000 Sum_probs=19.5
Q ss_pred EEEEeCCCc-hHHHHHHHHHHCCccceeeccccH
Q 032621 82 LVVGCQSGA-RSLHATADLLGAGFKHVSNFGGGH 114 (137)
Q Consensus 82 iv~~c~~g~-ra~~~~~~l~~~G~~~v~~l~GG~ 114 (137)
|+|+|.+.. ||..+..+++.+.-+++.+...|.
T Consensus 1 iLFvC~~N~~RS~mAea~~~~~~~~~~~v~SaG~ 34 (129)
T TIGR02691 1 IYFLCTGNSCRSQMAEGWGKKYLGDEWEVYSAGI 34 (129)
T ss_pred CEEEcCCchHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 467776654 677776666664323455555554
No 96
>PRK10565 putative carbohydrate kinase; Provisional
Probab=77.81 E-value=7.3 Score=31.55 Aligned_cols=33 Identities=18% Similarity=0.258 Sum_probs=25.5
Q ss_pred cCCCcEEEEeCCCc---hHHHHHHHHHHCCccceeec
Q 032621 77 KEEDRLVVGCQSGA---RSLHATADLLGAGFKHVSNF 110 (137)
Q Consensus 77 ~~~~~iv~~c~~g~---ra~~~~~~l~~~G~~~v~~l 110 (137)
...++|+++|..|. .+..+|++|...||+ |.++
T Consensus 58 ~~~~~v~vl~G~GNNGGDG~v~AR~L~~~G~~-V~v~ 93 (508)
T PRK10565 58 PDARHWLVLCGHGNNGGDGYVVARLAQAAGID-VTLL 93 (508)
T ss_pred CCCCeEEEEEcCCCchHHHHHHHHHHHHCCCc-eEEE
Confidence 44567999999765 578889999999996 6543
No 97
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=77.39 E-value=7.5 Score=28.86 Aligned_cols=32 Identities=19% Similarity=0.289 Sum_probs=22.7
Q ss_pred HHHHHHHhhccCCCcEEEEeCCCchHHH-HHHHHHH
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSGARSLH-ATADLLG 101 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g~ra~~-~~~~l~~ 101 (137)
++.+.+.+ ++.+++|+.|++.++.. .+..|..
T Consensus 31 e~l~~L~~---~g~~~iflTNn~~~s~~~~~~~L~~ 63 (269)
T COG0647 31 EALKRLKA---AGKPVIFLTNNSTRSREVVAARLSS 63 (269)
T ss_pred HHHHHHHH---cCCeEEEEeCCCCCCHHHHHHHHHh
Confidence 56666653 67888888888877666 6666666
No 98
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=77.00 E-value=7.8 Score=23.80 Aligned_cols=38 Identities=13% Similarity=0.081 Sum_probs=25.1
Q ss_pred cEEEEeCCCch-HHHHH----HHHHHCCccceeeccccHHHHHh
Q 032621 81 RLVVGCQSGAR-SLHAT----ADLLGAGFKHVSNFGGGHMAWVQ 119 (137)
Q Consensus 81 ~iv~~c~~g~r-a~~~~----~~l~~~G~~~v~~l~GG~~~w~~ 119 (137)
+|+++|++|.- |..++ ..|.+.|++ +.+....+.....
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~-~~v~~~~~~e~~~ 46 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIP-VELIQCRVNEIET 46 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCe-EEEEEecHHHHhh
Confidence 59999999984 44434 345668885 6666656655543
No 99
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=75.78 E-value=9 Score=30.71 Aligned_cols=30 Identities=30% Similarity=0.400 Sum_probs=24.3
Q ss_pred CcEEEEeCCCc---hHHHHHHHHHHCCccceeec
Q 032621 80 DRLVVGCQSGA---RSLHATADLLGAGFKHVSNF 110 (137)
Q Consensus 80 ~~iv~~c~~g~---ra~~~~~~l~~~G~~~v~~l 110 (137)
++|+++|..|. -+..+|++|...|++ |.++
T Consensus 60 ~~VlVlcG~GNNGGDGlv~AR~L~~~G~~-V~v~ 92 (462)
T PLN03049 60 RRVLALCGPGNNGGDGLVAARHLHHFGYK-PSIC 92 (462)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCc-eEEE
Confidence 67999999765 578889999999997 6543
No 100
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=75.77 E-value=4.5 Score=25.00 Aligned_cols=38 Identities=18% Similarity=0.200 Sum_probs=26.1
Q ss_pred CCcEEEEeCCCchHHHHHHHH----HHCCccceeeccccHHHH
Q 032621 79 EDRLVVGCQSGARSLHATADL----LGAGFKHVSNFGGGHMAW 117 (137)
Q Consensus 79 ~~~iv~~c~~g~ra~~~~~~l----~~~G~~~v~~l~GG~~~w 117 (137)
.+.|+++|.+|..+..++..+ .+.|++ +.+-..++...
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~-~~v~a~~~~~~ 44 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVP-VKIAAGSYGAA 44 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCc-EEEEEecHHHH
Confidence 467999999998776666554 457875 55555555544
No 101
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=74.37 E-value=5 Score=26.65 Aligned_cols=35 Identities=23% Similarity=0.167 Sum_probs=27.1
Q ss_pred CcEEEEeCCCc-hHHHHHHHHHHCCccceeeccccH
Q 032621 80 DRLVVGCQSGA-RSLHATADLLGAGFKHVSNFGGGH 114 (137)
Q Consensus 80 ~~iv~~c~~g~-ra~~~~~~l~~~G~~~v~~l~GG~ 114 (137)
..|+|+|.+.. ||..+-..++...-.++.+...|.
T Consensus 3 ~kVLFVC~gN~cRSpmAE~l~~~~~~~~~~v~SAGt 38 (139)
T COG0394 3 MKVLFVCTGNICRSPMAEALLRHLAPDNVEVDSAGT 38 (139)
T ss_pred ceEEEEcCCCcccCHHHHHHHHHhccCCeEEECCcc
Confidence 46899999876 999998888876446677777664
No 102
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=74.29 E-value=9.8 Score=31.18 Aligned_cols=30 Identities=27% Similarity=0.359 Sum_probs=24.3
Q ss_pred CcEEEEeCCCc---hHHHHHHHHHHCCccceeec
Q 032621 80 DRLVVGCQSGA---RSLHATADLLGAGFKHVSNF 110 (137)
Q Consensus 80 ~~iv~~c~~g~---ra~~~~~~l~~~G~~~v~~l 110 (137)
++|+++|..|. -+..+|++|...||+ |.++
T Consensus 136 ~~VlVlcGpGNNGGDGLVaAR~L~~~G~~-V~V~ 168 (544)
T PLN02918 136 SRVLAICGPGNNGGDGLVAARHLHHFGYK-PFVC 168 (544)
T ss_pred CEEEEEECCCcCHHHHHHHHHHHHHCCCc-eEEE
Confidence 57999999765 577889999999997 6654
No 103
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=73.79 E-value=6.1 Score=27.44 Aligned_cols=33 Identities=21% Similarity=0.203 Sum_probs=28.5
Q ss_pred CCCcEEEEeC---CCchHHHHHHHHHHCCccceeec
Q 032621 78 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSNF 110 (137)
Q Consensus 78 ~~~~iv~~c~---~g~ra~~~~~~l~~~G~~~v~~l 110 (137)
.++.|+|+++ +|.....++..|.+.|...|+++
T Consensus 151 ~~~~vllvDDV~TTGaTl~~~~~~L~~~Ga~~V~~~ 186 (190)
T TIGR00201 151 QGRNIVLVDDVVTTGATLHEIARLLLELGAASVQVW 186 (190)
T ss_pred CCCEEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEE
Confidence 3577999998 79999999999999999888765
No 104
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=73.23 E-value=5.8 Score=29.18 Aligned_cols=89 Identities=21% Similarity=0.241 Sum_probs=50.4
Q ss_pred eCHHHHHHHhhC----C-CEEEecCChHHHhccCCCCceeeCccccccCCCCCCCChHHHHHHHhhccCCCcEEEEeCCC
Q 032621 15 VDVRAAKNLLES----G-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSG 89 (137)
Q Consensus 15 is~~~~~~~~~~----~-~~viDvR~~~e~~~g~ipga~~inip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g 89 (137)
++.+++.++++. | -.+|.|++.+|.+...--|+..+-|-.-. ..+..++ .+-...+...++++ +++++.+|
T Consensus 142 L~~~~l~~l~~~a~~lGle~lVEVh~~~El~~al~~~a~iiGINnRd-L~tf~vd-~~~~~~l~~~ip~~--~~~iseSG 217 (254)
T PF00218_consen 142 LSDDQLEELLELAHSLGLEALVEVHNEEELERALEAGADIIGINNRD-LKTFEVD-LNRTEELAPLIPKD--VIVISESG 217 (254)
T ss_dssp SGHHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEESBC-TTTCCBH-THHHHHHHCHSHTT--SEEEEESS
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEECCHHHHHHHHHcCCCEEEEeCcc-ccCcccC-hHHHHHHHhhCccc--eeEEeecC
Confidence 445555555432 4 57999999999876433344222222110 0111121 13344555555544 67888899
Q ss_pred chHHHHHHHHHHCCccce
Q 032621 90 ARSLHATADLLGAGFKHV 107 (137)
Q Consensus 90 ~ra~~~~~~l~~~G~~~v 107 (137)
..+..-+..|...|++-+
T Consensus 218 I~~~~d~~~l~~~G~dav 235 (254)
T PF00218_consen 218 IKTPEDARRLARAGADAV 235 (254)
T ss_dssp -SSHHHHHHHCTTT-SEE
T ss_pred CCCHHHHHHHHHCCCCEE
Confidence 999999999999999844
No 105
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=73.19 E-value=8.6 Score=26.14 Aligned_cols=47 Identities=17% Similarity=0.156 Sum_probs=33.6
Q ss_pred HHHhhccCCCcEEEEeCCCc--hHHHHHHHHHH---CCccceeeccccHHHH
Q 032621 71 KVRSLCKEEDRLVVGCQSGA--RSLHATADLLG---AGFKHVSNFGGGHMAW 117 (137)
Q Consensus 71 ~~~~~~~~~~~iv~~c~~g~--ra~~~~~~l~~---~G~~~v~~l~GG~~~w 117 (137)
.+...+++++-+|+.|..|. .|...|..+.. .|..++.++-||-.++
T Consensus 59 ~il~~l~~~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGGa~G~ 110 (157)
T PRK00103 59 RILAALPKGARVIALDERGKQLSSEEFAQELERWRDDGRSDVAFVIGGADGL 110 (157)
T ss_pred HHHhhCCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCccEEEEEcCcccc
Confidence 34333566677888888886 68888888865 4656799999986554
No 106
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=73.00 E-value=5.1 Score=25.28 Aligned_cols=37 Identities=11% Similarity=0.046 Sum_probs=24.9
Q ss_pred CcEEEEeCCCchHHHHHHHH----HHCCccceeeccccHHHH
Q 032621 80 DRLVVGCQSGARSLHATADL----LGAGFKHVSNFGGGHMAW 117 (137)
Q Consensus 80 ~~iv~~c~~g~ra~~~~~~l----~~~G~~~v~~l~GG~~~w 117 (137)
+.|+++|.+|..+..++..+ ++.|++ +.+-..+....
T Consensus 2 kkILlvCg~G~STSlla~k~k~~~~e~gi~-~~i~a~~~~e~ 42 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKTTEYLKEQGKD-IEVDAITATEG 42 (104)
T ss_pred cEEEEECCCchHHHHHHHHHHHHHHHCCCc-eEEEEecHHHH
Confidence 36899999999776666554 557875 55555555443
No 107
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=72.78 E-value=13 Score=25.95 Aligned_cols=45 Identities=18% Similarity=0.254 Sum_probs=25.7
Q ss_pred HHHHHHHhhccCCCcEEEEeCCC-----------ch-------HHHHHHHHHHCCccceeeccc
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSG-----------AR-------SLHATADLLGAGFKHVSNFGG 112 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g-----------~r-------a~~~~~~l~~~G~~~v~~l~G 112 (137)
.|...+.+. ++++|||++..-. .+ ...+...|++.|.+|+++++|
T Consensus 82 ~fv~~iR~~-hP~tPIllv~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~l~~~g~~nl~~l~g 144 (178)
T PF14606_consen 82 GFVKTIREA-HPDTPILLVSPIPYPAGYFDNSRGETVEEFREALREAVEQLRKEGDKNLYYLDG 144 (178)
T ss_dssp HHHHHHHTT--SSS-EEEEE----TTTTS--TTS--HHHHHHHHHHHHHHHHHTT-TTEEEE-H
T ss_pred HHHHHHHHh-CCCCCEEEEecCCccccccCchHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCc
Confidence 455566555 7899999987411 00 233445567789999999997
No 108
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=72.78 E-value=5.4 Score=32.60 Aligned_cols=37 Identities=19% Similarity=0.254 Sum_probs=32.2
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHHCCccceeeccccHH
Q 032621 78 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM 115 (137)
Q Consensus 78 ~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~~ 115 (137)
-+.+|+|+.+.-..+..+|..|.+.||+ ++.|.||-.
T Consensus 516 ~~ppiIIFvN~kk~~d~lAk~LeK~g~~-~~tlHg~k~ 552 (673)
T KOG0333|consen 516 FDPPIIIFVNTKKGADALAKILEKAGYK-VTTLHGGKS 552 (673)
T ss_pred CCCCEEEEEechhhHHHHHHHHhhccce-EEEeeCCcc
Confidence 3677999999888999999999999996 999999853
No 109
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=71.96 E-value=7.3 Score=30.93 Aligned_cols=53 Identities=19% Similarity=0.143 Sum_probs=35.5
Q ss_pred HHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHH-C----CccceeeccccHHHHHh
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLG-A----GFKHVSNFGGGHMAWVQ 119 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~-~----G~~~v~~l~GG~~~w~~ 119 (137)
++.+++.+..+.....+++|++|..|-.+|-.|.. . |-..|..+.|+|.+|..
T Consensus 121 ~lAe~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~ 178 (442)
T TIGR03372 121 LLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSL 178 (442)
T ss_pred HHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCCH
Confidence 45555555533333578889999988777766654 2 65567788888877654
No 110
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=70.82 E-value=19 Score=22.37 Aligned_cols=37 Identities=22% Similarity=0.270 Sum_probs=29.3
Q ss_pred cCCCcEEEEeCCCchHHHHHHHHHHCCccceeeccccH
Q 032621 77 KEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGH 114 (137)
Q Consensus 77 ~~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~ 114 (137)
..+.+++++|..-..+...+..|.+.+.. +..+.|+.
T Consensus 26 ~~~~~~lvf~~~~~~~~~~~~~l~~~~~~-~~~~~~~~ 62 (131)
T cd00079 26 KKGGKVLIFCPSKKMLDELAELLRKPGIK-VAALHGDG 62 (131)
T ss_pred cCCCcEEEEeCcHHHHHHHHHHHHhcCCc-EEEEECCC
Confidence 35678999999888888888899887764 77787764
No 111
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=70.43 E-value=7.8 Score=30.40 Aligned_cols=54 Identities=11% Similarity=0.099 Sum_probs=37.7
Q ss_pred HHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHH--CCccceeeccccHHHHHhC
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLG--AGFKHVSNFGGGHMAWVQN 120 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~--~G~~~v~~l~GG~~~w~~~ 120 (137)
++.+++.+..++...-+++|++|..|-.++-.+.. .|-+++..++|+|.+|...
T Consensus 90 ~la~~L~~~~~~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~ 145 (433)
T PRK08117 90 KLAEELAEITPGGLDCFFFSNSGAEAIEGALKLAKHVTKRPYIISFTGCFHGRTLG 145 (433)
T ss_pred HHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEECCCcCCcCHH
Confidence 56666666543444578889999988777766644 3666788888888877543
No 112
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=70.37 E-value=6.6 Score=24.21 Aligned_cols=36 Identities=8% Similarity=0.135 Sum_probs=24.6
Q ss_pred cEEEEeCCCchHHHHHHHH----HHCCccceeeccccHHHH
Q 032621 81 RLVVGCQSGARSLHATADL----LGAGFKHVSNFGGGHMAW 117 (137)
Q Consensus 81 ~iv~~c~~g~ra~~~~~~l----~~~G~~~v~~l~GG~~~w 117 (137)
+|+++|.+|..+..++..+ ++.|++ +.+-..++...
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~-~~v~~~~~~~~ 40 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGID-AEIEAVPESEL 40 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCc-eEEEEecHHHH
Confidence 4899999999776666554 457775 55555555544
No 113
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=69.53 E-value=6.6 Score=24.56 Aligned_cols=36 Identities=17% Similarity=0.180 Sum_probs=25.4
Q ss_pred cEEEEeCCCchHHHHHHH----HHHCCccceeeccccHHHH
Q 032621 81 RLVVGCQSGARSLHATAD----LLGAGFKHVSNFGGGHMAW 117 (137)
Q Consensus 81 ~iv~~c~~g~ra~~~~~~----l~~~G~~~v~~l~GG~~~w 117 (137)
.|+++|++|..|..++.. +++.|++ +.+...+....
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~-~~i~a~~~~e~ 41 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVP-LEAAAGAYGSH 41 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCc-EEEEEeeHHHH
Confidence 489999999887777665 4557885 66666665554
No 114
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=69.28 E-value=7.9 Score=23.03 Aligned_cols=32 Identities=25% Similarity=0.375 Sum_probs=20.8
Q ss_pred cEEEEeCCCchHHHHH-H----HHHHCCccceeecccc
Q 032621 81 RLVVGCQSGARSLHAT-A----DLLGAGFKHVSNFGGG 113 (137)
Q Consensus 81 ~iv~~c~~g~ra~~~~-~----~l~~~G~~~v~~l~GG 113 (137)
+|+++|.+|..+...+ . .+.+.|++ +....+.
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~-~~~~~~~ 37 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIE-VEVSAGS 37 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTEC-EEEEEEE
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCc-eEEEEec
Confidence 4899999998654444 3 45668876 5444443
No 115
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=68.61 E-value=22 Score=26.87 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=32.7
Q ss_pred HHHHHHhhC-CCEEEecCChHHHhccCCCCceeeCccccccCCCCCCCChHHHHHHHhhccCCCcEEEEeCCCc
Q 032621 18 RAAKNLLES-GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGA 90 (137)
Q Consensus 18 ~~~~~~~~~-~~~viDvR~~~e~~~g~ipga~~inip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~ 90 (137)
+++.+++.+ +..+.|.-.-.-.....|||+ .+....+.. .++.|+|+.+...
T Consensus 13 ~~~~e~l~~~DtfifDcDGVlW~g~~~ipGs------------------~e~l~~L~~---~gK~i~fvTNNSt 65 (306)
T KOG2882|consen 13 EEARELLDSFDTFIFDCDGVLWLGEKPIPGS------------------PEALNLLKS---LGKQIIFVTNNST 65 (306)
T ss_pred HHHHHHHhhcCEEEEcCCcceeecCCCCCCh------------------HHHHHHHHH---cCCcEEEEeCCCc
Confidence 556666665 467888776555555677777 355555554 3577777776543
No 116
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=67.94 E-value=7.5 Score=31.05 Aligned_cols=37 Identities=27% Similarity=0.152 Sum_probs=32.1
Q ss_pred cCCCcEEEEeCC---CchHHHHHHHHHHCCccceeecccc
Q 032621 77 KEEDRLVVGCQS---GARSLHATADLLGAGFKHVSNFGGG 113 (137)
Q Consensus 77 ~~~~~iv~~c~~---g~ra~~~~~~l~~~G~~~v~~l~GG 113 (137)
-++++||+++++ |..+......|++.|-+.|++--+.
T Consensus 346 v~GKrVvlVDDSIVRGTTsr~IV~mlReAGAkEVHvrias 385 (470)
T COG0034 346 VKGKRVVLVDDSIVRGTTSRRIVQMLREAGAKEVHVRIAS 385 (470)
T ss_pred hCCCeEEEEccccccCccHHHHHHHHHHhCCCEEEEEecC
Confidence 368999999995 8899999999999999988876653
No 117
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=66.93 E-value=3.7 Score=31.40 Aligned_cols=36 Identities=14% Similarity=0.008 Sum_probs=29.3
Q ss_pred ceeeeCHHHHHHHhh-------CCCEEEecCChHHHhccCCCCc
Q 032621 11 EVITVDVRAAKNLLE-------SGYGYLDVRTAEEFKEGHVDAA 47 (137)
Q Consensus 11 ~~~~is~~~~~~~~~-------~~~~viDvR~~~e~~~g~ipga 47 (137)
....++++++.+.++ .+..+||||.+. |+..++|+-
T Consensus 275 ~~~~i~~~~~~~~l~~~~~~~~~~~~ll~vr~~~-~~~~~~~~g 317 (339)
T PRK07688 275 HKEEYDLEELAELLRDRGLDVNVNPYLLSFSLEE-KRLVLFKDG 317 (339)
T ss_pred CcCccCHHHHHHHHHhcccccCCCcEEEEEecCC-eEEEEEcCC
Confidence 346799999998883 347899999988 998999875
No 118
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=66.89 E-value=40 Score=28.63 Aligned_cols=89 Identities=21% Similarity=0.218 Sum_probs=54.5
Q ss_pred eCHHHHHHHhhC----C-CEEEecCChHHHhccCCCCceeeCccccccCCCCCCCChHHHHHHHhhccCCCcEEEEeCCC
Q 032621 15 VDVRAAKNLLES----G-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSG 89 (137)
Q Consensus 15 is~~~~~~~~~~----~-~~viDvR~~~e~~~g~ipga~~inip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g 89 (137)
++.+++.++++. + -.||.|++.+|.+..---|+..+-|-.-.+ .+..+ +.+-..++...++ +.+++++-+|
T Consensus 144 L~~~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGINnRdL-~tf~v-d~~~t~~L~~~ip--~~~~~VsESG 219 (695)
T PRK13802 144 LDDAQLKHLLDLAHELGMTVLVETHTREEIERAIAAGAKVIGINARNL-KDLKV-DVNKYNELAADLP--DDVIKVAESG 219 (695)
T ss_pred cCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEeCCCC-cccee-CHHHHHHHHhhCC--CCcEEEEcCC
Confidence 445556665543 4 579999999998764444553332221100 11111 2234445555554 3578888999
Q ss_pred chHHHHHHHHHHCCccce
Q 032621 90 ARSLHATADLLGAGFKHV 107 (137)
Q Consensus 90 ~ra~~~~~~l~~~G~~~v 107 (137)
..+..-...|...|++-|
T Consensus 220 I~~~~d~~~l~~~G~dav 237 (695)
T PRK13802 220 VFGAVEVEDYARAGADAV 237 (695)
T ss_pred CCCHHHHHHHHHCCCCEE
Confidence 999999999999999744
No 119
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=65.83 E-value=10 Score=26.19 Aligned_cols=33 Identities=15% Similarity=0.071 Sum_probs=27.8
Q ss_pred CCCcEEEEeC---CCchHHHHHHHHHHCCccceeec
Q 032621 78 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSNF 110 (137)
Q Consensus 78 ~~~~iv~~c~---~g~ra~~~~~~l~~~G~~~v~~l 110 (137)
+++.|+++++ +|.....++..|++.|..+|+.+
T Consensus 96 ~gk~VLIVDDIidTG~Tl~~~~~~Lk~~Ga~~V~~a 131 (181)
T PRK09162 96 KGRTVLVVDDILDEGHTLAAIRDRCLEMGAAEVYSA 131 (181)
T ss_pred CCCEEEEEccccCcHHHHHHHHHHHHhCCCCEEEEE
Confidence 5678999887 78889999999999998887754
No 120
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=65.79 E-value=60 Score=25.08 Aligned_cols=90 Identities=20% Similarity=0.189 Sum_probs=52.0
Q ss_pred eCHHHHHHHhhC----C-CEEEecCChHHHhccC-CCCceeeCccccccCCCCCCCChHHHHHHHh-----hccCCCcEE
Q 032621 15 VDVRAAKNLLES----G-YGYLDVRTAEEFKEGH-VDAAKIFNIPYMFNTPEGRVKNPDFLKKVRS-----LCKEEDRLV 83 (137)
Q Consensus 15 is~~~~~~~~~~----~-~~viDvR~~~e~~~g~-ipga~~inip~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~iv 83 (137)
++.+++.++++. + -.||.|++.+|.+..- +.|+..|-|-.-.+ .+..++ -+-..++.. .++ .+.++
T Consensus 214 L~~~~L~~l~~~A~~LGme~LVEVH~~~ElerAl~~~ga~iIGINNRdL-~Tf~vD-l~~t~~L~~~~~~~~i~-~~~~~ 290 (338)
T PLN02460 214 LPDLDIKYMLKICKSLGMAALIEVHDEREMDRVLGIEGVELIGINNRSL-ETFEVD-ISNTKKLLEGERGEQIR-EKGII 290 (338)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCCEEEEeCCCC-CcceEC-HHHHHHHhhhccccccC-CCCeE
Confidence 445555555542 4 5799999999986522 22443232221100 111111 122333433 222 24578
Q ss_pred EEeCCCchHHHHHHHHHHCCccce
Q 032621 84 VGCQSGARSLHATADLLGAGFKHV 107 (137)
Q Consensus 84 ~~c~~g~ra~~~~~~l~~~G~~~v 107 (137)
+++-+|.....-...+...|++-|
T Consensus 291 ~VsESGI~t~~Dv~~l~~~GadAv 314 (338)
T PLN02460 291 VVGESGLFTPDDVAYVQNAGVKAV 314 (338)
T ss_pred EEECCCCCCHHHHHHHHHCCCCEE
Confidence 899999999999999999999744
No 121
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=65.65 E-value=14 Score=23.21 Aligned_cols=33 Identities=24% Similarity=0.180 Sum_probs=27.5
Q ss_pred cCCCcEEEEeC---CCchHHHHHHHHHHCCccceee
Q 032621 77 KEEDRLVVGCQ---SGARSLHATADLLGAGFKHVSN 109 (137)
Q Consensus 77 ~~~~~iv~~c~---~g~ra~~~~~~l~~~G~~~v~~ 109 (137)
.+++.|+++++ +|.....+...|++.|.+.|..
T Consensus 86 ~~gk~vliVDDvi~tG~Tl~~~~~~L~~~g~~~v~~ 121 (125)
T PF00156_consen 86 IKGKRVLIVDDVIDTGGTLKEAIELLKEAGAKVVGV 121 (125)
T ss_dssp GTTSEEEEEEEEESSSHHHHHHHHHHHHTTBSEEEE
T ss_pred ccceeEEEEeeeEcccHHHHHHHHHHHhCCCcEEEE
Confidence 46788999886 7999999999999999876543
No 122
>PRK06148 hypothetical protein; Provisional
Probab=65.32 E-value=12 Score=33.06 Aligned_cols=54 Identities=7% Similarity=0.060 Sum_probs=39.1
Q ss_pred HHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHH--CCccceeeccccHHHHHhC
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLG--AGFKHVSNFGGGHMAWVQN 120 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~--~G~~~v~~l~GG~~~w~~~ 120 (137)
++.+++.+..+.+-..+++|++|..|-.+|-.|.. -|-++|..+.|||.+|...
T Consensus 667 ~lAe~L~~~~p~~~~~v~f~nSGsEA~e~AlklAr~~tGr~~ii~~~~~YHG~t~~ 722 (1013)
T PRK06148 667 AYAERLTATLPDGLTVAFFVNSGSEANSLALRLARAHTGQRDAIVLDHAYHGTTTE 722 (1013)
T ss_pred HHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHhcCCCeEEEEcCCccCCCcc
Confidence 45556655544334578999999998888877765 4767788889999888643
No 123
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=65.24 E-value=10 Score=22.73 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=21.2
Q ss_pred CcEEEEeCCCchHHHH-H----HHHHHCCccceeeccccHHHH
Q 032621 80 DRLVVGCQSGARSLHA-T----ADLLGAGFKHVSNFGGGHMAW 117 (137)
Q Consensus 80 ~~iv~~c~~g~ra~~~-~----~~l~~~G~~~v~~l~GG~~~w 117 (137)
+.|+++|++|.-++.. . ..+.+.|.. +.+-..++...
T Consensus 1 ~kilvvCg~G~gtS~ml~~ki~~~~~~~~~~-~~v~~~~~~~~ 42 (87)
T cd05567 1 KKIVFACDAGMGSSAMGASVLRKKLKKAGLE-IPVTNSAIDEL 42 (87)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHHCCCc-eEEEEcchhhC
Confidence 3689999999854443 3 344556654 33444444443
No 124
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=65.19 E-value=10 Score=23.87 Aligned_cols=26 Identities=8% Similarity=0.146 Sum_probs=19.2
Q ss_pred CcEEEEeCCCchHHHHHHHH----HHCCcc
Q 032621 80 DRLVVGCQSGARSLHATADL----LGAGFK 105 (137)
Q Consensus 80 ~~iv~~c~~g~ra~~~~~~l----~~~G~~ 105 (137)
+.|+++|+.|..+...+..+ ++.|++
T Consensus 4 kkIllvC~~G~sTSll~~km~~~~~~~gi~ 33 (106)
T PRK10499 4 KHIYLFCSAGMSTSLLVSKMRAQAEKYEVP 33 (106)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHCCCC
Confidence 56999999999887777443 446664
No 125
>PRK06917 hypothetical protein; Provisional
Probab=64.66 E-value=15 Score=29.19 Aligned_cols=53 Identities=11% Similarity=0.042 Sum_probs=35.6
Q ss_pred HHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHH-----CCc---cceeeccccHHHHHh
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLG-----AGF---KHVSNFGGGHMAWVQ 119 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~-----~G~---~~v~~l~GG~~~w~~ 119 (137)
++.+.+.+..+.....+++|++|..|-.+|-.|.. .|+ +.|..+.|||.+|..
T Consensus 78 ~lae~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~ 138 (447)
T PRK06917 78 KLAKKLSDLSPGDLNWSFFVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITM 138 (447)
T ss_pred HHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccH
Confidence 46666666544333578899999988877766653 243 457778888887754
No 126
>PTZ00110 helicase; Provisional
Probab=64.23 E-value=19 Score=29.39 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=31.6
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHHCCccceeeccccHH
Q 032621 78 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM 115 (137)
Q Consensus 78 ~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~~ 115 (137)
....++|+|++-..+..++..|...|+. +..+.|+..
T Consensus 376 ~~~k~LIF~~t~~~a~~l~~~L~~~g~~-~~~ihg~~~ 412 (545)
T PTZ00110 376 DGDKILIFVETKKGADFLTKELRLDGWP-ALCIHGDKK 412 (545)
T ss_pred cCCeEEEEecChHHHHHHHHHHHHcCCc-EEEEECCCc
Confidence 5678999999988999999999999996 777888754
No 127
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=63.87 E-value=12 Score=26.71 Aligned_cols=45 Identities=27% Similarity=0.468 Sum_probs=29.4
Q ss_pred ccCCCcE-EEEeCCCchHHHHH--------------------HHHHHCCccceeeccc-cHHHHHhC
Q 032621 76 CKEEDRL-VVGCQSGARSLHAT--------------------ADLLGAGFKHVSNFGG-GHMAWVQN 120 (137)
Q Consensus 76 ~~~~~~i-v~~c~~g~ra~~~~--------------------~~l~~~G~~~v~~l~G-G~~~w~~~ 120 (137)
+.++..| =|-|.+|+.++..+ ..|..+||.||.+..| |..+|...
T Consensus 70 ~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~ 136 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEE 136 (209)
T ss_pred CCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCC
Confidence 5555554 45566777654433 3478899999886655 77777653
No 128
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=63.74 E-value=33 Score=23.36 Aligned_cols=48 Identities=17% Similarity=0.047 Sum_probs=32.8
Q ss_pred HHHHHHhhccCCCcEEEEeCCCc--hHHHHHHHHHH---CCccceeeccccHHH
Q 032621 68 FLKKVRSLCKEEDRLVVGCQSGA--RSLHATADLLG---AGFKHVSNFGGGHMA 116 (137)
Q Consensus 68 ~~~~~~~~~~~~~~iv~~c~~g~--ra~~~~~~l~~---~G~~~v~~l~GG~~~ 116 (137)
..+.+...+.++..+|+.+-.|. .|..+|..|.. .| .++.++-||-.+
T Consensus 56 E~~~il~~i~~~~~vi~Ld~~Gk~~sSe~fA~~l~~~~~~G-~~i~f~IGG~~G 108 (155)
T COG1576 56 EGEAILAAIPKGSYVVLLDIRGKALSSEEFADFLERLRDDG-RDISFLIGGADG 108 (155)
T ss_pred HHHHHHHhcCCCCeEEEEecCCCcCChHHHHHHHHHHHhcC-CeEEEEEeCccc
Confidence 33444444677777777766665 68888887764 67 779999888544
No 129
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=63.16 E-value=15 Score=30.67 Aligned_cols=48 Identities=21% Similarity=0.226 Sum_probs=37.8
Q ss_pred HHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHHCCccceeeccccHH
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM 115 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~~ 115 (137)
.+...+......+..++|+|++-.++...+..|...|++ +..+.|+..
T Consensus 434 ~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~-~~~~h~~~~ 481 (652)
T PRK05298 434 DLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIK-VRYLHSDID 481 (652)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhccee-EEEEECCCC
Confidence 455556555567788999999988999999999999995 777777644
No 130
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=63.06 E-value=13 Score=28.06 Aligned_cols=32 Identities=19% Similarity=0.138 Sum_probs=27.4
Q ss_pred CCCcEEEEeC---CCchHHHHHHHHHHCCccceee
Q 032621 78 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSN 109 (137)
Q Consensus 78 ~~~~iv~~c~---~g~ra~~~~~~l~~~G~~~v~~ 109 (137)
+++.++++++ +|..-..+++.|++.|..+|+.
T Consensus 210 ~Gr~vIIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~ 244 (301)
T PRK07199 210 AGRTPVLVDDIVSTGRTLIEAARQLRAAGAASPDC 244 (301)
T ss_pred CCCEEEEEecccCcHHHHHHHHHHHHHCCCcEEEE
Confidence 5778899887 7889999999999999987764
No 131
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=62.94 E-value=12 Score=29.47 Aligned_cols=33 Identities=33% Similarity=0.223 Sum_probs=28.8
Q ss_pred CCCcEEEEeCC---CchHHHHHHHHHHCCccceeec
Q 032621 78 EEDRLVVGCQS---GARSLHATADLLGAGFKHVSNF 110 (137)
Q Consensus 78 ~~~~iv~~c~~---g~ra~~~~~~l~~~G~~~v~~l 110 (137)
.+++||+++++ |..+....+.|++.|-++|++-
T Consensus 355 ~GKrvvlVDDSIVRGtTs~~IVkmlreaGAkeVh~r 390 (474)
T KOG0572|consen 355 EGKRVVLVDDSIVRGTTSSPIVKMLREAGAKEVHIR 390 (474)
T ss_pred CCceEEEEecceeccCchHHHHHHHHHcCCcEEEEE
Confidence 57899999995 8889999999999999988753
No 132
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=62.50 E-value=20 Score=28.07 Aligned_cols=53 Identities=13% Similarity=0.102 Sum_probs=34.6
Q ss_pred HHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHH--------CCccceeeccccHHHHHh
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLG--------AGFKHVSNFGGGHMAWVQ 119 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~--------~G~~~v~~l~GG~~~w~~ 119 (137)
++.+.+.+..+.+-.-+++|++|..|-.+|-.+.. -|-++|..+.|||.+|..
T Consensus 89 ~la~~l~~~~p~~~~~v~f~~sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~ 149 (423)
T PRK05964 89 RLAQRLVALTPGGLDHVFFSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTI 149 (423)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccH
Confidence 45666655543333467888999887777666543 244567788998887654
No 133
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=61.03 E-value=22 Score=28.28 Aligned_cols=54 Identities=13% Similarity=0.058 Sum_probs=36.1
Q ss_pred HHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHHC-----C---ccceeeccccHHHHHhC
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGA-----G---FKHVSNFGGGHMAWVQN 120 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~~-----G---~~~v~~l~GG~~~w~~~ 120 (137)
++.+.+.+..+..-.-+++|++|..|-.+|-.|... | -++|..+.|+|.+|...
T Consensus 103 ~lae~L~~~~p~~~~~v~f~~SGseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~ 164 (460)
T PRK06916 103 LLAEKLIEVVPEGLKKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIG 164 (460)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHH
Confidence 456666655433334689999999887777666543 4 34577888888877543
No 134
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=60.46 E-value=16 Score=25.55 Aligned_cols=33 Identities=18% Similarity=0.157 Sum_probs=26.9
Q ss_pred CCCcEEEEeC---CCchHHHHHHHHHHCCccceeec
Q 032621 78 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSNF 110 (137)
Q Consensus 78 ~~~~iv~~c~---~g~ra~~~~~~l~~~G~~~v~~l 110 (137)
+++.++++++ +|..-..++..|++.|-.+|+.+
T Consensus 82 ~gk~~IIvDDiIdtg~Tl~~aA~~Lk~~GA~~V~~~ 117 (184)
T PF14572_consen 82 KGKICIIVDDIIDTGGTLIKAAELLKERGAKKVYAC 117 (184)
T ss_dssp TTSEEEEEEEEESSTHHHHHHHHHHHHTTESEEEEE
T ss_pred cCCeEeeecccccchHHHHHHHHHHHHcCCCEEEEE
Confidence 5677788776 78888899999999999888754
No 135
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=60.29 E-value=24 Score=26.03 Aligned_cols=45 Identities=18% Similarity=0.159 Sum_probs=38.0
Q ss_pred hHHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHHCCccceeec
Q 032621 66 PDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNF 110 (137)
Q Consensus 66 ~~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l 110 (137)
-+..+.+.+.+.++..+++||..-.+.......|++.||-++..+
T Consensus 175 W~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie~~ 219 (256)
T COG2519 175 WNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDIEAV 219 (256)
T ss_pred HHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccchhhh
Confidence 367777877788999999999998999999999999999765443
No 136
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=60.28 E-value=13 Score=21.20 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=16.2
Q ss_pred cEEEEeCCCc-hHHHHHHHHH----HCCcc
Q 032621 81 RLVVGCQSGA-RSLHATADLL----GAGFK 105 (137)
Q Consensus 81 ~iv~~c~~g~-ra~~~~~~l~----~~G~~ 105 (137)
.|+++|++|. .+..+...|+ +.++.
T Consensus 1 ~il~vc~~G~~~s~~l~~~l~~~~~~~~~~ 30 (84)
T cd00133 1 KILVVCGSGIGSSSMLAEKLEKAAKELGIE 30 (84)
T ss_pred CEEEECCCcHhHHHHHHHHHHHHHHHCCCe
Confidence 4789999995 5555555554 45553
No 137
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=60.05 E-value=31 Score=22.61 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=10.3
Q ss_pred HHHHHHHHHCCccceeecccc
Q 032621 93 LHATADLLGAGFKHVSNFGGG 113 (137)
Q Consensus 93 ~~~~~~l~~~G~~~v~~l~GG 113 (137)
......|++.|.+++.++.||
T Consensus 71 ~~~~~~L~~~g~~~i~vivGG 91 (132)
T TIGR00640 71 PALRKELDKLGRPDILVVVGG 91 (132)
T ss_pred HHHHHHHHhcCCCCCEEEEeC
Confidence 344444555555445555554
No 138
>PRK11595 DNA utilization protein GntX; Provisional
Probab=60.03 E-value=17 Score=26.09 Aligned_cols=33 Identities=15% Similarity=0.214 Sum_probs=28.3
Q ss_pred CCCcEEEEeC---CCchHHHHHHHHHHCCccceeec
Q 032621 78 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSNF 110 (137)
Q Consensus 78 ~~~~iv~~c~---~g~ra~~~~~~l~~~G~~~v~~l 110 (137)
.++.|+|+++ +|.....++..|++.|...|+.+
T Consensus 186 ~~~~vllvDDv~tTG~Tl~~~~~~L~~~g~~~V~~~ 221 (227)
T PRK11595 186 QGQHMAIVDDVVTTGSTVAEIAQLLLRNGAASVQVW 221 (227)
T ss_pred CCCEEEEEeeeecchHHHHHHHHHHHHcCCcEEEEE
Confidence 4567999988 79999999999999999888764
No 139
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=59.98 E-value=34 Score=22.29 Aligned_cols=45 Identities=24% Similarity=0.366 Sum_probs=28.8
Q ss_pred hHHHHHHHhh--ccCCCcEEEEeCCCch--HHHHHHHHHHCCccceeecc
Q 032621 66 PDFLKKVRSL--CKEEDRLVVGCQSGAR--SLHATADLLGAGFKHVSNFG 111 (137)
Q Consensus 66 ~~~~~~~~~~--~~~~~~iv~~c~~g~r--a~~~~~~l~~~G~~~v~~l~ 111 (137)
+.|.+.+... +.+++-+|+++.+|.. -..++.+.++.|.. +..+.
T Consensus 89 ~~~~~~~~~~~~~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~-vIalT 137 (138)
T PF13580_consen 89 EGFARQLLALYDIRPGDVLIVISNSGNSPNVIEAAEEAKERGMK-VIALT 137 (138)
T ss_dssp GTHHHHHHHHTT--TT-EEEEEESSS-SHHHHHHHHHHHHTT-E-EEEEE
T ss_pred hHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCE-EEEEe
Confidence 3577777666 7888989999998874 45567778889976 54443
No 140
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=59.92 E-value=24 Score=28.10 Aligned_cols=37 Identities=22% Similarity=0.320 Sum_probs=31.4
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHHCCccceeeccccHH
Q 032621 78 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM 115 (137)
Q Consensus 78 ~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~~ 115 (137)
+++..++||++-..+...+..|...|+. +..+.||+.
T Consensus 225 ~~~~~IIF~~s~~~~e~la~~L~~~g~~-~~~~H~~l~ 261 (470)
T TIGR00614 225 KGKSGIIYCPSRKKSEQVTASLQNLGIA-AGAYHAGLE 261 (470)
T ss_pred CCCceEEEECcHHHHHHHHHHHHhcCCC-eeEeeCCCC
Confidence 5566799999988999999999999986 778888754
No 141
>PRK07481 hypothetical protein; Provisional
Probab=59.54 E-value=16 Score=29.06 Aligned_cols=54 Identities=13% Similarity=0.063 Sum_probs=36.0
Q ss_pred HHHHHHHhhc-cCCCcEEEEeCCCchHHHHHHHHHHC--------CccceeeccccHHHHHhC
Q 032621 67 DFLKKVRSLC-KEEDRLVVGCQSGARSLHATADLLGA--------GFKHVSNFGGGHMAWVQN 120 (137)
Q Consensus 67 ~~~~~~~~~~-~~~~~iv~~c~~g~ra~~~~~~l~~~--------G~~~v~~l~GG~~~w~~~ 120 (137)
++.+++.+.+ +.+-.-+++|++|..|-.+|-.|... |-++|..+.|||.+|...
T Consensus 90 ~lae~L~~~~~~~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~g 152 (449)
T PRK07481 90 ELSYELIDMFAPEGMRRVFFSSGGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFG 152 (449)
T ss_pred HHHHHHHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchh
Confidence 4566665554 23334688899998887777665442 344578889999888653
No 142
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=59.50 E-value=15 Score=26.37 Aligned_cols=31 Identities=26% Similarity=0.191 Sum_probs=27.3
Q ss_pred CcEEEEeC---CCchHHHHHHHHHHCCccceeec
Q 032621 80 DRLVVGCQ---SGARSLHATADLLGAGFKHVSNF 110 (137)
Q Consensus 80 ~~iv~~c~---~g~ra~~~~~~l~~~G~~~v~~l 110 (137)
+.|+++++ +|.....++..|++.|..+|.++
T Consensus 185 ~~vlLvDDV~TTGaTl~~~~~~L~~~Ga~~v~~~ 218 (225)
T COG1040 185 KNVLLVDDVYTTGATLKEAAKLLREAGAKRVFVL 218 (225)
T ss_pred CeEEEEecccccHHHHHHHHHHHHHcCCceEEEE
Confidence 56899988 79999999999999999888765
No 143
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=58.94 E-value=28 Score=20.67 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=13.3
Q ss_pred CCcEEEEeCCCc-hHHHH
Q 032621 79 EDRLVVGCQSGA-RSLHA 95 (137)
Q Consensus 79 ~~~iv~~c~~g~-ra~~~ 95 (137)
..+|++.|..|. |+..+
T Consensus 39 ~~pvlVHC~~G~gRtg~~ 56 (105)
T smart00012 39 SGPVVVHCSAGVGRTGTF 56 (105)
T ss_pred CCCEEEEeCCCCChhhHH
Confidence 579999999876 66544
No 144
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=58.94 E-value=28 Score=20.67 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=13.3
Q ss_pred CCcEEEEeCCCc-hHHHH
Q 032621 79 EDRLVVGCQSGA-RSLHA 95 (137)
Q Consensus 79 ~~~iv~~c~~g~-ra~~~ 95 (137)
..+|++.|..|. |+..+
T Consensus 39 ~~pvlVHC~~G~gRtg~~ 56 (105)
T smart00404 39 SGPVVVHCSAGVGRTGTF 56 (105)
T ss_pred CCCEEEEeCCCCChhhHH
Confidence 579999999876 66544
No 145
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=58.90 E-value=22 Score=29.85 Aligned_cols=48 Identities=21% Similarity=0.228 Sum_probs=37.9
Q ss_pred HHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHHCCccceeeccccHH
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM 115 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~~ 115 (137)
.+...+.....++..++++|.+-.++...+..|.+.|++ +..+.|++.
T Consensus 430 ~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~-~~~lh~~~~ 477 (655)
T TIGR00631 430 DLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIK-VRYLHSEID 477 (655)
T ss_pred HHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccc-eeeeeCCCC
Confidence 455666555567888999999988999999999999985 777776643
No 146
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=58.68 E-value=17 Score=29.21 Aligned_cols=36 Identities=25% Similarity=0.127 Sum_probs=31.1
Q ss_pred CCCcEEEEeC---CCchHHHHHHHHHHCCccceeecccc
Q 032621 78 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSNFGGG 113 (137)
Q Consensus 78 ~~~~iv~~c~---~g~ra~~~~~~l~~~G~~~v~~l~GG 113 (137)
+++.|+++++ +|..+..+++.|++.|.+.|+++-..
T Consensus 347 ~gk~VlLVDDvittGtTl~~~~~~Lk~aGA~eV~v~i~s 385 (471)
T PRK06781 347 EGKRVVMIDDSIVRGTTSKRIVRMLREAGATEVHVRIAS 385 (471)
T ss_pred CCceEEEEeceeccchHHHHHHHHHHHcCCcEEEEEECC
Confidence 4788999998 68899999999999999988877653
No 147
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=58.67 E-value=15 Score=21.69 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=15.7
Q ss_pred cEEEEeCCCch-HHHHH----HHHHHCCcc
Q 032621 81 RLVVGCQSGAR-SLHAT----ADLLGAGFK 105 (137)
Q Consensus 81 ~iv~~c~~g~r-a~~~~----~~l~~~G~~ 105 (137)
.++++|++|.- |.... ..+.+.|+.
T Consensus 1 kilvvC~~G~~tS~ll~~kl~~~f~~~~i~ 30 (86)
T cd05563 1 KILAVCGSGLGSSLMLKMNVEKVLKELGIE 30 (86)
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHHCCCc
Confidence 37999999984 44334 334456654
No 148
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=58.67 E-value=28 Score=27.16 Aligned_cols=36 Identities=19% Similarity=0.213 Sum_probs=31.0
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHHCCccceeeccccH
Q 032621 78 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGH 114 (137)
Q Consensus 78 ~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~ 114 (137)
....+++||++-..+...+..|...|+. +..+.|++
T Consensus 254 ~~~~~lVF~~t~~~~~~l~~~L~~~g~~-v~~lhg~~ 289 (423)
T PRK04837 254 WPDRAIIFANTKHRCEEIWGHLAADGHR-VGLLTGDV 289 (423)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhCCCc-EEEecCCC
Confidence 3567999999988999999999999996 88888875
No 149
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=58.35 E-value=17 Score=29.43 Aligned_cols=35 Identities=17% Similarity=0.076 Sum_probs=30.2
Q ss_pred CCCcEEEEeC---CCchHHHHHHHHHHCCccceeeccc
Q 032621 78 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSNFGG 112 (137)
Q Consensus 78 ~~~~iv~~c~---~g~ra~~~~~~l~~~G~~~v~~l~G 112 (137)
+++.|+|+++ +|.....++..|++.|.++|+++.-
T Consensus 357 ~gK~VlLVDDvitTGaTl~~~~~~L~~aGA~~V~v~v~ 394 (501)
T PRK09246 357 KGKNVLLVDDSIVRGTTSEQIVQMAREAGAKKVYFASA 394 (501)
T ss_pred cCCeEEEEeccccccHHHHHHHHHHHHcCCCEEEEEEE
Confidence 4788999998 6889999999999999998887654
No 150
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=58.16 E-value=40 Score=24.11 Aligned_cols=28 Identities=11% Similarity=0.082 Sum_probs=14.4
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHHCCcc
Q 032621 78 EEDRLVVGCQSGARSLHATADLLGAGFK 105 (137)
Q Consensus 78 ~~~~iv~~c~~g~ra~~~~~~l~~~G~~ 105 (137)
.+.+++++.+++.+....+..|..+|++
T Consensus 39 ~G~~~~ivTN~~~~~~~~~~~L~~~gl~ 66 (242)
T TIGR01459 39 QGKPVYFVSNSPRNIFSLHKTLKSLGIN 66 (242)
T ss_pred CCCEEEEEeCCCCChHHHHHHHHHCCCC
Confidence 3555555555444433344555666654
No 151
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=58.11 E-value=21 Score=28.43 Aligned_cols=53 Identities=13% Similarity=0.080 Sum_probs=35.5
Q ss_pred HHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHH--CCccceeeccccHHHHHh
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLG--AGFKHVSNFGGGHMAWVQ 119 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~--~G~~~v~~l~GG~~~w~~ 119 (137)
++.+.+.+..+.+..-+++|++|..|-.+|-.|.. -|-++|..+.|||.+|..
T Consensus 100 ~lae~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~ 154 (457)
T PRK05639 100 RVAEKLAEISPIENPKVLFGLSGSDAVDMAIKVSKFSTRRPWILAFIGAYHGQTL 154 (457)
T ss_pred HHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHhcCCCeEEEECCCcCCccH
Confidence 45555655533332467889999988887777665 355567778888877654
No 152
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=57.95 E-value=21 Score=27.69 Aligned_cols=29 Identities=31% Similarity=0.529 Sum_probs=24.2
Q ss_pred cCCCcEEEEeCCCchHHHHHHHHHHCCcc
Q 032621 77 KEEDRLVVGCQSGARSLHATADLLGAGFK 105 (137)
Q Consensus 77 ~~~~~iv~~c~~g~ra~~~~~~l~~~G~~ 105 (137)
.+++.|++...+|.-|..++..|++.|++
T Consensus 3 ~~~~kVlValSGGVDSsvaa~LL~~~G~~ 31 (360)
T PRK14665 3 EKNKRVLLGMSGGTDSSVAAMLLLEAGYE 31 (360)
T ss_pred CCCCEEEEEEcCCHHHHHHHHHHHHcCCe
Confidence 56677888888888999999999888886
No 153
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=57.93 E-value=23 Score=26.73 Aligned_cols=39 Identities=8% Similarity=0.038 Sum_probs=32.4
Q ss_pred ccCCCcEEEEeCCCchHHHHHHHHHHCCcc-ceeeccccH
Q 032621 76 CKEEDRLVVGCQSGARSLHATADLLGAGFK-HVSNFGGGH 114 (137)
Q Consensus 76 ~~~~~~iv~~c~~g~ra~~~~~~l~~~G~~-~v~~l~GG~ 114 (137)
...+.+++++|++-..+...+..|.+.+.+ ++..+.|++
T Consensus 219 ~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~ 258 (358)
T TIGR01587 219 IKKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRF 258 (358)
T ss_pred hhCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCC
Confidence 356778999999988899999999988874 688889885
No 154
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=57.63 E-value=37 Score=24.67 Aligned_cols=44 Identities=18% Similarity=0.117 Sum_probs=27.9
Q ss_pred hHHHHHHHhhcc---CCCcEEEEeCCCch-HHHHH----HHHHHCCccceee
Q 032621 66 PDFLKKVRSLCK---EEDRLVVGCQSGAR-SLHAT----ADLLGAGFKHVSN 109 (137)
Q Consensus 66 ~~~~~~~~~~~~---~~~~iv~~c~~g~r-a~~~~----~~l~~~G~~~v~~ 109 (137)
..+.+.+..+++ ++..+|++|.+... |..+. ..|...||++|++
T Consensus 121 e~~v~aik~~~ppl~k~e~~vlmgHGt~h~s~~~YacLd~~~~~~~f~~v~v 172 (265)
T COG4822 121 EICVEAIKDQIPPLNKDEILVLMGHGTDHHSNAAYACLDHVLDEYGFDNVFV 172 (265)
T ss_pred HHHHHHHHHhcCCcCcCeEEEEEecCCCccHHHHHHHHHHHHHhcCCCceEE
Confidence 356667777644 66678999986543 22222 2456789988874
No 155
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=56.74 E-value=44 Score=23.71 Aligned_cols=50 Identities=16% Similarity=0.169 Sum_probs=35.5
Q ss_pred ccCCCcEEEEeC---CCchHHHHHHHHHHCCccce---eecc---ccHHHHHhCCCcee
Q 032621 76 CKEEDRLVVGCQ---SGARSLHATADLLGAGFKHV---SNFG---GGHMAWVQNGLKVK 125 (137)
Q Consensus 76 ~~~~~~iv~~c~---~g~ra~~~~~~l~~~G~~~v---~~l~---GG~~~w~~~~~p~~ 125 (137)
+.++++|+++++ +|.....++..|++.|.+-+ .+++ ||.......|.|+.
T Consensus 115 ~~~g~~VlIVDDViTTG~Ti~~a~~~L~~~G~~vv~v~vlvdr~~~~~~~l~~~gi~v~ 173 (206)
T PRK13809 115 FTPGQTCLVINDMVSSGKSIIETAVALEEEGLVVREALVFLDRQKGACQPLGPQGIKLS 173 (206)
T ss_pred cCCCCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEECcccHHHHHHhcCCCEE
Confidence 357788999998 78899999999999997532 2444 44444444566654
No 156
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=56.57 E-value=50 Score=25.44 Aligned_cols=26 Identities=15% Similarity=0.167 Sum_probs=19.5
Q ss_pred CHHHHHHHhhC-CCEEEecCChHHHhc
Q 032621 16 DVRAAKNLLES-GYGYLDVRTAEEFKE 41 (137)
Q Consensus 16 s~~~~~~~~~~-~~~viDvR~~~e~~~ 41 (137)
...+++..+.+ +..+||+|+..+|..
T Consensus 153 GKT~iL~~L~~~~~~vlDlE~~aehrG 179 (345)
T PRK11784 153 GKTELLQALANAGAQVLDLEGLANHRG 179 (345)
T ss_pred cHHHHHHHHHhcCCeEEECCchhhhcc
Confidence 34566666665 578999999999974
No 157
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=56.29 E-value=24 Score=27.83 Aligned_cols=53 Identities=9% Similarity=0.055 Sum_probs=34.4
Q ss_pred HHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHH-------CCccceeeccccHHHHHh
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLG-------AGFKHVSNFGGGHMAWVQ 119 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~-------~G~~~v~~l~GG~~~w~~ 119 (137)
++.+++.+..+.+-.-+++|++|..|-.+|-.|.. .|-+++..+.|||.++..
T Consensus 90 ~la~~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t~ 149 (428)
T PRK07986 90 ELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDTF 149 (428)
T ss_pred HHHHHHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCcH
Confidence 45556655543333568899999988777666543 234567788888877643
No 158
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=56.23 E-value=33 Score=26.79 Aligned_cols=37 Identities=22% Similarity=0.200 Sum_probs=31.6
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHHCCccceeeccccHH
Q 032621 78 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM 115 (137)
Q Consensus 78 ~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~~ 115 (137)
....+++||++-..+...+..|...|+. +..+.|++.
T Consensus 244 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~l~g~~~ 280 (434)
T PRK11192 244 EVTRSIVFVRTRERVHELAGWLRKAGIN-CCYLEGEMV 280 (434)
T ss_pred CCCeEEEEeCChHHHHHHHHHHHhCCCC-EEEecCCCC
Confidence 4567999999988999999999999986 888898763
No 159
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=56.17 E-value=18 Score=21.50 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=16.3
Q ss_pred cEEEEeCCCchHH-HHH----HHHHHCCcc
Q 032621 81 RLVVGCQSGARSL-HAT----ADLLGAGFK 105 (137)
Q Consensus 81 ~iv~~c~~g~ra~-~~~----~~l~~~G~~ 105 (137)
+|+++|.+|..+. ... ..+.+.++.
T Consensus 2 ~ilivC~~G~~tS~~l~~~i~~~~~~~~i~ 31 (89)
T cd05566 2 KILVACGTGVATSTVVASKVKELLKENGID 31 (89)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHCCCc
Confidence 5899999998543 444 344556664
No 160
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=56.10 E-value=25 Score=27.83 Aligned_cols=54 Identities=17% Similarity=0.247 Sum_probs=36.6
Q ss_pred HHHHHHHhhccCC-CcEEEEeCCCchHHHHHHHHHH--CCccceeeccccHHHHHhC
Q 032621 67 DFLKKVRSLCKEE-DRLVVGCQSGARSLHATADLLG--AGFKHVSNFGGGHMAWVQN 120 (137)
Q Consensus 67 ~~~~~~~~~~~~~-~~iv~~c~~g~ra~~~~~~l~~--~G~~~v~~l~GG~~~w~~~ 120 (137)
++.+.+.+..+.. ..-+++|++|..|-.+|-.|.. -|-+.|..+.|||.+|...
T Consensus 101 ~la~~L~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~ 157 (451)
T PRK06918 101 ELAEKLAALAPGSFDKKVLFLNSGAEAVENAVKIARKYTKRQGIISFSRGFHGRTLM 157 (451)
T ss_pred HHHHHHHHhCCCCCCCEEEEcCCcHHHHHHHHHHHHHHhCCCcEEEECCCcCccchh
Confidence 4556665553322 2468899999988887776654 3656687888888887643
No 161
>PF02863 Arg_repressor_C: Arginine repressor, C-terminal domain; InterPro: IPR020899 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1B4B_B 1B4A_A 3V4G_A 1F9N_F 2P5M_A 1XXA_E 1XXC_C 1XXB_F 3LAJ_D 3BUE_D ....
Probab=56.00 E-value=15 Score=21.19 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=22.2
Q ss_pred ccCCCcEEEEeCCCchHHHHHHHHHH
Q 032621 76 CKEEDRLVVGCQSGARSLHATADLLG 101 (137)
Q Consensus 76 ~~~~~~iv~~c~~g~ra~~~~~~l~~ 101 (137)
+..++.|+++|.++..+......+++
T Consensus 44 IAgdDTilvi~~~~~~a~~l~~~l~~ 69 (70)
T PF02863_consen 44 IAGDDTILVICRSEEDAEELEEKLKE 69 (70)
T ss_dssp EEESSEEEEEESTTSHHHHHHHHHHT
T ss_pred EeCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 45688999999999999998888775
No 162
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=55.93 E-value=12 Score=30.98 Aligned_cols=37 Identities=11% Similarity=0.136 Sum_probs=31.9
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHHCCccceeeccccHH
Q 032621 78 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM 115 (137)
Q Consensus 78 ~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~~ 115 (137)
.+..=+|||.+-..+...+.+|...|+. +..+.||+.
T Consensus 229 ~~~~GIIYc~sRk~~E~ia~~L~~~g~~-a~~YHaGl~ 265 (590)
T COG0514 229 LSKSGIIYCLTRKKVEELAEWLRKNGIS-AGAYHAGLS 265 (590)
T ss_pred cCCCeEEEEeeHHhHHHHHHHHHHCCCc-eEEecCCCC
Confidence 4455799999989999999999999996 888888875
No 163
>PLN02645 phosphoglycolate phosphatase
Probab=55.90 E-value=64 Score=24.17 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=15.2
Q ss_pred eeeCHHHHHHHhhC-CCEEEecCC
Q 032621 13 ITVDVRAAKNLLES-GYGYLDVRT 35 (137)
Q Consensus 13 ~~is~~~~~~~~~~-~~~viDvR~ 35 (137)
...+..++.+++.+ ..+++|+=.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~D~DG 37 (311)
T PLN02645 14 QLLTLENADELIDSVETFIFDCDG 37 (311)
T ss_pred ccCCHHHHHHHHHhCCEEEEeCcC
Confidence 45566777777765 467888754
No 164
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=55.63 E-value=22 Score=27.05 Aligned_cols=32 Identities=19% Similarity=0.080 Sum_probs=27.1
Q ss_pred CCCcEEEEeC---CCchHHHHHHHHHHCCccceee
Q 032621 78 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSN 109 (137)
Q Consensus 78 ~~~~iv~~c~---~g~ra~~~~~~l~~~G~~~v~~ 109 (137)
+++.++|+++ +|..-..+++.|++.|-.+|+.
T Consensus 216 ~Gr~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~ 250 (319)
T PRK04923 216 QGKTCVLVDDLVDTAGTLCAAAAALKQRGALKVVA 250 (319)
T ss_pred CCCEEEEEecccCchHHHHHHHHHHHHCCCCEEEE
Confidence 5677888877 7888999999999999988764
No 165
>PRK05965 hypothetical protein; Provisional
Probab=55.62 E-value=28 Score=27.77 Aligned_cols=52 Identities=12% Similarity=0.078 Sum_probs=34.5
Q ss_pred HHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHH-C----C---ccceeeccccHHHHH
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLG-A----G---FKHVSNFGGGHMAWV 118 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~-~----G---~~~v~~l~GG~~~w~ 118 (137)
++.+.+.+..+.+-.-+++|++|..|-.+|-.+.. + | -++|..+.+||.+|.
T Consensus 94 ~lae~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t 153 (459)
T PRK05965 94 RLAAKLAERAPGSLNHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSS 153 (459)
T ss_pred HHHHHHHhhCCCCcCEEEEeCChhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCccc
Confidence 56666666544344568889999888777665543 2 4 345777888887775
No 166
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=55.51 E-value=81 Score=23.19 Aligned_cols=88 Identities=17% Similarity=0.143 Sum_probs=50.8
Q ss_pred eeCHHHHHHHhhC----C-CEEEecCChHHHhccCCCCceeeCccccccCCCCCCCChHHHHHHHhhccCCCcEEEEeCC
Q 032621 14 TVDVRAAKNLLES----G-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQS 88 (137)
Q Consensus 14 ~is~~~~~~~~~~----~-~~viDvR~~~e~~~g~ipga~~inip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~ 88 (137)
.++.+++.++++. | -.+|.|++.+|.+...--|+..+-|..- +....-.+.+-...+...+++ .+++++.+
T Consensus 134 ~L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINnR--dL~t~~vd~~~~~~L~~~ip~--~~~~IsES 209 (247)
T PRK13957 134 ILTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINTR--DLDTFQIHQNLVEEVAAFLPP--NIVKVGES 209 (247)
T ss_pred hCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeCC--CCccceECHHHHHHHHhhCCC--CcEEEEcC
Confidence 3455566666543 4 5799999999997644445533322211 111111122344455555543 35777889
Q ss_pred CchHHHHHHHHHHCCccc
Q 032621 89 GARSLHATADLLGAGFKH 106 (137)
Q Consensus 89 g~ra~~~~~~l~~~G~~~ 106 (137)
|..+..-...++.. ++-
T Consensus 210 GI~t~~d~~~l~~~-~da 226 (247)
T PRK13957 210 GIESRSDLDKFRKL-VDA 226 (247)
T ss_pred CCCCHHHHHHHHHh-CCE
Confidence 99888877778765 663
No 167
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=55.14 E-value=30 Score=28.03 Aligned_cols=35 Identities=23% Similarity=0.264 Sum_probs=31.1
Q ss_pred CcEEEEeCCCchHHHHHHHHHHCCccceeeccccHH
Q 032621 80 DRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM 115 (137)
Q Consensus 80 ~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~~ 115 (137)
..+|++|++-..+..+++.|...|+. +..+.|++.
T Consensus 274 ~~~IVF~~tk~~~~~l~~~l~~~g~~-~~~lhG~l~ 308 (513)
T COG0513 274 GRVIVFVRTKRLVEELAESLRKRGFK-VAALHGDLP 308 (513)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHCCCe-EEEecCCCC
Confidence 35999999999999999999999996 999999854
No 168
>PRK06105 aminotransferase; Provisional
Probab=54.78 E-value=32 Score=27.40 Aligned_cols=56 Identities=16% Similarity=0.103 Sum_probs=36.3
Q ss_pred HHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHH-----CC---ccceeeccccHHHHHhCCC
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLG-----AG---FKHVSNFGGGHMAWVQNGL 122 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~-----~G---~~~v~~l~GG~~~w~~~~~ 122 (137)
++.+++.+..+.+-.-+++|++|..|-.+|-.+.. .| -.+|..+.+||.+|.....
T Consensus 96 ~lae~L~~~~p~~~~~v~f~~SGseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~ 159 (460)
T PRK06105 96 DLAEKLVAMAPVPMSKVFFTNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASA 159 (460)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhhe
Confidence 45666665543333467889999988777766532 13 3457788899988875443
No 169
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=54.47 E-value=24 Score=27.97 Aligned_cols=52 Identities=19% Similarity=0.137 Sum_probs=36.1
Q ss_pred HHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHH--CCccceeeccccHHHHH
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLG--AGFKHVSNFGGGHMAWV 118 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~--~G~~~v~~l~GG~~~w~ 118 (137)
++.+++.+..+....-+++|++|..|..+|-.|.. .|-+.|..+.|||.+|.
T Consensus 97 ~la~~L~~~~~~~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t 150 (433)
T PRK00615 97 LFAEELFSYLGLEDHKIRFVSSGTEATMTAVRLARGITGRSIIIKFLGCYHGHA 150 (433)
T ss_pred HHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCC
Confidence 45666665543333468888999988887776654 36566778889888876
No 170
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=54.42 E-value=32 Score=30.06 Aligned_cols=46 Identities=17% Similarity=0.091 Sum_probs=36.9
Q ss_pred HHHHhhccCCCcEEEEeCCCchHHHHHHHHHHCCccceeeccccHHH
Q 032621 70 KKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMA 116 (137)
Q Consensus 70 ~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~~~ 116 (137)
+.+......+.|++|.|.+-..|...+..|.+.|++ ..+|.+....
T Consensus 435 ~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~-h~vLnak~~q 480 (896)
T PRK13104 435 EDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIK-HQVLNAKFHE 480 (896)
T ss_pred HHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCC-eEeecCCCCh
Confidence 334333678999999999989999999999999997 6777776554
No 171
>PRK06149 hypothetical protein; Provisional
Probab=54.35 E-value=23 Score=31.13 Aligned_cols=52 Identities=17% Similarity=0.240 Sum_probs=36.9
Q ss_pred HHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHH--CCccceeeccccHHHHH
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLG--AGFKHVSNFGGGHMAWV 118 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~--~G~~~v~~l~GG~~~w~ 118 (137)
++.+++.+..+.+..-+++|++|..|-.+|-.|.. .|-+++..++++|.+|.
T Consensus 628 elae~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t 681 (972)
T PRK06149 628 EFSERLAALAPDGLDTVFLVNSGSEANDLAIRLAWAASGRRDVVSVLEAYHGWT 681 (972)
T ss_pred HHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHhcCCCeEEEEeCCCCCcC
Confidence 45566655544344578889999988887776544 47667888899888776
No 172
>PRK07482 hypothetical protein; Provisional
Probab=54.16 E-value=29 Score=27.64 Aligned_cols=53 Identities=15% Similarity=-0.004 Sum_probs=34.8
Q ss_pred HHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHH-----CCc---cceeeccccHHHHHh
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLG-----AGF---KHVSNFGGGHMAWVQ 119 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~-----~G~---~~v~~l~GG~~~w~~ 119 (137)
++.+.+.+..+.+-.-+++|++|..|-.+|-.+.. .|. ++|..+.|||.+|..
T Consensus 98 ~lAe~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ 158 (461)
T PRK07482 98 TLSKRIIDRAPAGMSKVYYGLSGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGV 158 (461)
T ss_pred HHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccH
Confidence 56666666543334567889999988777766553 243 347778888887753
No 173
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=54.00 E-value=20 Score=27.32 Aligned_cols=32 Identities=9% Similarity=0.062 Sum_probs=27.5
Q ss_pred CCCcEEEEeC---CCchHHHHHHHHHHCCccceee
Q 032621 78 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSN 109 (137)
Q Consensus 78 ~~~~iv~~c~---~g~ra~~~~~~l~~~G~~~v~~ 109 (137)
+++.++++++ +|..-..+++.|++.|..+|+.
T Consensus 217 ~gk~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~ 251 (323)
T PRK02458 217 AGKKAILIDDILNTGKTFAEAAKIVEREGATEIYA 251 (323)
T ss_pred CCCEEEEEcceeCcHHHHHHHHHHHHhCCCCcEEE
Confidence 5678999887 7888999999999999988764
No 174
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=53.78 E-value=17 Score=28.66 Aligned_cols=33 Identities=18% Similarity=0.339 Sum_probs=28.3
Q ss_pred EEEEeCCCchHHHHHHHHHHCCccceeeccccHH
Q 032621 82 LVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM 115 (137)
Q Consensus 82 iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~~ 115 (137)
-+|+|.+-..|...+..|.+.||+ |..|.|-+.
T Consensus 333 siIFc~tk~ta~~l~~~m~~~Gh~-V~~l~G~l~ 365 (477)
T KOG0332|consen 333 SIIFCHTKATAMWLYEEMRAEGHQ-VSLLHGDLT 365 (477)
T ss_pred eEEEEeehhhHHHHHHHHHhcCce-eEEeeccch
Confidence 477888888889999999999997 999998754
No 175
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=53.66 E-value=27 Score=26.60 Aligned_cols=31 Identities=23% Similarity=0.219 Sum_probs=26.6
Q ss_pred CCcEEEEeC---CCchHHHHHHHHHHCCccceee
Q 032621 79 EDRLVVGCQ---SGARSLHATADLLGAGFKHVSN 109 (137)
Q Consensus 79 ~~~iv~~c~---~g~ra~~~~~~l~~~G~~~v~~ 109 (137)
++.++++++ +|..-..++..|++.|-++|+.
T Consensus 214 gk~~iiVDDiIdTgGTi~~Aa~~Lk~~GAk~V~a 247 (314)
T COG0462 214 GKDVVIVDDIIDTGGTIAKAAKALKERGAKKVYA 247 (314)
T ss_pred CCEEEEEeccccccHHHHHHHHHHHHCCCCeEEE
Confidence 567888887 7888899999999999998874
No 176
>PRK06062 hypothetical protein; Provisional
Probab=53.49 E-value=24 Score=28.04 Aligned_cols=53 Identities=9% Similarity=-0.039 Sum_probs=36.1
Q ss_pred HHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHH--CCccceeeccccHHHHHh
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLG--AGFKHVSNFGGGHMAWVQ 119 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~--~G~~~v~~l~GG~~~w~~ 119 (137)
++.+++.+..+.+-.-|++|++|..|-.+|-.|.. .|-++|..+.|||.+|..
T Consensus 99 ~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~ 153 (451)
T PRK06062 99 EAARLIAERAPGDLSKVFFTNGGADANEHAVRMARLHTGRPKVLSAYRSYHGGTG 153 (451)
T ss_pred HHHHHHHHhCCCCCCEEEEcCChHHHHHHHHHHHHHhhCCceEEEEeCCCCCCCH
Confidence 56666666543333457889999988887776654 365667788888877753
No 177
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=53.37 E-value=25 Score=22.32 Aligned_cols=29 Identities=21% Similarity=0.323 Sum_probs=22.0
Q ss_pred cCCCcEEEEeCCCc--hHHHHHHHHHHCCcc
Q 032621 77 KEEDRLVVGCQSGA--RSLHATADLLGAGFK 105 (137)
Q Consensus 77 ~~~~~iv~~c~~g~--ra~~~~~~l~~~G~~ 105 (137)
.+++.+.|+|.+.. .+..++..|.+.|++
T Consensus 7 ~~g~di~iia~G~~~~~al~A~~~L~~~Gi~ 37 (124)
T PF02780_consen 7 REGADITIIAYGSMVEEALEAAEELEEEGIK 37 (124)
T ss_dssp ESSSSEEEEEETTHHHHHHHHHHHHHHTTCE
T ss_pred eCCCCEEEEeehHHHHHHHHHHHHHHHcCCc
Confidence 45677777777654 688889999999975
No 178
>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=53.36 E-value=28 Score=27.83 Aligned_cols=53 Identities=6% Similarity=0.034 Sum_probs=34.4
Q ss_pred HHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHH-----CC---ccceeeccccHHHHHh
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLG-----AG---FKHVSNFGGGHMAWVQ 119 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~-----~G---~~~v~~l~GG~~~w~~ 119 (137)
++.+.+.+..+.+-.-+++|++|..|-.+|-.+.. .| -.+|..+.|+|.+|..
T Consensus 94 ~lae~L~~~~p~~~~~v~f~~sGsEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ 154 (466)
T PRK07030 94 ELSERLVKITPPGLSRCFYADNGSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETL 154 (466)
T ss_pred HHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCcccH
Confidence 45555555433333468889999988777766542 24 3457788888877753
No 179
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=53.32 E-value=32 Score=27.21 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=31.4
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHHCCccceeeccccHH
Q 032621 78 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM 115 (137)
Q Consensus 78 ~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~~ 115 (137)
....++++|++-..+..++..|...|+. +..+.|++.
T Consensus 241 ~~~~~lVF~~t~~~~~~l~~~L~~~~~~-v~~~hg~~~ 277 (460)
T PRK11776 241 QPESCVVFCNTKKECQEVADALNAQGFS-ALALHGDLE 277 (460)
T ss_pred CCCceEEEECCHHHHHHHHHHHHhCCCc-EEEEeCCCC
Confidence 4456899999988999999999999986 888888764
No 180
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=53.21 E-value=23 Score=28.60 Aligned_cols=35 Identities=26% Similarity=0.362 Sum_probs=27.7
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHHCCccceeecccc
Q 032621 78 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGG 113 (137)
Q Consensus 78 ~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG 113 (137)
.+..|+|+. .|.....+|.+|.+.|+.++.+|.|+
T Consensus 20 ~~~kIvIIG-AG~AGLaAA~rLle~gf~~~~IlEa~ 54 (498)
T KOG0685|consen 20 GNAKIVIIG-AGIAGLAAATRLLENGFIDVLILEAS 54 (498)
T ss_pred CCceEEEEC-CchHHHHHHHHHHHhCCceEEEEEec
Confidence 445677774 47777888889999999999999873
No 181
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=53.16 E-value=25 Score=21.72 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=19.1
Q ss_pred CcEEEEeCCCchHHHH-----HHHHHHCCcc
Q 032621 80 DRLVVGCQSGARSLHA-----TADLLGAGFK 105 (137)
Q Consensus 80 ~~iv~~c~~g~ra~~~-----~~~l~~~G~~ 105 (137)
.+|+++|..|.-++.. -..|+++|++
T Consensus 2 ~KIL~aCG~GvgSS~~ik~kve~~l~~~gi~ 32 (93)
T COG3414 2 IKILAACGNGVGSSTMIKMKVEEVLKELGID 32 (93)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHHcCCC
Confidence 4699999999854443 3468889995
No 182
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=52.86 E-value=26 Score=27.76 Aligned_cols=53 Identities=11% Similarity=0.046 Sum_probs=33.7
Q ss_pred HHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHHC--------CccceeeccccHHHHHh
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGA--------GFKHVSNFGGGHMAWVQ 119 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~~--------G~~~v~~l~GG~~~w~~ 119 (137)
++.+++.+..+.+-.-+++|++|..|-.+|-.|... |-.+|..+.|||.+|..
T Consensus 93 ~la~~l~~~~p~~~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ 153 (442)
T PRK13360 93 ELANRIAEIAPGGLNHVFFTNSGSESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVGF 153 (442)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccH
Confidence 455555555333334678899999877776655432 33457778888877753
No 183
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=52.46 E-value=30 Score=27.81 Aligned_cols=50 Identities=16% Similarity=0.146 Sum_probs=35.0
Q ss_pred HHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHH--CCccceeeccccHHHHH
Q 032621 68 FLKKVRSLCKEEDRLVVGCQSGARSLHATADLLG--AGFKHVSNFGGGHMAWV 118 (137)
Q Consensus 68 ~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~--~G~~~v~~l~GG~~~w~ 118 (137)
+.+.+.+.++ .-.-+.+|++|..|..+|-.|.. -|-++|..+.|+|.+|.
T Consensus 144 lAe~l~~~~p-~~~~v~f~~SGsEA~e~AlklAR~~tgr~~Ii~~~g~YHG~~ 195 (474)
T PLN02482 144 LAEMVIDAVP-SVEMVRFVNSGTEACMGVLRLARAYTGREKIIKFEGCYHGHA 195 (474)
T ss_pred HHHHHHHhCC-CCCEEEEeCChHHHHHHHHHHHHHhcCCCEEEEECCccCCCc
Confidence 4444444432 34568899999998888877765 36667888899888875
No 184
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=52.33 E-value=26 Score=27.92 Aligned_cols=53 Identities=13% Similarity=0.086 Sum_probs=35.8
Q ss_pred HHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHH--CCccceeeccccHHHHHh
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLG--AGFKHVSNFGGGHMAWVQ 119 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~--~G~~~v~~l~GG~~~w~~ 119 (137)
++.+++.+..+....-+++|++|..|-.++-.|.. .|-+++..+.++|.+|..
T Consensus 117 ~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~tgr~~ii~~~~~yHG~t~ 171 (459)
T PRK06082 117 ECAEKLTEIAGGELNRVLFAPGGTSAIGMALKLARHITGNFKVVSLWDSFHGASL 171 (459)
T ss_pred HHHHHHHHhCCCCCCEEEECCCcHHHHHHHHHHHHHhcCCCEEEEEeCCCcCccH
Confidence 45556655543333568889999988888777655 365667788888777653
No 185
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=52.26 E-value=23 Score=29.18 Aligned_cols=38 Identities=21% Similarity=0.204 Sum_probs=32.2
Q ss_pred cCCCcEEEEeCCCchHHHHHHHHHHCCccceeeccccHH
Q 032621 77 KEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM 115 (137)
Q Consensus 77 ~~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~~ 115 (137)
.....++|||++-..+..++..|...|+. +..+.|++.
T Consensus 255 ~~~~k~LVF~nt~~~ae~l~~~L~~~g~~-v~~lhg~l~ 292 (572)
T PRK04537 255 SEGARTMVFVNTKAFVERVARTLERHGYR-VGVLSGDVP 292 (572)
T ss_pred ccCCcEEEEeCCHHHHHHHHHHHHHcCCC-EEEEeCCCC
Confidence 34567999999988999999999999996 888888743
No 186
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=52.20 E-value=23 Score=22.33 Aligned_cols=26 Identities=12% Similarity=0.330 Sum_probs=17.8
Q ss_pred CcEEEEeCCCchHHHHHHHH----HHCCcc
Q 032621 80 DRLVVGCQSGARSLHATADL----LGAGFK 105 (137)
Q Consensus 80 ~~iv~~c~~g~ra~~~~~~l----~~~G~~ 105 (137)
+.|+++|+.|..+...+... ...|.+
T Consensus 2 k~IlLvC~aGmSTSlLV~Km~~aA~~kg~~ 31 (102)
T COG1440 2 KKILLVCAAGMSTSLLVTKMKKAAESKGKD 31 (102)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHhCCCc
Confidence 46999999998766665544 345654
No 187
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=52.19 E-value=42 Score=28.29 Aligned_cols=37 Identities=24% Similarity=0.192 Sum_probs=31.9
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHHCCccceeeccccHH
Q 032621 78 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM 115 (137)
Q Consensus 78 ~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~~ 115 (137)
...+++|+|++-..+...+..|.+.|++ +..|.|...
T Consensus 472 ~~~pvLIft~t~~~se~L~~~L~~~gi~-~~~Lhg~~~ 508 (656)
T PRK12898 472 QGRPVLVGTRSVAASERLSALLREAGLP-HQVLNAKQD 508 (656)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCC-EEEeeCCcH
Confidence 4678999999999999999999999997 778888643
No 188
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=52.09 E-value=36 Score=26.99 Aligned_cols=37 Identities=14% Similarity=0.185 Sum_probs=30.8
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHHCCccceeeccccHH
Q 032621 78 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM 115 (137)
Q Consensus 78 ~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~~ 115 (137)
....+++||++-..+..++..|...|+. +..+.|++.
T Consensus 244 ~~~~~lVF~~t~~~~~~l~~~L~~~g~~-~~~lhg~~~ 280 (456)
T PRK10590 244 NWQQVLVFTRTKHGANHLAEQLNKDGIR-SAAIHGNKS 280 (456)
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHCCCC-EEEEECCCC
Confidence 3457999999988899999999999986 778888753
No 189
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=52.02 E-value=95 Score=22.97 Aligned_cols=87 Identities=20% Similarity=0.208 Sum_probs=53.3
Q ss_pred eCHHHHHHHhhC----C-CEEEecCChHHHhccCCCCceeeCccccccCCCCCCCChHHHHHHHhhccCCCcEEEEeCCC
Q 032621 15 VDVRAAKNLLES----G-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSG 89 (137)
Q Consensus 15 is~~~~~~~~~~----~-~~viDvR~~~e~~~g~ipga~~inip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g 89 (137)
++.+++.++++. | -++|.|.+.+|.+...--|+..|-|..-.+ .....+.+-...+...++++ ++++.-+|
T Consensus 140 L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~ga~iIGINnRdL--~tf~vdl~~t~~la~~~p~~--~~~IsESG 215 (254)
T COG0134 140 LDDEQLEELVDRAHELGMEVLVEVHNEEELERALKLGAKIIGINNRDL--TTLEVDLETTEKLAPLIPKD--VILISESG 215 (254)
T ss_pred cCHHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHhCCCCEEEEeCCCc--chheecHHHHHHHHhhCCCC--cEEEecCC
Confidence 444555555432 4 589999999998865556664443222111 01111123344555554444 57777899
Q ss_pred chHHHHHHHHHHCCcc
Q 032621 90 ARSLHATADLLGAGFK 105 (137)
Q Consensus 90 ~ra~~~~~~l~~~G~~ 105 (137)
..+..-...+...|.+
T Consensus 216 I~~~~dv~~l~~~ga~ 231 (254)
T COG0134 216 ISTPEDVRRLAKAGAD 231 (254)
T ss_pred CCCHHHHHHHHHcCCC
Confidence 9999999999999987
No 190
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=52.02 E-value=21 Score=20.76 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=15.7
Q ss_pred cEEEEeCCCch-HHHHHHHHHH
Q 032621 81 RLVVGCQSGAR-SLHATADLLG 101 (137)
Q Consensus 81 ~iv~~c~~g~r-a~~~~~~l~~ 101 (137)
.++++|++|.. +...+..|++
T Consensus 2 kilivC~~G~~~s~~l~~~l~~ 23 (85)
T cd05568 2 KALVVCPSGIGTSRLLKSKLKK 23 (85)
T ss_pred eEEEECCCCHHHHHHHHHHHHH
Confidence 58999999984 5566667766
No 191
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=51.96 E-value=24 Score=28.19 Aligned_cols=53 Identities=21% Similarity=0.179 Sum_probs=33.9
Q ss_pred HHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHHC-----CccceeeccccHHHHHh
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGA-----GFKHVSNFGGGHMAWVQ 119 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~~-----G~~~v~~l~GG~~~w~~ 119 (137)
++.+.+.+..+.+-.-+++|++|..|-.+|-.|... |-.+|..+.|||.+|..
T Consensus 128 ~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t~ 185 (459)
T PRK11522 128 MLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSL 185 (459)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCchHHHHHHHHHHHHHhccCCCcEEEEecCCCCCCcH
Confidence 345555554333345678899999887777666542 33357778888877754
No 192
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=51.85 E-value=44 Score=19.05 Aligned_cols=39 Identities=26% Similarity=0.207 Sum_probs=28.7
Q ss_pred HHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHHCCcccee
Q 032621 68 FLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVS 108 (137)
Q Consensus 68 ~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~ 108 (137)
....+.+. ..+..+.+.++..........+++..||+ +.
T Consensus 16 ~kkal~~l-~~G~~l~V~~d~~~s~~ni~~~~~~~g~~-v~ 54 (69)
T cd03422 16 TLEALPSL-KPGEILEVISDCPQSINNIPIDARNHGYK-VL 54 (69)
T ss_pred HHHHHHcC-CCCCEEEEEecCchHHHHHHHHHHHcCCE-EE
Confidence 34455444 67787777777777788888899999997 54
No 193
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=51.71 E-value=43 Score=22.65 Aligned_cols=47 Identities=21% Similarity=0.170 Sum_probs=30.7
Q ss_pred HHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHHCCccceeecccc
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGG 113 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG 113 (137)
++...+...+.++..++++.............|++.||+-...-..|
T Consensus 121 ~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~ 167 (179)
T TIGR00537 121 RFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVAERG 167 (179)
T ss_pred HHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEEEee
Confidence 34555555566777766665544457888889999999744444444
No 194
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=51.66 E-value=25 Score=26.71 Aligned_cols=32 Identities=19% Similarity=0.189 Sum_probs=27.4
Q ss_pred CCCcEEEEeC---CCchHHHHHHHHHHCCccceee
Q 032621 78 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSN 109 (137)
Q Consensus 78 ~~~~iv~~c~---~g~ra~~~~~~l~~~G~~~v~~ 109 (137)
+++.++++++ +|..-..+++.|++.|-..|+.
T Consensus 216 ~Gr~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~ 250 (320)
T PRK02269 216 KGKKCILIDDMIDTAGTICHAADALAEAGATEVYA 250 (320)
T ss_pred CCCEEEEEeeecCcHHHHHHHHHHHHHCCCCEEEE
Confidence 5678899887 7889999999999999988763
No 195
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases. This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.
Probab=51.58 E-value=31 Score=27.27 Aligned_cols=53 Identities=23% Similarity=0.364 Sum_probs=35.1
Q ss_pred HHHHHHHhhccC---CCcEEEEeCCCchHHHHHHHHHH--CCccceeeccccHHHHHh
Q 032621 67 DFLKKVRSLCKE---EDRLVVGCQSGARSLHATADLLG--AGFKHVSNFGGGHMAWVQ 119 (137)
Q Consensus 67 ~~~~~~~~~~~~---~~~iv~~c~~g~ra~~~~~~l~~--~G~~~v~~l~GG~~~w~~ 119 (137)
++.+.+.+..+. ...++++|++|..|-.+|-.|.. -|-++|..+.|+|.+|..
T Consensus 86 ~lae~L~~~~p~~~~~~~~~f~~~sGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~ 143 (442)
T TIGR00709 86 AFIEALLNIIPKRKMDYKLQFPGPSGADAVEAAIKLAKTYTGRTNVISFSGGFHGMTI 143 (442)
T ss_pred HHHHHHHHhCCCcCCCccEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCchH
Confidence 455556555332 13678888999988877776654 365667788888877653
No 196
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=51.48 E-value=36 Score=29.13 Aligned_cols=38 Identities=16% Similarity=0.126 Sum_probs=33.0
Q ss_pred ccCCCcEEEEeCCCchHHHHHHHHHHCCccceeeccccH
Q 032621 76 CKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGH 114 (137)
Q Consensus 76 ~~~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~ 114 (137)
..++.++++.|.+-..|...+..|.+.|++ ...|.+.-
T Consensus 402 ~~~grpvLV~t~si~~se~ls~~L~~~gi~-~~~Lna~q 439 (745)
T TIGR00963 402 HAKGQPVLVGTTSVEKSELLSNLLKERGIP-HNVLNAKN 439 (745)
T ss_pred HhcCCCEEEEeCcHHHHHHHHHHHHHcCCC-eEEeeCCh
Confidence 568899999999988999999999999997 66777763
No 197
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=51.45 E-value=59 Score=20.39 Aligned_cols=46 Identities=22% Similarity=0.223 Sum_probs=26.1
Q ss_pred HHHHHHHhh---ccCCCcEEEEeCCCchHHHHHHHHHHCCccceeeccc
Q 032621 67 DFLKKVRSL---CKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGG 112 (137)
Q Consensus 67 ~~~~~~~~~---~~~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~G 112 (137)
++.+++.+. ++.++.+++.|+-+.-+............+++.++.|
T Consensus 42 ~~~~~l~~~i~~~~~~~~vlil~Dl~ggsp~n~a~~~~~~~~~~~vi~G 90 (116)
T PF03610_consen 42 DFEEKLEEAIEELDEGDGVLILTDLGGGSPFNEAARLLLDKPNIRVISG 90 (116)
T ss_dssp HHHHHHHHHHHHCCTTSEEEEEESSTTSHHHHHHHHHHCTSTTEEEEES
T ss_pred HHHHHHHHHHHhccCCCcEEEEeeCCCCccchHHHHHhccCCCEEEEec
Confidence 455555444 4678889999984443333333333345555666665
No 198
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=51.19 E-value=21 Score=29.48 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=32.4
Q ss_pred cCCCcEEEEeCCCchHHHHHHHHHHCCccceeeccccHH
Q 032621 77 KEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM 115 (137)
Q Consensus 77 ~~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~~ 115 (137)
.++...+|||++-..+...+..|...|+. +..+.||+.
T Consensus 234 ~~~~~~IIFc~tr~~~e~la~~L~~~g~~-v~~~Ha~l~ 271 (607)
T PRK11057 234 QRGKSGIIYCNSRAKVEDTAARLQSRGIS-AAAYHAGLD 271 (607)
T ss_pred cCCCCEEEEECcHHHHHHHHHHHHhCCCC-EEEecCCCC
Confidence 35677899999988999999999999986 888888864
No 199
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=50.91 E-value=1.2e+02 Score=28.33 Aligned_cols=90 Identities=21% Similarity=0.357 Sum_probs=51.3
Q ss_pred CHHHHHHHhhCC----CEEEecCChHHHhccCCCCceeeCccccccCCCCCCCChHHHHHHHhh-ccCCCcEEEEeCCCc
Q 032621 16 DVRAAKNLLESG----YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVVGCQSGA 90 (137)
Q Consensus 16 s~~~~~~~~~~~----~~viDvR~~~e~~~g~ipga~~inip~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iv~~c~~g~ 90 (137)
.+++..+.+..+ .+||-||..+. ....-|. +..+..+..- .++.+..+++..-|.
T Consensus 1720 qvE~AFRfMasGKHIGKVvikvr~eE~-~k~~~pk-------------------~r~i~AI~rt~~hpeksYii~GGLGG 1779 (2376)
T KOG1202|consen 1720 QVEDAFRFMASGKHIGKVVIKVRAEEP-AKAKGPK-------------------PRLISAIPRTYCHPEKSYIIVGGLGG 1779 (2376)
T ss_pred HHHHHHHHHhccCccceEEEEEccccc-ccccCCc-------------------hhhHhhcchhhcCccceEEEeccccc
Confidence 345566666553 68899998665 3222221 1223333322 466677777776677
Q ss_pred hHHHHHHHHHHCCccceee-----ccccHHH-----HHhCCCcee
Q 032621 91 RSLHATADLLGAGFKHVSN-----FGGGHMA-----WVQNGLKVK 125 (137)
Q Consensus 91 ra~~~~~~l~~~G~~~v~~-----l~GG~~~-----w~~~~~p~~ 125 (137)
.....+.||...|...+.. +.-||++ |...|-.+.
T Consensus 1780 FGLELaqWLi~RGar~lVLtSRsGirtGYQa~~vrrWr~~GVqV~ 1824 (2376)
T KOG1202|consen 1780 FGLELAQWLIQRGARKLVLTSRSGIRTGYQALMVRRWRRRGVQVQ 1824 (2376)
T ss_pred hhHHHHHHHHhcCceEEEEeccccchhhHHHHHHHHHHhcCeEEE
Confidence 7777778887777764432 2225543 766665443
No 200
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=50.75 E-value=35 Score=27.02 Aligned_cols=53 Identities=17% Similarity=0.199 Sum_probs=35.1
Q ss_pred HHHHHHHhhccC-CCcEEEEeCCCchHHHHHHHHHH--CCccceeeccccHHHHHh
Q 032621 67 DFLKKVRSLCKE-EDRLVVGCQSGARSLHATADLLG--AGFKHVSNFGGGHMAWVQ 119 (137)
Q Consensus 67 ~~~~~~~~~~~~-~~~iv~~c~~g~ra~~~~~~l~~--~G~~~v~~l~GG~~~w~~ 119 (137)
++.+.+.+..+. .-.-|++|++|..|-.+|-.+.. .|-++|..+.|||.+|..
T Consensus 101 ~lAe~L~~~~p~~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~ 156 (441)
T PRK05769 101 ELAERLVEIAPGGFEKKVFFTNSGTESNEAAIKIARYHTGRKYIIAFLGAFHGRTY 156 (441)
T ss_pred HHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHHhCCCeEEEECCCcCCccH
Confidence 455555554332 23468899999988777766554 465667788888877653
No 201
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=50.52 E-value=23 Score=28.51 Aligned_cols=35 Identities=26% Similarity=0.148 Sum_probs=30.1
Q ss_pred CCCcEEEEeC---CCchHHHHHHHHHHCCccceeeccc
Q 032621 78 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSNFGG 112 (137)
Q Consensus 78 ~~~~iv~~c~---~g~ra~~~~~~l~~~G~~~v~~l~G 112 (137)
+++.|+++++ +|..+..+++.|++.|...|++.-+
T Consensus 347 ~gk~VlLVDDsittGtTl~~~~~~L~~aGA~eV~v~~~ 384 (475)
T PRK07631 347 EGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVHVRIS 384 (475)
T ss_pred CCceEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEEEe
Confidence 5788999998 5888999999999999998887654
No 202
>PRK06541 hypothetical protein; Provisional
Probab=50.48 E-value=30 Score=27.60 Aligned_cols=54 Identities=13% Similarity=0.102 Sum_probs=34.5
Q ss_pred HHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHHC--------CccceeeccccHHHHHhC
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGA--------GFKHVSNFGGGHMAWVQN 120 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~~--------G~~~v~~l~GG~~~w~~~ 120 (137)
++.+++.+..+.+-.-+++|++|..|-.+|-.|... |-.+|..+.|||.+|...
T Consensus 99 ~la~~l~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~ 160 (460)
T PRK06541 99 ELAERLAALAPGDLNRVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQG 160 (460)
T ss_pred HHHHHHHHhCCCCcCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchh
Confidence 455566555333234578899999887777665432 234577788888877543
No 203
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=50.34 E-value=31 Score=27.39 Aligned_cols=52 Identities=8% Similarity=0.024 Sum_probs=34.7
Q ss_pred HHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHH--CCccceeeccccHHHHH
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLG--AGFKHVSNFGGGHMAWV 118 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~--~G~~~v~~l~GG~~~w~ 118 (137)
++.+.+.+..+....-+++|++|..|-.+|-.+.. -|-+.|..+.|||.+|.
T Consensus 88 ~la~~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t 141 (443)
T PRK08360 88 LLAEKLIEIAPGDNPKVSFGLSGSDANDGAIKFARAYTKRRKILSYLRSYYGST 141 (443)
T ss_pred HHHHHHHHhCCCCCCEEEEcCCHHHHHHHHHHHHHHhcCCCeEEEEeCCcCCcC
Confidence 55666665543332458889999988887776654 36566777788776654
No 204
>PRK07036 hypothetical protein; Provisional
Probab=50.32 E-value=34 Score=27.31 Aligned_cols=52 Identities=15% Similarity=0.205 Sum_probs=34.1
Q ss_pred HHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHH-----CC---ccceeeccccHHHHH
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLG-----AG---FKHVSNFGGGHMAWV 118 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~-----~G---~~~v~~l~GG~~~w~ 118 (137)
++.+.+.+..+.+-.-|++|++|..|-.+|-.|.. .| -++|..+.|+|.+|.
T Consensus 99 ~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t 158 (466)
T PRK07036 99 ELAAKLAELAPGDLNHVFLTTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGST 158 (466)
T ss_pred HHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCcc
Confidence 45556655543334568889999887777666543 13 345777888888775
No 205
>PRK07483 hypothetical protein; Provisional
Probab=50.22 E-value=34 Score=27.13 Aligned_cols=53 Identities=9% Similarity=-0.013 Sum_probs=33.2
Q ss_pred HHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHH-C-------CccceeeccccHHHHHh
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLG-A-------GFKHVSNFGGGHMAWVQ 119 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~-~-------G~~~v~~l~GG~~~w~~ 119 (137)
.+.+.+.+..+.+-.-+++|++|..|-.+|-.|.. . |-.+|..+.++|.+|..
T Consensus 77 ~lae~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ 137 (443)
T PRK07483 77 ALADRLVAAAPAGLEHVYFVSGGSEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTL 137 (443)
T ss_pred HHHHHHHHhCCCCCCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCH
Confidence 45556655533333467889999887776665543 1 33447777888877753
No 206
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=49.98 E-value=1e+02 Score=22.64 Aligned_cols=88 Identities=22% Similarity=0.178 Sum_probs=47.3
Q ss_pred CHHHHHHHhhC----C-CEEEecCChHHHhccCCCCceeeCccccccCCCCCCCChHHHHHHHhhccCCCcEEEEeCCCc
Q 032621 16 DVRAAKNLLES----G-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGA 90 (137)
Q Consensus 16 s~~~~~~~~~~----~-~~viDvR~~~e~~~g~ipga~~inip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~ 90 (137)
+.+++.++++. + ..++|+.+.+|.....--|+..+-+.--.+ ..... +.+...++...++. .+.+++-+|.
T Consensus 145 ~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~gadiIgin~rdl-~~~~~-d~~~~~~l~~~~p~--~~~vIaegGI 220 (260)
T PRK00278 145 DDEQLKELLDYAHSLGLDVLVEVHDEEELERALKLGAPLIGINNRNL-KTFEV-DLETTERLAPLIPS--DRLVVSESGI 220 (260)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEECCCCc-ccccC-CHHHHHHHHHhCCC--CCEEEEEeCC
Confidence 34455555432 4 579999998877543323443332211000 01111 12334444443322 3466777888
Q ss_pred hHHHHHHHHHHCCccce
Q 032621 91 RSLHATADLLGAGFKHV 107 (137)
Q Consensus 91 ra~~~~~~l~~~G~~~v 107 (137)
.+..-+..+...|++-|
T Consensus 221 ~t~ed~~~~~~~Gad~v 237 (260)
T PRK00278 221 FTPEDLKRLAKAGADAV 237 (260)
T ss_pred CCHHHHHHHHHcCCCEE
Confidence 88888888888999744
No 207
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=49.72 E-value=75 Score=23.73 Aligned_cols=14 Identities=14% Similarity=0.207 Sum_probs=8.1
Q ss_pred ccCCCcEEEEeCCC
Q 032621 76 CKEEDRLVVGCQSG 89 (137)
Q Consensus 76 ~~~~~~iv~~c~~g 89 (137)
+..++.|+.+|++|
T Consensus 107 I~~g~~ILTh~~S~ 120 (275)
T PRK08335 107 IDDGDVIITHSFSS 120 (275)
T ss_pred cCCCCEEEEECCcH
Confidence 44555666666654
No 208
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=49.60 E-value=44 Score=28.85 Aligned_cols=38 Identities=16% Similarity=0.097 Sum_probs=32.9
Q ss_pred cCCCcEEEEeCCCchHHHHHHHHHHCCccceeeccccHH
Q 032621 77 KEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM 115 (137)
Q Consensus 77 ~~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~~ 115 (137)
....+++|+|++-..+...+..|.+.|++ +..|.|...
T Consensus 426 ~~~~pvLIf~~t~~~se~l~~~L~~~gi~-~~~L~~~~~ 463 (790)
T PRK09200 426 ETGRPVLIGTGSIEQSETFSKLLDEAGIP-HNLLNAKNA 463 (790)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHCCCC-EEEecCCcc
Confidence 46789999999988999999999999996 778888643
No 209
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=49.47 E-value=34 Score=27.13 Aligned_cols=53 Identities=15% Similarity=0.128 Sum_probs=35.6
Q ss_pred HHHHHHHhhccCC-CcEEEEeCCCchHHHHHHHHHH--CCccceeeccccHHHHHh
Q 032621 67 DFLKKVRSLCKEE-DRLVVGCQSGARSLHATADLLG--AGFKHVSNFGGGHMAWVQ 119 (137)
Q Consensus 67 ~~~~~~~~~~~~~-~~iv~~c~~g~ra~~~~~~l~~--~G~~~v~~l~GG~~~w~~ 119 (137)
++.+.+.+..+.. ..-|++|++|..|-.+|-.|.. .|-++|..++|+|.+|..
T Consensus 89 ~lae~L~~~~p~~~~~~v~f~~SGseA~e~AiklAr~~tgr~~ii~~~~~YHG~t~ 144 (445)
T PRK08593 89 RLAKKLCELAPGDFEKRVTFGLSGSDANDGIIKFARAYTGRPYIISFTNAYHGSTY 144 (445)
T ss_pred HHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCcH
Confidence 4566666553322 2468888999988877776654 365667888888887753
No 210
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=49.42 E-value=48 Score=28.67 Aligned_cols=39 Identities=15% Similarity=0.083 Sum_probs=33.8
Q ss_pred ccCCCcEEEEeCCCchHHHHHHHHHHCCccceeeccccHH
Q 032621 76 CKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM 115 (137)
Q Consensus 76 ~~~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~~ 115 (137)
...+.++++.|.+-..|...+..|.+.|++ ..+|.+...
T Consensus 437 ~~~g~pvLI~t~si~~se~ls~~L~~~gi~-~~~Lna~~~ 475 (796)
T PRK12906 437 HAKGQPVLVGTVAIESSERLSHLLDEAGIP-HAVLNAKNH 475 (796)
T ss_pred HhCCCCEEEEeCcHHHHHHHHHHHHHCCCC-eeEecCCcH
Confidence 457899999999999999999999999997 678887654
No 211
>PRK07678 aminotransferase; Validated
Probab=49.32 E-value=31 Score=27.43 Aligned_cols=52 Identities=6% Similarity=-0.056 Sum_probs=33.8
Q ss_pred HHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHHC--------CccceeeccccHHHHHh
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGA--------GFKHVSNFGGGHMAWVQ 119 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~~--------G~~~v~~l~GG~~~w~~ 119 (137)
++.+.+.+..+. ..-+++|++|..|-.+|-.|... |-++|..+.|||.+|..
T Consensus 93 ~lae~l~~~~~~-~~~v~f~~sGseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~ 152 (451)
T PRK07678 93 KLAEKLNEWLGG-EYVIFFSNSGSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSM 152 (451)
T ss_pred HHHHHHHHhCCC-CCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccH
Confidence 455666555333 34688899999877776655432 33457778888887754
No 212
>PRK08297 L-lysine aminotransferase; Provisional
Probab=49.28 E-value=32 Score=27.25 Aligned_cols=54 Identities=13% Similarity=0.132 Sum_probs=34.5
Q ss_pred HHHHHHHhhc-cCCCcEEEEeCCCchHHHHHHHHHH---------CCc-----cceeeccccHHHHHhC
Q 032621 67 DFLKKVRSLC-KEEDRLVVGCQSGARSLHATADLLG---------AGF-----KHVSNFGGGHMAWVQN 120 (137)
Q Consensus 67 ~~~~~~~~~~-~~~~~iv~~c~~g~ra~~~~~~l~~---------~G~-----~~v~~l~GG~~~w~~~ 120 (137)
++.+.+.+.. +++-.-|++|++|..|-.+|-.|.. .|. ++|..+.|||.+|...
T Consensus 96 ~la~~l~~~~~p~~~~~v~f~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~ 164 (443)
T PRK08297 96 RFVDTFARVLGDPELPHLFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGY 164 (443)
T ss_pred HHHHHHHhhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchh
Confidence 3444444432 3444578899999988777766653 354 4577888888777543
No 213
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=49.25 E-value=29 Score=28.24 Aligned_cols=35 Identities=20% Similarity=0.159 Sum_probs=29.9
Q ss_pred CCCcEEEEeC---CCchHHHHHHHHHHCCccceeeccc
Q 032621 78 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSNFGG 112 (137)
Q Consensus 78 ~~~~iv~~c~---~g~ra~~~~~~l~~~G~~~v~~l~G 112 (137)
++++|+|+++ +|.....+++.|++.|.+.|++.-+
T Consensus 376 ~gkrVlLVDDvIttGtTl~~~~~~Lr~aGAkeV~~~i~ 413 (500)
T PRK07349 376 AGKRIIIVDDSIVRGTTSRKIVKALRDAGATEVHMRIS 413 (500)
T ss_pred CCCEEEEEeceeCCcHHHHHHHHHHHHhCCeEEEEEeC
Confidence 5788999998 6889999999999999987766544
No 214
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=49.21 E-value=38 Score=27.19 Aligned_cols=58 Identities=21% Similarity=0.260 Sum_probs=42.3
Q ss_pred HHHHHHHhhccC-CCcEEEEeCCCchHHHHHHHHHH--CCccceeeccccHHHHHhCCCce
Q 032621 67 DFLKKVRSLCKE-EDRLVVGCQSGARSLHATADLLG--AGFKHVSNFGGGHMAWVQNGLKV 124 (137)
Q Consensus 67 ~~~~~~~~~~~~-~~~iv~~c~~g~ra~~~~~~l~~--~G~~~v~~l~GG~~~w~~~~~p~ 124 (137)
++.+++.+..+. ....+++.++|..|-.+|-.+.. -|-..|..+.|+|.+.+...+.+
T Consensus 103 ~~ae~L~~~~p~~~~~~~~f~~sGaeA~E~AiKiAr~~Tgr~~viaf~~afHG~T~galsl 163 (447)
T COG0160 103 ELAEKLTALAPGSGLKKVFFGNSGAEAVEAAIKIARAYTGRPGVIAFDGAFHGRTLGALSL 163 (447)
T ss_pred HHHHHHHHhCCcccCCeEEecCCcHHHHHHHHHHHHHHhCCCcEEEECCcccccchhhHHh
Confidence 577777777444 56778888899988888777665 46677888999888776554433
No 215
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=49.17 E-value=26 Score=28.02 Aligned_cols=35 Identities=20% Similarity=0.115 Sum_probs=29.5
Q ss_pred CCCcEEEEeC---CCchHHHHHHHHHHCCccceeeccc
Q 032621 78 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSNFGG 112 (137)
Q Consensus 78 ~~~~iv~~c~---~g~ra~~~~~~l~~~G~~~v~~l~G 112 (137)
+++.|+++++ +|.....+++.|++.|.+.|.+.-.
T Consensus 333 ~gk~VlLVDD~IttGtTl~~~~~~L~~aGAk~V~~~~~ 370 (442)
T PRK08341 333 NGKRVVLVDDSIVRGTTMKRIVKMLRDAGAREVHVRIA 370 (442)
T ss_pred CCCEEEEEeeeeccHHHHHHHHHHHHhcCCcEEEEEEc
Confidence 5788999998 6889999999999999987776543
No 216
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=49.05 E-value=32 Score=21.23 Aligned_cols=18 Identities=17% Similarity=-0.018 Sum_probs=7.2
Q ss_pred EEeCCCchHHHHHHHHHH
Q 032621 84 VGCQSGARSLHATADLLG 101 (137)
Q Consensus 84 ~~c~~g~ra~~~~~~l~~ 101 (137)
++|..|..+...+..|.+
T Consensus 2 vI~G~g~~~~~i~~~L~~ 19 (116)
T PF02254_consen 2 VIIGYGRIGREIAEQLKE 19 (116)
T ss_dssp EEES-SHHHHHHHHHHHH
T ss_pred EEEcCCHHHHHHHHHHHh
Confidence 334444444444444444
No 217
>PF04722 Ssu72: Ssu72-like protein; InterPro: IPR006811 The highly conserved and essential protein Ssu72 has intrinsic phosphatase activity and plays an essential role in the transcription cycle. Ssu72 was originally identified in a yeast genetic screen as enhancer of a defect caused by a mutation in the transcription initiation factor TFIIB []. It binds to TFIIB and is also involved in mRNA elongation. Ssu72 is further involved in both poly(A) dependent and independent termination. It is a subunit of the yeast cleavage and polyadenylation factor (CPF), which is part of the machinery for mRNA 3'-end formation. Ssu72 is also essential for transcription termination of snRNAs [].; GO: 0004721 phosphoprotein phosphatase activity, 0006397 mRNA processing, 0005634 nucleus; PDB: 3O2S_B 3O2Q_E 3FMV_H 3OMW_D 3P9Y_B 3FDF_A 3OMX_A.
Probab=48.93 E-value=35 Score=24.14 Aligned_cols=29 Identities=45% Similarity=0.670 Sum_probs=22.8
Q ss_pred cEEEEeCCCc-hHHHHHHHHHHCCccceeec
Q 032621 81 RLVVGCQSGA-RSLHATADLLGAGFKHVSNF 110 (137)
Q Consensus 81 ~iv~~c~~g~-ra~~~~~~l~~~G~~~v~~l 110 (137)
.+-++|.+.. ||-.+=..|++.||+ |.-+
T Consensus 3 ~~avVCasN~NRSMEAH~~L~~~G~~-V~Sf 32 (195)
T PF04722_consen 3 RFAVVCASNQNRSMEAHNVLKKAGFN-VRSF 32 (195)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHTT-E-EEEE
T ss_pred eEEEEccCCCCcCHHHHHHHHHCCCc-eEee
Confidence 4678999876 999999999999995 5543
No 218
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=48.87 E-value=39 Score=26.45 Aligned_cols=52 Identities=17% Similarity=0.234 Sum_probs=34.6
Q ss_pred HHHHHHHhhcc-CCCcEEEEeCCCchHHHHHHHHHH--CCccceeeccccHHHHH
Q 032621 67 DFLKKVRSLCK-EEDRLVVGCQSGARSLHATADLLG--AGFKHVSNFGGGHMAWV 118 (137)
Q Consensus 67 ~~~~~~~~~~~-~~~~iv~~c~~g~ra~~~~~~l~~--~G~~~v~~l~GG~~~w~ 118 (137)
++.+.+.+..+ .+..-+++|++|..|-.+|-.|.. .|-+.|..+.|||.+|.
T Consensus 80 ~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 134 (420)
T TIGR00700 80 ALAEKLNRIAPGSGPKKSVFFNSGAEAVENAVKIARSYTGRPGVVAFDHGFHGRT 134 (420)
T ss_pred HHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHhcCCCcEEEECCCcCCCc
Confidence 45666655532 222458888899988887777655 36566777888877654
No 219
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=48.82 E-value=30 Score=26.08 Aligned_cols=44 Identities=23% Similarity=0.100 Sum_probs=32.6
Q ss_pred CCCcEEEEeC---CCchHHHHHHHHHHCCccceeecc-------ccHHHHHhCC
Q 032621 78 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSNFG-------GGHMAWVQNG 121 (137)
Q Consensus 78 ~~~~iv~~c~---~g~ra~~~~~~l~~~G~~~v~~l~-------GG~~~w~~~~ 121 (137)
+++.++++++ +|..-..+++.|++.|..+|+.+. +++....+.+
T Consensus 200 ~gr~viIVDDIi~TG~Tl~~aa~~Lk~~Ga~~I~~~~tH~v~~~~a~~~l~~~~ 253 (304)
T PRK03092 200 EGRTCVLVDDMIDTGGTIAGAVRALKEAGAKDVIIAATHGVLSGPAAERLKNCG 253 (304)
T ss_pred CCCEEEEEccccCcHHHHHHHHHHHHhcCCCeEEEEEEcccCChHHHHHHHHCC
Confidence 4667888887 788889999999999998876443 2345565544
No 220
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=48.79 E-value=17 Score=23.28 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=15.3
Q ss_pred CHHHHHHHhhCC--CEEEecCChH
Q 032621 16 DVRAAKNLLESG--YGYLDVRTAE 37 (137)
Q Consensus 16 s~~~~~~~~~~~--~~viDvR~~~ 37 (137)
+.+++.+.+... -+|||||...
T Consensus 1 ~~e~f~~~l~~~~i~~lVDVR~~P 24 (122)
T PF04343_consen 1 SIERFYDLLKKNGIRVLVDVRLWP 24 (122)
T ss_pred CHHHHHHHHHHCCCeEEEEECCCC
Confidence 356777777653 5899999543
No 221
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=48.62 E-value=31 Score=26.40 Aligned_cols=33 Identities=15% Similarity=0.129 Sum_probs=27.5
Q ss_pred CCCcEEEEeC---CCchHHHHHHHHHHCCccceeec
Q 032621 78 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSNF 110 (137)
Q Consensus 78 ~~~~iv~~c~---~g~ra~~~~~~l~~~G~~~v~~l 110 (137)
+++.++++++ +|.....++..|++.|-..|+.+
T Consensus 217 ~Gk~VIIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~ 252 (332)
T PRK00553 217 KNKNCLIVDDMIDTGGTVIAAAKLLKKQKAKKVCVM 252 (332)
T ss_pred CCCEEEEEeccccchHHHHHHHHHHHHcCCcEEEEE
Confidence 4677889887 78899999999999999887643
No 222
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=48.59 E-value=28 Score=27.78 Aligned_cols=34 Identities=29% Similarity=0.192 Sum_probs=29.0
Q ss_pred CCCcEEEEeC---CCchHHHHHHHHHHCCccceeecc
Q 032621 78 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSNFG 111 (137)
Q Consensus 78 ~~~~iv~~c~---~g~ra~~~~~~l~~~G~~~v~~l~ 111 (137)
+++.|+|+++ +|.....++..|++.|.+.|+++.
T Consensus 339 ~gK~VlLVDDvitTG~Tl~~a~~~Lr~aGA~~V~v~~ 375 (445)
T PRK08525 339 EGKRIVVIDDSIVRGTTSKKIVSLLRAAGAKEIHLRI 375 (445)
T ss_pred CCCeEEEEecccCcHHHHHHHHHHHHhcCCCEEEEEE
Confidence 4788999998 688889999999999998887654
No 223
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=48.57 E-value=35 Score=27.05 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=31.7
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHHCCccceeeccccHH
Q 032621 78 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM 115 (137)
Q Consensus 78 ~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~~ 115 (137)
.+..++++|++...+...+-.|...|+. ..-|.|-+.
T Consensus 299 ~g~s~iVF~~t~~tt~~la~~L~~lg~~-a~~LhGqms 335 (476)
T KOG0330|consen 299 AGNSVIVFCNTCNTTRFLALLLRNLGFQ-AIPLHGQMS 335 (476)
T ss_pred cCCcEEEEEeccchHHHHHHHHHhcCcc-eecccchhh
Confidence 5688999999999999999999999996 667777544
No 224
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=48.52 E-value=20 Score=24.50 Aligned_cols=23 Identities=26% Similarity=0.301 Sum_probs=17.4
Q ss_pred ccCCCcEEEEeCCCc-hHHHHHHH
Q 032621 76 CKEEDRLVVGCQSGA-RSLHATAD 98 (137)
Q Consensus 76 ~~~~~~iv~~c~~g~-ra~~~~~~ 98 (137)
.+..+++++.|--|. ||..++..
T Consensus 90 wp~~apllIHC~aGISRStA~A~i 113 (172)
T COG5350 90 WPRFAPLLIHCYAGISRSTAAALI 113 (172)
T ss_pred CccccceeeeeccccccchHHHHH
Confidence 367789999999887 66655544
No 225
>PRK06450 threonine synthase; Validated
Probab=48.21 E-value=56 Score=25.00 Aligned_cols=56 Identities=18% Similarity=0.173 Sum_probs=32.9
Q ss_pred eCccccccCCCCCCCChHHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHHCCcc
Q 032621 50 FNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFK 105 (137)
Q Consensus 50 inip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~~G~~ 105 (137)
+.+..+.++|.+.+.+.-....+......+...|+.+.+|+.+..++.+.+..|++
T Consensus 67 l~~K~E~~nPTGSfKDRga~~~i~~a~~~g~~~vv~aSsGN~g~slA~~aa~~G~~ 122 (338)
T PRK06450 67 IWFKLDFLNPTGSYKDRGSVTLISYLAEKGIKQISEDSSGNAGASIAAYGAAAGIE 122 (338)
T ss_pred EEEEecCCCCcCCCHHHHHHHHHHHHHHcCCCEEEEECCcHHHHHHHHHHHHcCCC
Confidence 33444455666665432222222222223445666677788888888888888886
No 226
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=48.19 E-value=41 Score=26.59 Aligned_cols=48 Identities=21% Similarity=0.205 Sum_probs=31.2
Q ss_pred HHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHH-CCc--c--ceeeccccHH
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLG-AGF--K--HVSNFGGGHM 115 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~-~G~--~--~v~~l~GG~~ 115 (137)
++.+++.+..+ ...-|++|++|..|-.+|-.|.. .+. + ++....+++.
T Consensus 88 ~la~~L~~~s~-~~d~vff~NSGaEA~EaAiKlARk~~~~~~k~~Iia~~nsFH 140 (404)
T COG4992 88 ELAEKLVELSP-FADRVFFCNSGAEANEAALKLARKYTGDPEKSKIIAFENSFH 140 (404)
T ss_pred HHHHHHHhhCc-cccEEEEcCCcHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcC
Confidence 55666655533 56679999999999888876654 443 2 3555555554
No 227
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=48.01 E-value=29 Score=27.87 Aligned_cols=35 Identities=29% Similarity=0.150 Sum_probs=29.4
Q ss_pred CCCcEEEEeC---CCchHHHHHHHHHHCCccceeeccc
Q 032621 78 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSNFGG 112 (137)
Q Consensus 78 ~~~~iv~~c~---~g~ra~~~~~~l~~~G~~~v~~l~G 112 (137)
+++.|+++++ +|.....++..|++.|-+.|++...
T Consensus 352 ~gk~VlLVDD~ItTGtTl~~~~~~Lr~aGAk~V~~~~~ 389 (469)
T PRK05793 352 EGKRVVLIDDSIVRGTTSKRLVELLRKAGAKEVHFRVS 389 (469)
T ss_pred CCCEEEEEccccCchHHHHHHHHHHHHcCCCEEEEEEE
Confidence 5688999998 5888889999999999988876654
No 228
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=47.86 E-value=31 Score=25.67 Aligned_cols=32 Identities=19% Similarity=0.139 Sum_probs=27.0
Q ss_pred CCCcEEEEeC---CCchHHHHHHHHHHCCccceee
Q 032621 78 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSN 109 (137)
Q Consensus 78 ~~~~iv~~c~---~g~ra~~~~~~l~~~G~~~v~~ 109 (137)
+++.++++++ +|.....+++.|++.|-.+|+.
T Consensus 203 ~Gk~VlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~ 237 (285)
T PRK00934 203 KGKDVLIVDDIISTGGTMATAIKILKEQGAKKVYV 237 (285)
T ss_pred CCCEEEEEcCccccHHHHHHHHHHHHHCCCCEEEE
Confidence 5778999887 7888999999999999887664
No 229
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=47.59 E-value=26 Score=22.22 Aligned_cols=29 Identities=17% Similarity=0.174 Sum_probs=22.2
Q ss_pred EEEeCCCchHHHHHHHHHHCCccceeecc
Q 032621 83 VVGCQSGARSLHATADLLGAGFKHVSNFG 111 (137)
Q Consensus 83 v~~c~~g~ra~~~~~~l~~~G~~~v~~l~ 111 (137)
|++.++|.-+.++.+.++++|++-|.+..
T Consensus 5 vLIanrGeia~r~~ra~r~~Gi~tv~v~s 33 (110)
T PF00289_consen 5 VLIANRGEIAVRIIRALRELGIETVAVNS 33 (110)
T ss_dssp EEESS-HHHHHHHHHHHHHTTSEEEEEEE
T ss_pred EEEECCCHHHHHHHHHHHHhCCcceeccC
Confidence 56667888899999999999998555443
No 230
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=47.54 E-value=59 Score=21.83 Aligned_cols=38 Identities=18% Similarity=0.149 Sum_probs=28.3
Q ss_pred cCCCcEEEEeCC-C-c--hHHHHHHHHHHCCccceeeccccH
Q 032621 77 KEEDRLVVGCQS-G-A--RSLHATADLLGAGFKHVSNFGGGH 114 (137)
Q Consensus 77 ~~~~~iv~~c~~-g-~--ra~~~~~~l~~~G~~~v~~l~GG~ 114 (137)
..+..+|.+|.. | . -.+.....|++.|.+++.++.||.
T Consensus 61 ~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~v~~GGv 102 (143)
T COG2185 61 EEDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDILVVVGGV 102 (143)
T ss_pred hcCCCEEEEEeccchHHHHHHHHHHHHHHhCCcceEEeecCc
Confidence 456667777763 3 2 367778889999999999888874
No 231
>PRK05638 threonine synthase; Validated
Probab=47.10 E-value=56 Score=25.90 Aligned_cols=56 Identities=14% Similarity=0.010 Sum_probs=35.0
Q ss_pred eCccccccCCCCCCCChHHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHHCCcc
Q 032621 50 FNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFK 105 (137)
Q Consensus 50 inip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~~G~~ 105 (137)
+.+-.+.++|.+.+.+.-....+......+...|+...+|..+..+|...+..|++
T Consensus 82 l~~K~E~~nPtGSfKdR~a~~~i~~a~~~g~~~vv~aSsGN~g~alA~~aa~~G~~ 137 (442)
T PRK05638 82 VYIKDETRNPTGSFRDRLATVAVSYGLPYAANGFIVASDGNAAASVAAYSARAGKE 137 (442)
T ss_pred EEEEeCCCCCCCChHHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHcCCC
Confidence 56666666777665443222233322233445556677888888888888889986
No 232
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=47.01 E-value=36 Score=23.05 Aligned_cols=31 Identities=16% Similarity=0.146 Sum_probs=26.2
Q ss_pred cCCCcEEEEeC---CCchHHHHHHHHHHCCccce
Q 032621 77 KEEDRLVVGCQ---SGARSLHATADLLGAGFKHV 107 (137)
Q Consensus 77 ~~~~~iv~~c~---~g~ra~~~~~~l~~~G~~~v 107 (137)
.+++.|+++++ +|.....+...|++.|.+.+
T Consensus 107 ~~gk~VLIVDDIitTG~Tl~~a~~~L~~~Ga~~v 140 (169)
T TIGR01090 107 KPGQRVLIVDDLLATGGTAEATDELIRKLGGEVV 140 (169)
T ss_pred CCcCEEEEEeccccchHHHHHHHHHHHHcCCEEE
Confidence 47788999988 78889999999999998644
No 233
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=46.98 E-value=39 Score=21.95 Aligned_cols=37 Identities=19% Similarity=0.197 Sum_probs=27.1
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHHCCccceeeccccHH
Q 032621 78 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM 115 (137)
Q Consensus 78 ~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~~ 115 (137)
.+++++++. .|.-+..++..|...|.++++++.--..
T Consensus 11 ~~~~vlviG-aGg~ar~v~~~L~~~g~~~i~i~nRt~~ 47 (135)
T PF01488_consen 11 KGKRVLVIG-AGGAARAVAAALAALGAKEITIVNRTPE 47 (135)
T ss_dssp TTSEEEEES-SSHHHHHHHHHHHHTTSSEEEEEESSHH
T ss_pred CCCEEEEEC-CHHHHHHHHHHHHHcCCCEEEEEECCHH
Confidence 456666664 4777788888888899988888766544
No 234
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=46.84 E-value=32 Score=20.65 Aligned_cols=35 Identities=17% Similarity=0.131 Sum_probs=23.8
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHHCCccceeeccccHH
Q 032621 78 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM 115 (137)
Q Consensus 78 ~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~~ 115 (137)
.+.||+++. ..-.......|+..+.++++++ ||..
T Consensus 49 ~~~PIll~~--~~l~~~~~~~l~~~~~~~v~ii-Gg~~ 83 (92)
T PF04122_consen 49 NNAPILLVN--NSLPSSVKAFLKSLNIKKVYII-GGEG 83 (92)
T ss_pred cCCeEEEEC--CCCCHHHHHHHHHcCCCEEEEE-CCCC
Confidence 455666655 4444777788888888888877 6543
No 235
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=46.82 E-value=22 Score=23.69 Aligned_cols=47 Identities=21% Similarity=0.357 Sum_probs=24.1
Q ss_pred CCCCceeeCccccccCCCCCCCChHHHHHHHhhccCCCcEEEEeCCCc
Q 032621 43 HVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGA 90 (137)
Q Consensus 43 ~ipga~~inip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~ 90 (137)
..+|..+..||.........-.-+.|...+..+ +++.-++|.|..|.
T Consensus 89 ~~~g~~Y~Ripitd~~~P~~~~iD~fi~~v~~~-p~~~~l~fhC~~G~ 135 (149)
T PF14566_consen 89 EGNGLRYYRIPITDHQAPDPEDIDAFINFVKSL-PKDTWLHFHCQAGR 135 (149)
T ss_dssp HHTT-EEEEEEE-TTS---HHHHHHHHHHHHTS--TT-EEEEE-SSSS
T ss_pred hcCCceEEEEeCCCcCCCCHHHHHHHHHHHHhC-CCCCeEEEECCCCC
Confidence 345666777777532111110112566666665 77888999999887
No 236
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=46.70 E-value=51 Score=28.91 Aligned_cols=47 Identities=11% Similarity=0.089 Sum_probs=37.2
Q ss_pred HHHHHhhccCCCcEEEEeCCCchHHHHHHHHHHCCccceeeccccHHH
Q 032621 69 LKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMA 116 (137)
Q Consensus 69 ~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~~~ 116 (137)
.+.+......+.+|++.|.+-..|...+..|...|+. ..+|.+....
T Consensus 439 i~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~-~~vLnak~~~ 485 (908)
T PRK13107 439 IKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIP-HEVLNAKFHE 485 (908)
T ss_pred HHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCC-eEeccCcccH
Confidence 3344444678999999999999999999999999997 6678776543
No 237
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=46.63 E-value=31 Score=19.82 Aligned_cols=29 Identities=17% Similarity=0.406 Sum_probs=23.4
Q ss_pred ceeeeCHHHHHHHhhCC--CEEEecCChHHH
Q 032621 11 EVITVDVRAAKNLLESG--YGYLDVRTAEEF 39 (137)
Q Consensus 11 ~~~~is~~~~~~~~~~~--~~viDvR~~~e~ 39 (137)
....|+.+++.+++..+ +.|+|..+-++-
T Consensus 16 ~s~YiTL~di~~lV~~g~~~~V~D~ktgeDi 46 (64)
T PF07879_consen 16 TSSYITLEDIAQLVREGEDFKVVDAKTGEDI 46 (64)
T ss_pred CceeEeHHHHHHHHHCCCeEEEEECCCCccc
Confidence 34689999999999886 889999975443
No 238
>PRK06381 threonine synthase; Validated
Probab=46.62 E-value=72 Score=23.90 Aligned_cols=64 Identities=14% Similarity=-0.006 Sum_probs=40.1
Q ss_pred eCccccccCCCCCCCChHHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHHCCccceeecccc
Q 032621 50 FNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGG 113 (137)
Q Consensus 50 inip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG 113 (137)
+.+..+.++|.+..........+......+...|+.+.+|..+..++...+.+|++=+.++...
T Consensus 33 i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~lv~aSsGN~g~alA~~aa~~G~~~~ivvp~~ 96 (319)
T PRK06381 33 IYLKFEGANPTGTQKDRIAEAHVRRAMRLGYSGITVGTCGNYGASIAYFARLYGLKAVIFIPRS 96 (319)
T ss_pred EEEEecCCCCccCcHHHHHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCC
Confidence 6666666677666544333333333333445556667789888888999999999733344443
No 239
>PRK08329 threonine synthase; Validated
Probab=46.54 E-value=79 Score=24.17 Aligned_cols=63 Identities=22% Similarity=0.128 Sum_probs=36.0
Q ss_pred eCccccccCCCCCCCChHHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHHCCccceeeccc
Q 032621 50 FNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGG 112 (137)
Q Consensus 50 inip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~G 112 (137)
+.+-.+.++|.+.+.+......+......+...|+.+.+|..+..+|...+..|++-+.++..
T Consensus 74 l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~~~vv~aSsGN~g~alA~~aa~~G~~~~v~vp~ 136 (347)
T PRK08329 74 VYFKLDYLQPTGSFKDRGTYVTVAKLKEEGINEVVIDSSGNAALSLALYSLSEGIKVHVFVSY 136 (347)
T ss_pred EEEEeCCCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHcCCcEEEEECC
Confidence 444455556666554332222333332334455666678888888888888889873333433
No 240
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=46.51 E-value=75 Score=20.18 Aligned_cols=34 Identities=15% Similarity=0.040 Sum_probs=17.5
Q ss_pred CcEEEEeCCCc----hHHHHHHHHHHCCccceeecccc
Q 032621 80 DRLVVGCQSGA----RSLHATADLLGAGFKHVSNFGGG 113 (137)
Q Consensus 80 ~~iv~~c~~g~----ra~~~~~~l~~~G~~~v~~l~GG 113 (137)
..+|++|..-. ........|++.|.+++.++-||
T Consensus 51 ~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG 88 (122)
T cd02071 51 VDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGG 88 (122)
T ss_pred CCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEEC
Confidence 34555554322 23344455666666666666664
No 241
>PLN02541 uracil phosphoribosyltransferase
Probab=46.15 E-value=32 Score=25.22 Aligned_cols=33 Identities=21% Similarity=0.319 Sum_probs=25.4
Q ss_pred cCCCcEEEEeC---CCchHHHHHHHHHHCCcc--ceee
Q 032621 77 KEEDRLVVGCQ---SGARSLHATADLLGAGFK--HVSN 109 (137)
Q Consensus 77 ~~~~~iv~~c~---~g~ra~~~~~~l~~~G~~--~v~~ 109 (137)
+.++.|++++. +|..+..+...|++.|.+ ++.+
T Consensus 155 ~~~~~VlllDpmLATGgS~~~ai~~L~~~Gv~~~~I~~ 192 (244)
T PLN02541 155 PEGSRVLVVDPMLATGGTIVAAIDELVSRGASVEQIRV 192 (244)
T ss_pred CCCCEEEEECcchhhhHHHHHHHHHHHHcCCCcccEEE
Confidence 33456888777 788999999999999986 5543
No 242
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=45.99 E-value=55 Score=22.79 Aligned_cols=48 Identities=15% Similarity=0.048 Sum_probs=36.0
Q ss_pred hHHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHHCCccceeeccccH
Q 032621 66 PDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGH 114 (137)
Q Consensus 66 ~~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~ 114 (137)
..+.+.+...+.++..+++.+............+.+.|+. +.+.+||+
T Consensus 136 ~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~ 183 (202)
T PRK00121 136 PEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGF-LVSEAGDY 183 (202)
T ss_pred HHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccc-ccccchhh
Confidence 5677888777888888888887666677788888889975 65556543
No 243
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=45.71 E-value=39 Score=23.88 Aligned_cols=32 Identities=22% Similarity=0.225 Sum_probs=25.5
Q ss_pred CCCcEEEEeC---CCchHHHHHHHHHHCCccceee
Q 032621 78 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSN 109 (137)
Q Consensus 78 ~~~~iv~~c~---~g~ra~~~~~~l~~~G~~~v~~ 109 (137)
.++.|+++++ +|.....+...|++.|.++|.+
T Consensus 121 ~~~~VllvDd~laTG~Tl~~ai~~L~~~G~~~I~v 155 (207)
T TIGR01091 121 DERTVIVLDPMLATGGTMIAALDLLKKRGAKKIKV 155 (207)
T ss_pred CCCEEEEECCCccchHHHHHHHHHHHHcCCCEEEE
Confidence 4456777776 7889999999999999887653
No 244
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=45.65 E-value=58 Score=24.20 Aligned_cols=64 Identities=16% Similarity=0.165 Sum_probs=37.5
Q ss_pred eCccccccCCCCCCCChHHHHHHHhhccCCC----cEEEEeCCCchHHHHHHHHHHCCccceeecccc
Q 032621 50 FNIPYMFNTPEGRVKNPDFLKKVRSLCKEED----RLVVGCQSGARSLHATADLLGAGFKHVSNFGGG 113 (137)
Q Consensus 50 inip~~~~~~~~~~~~~~~~~~~~~~~~~~~----~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG 113 (137)
+.+-.+.++|.+.....-....+......+. ..|+-+.+|..+..+++..+.+|++-+.++...
T Consensus 25 i~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~ 92 (290)
T TIGR01138 25 VWLKLEGNNPAGSVKDRPALSMIVEAEKRGEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDN 92 (290)
T ss_pred EEEEEccCCCCccHHHHHHHHHHHHHHHcCCCCCCCEEEEECCChHHHHHHHHHHHcCCeEEEEECCC
Confidence 6666666677665543222223333222221 345567789999999999999999733344433
No 245
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=45.62 E-value=40 Score=22.91 Aligned_cols=32 Identities=9% Similarity=-0.050 Sum_probs=26.8
Q ss_pred CCCcEEEEeC---CCchHHHHHHHHHHCCccceee
Q 032621 78 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSN 109 (137)
Q Consensus 78 ~~~~iv~~c~---~g~ra~~~~~~l~~~G~~~v~~ 109 (137)
+++.++++++ +|.+...+...|++.|..++++
T Consensus 83 ~gk~vlivDDii~TG~Tl~~~~~~l~~~g~~~i~~ 117 (166)
T TIGR01203 83 KGKDVLIVEDIVDTGLTLQYLLDLLKARKPKSLKI 117 (166)
T ss_pred CCCEEEEEeeeeCcHHHHHHHHHHHHHCCCCEEEE
Confidence 4678999887 7889999999999999877653
No 246
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=45.61 E-value=35 Score=23.64 Aligned_cols=19 Identities=26% Similarity=0.235 Sum_probs=14.5
Q ss_pred CCCchHHHHHHHHHHCCcc
Q 032621 87 QSGARSLHATADLLGAGFK 105 (137)
Q Consensus 87 ~~g~ra~~~~~~l~~~G~~ 105 (137)
.+|.-|..+|+.|..+||+
T Consensus 8 SGGKDSSLaA~iL~klgye 26 (198)
T COG2117 8 SGGKDSSLAALILDKLGYE 26 (198)
T ss_pred cCCCchhHHHHHHHHhCCC
Confidence 3567788888888888886
No 247
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=45.59 E-value=51 Score=26.03 Aligned_cols=52 Identities=13% Similarity=0.194 Sum_probs=33.9
Q ss_pred HHHHHHHhhcc-CCCcEEEEeCCCchHHHHHHHHHH--CCccceeeccccHHHHH
Q 032621 67 DFLKKVRSLCK-EEDRLVVGCQSGARSLHATADLLG--AGFKHVSNFGGGHMAWV 118 (137)
Q Consensus 67 ~~~~~~~~~~~-~~~~iv~~c~~g~ra~~~~~~l~~--~G~~~v~~l~GG~~~w~ 118 (137)
++.+.+.+..+ ....-+++|++|..|-.+|-.|.. .|-++|..+.|+|.+|.
T Consensus 103 ~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 157 (443)
T PRK06058 103 AVAEQLNRLTPGDHEKRSALFNSGAEAVENAVKIARSYTGRQAVVVFDHAYHGRT 157 (443)
T ss_pred HHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHhhCCCeEEEECCCcCcCh
Confidence 45555555432 222467888999887777766554 36566878888887775
No 248
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=45.55 E-value=70 Score=27.55 Aligned_cols=40 Identities=15% Similarity=0.026 Sum_probs=33.6
Q ss_pred ccCCCcEEEEeCCCchHHHHHHHHHHCCccceeeccccHHH
Q 032621 76 CKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMA 116 (137)
Q Consensus 76 ~~~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~~~ 116 (137)
.....+++++|++-..+......|.+.|++ +..|.|....
T Consensus 421 ~~~~~pvLIft~s~~~se~ls~~L~~~gi~-~~~L~a~~~~ 460 (762)
T TIGR03714 421 HETGQPVLLITGSVEMSEIYSELLLREGIP-HNLLNAQNAA 460 (762)
T ss_pred hhCCCCEEEEECcHHHHHHHHHHHHHCCCC-EEEecCCChH
Confidence 356789999999988899999999999997 6778876553
No 249
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=45.44 E-value=33 Score=27.69 Aligned_cols=35 Identities=20% Similarity=0.091 Sum_probs=29.3
Q ss_pred CCCcEEEEeC---CCchHHHHHHHHHHCCccceeeccc
Q 032621 78 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSNFGG 112 (137)
Q Consensus 78 ~~~~iv~~c~---~g~ra~~~~~~l~~~G~~~v~~l~G 112 (137)
+++.|+++++ +|.....++..|++.|.+.|++.-.
T Consensus 355 ~gk~VlLVDDsittGtTl~~~~~~L~~aGak~V~~ri~ 392 (474)
T PRK06388 355 SGKRIVLVDDSIVRGNTMRFIVKIMRKYGAKEVHVRIG 392 (474)
T ss_pred cCceEEEEeCeECcHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 4678999998 5888999999999999988876554
No 250
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=45.27 E-value=38 Score=22.59 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=23.4
Q ss_pred EEEeCCCchHHHHHHHHHHCCccceeeccc
Q 032621 83 VVGCQSGARSLHATADLLGAGFKHVSNFGG 112 (137)
Q Consensus 83 v~~c~~g~ra~~~~~~l~~~G~~~v~~l~G 112 (137)
|.+|..|..+..+|..|...|++ |..+.-
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~-V~l~~~ 30 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHE-VTLWGR 30 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEE-EEEETS
T ss_pred EEEECcCHHHHHHHHHHHHcCCE-EEEEec
Confidence 56778899999999999999975 776543
No 251
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=45.16 E-value=41 Score=26.76 Aligned_cols=52 Identities=10% Similarity=0.082 Sum_probs=33.8
Q ss_pred HHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHH-----CC---ccceeeccccHHHHH
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLG-----AG---FKHVSNFGGGHMAWV 118 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~-----~G---~~~v~~l~GG~~~w~ 118 (137)
++.+.+.+..+..-.-+++|++|..|-.+|-.+.. .| -.+|..+.+||.+|.
T Consensus 101 ~lAe~L~~~~p~~~~~v~f~~sGseAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t 160 (453)
T PRK06943 101 ELAERLAALTGGTLGHAFFASDGASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGET 160 (453)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCc
Confidence 45555555433322467889999988777766642 24 345778888888875
No 252
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=45.06 E-value=88 Score=21.98 Aligned_cols=45 Identities=20% Similarity=0.294 Sum_probs=33.7
Q ss_pred HHHHHHHhhccCCCcEEEEeCCCch--HHHHHHHHHHCCccceeeccc
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSGAR--SLHATADLLGAGFKHVSNFGG 112 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g~r--a~~~~~~l~~~G~~~v~~l~G 112 (137)
-|..++.....+++-+++++.+|.. -..++..+++.|.+ +..+.|
T Consensus 98 ~f~~ql~~~~~~gDvli~iS~SG~s~~v~~a~~~Ak~~G~~-vI~IT~ 144 (196)
T PRK10886 98 VYAKQVRALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMT-IVALTG 144 (196)
T ss_pred HHHHHHHHcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence 5666776667788888888888863 56667888999987 666665
No 253
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=45.01 E-value=42 Score=27.87 Aligned_cols=44 Identities=11% Similarity=0.215 Sum_probs=31.5
Q ss_pred cEEEEeCCCc-----------hHHHHHHHHHHCCccceeeccccHHHHHhCCCcee
Q 032621 81 RLVVGCQSGA-----------RSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVK 125 (137)
Q Consensus 81 ~iv~~c~~g~-----------ra~~~~~~l~~~G~~~v~~l~GG~~~w~~~~~p~~ 125 (137)
+.+++|++.. .+...|.+++++|++ |.++......|.++..++.
T Consensus 290 RTvlVanTSn~Pv~aR~~s~ytgiTiAEYfRd~G~~-Vllm~DStSR~AeAlREIS 344 (586)
T PRK04192 290 RTVLIANTSNMPVAAREASIYTGITIAEYYRDMGYD-VLLMADSTSRWAEALREIS 344 (586)
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCC-EEEEecChHHHHHHHHHHH
Confidence 4566666542 256667889999985 8888889999987754443
No 254
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=44.83 E-value=39 Score=26.94 Aligned_cols=35 Identities=26% Similarity=0.154 Sum_probs=29.6
Q ss_pred CCCcEEEEeC---CCchHHHHHHHHHHCCccceeeccc
Q 032621 78 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSNFGG 112 (137)
Q Consensus 78 ~~~~iv~~c~---~g~ra~~~~~~l~~~G~~~v~~l~G 112 (137)
+++.|+++++ +|.....++..|++.|.+.|.+.-.
T Consensus 337 ~gk~v~lvDD~ittG~T~~~~~~~l~~~ga~~v~~~~~ 374 (442)
T TIGR01134 337 RGKRVVLVDDSIVRGTTSRQIVKMLRDAGAKEVHVRIA 374 (442)
T ss_pred CCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEEc
Confidence 5788999998 6888999999999999988876554
No 255
>PRK07480 putative aminotransferase; Validated
Probab=44.47 E-value=45 Score=26.60 Aligned_cols=53 Identities=13% Similarity=0.083 Sum_probs=33.1
Q ss_pred HHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHHC-----C---ccceeeccccHHHHHh
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGA-----G---FKHVSNFGGGHMAWVQ 119 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~~-----G---~~~v~~l~GG~~~w~~ 119 (137)
++.+.+.+..+.+..-+++|++|..|-.+|-.|... | -.+|..+.|||.+|..
T Consensus 98 ~lae~L~~~~p~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl 158 (456)
T PRK07480 98 ELAAKLAEVAPPGFNHVFFTNSGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTV 158 (456)
T ss_pred HHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcch
Confidence 456666555443334577888998877776655432 3 3346677888777653
No 256
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=44.45 E-value=47 Score=26.05 Aligned_cols=54 Identities=15% Similarity=0.238 Sum_probs=34.5
Q ss_pred HHHHHHHhhcc-CCCcEEEEeCCCchHHHHHHHHHH--CCccceeeccccHHHHHhC
Q 032621 67 DFLKKVRSLCK-EEDRLVVGCQSGARSLHATADLLG--AGFKHVSNFGGGHMAWVQN 120 (137)
Q Consensus 67 ~~~~~~~~~~~-~~~~iv~~c~~g~ra~~~~~~l~~--~G~~~v~~l~GG~~~w~~~ 120 (137)
++.+.+.+..+ .+-.-+++|++|..|-.+|-.|.. .|-++|..+.|||.+|...
T Consensus 87 ~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~ 143 (421)
T PRK06777 87 TLAERINALAPIDGPAKTAFFTTGAEAVENAVKIARAYTGRPGVIAFGGAFHGRTLL 143 (421)
T ss_pred HHHHHHHHhCCCCCCceEEEeCCcHHHHHHHHHHHHHhhCCCeEEEEcCCcCCccHH
Confidence 45555555432 222356777899988877776654 3656677888888777533
No 257
>PRK11761 cysM cysteine synthase B; Provisional
Probab=44.41 E-value=92 Score=23.21 Aligned_cols=62 Identities=18% Similarity=0.149 Sum_probs=36.9
Q ss_pred eCccccccCCCCCCCChHHHHHHHhhc-----cCCCcEEEEeCCCchHHHHHHHHHHCCccceeeccc
Q 032621 50 FNIPYMFNTPEGRVKNPDFLKKVRSLC-----KEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGG 112 (137)
Q Consensus 50 inip~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~G 112 (137)
+.+-.+.++|.+.+...-....+.... .+++. |+-+.+|..+..+|+..+.+|++-+.++..
T Consensus 29 i~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~-vv~aSsGN~g~alA~~a~~~G~~~~i~~p~ 95 (296)
T PRK11761 29 ILAKLEGNNPAGSVKDRPALSMIVQAEKRGEIKPGDT-LIEATSGNTGIALAMIAAIKGYRMKLIMPE 95 (296)
T ss_pred EEEEEcccCCCCCchhHHHHHHHHHHHHcCCCCCCCE-EEEeCCChHHHHHHHHHHHcCCCEEEEECC
Confidence 667777777777665432222232221 22233 444667888888898999999973334443
No 258
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=44.28 E-value=90 Score=21.09 Aligned_cols=44 Identities=16% Similarity=0.157 Sum_probs=30.3
Q ss_pred HHhhccCCCcEEEEeCCCc--hHHHHHHHHHH---CCccceeeccccHHHH
Q 032621 72 VRSLCKEEDRLVVGCQSGA--RSLHATADLLG---AGFKHVSNFGGGHMAW 117 (137)
Q Consensus 72 ~~~~~~~~~~iv~~c~~g~--ra~~~~~~l~~---~G~~~v~~l~GG~~~w 117 (137)
+...++ ++-+|+.|..|. .|...|.++.+ .| .++.++-||-.++
T Consensus 59 il~~~~-~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g-~~i~FvIGGa~G~ 107 (153)
T TIGR00246 59 ILAAIG-KAHVVTLDIPGKPWTTPQLADTLEKWKTDG-RDVTLLIGGPEGL 107 (153)
T ss_pred HHHhCC-CCeEEEEcCCCCcCCHHHHHHHHHHHhccC-CeEEEEEcCCCcC
Confidence 333344 456777777776 68888888874 56 4799999986544
No 259
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=44.09 E-value=39 Score=21.74 Aligned_cols=39 Identities=10% Similarity=0.076 Sum_probs=30.1
Q ss_pred EEEeCCCchHHHHHHHHHHCCccceeeccccHHHHHhCC
Q 032621 83 VVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNG 121 (137)
Q Consensus 83 v~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~~~w~~~~ 121 (137)
|+++..|.-...++..|...|+.++.++|...-...+-.
T Consensus 5 v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~ 43 (135)
T PF00899_consen 5 VLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLN 43 (135)
T ss_dssp EEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCC
T ss_pred EEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccc
Confidence 455567778888999999999999999999876655543
No 260
>PRK08349 hypothetical protein; Validated
Probab=44.01 E-value=44 Score=23.21 Aligned_cols=24 Identities=29% Similarity=0.153 Sum_probs=14.1
Q ss_pred EEEEeCCCchHHHHHHHHHHCCcc
Q 032621 82 LVVGCQSGARSLHATADLLGAGFK 105 (137)
Q Consensus 82 iv~~c~~g~ra~~~~~~l~~~G~~ 105 (137)
+|+...+|.-|..+++.|...|++
T Consensus 3 ~vvllSGG~DS~v~~~~l~~~g~~ 26 (198)
T PRK08349 3 AVALLSSGIDSPVAIYLMLRRGVE 26 (198)
T ss_pred EEEEccCChhHHHHHHHHHHcCCe
Confidence 344455566666666666666663
No 261
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=44.01 E-value=62 Score=25.48 Aligned_cols=65 Identities=15% Similarity=0.140 Sum_probs=38.6
Q ss_pred eCccccccCCCCCCCChHHHHHHHhhccCCC----cEEEEeCCCchHHHHHHHHHHCCccceeeccccH
Q 032621 50 FNIPYMFNTPEGRVKNPDFLKKVRSLCKEED----RLVVGCQSGARSLHATADLLGAGFKHVSNFGGGH 114 (137)
Q Consensus 50 inip~~~~~~~~~~~~~~~~~~~~~~~~~~~----~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~ 114 (137)
+.+-.+.++|.+.+...-....+......+. ..|+-|.+|..+...|+..+.+|++-..++..+.
T Consensus 28 i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~vv~~ssGN~g~alA~~a~~~G~~~~iv~p~~~ 96 (454)
T TIGR01137 28 LLAKCEFFNPGGSVKDRIALRMIEDAEASGRLKPGDTIIEPTSGNTGIGLALVAAIKGYKCIIVLPEKM 96 (454)
T ss_pred EEEEEhhcCCCcchHHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence 6666666677665543322222322222221 4566678899999999999999997333444333
No 262
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=43.97 E-value=34 Score=26.53 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=18.9
Q ss_pred cEEEEeCCCchHHHHHHHHHHCCcc
Q 032621 81 RLVVGCQSGARSLHATADLLGAGFK 105 (137)
Q Consensus 81 ~iv~~c~~g~ra~~~~~~l~~~G~~ 105 (137)
+|++--.+|.-|+.+|..|++.||+
T Consensus 2 kV~vamSGGVDSsvaA~LLk~~G~~ 26 (356)
T PF03054_consen 2 KVLVAMSGGVDSSVAAALLKEQGYD 26 (356)
T ss_dssp EEEEE--SSHHHHHHHHHHHHCT-E
T ss_pred eEEEEccCCHHHHHHHHHHHhhccc
Confidence 4666666788999999999999997
No 263
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=43.85 E-value=53 Score=25.95 Aligned_cols=51 Identities=8% Similarity=0.053 Sum_probs=33.1
Q ss_pred HHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHHC--------CccceeeccccHHHH
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGA--------GFKHVSNFGGGHMAW 117 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~~--------G~~~v~~l~GG~~~w 117 (137)
++.+.+.+..+.+-.-+++|++|..|-.+|-.|... |-++|..+.|||.++
T Consensus 91 ~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~ 149 (429)
T PRK06173 91 ELAQKLLEILPPSLNKIFFADSGSVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGD 149 (429)
T ss_pred HHHHHHHhhCCCCcCEEEEeCCchHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCc
Confidence 455566555433445688999999887777665441 334577788877663
No 264
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=43.80 E-value=1.5e+02 Score=23.83 Aligned_cols=89 Identities=15% Similarity=0.094 Sum_probs=50.0
Q ss_pred eeCHHHHHHHhhC----C-CEEEecCChHHHhccCCCCceeeCccccccCCCCCCCChHHHHHHHhhccCCCcEEEEeCC
Q 032621 14 TVDVRAAKNLLES----G-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQS 88 (137)
Q Consensus 14 ~is~~~~~~~~~~----~-~~viDvR~~~e~~~g~ipga~~inip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~ 88 (137)
.++.+++.++++. + -.+|.|++.+|.+..---|+..+-|..-.+ .+..+ +..-..++...++ +.+++++-+
T Consensus 142 ~L~~~~l~~l~~~a~~lGl~~lvEvh~~~El~~al~~~a~iiGiNnRdL-~t~~v-d~~~~~~l~~~ip--~~~~~vseS 217 (454)
T PRK09427 142 VLDDEQYRQLAAVAHSLNMGVLTEVSNEEELERAIALGAKVIGINNRNL-RDLSI-DLNRTRELAPLIP--ADVIVISES 217 (454)
T ss_pred hCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHhCCCCEEEEeCCCC-ccceE-CHHHHHHHHhhCC--CCcEEEEeC
Confidence 3445555555543 4 579999999998764333443333222100 11111 2234445555554 346778889
Q ss_pred CchHHHHHHHHHHCCccce
Q 032621 89 GARSLHATADLLGAGFKHV 107 (137)
Q Consensus 89 g~ra~~~~~~l~~~G~~~v 107 (137)
|..+..-...|.. |++-+
T Consensus 218 GI~t~~d~~~~~~-~~dav 235 (454)
T PRK09427 218 GIYTHAQVRELSP-FANGF 235 (454)
T ss_pred CCCCHHHHHHHHh-cCCEE
Confidence 9988777777765 67633
No 265
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=43.61 E-value=41 Score=25.32 Aligned_cols=34 Identities=12% Similarity=0.056 Sum_probs=27.5
Q ss_pred CCCcEEEEeC---CCchHHHHHHHHHHCCccceeecc
Q 032621 78 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSNFG 111 (137)
Q Consensus 78 ~~~~iv~~c~---~g~ra~~~~~~l~~~G~~~v~~l~ 111 (137)
+++.++++++ +|.....++..|++.|..+++.+.
T Consensus 201 ~g~~viivDDii~TG~Tl~~a~~~l~~~Ga~~v~~~~ 237 (302)
T PLN02369 201 KGKVAIMVDDMIDTAGTITKGAALLHQEGAREVYACA 237 (302)
T ss_pred CCCEEEEEcCcccchHHHHHHHHHHHhCCCCEEEEEE
Confidence 4567888877 688888999999999998877544
No 266
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=43.50 E-value=52 Score=22.39 Aligned_cols=31 Identities=26% Similarity=0.200 Sum_probs=26.0
Q ss_pred cCCCcEEEEeC---CCchHHHHHHHHHHCCccce
Q 032621 77 KEEDRLVVGCQ---SGARSLHATADLLGAGFKHV 107 (137)
Q Consensus 77 ~~~~~iv~~c~---~g~ra~~~~~~l~~~G~~~v 107 (137)
.+++.|+++++ +|.....+...|++.|.+.+
T Consensus 112 ~~g~~VLIVDDivtTG~Tl~~~~~~l~~~Ga~~v 145 (175)
T PRK02304 112 KPGDRVLIVDDLLATGGTLEAAIKLLERLGAEVV 145 (175)
T ss_pred CCCCEEEEEeCCccccHHHHHHHHHHHHcCCEEE
Confidence 57888999998 68888888899999998754
No 267
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=43.48 E-value=44 Score=23.59 Aligned_cols=31 Identities=23% Similarity=0.308 Sum_probs=25.0
Q ss_pred CCCcEEEEeC---CCchHHHHHHHHHHCCcccee
Q 032621 78 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVS 108 (137)
Q Consensus 78 ~~~~iv~~c~---~g~ra~~~~~~l~~~G~~~v~ 108 (137)
.++.++++++ +|.....+...|++.|.++|.
T Consensus 123 ~~~~VllvDd~laTG~Tl~~ai~~L~~~G~~~I~ 156 (209)
T PRK00129 123 DERTVIVVDPMLATGGSAIAAIDLLKKRGAKNIK 156 (209)
T ss_pred CCCEEEEECCcccchHHHHHHHHHHHHcCCCEEE
Confidence 4566777776 788999999999999987765
No 268
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=43.24 E-value=38 Score=22.28 Aligned_cols=29 Identities=17% Similarity=0.075 Sum_probs=22.9
Q ss_pred EEEeCCCchHHHHHHHHHHCCccceeeccc
Q 032621 83 VVGCQSGARSLHATADLLGAGFKHVSNFGG 112 (137)
Q Consensus 83 v~~c~~g~ra~~~~~~l~~~G~~~v~~l~G 112 (137)
++++..|.-+...+..++.+||+ |.+++-
T Consensus 1 L~I~GaG~va~al~~la~~lg~~-v~v~d~ 29 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFR-VTVVDP 29 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEE-EEEEES
T ss_pred CEEEeCcHHHHHHHHHHHhCCCE-EEEEcC
Confidence 45677888999999999999996 777765
No 269
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=43.15 E-value=63 Score=25.69 Aligned_cols=38 Identities=13% Similarity=0.174 Sum_probs=31.2
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHHCCccceeeccccHHH
Q 032621 78 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMA 116 (137)
Q Consensus 78 ~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~~~ 116 (137)
...+++++|++-..+...+..|...|+. +..+.|++..
T Consensus 334 ~~~~~IVF~~s~~~~~~l~~~L~~~~~~-~~~~~g~~~~ 371 (475)
T PRK01297 334 PWERVMVFANRKDEVRRIEERLVKDGIN-AAQLSGDVPQ 371 (475)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCC-EEEEECCCCH
Confidence 3457999999988899999999999986 7788887543
No 270
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=43.11 E-value=51 Score=25.97 Aligned_cols=53 Identities=17% Similarity=0.335 Sum_probs=35.5
Q ss_pred HHHHHHHhhccCC-CcEEEEeCCCchHHHHHHHHHH--CCccceeeccccHHHHHh
Q 032621 67 DFLKKVRSLCKEE-DRLVVGCQSGARSLHATADLLG--AGFKHVSNFGGGHMAWVQ 119 (137)
Q Consensus 67 ~~~~~~~~~~~~~-~~iv~~c~~g~ra~~~~~~l~~--~G~~~v~~l~GG~~~w~~ 119 (137)
++.+.+.+..+.. ..-+++|++|..|-.+|-.|.. .|-++|..+.|+|.+|..
T Consensus 87 ~la~~l~~~~p~~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~ 142 (425)
T PRK07495 87 RLAERLNALVPGDFAKKTIFVTTGAEAVENAVKIARAATGRSAVIAFGGGFHGRTF 142 (425)
T ss_pred HHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCccH
Confidence 4555665553322 2458889999988877776654 365667788888887753
No 271
>PRK06260 threonine synthase; Validated
Probab=43.10 E-value=80 Score=24.63 Aligned_cols=64 Identities=19% Similarity=0.149 Sum_probs=38.4
Q ss_pred eCccccccCCCCCCCChHHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHHCCccceeecccc
Q 032621 50 FNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGG 113 (137)
Q Consensus 50 inip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG 113 (137)
+.+-.+.++|.+.+.+.-....+......+...|+.+.+|..+..+|...+..|++-+.++..+
T Consensus 85 l~~K~E~~nPTGSfKdRga~~~v~~a~~~g~~~vv~aSsGN~g~alA~~aa~~G~~~~i~vP~~ 148 (397)
T PRK06260 85 LYVKHEGANPTGSFKDRGMTVGVTKALELGVKTVACASTGNTSASLAAYAARAGLKCYVLLPAG 148 (397)
T ss_pred EEEEeCCCCCCcCcHHHHHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 5556666667665543322222333333455566667788888888888888999744445433
No 272
>PRK07046 aminotransferase; Validated
Probab=43.07 E-value=39 Score=26.92 Aligned_cols=49 Identities=8% Similarity=-0.071 Sum_probs=33.6
Q ss_pred HHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHH--CCccceeeccccHHHHH
Q 032621 68 FLKKVRSLCKEEDRLVVGCQSGARSLHATADLLG--AGFKHVSNFGGGHMAWV 118 (137)
Q Consensus 68 ~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~--~G~~~v~~l~GG~~~w~ 118 (137)
+.+.+.+.++ -.-+.+|++|..|...|-.|.. -|-++|..+.|+|.+|.
T Consensus 120 lAe~l~~~~~--~~~v~F~nSGtEA~e~AlrlAR~~TGr~~ii~~~g~YHG~~ 170 (453)
T PRK07046 120 VGEELARRFG--LPYWQVATTATDANRFVLRWARAVTGRPKILVFNGCYHGTV 170 (453)
T ss_pred HHHHHHHHhC--CCEEEEECCHHHHHHHHHHHHHHhhCCCEEEEECCCCCCCc
Confidence 4444444432 3457889999988877776655 37677888899888874
No 273
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=42.99 E-value=53 Score=26.08 Aligned_cols=52 Identities=15% Similarity=0.101 Sum_probs=32.4
Q ss_pred HHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHHC-----C---ccceeeccccHHHHH
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGA-----G---FKHVSNFGGGHMAWV 118 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~~-----G---~~~v~~l~GG~~~w~ 118 (137)
++.+++.+..+.+-.-|++|++|..|-.+|-.|... | -++|..+.|||.+|.
T Consensus 96 ~la~~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t 155 (445)
T PRK09221 96 ELAERLAELAPGGLDHVFFTNSGSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVG 155 (445)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccc
Confidence 455566555333334577788998877766655431 3 345777888887764
No 274
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=42.92 E-value=50 Score=22.68 Aligned_cols=31 Identities=16% Similarity=0.100 Sum_probs=25.2
Q ss_pred CCCcEEEEeC---CCchHHHHHHHHHHCCcccee
Q 032621 78 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVS 108 (137)
Q Consensus 78 ~~~~iv~~c~---~g~ra~~~~~~l~~~G~~~v~ 108 (137)
+++.|+++++ +|.....+++.|++.|-+.|.
T Consensus 119 ~gk~VLIVDDiitTG~Tl~aa~~~L~~~GA~~V~ 152 (178)
T PRK07322 119 KGKRVAIVDDVVSTGGTLTALERLVERAGGQVVA 152 (178)
T ss_pred CCCEEEEEeccccccHHHHHHHHHHHHcCCEEEE
Confidence 5678999988 688888889999999976443
No 275
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=42.65 E-value=61 Score=24.06 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=20.4
Q ss_pred ccCCCcEEEEeCCCc-hHH--HHHHHHHHCCc
Q 032621 76 CKEEDRLVVGCQSGA-RSL--HATADLLGAGF 104 (137)
Q Consensus 76 ~~~~~~iv~~c~~g~-ra~--~~~~~l~~~G~ 104 (137)
...+..++++|..|. ||+ ..|..++..|+
T Consensus 152 ~~~~~~vlVHC~~GvSRSat~viAYlM~~~~~ 183 (285)
T KOG1716|consen 152 REKGGKVLVHCQAGVSRSATLVIAYLMKYEGL 183 (285)
T ss_pred HhCCCeEEEEcCCccchhHHHHHHHHHHHcCC
Confidence 557888999999887 654 34555555665
No 276
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=42.19 E-value=33 Score=28.15 Aligned_cols=37 Identities=11% Similarity=0.113 Sum_probs=30.9
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHHCCccceeeccccHH
Q 032621 78 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM 115 (137)
Q Consensus 78 ~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~~ 115 (137)
.+...++||++-..+..++..|...|+. +..+.||+.
T Consensus 223 ~~~~~IIf~~sr~~~e~la~~L~~~g~~-~~~~H~~l~ 259 (591)
T TIGR01389 223 RGQSGIIYASSRKKVEELAERLESQGIS-ALAYHAGLS 259 (591)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhCCCC-EEEEECCCC
Confidence 3567899999988899999999999986 777888754
No 277
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=42.14 E-value=1.1e+02 Score=21.08 Aligned_cols=30 Identities=27% Similarity=0.312 Sum_probs=26.2
Q ss_pred ccCCCcEEEEeC---CCchHHHHHHHHHHCCcc
Q 032621 76 CKEEDRLVVGCQ---SGARSLHATADLLGAGFK 105 (137)
Q Consensus 76 ~~~~~~iv~~c~---~g~ra~~~~~~l~~~G~~ 105 (137)
+.++++++++++ +|.....+...+++.|.+
T Consensus 104 ~~~g~~VlIVDDvitTG~Tl~~~~~~l~~~Ga~ 136 (176)
T PRK13812 104 LDEGEEVVVLEDIATTGQSAVDAVEALREAGAT 136 (176)
T ss_pred CCCcCEEEEEEEeeCCCHHHHHHHHHHHHCCCe
Confidence 457899999998 788999999999999975
No 278
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=42.04 E-value=61 Score=22.50 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=14.7
Q ss_pred cCCCcEEEEeCCCc-hHHHHH
Q 032621 77 KEEDRLVVGCQSGA-RSLHAT 96 (137)
Q Consensus 77 ~~~~~iv~~c~~g~-ra~~~~ 96 (137)
....+|+++|..|. ||...+
T Consensus 168 ~~~~pivVhc~~G~gRsg~f~ 188 (235)
T PF00102_consen 168 DPNGPIVVHCSDGVGRSGTFC 188 (235)
T ss_dssp TTSSEEEEESSSSSHHHHHHH
T ss_pred CCccceEeecccccccccccc
Confidence 46789999999876 655444
No 279
>PRK08197 threonine synthase; Validated
Probab=42.00 E-value=94 Score=24.21 Aligned_cols=65 Identities=12% Similarity=-0.011 Sum_probs=37.5
Q ss_pred eCccccccCCCCCCCChHHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHHCCccceeeccccH
Q 032621 50 FNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGH 114 (137)
Q Consensus 50 inip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~ 114 (137)
+.+-.+.++|.+.+.+.-..-.+......+...|+.+.+|..+..+|...+..|++-..++..+.
T Consensus 97 l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~~~vv~aSsGN~g~alA~~aa~~G~~~~v~vp~~~ 161 (394)
T PRK08197 97 LWVKDEGLNPTGSFKARGLAVGVSRAKELGVKHLAMPTNGNAGAAWAAYAARAGIRATIFMPADA 161 (394)
T ss_pred EEEEeCCCCCCcCcHHhHHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEEcCCC
Confidence 44555555666655433222223222334455566667888888888888889987333444333
No 280
>PLN02440 amidophosphoribosyltransferase
Probab=41.98 E-value=39 Score=27.26 Aligned_cols=35 Identities=31% Similarity=0.185 Sum_probs=29.5
Q ss_pred CCCcEEEEeC---CCchHHHHHHHHHHCCccceeeccc
Q 032621 78 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSNFGG 112 (137)
Q Consensus 78 ~~~~iv~~c~---~g~ra~~~~~~l~~~G~~~v~~l~G 112 (137)
+++.|+|+++ +|.....+++.|++.|.+.|++...
T Consensus 339 ~gk~VlLVDDiittGtTl~~i~~~L~~aGa~~V~v~v~ 376 (479)
T PLN02440 339 EGKRVVVVDDSIVRGTTSSKIVRMLREAGAKEVHMRIA 376 (479)
T ss_pred cCceEEEEeceeCcHHHHHHHHHHHHhcCCCEEEEEEE
Confidence 5678999998 6889999999999999988876554
No 281
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=41.75 E-value=63 Score=28.10 Aligned_cols=37 Identities=22% Similarity=0.150 Sum_probs=32.1
Q ss_pred ccCCCcEEEEeCCCchHHHHHHHHHHCCccceeecccc
Q 032621 76 CKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGG 113 (137)
Q Consensus 76 ~~~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG 113 (137)
...+.+++|.|.+-..|...+..|.+.|++ ...|.+.
T Consensus 427 ~~~grpVLIft~Si~~se~Ls~~L~~~gi~-~~vLnak 463 (830)
T PRK12904 427 HKKGQPVLVGTVSIEKSELLSKLLKKAGIP-HNVLNAK 463 (830)
T ss_pred HhcCCCEEEEeCcHHHHHHHHHHHHHCCCc-eEeccCc
Confidence 357789999999999999999999999997 6677775
No 282
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=41.71 E-value=37 Score=26.54 Aligned_cols=35 Identities=26% Similarity=0.472 Sum_probs=28.4
Q ss_pred CcEEEEeCC----Cc--hHHHHHHHHHHC--CccceeeccccHH
Q 032621 80 DRLVVGCQS----GA--RSLHATADLLGA--GFKHVSNFGGGHM 115 (137)
Q Consensus 80 ~~iv~~c~~----g~--ra~~~~~~l~~~--G~~~v~~l~GG~~ 115 (137)
.+|++||.. |. |+...+..|.+- |++ |.++.||-.
T Consensus 10 ~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~-Il~IsG~~~ 52 (400)
T COG4671 10 PRILFYSHDLLGLGHLRRALRIAHALVEDYLGFD-ILIISGGPP 52 (400)
T ss_pred ceEEEEehhhccchHHHHHHHHHHHHhhcccCce-EEEEeCCCc
Confidence 479999993 32 789999999885 997 999999854
No 283
>PLN02293 adenine phosphoribosyltransferase
Probab=41.42 E-value=57 Score=22.73 Aligned_cols=32 Identities=25% Similarity=0.163 Sum_probs=26.8
Q ss_pred ccCCCcEEEEeC---CCchHHHHHHHHHHCCccce
Q 032621 76 CKEEDRLVVGCQ---SGARSLHATADLLGAGFKHV 107 (137)
Q Consensus 76 ~~~~~~iv~~c~---~g~ra~~~~~~l~~~G~~~v 107 (137)
+.+++.++++++ +|.....+...+++.|.+-+
T Consensus 122 i~~G~rVlIVDDvitTG~T~~~~~~~l~~~Ga~~v 156 (187)
T PLN02293 122 VEPGERALVIDDLIATGGTLCAAINLLERAGAEVV 156 (187)
T ss_pred cCCCCEEEEEeccccchHHHHHHHHHHHHCCCEEE
Confidence 457889999988 78889999999999998643
No 284
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=41.11 E-value=61 Score=24.33 Aligned_cols=63 Identities=17% Similarity=0.171 Sum_probs=34.6
Q ss_pred eCccccccCCCCCCCChHHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHHCCccceeeccc
Q 032621 50 FNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGG 112 (137)
Q Consensus 50 inip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~G 112 (137)
+.+-.+.+.+.+.+.+.-....+......+...|+.+.+|..+..+++..+..|++=+.++..
T Consensus 41 i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~~~vv~aSsGN~g~a~A~~a~~~g~~~~v~~p~ 103 (328)
T TIGR00260 41 LYVLELFHNPTLSFKDRGMAVALTKALELGNDTVLCASTGNTGAAAAAYAGKAGVKVVILYPA 103 (328)
T ss_pred EEehhhccCCchhhHhhhHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHhccCCCcEEEEECC
Confidence 445555555555443332333333222333445566667888888888888888873334443
No 285
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=41.01 E-value=50 Score=25.96 Aligned_cols=52 Identities=17% Similarity=0.204 Sum_probs=34.8
Q ss_pred HHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHH--CCccceeeccccHHHHHh
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLG--AGFKHVSNFGGGHMAWVQ 119 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~--~G~~~v~~l~GG~~~w~~ 119 (137)
++.+.+.+..+ +..-+++|++|..|-.+|-.|.. .|-++|..+.|||.+|..
T Consensus 97 ~la~~l~~~~p-~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~ 150 (428)
T PRK12389 97 EFAKMLKEAIP-SLEKVRFVNSGTEAVMTTIRVARAYTGRTKIIKFAGCYHGHSD 150 (428)
T ss_pred HHHHHHHHhCC-CCcEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCChH
Confidence 44555544432 33457889999988887776655 365667788888887754
No 286
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=40.94 E-value=59 Score=25.50 Aligned_cols=53 Identities=17% Similarity=0.258 Sum_probs=34.3
Q ss_pred HHHHHHHhhcc-CCCcEEEEeCCCchHHHHHHHHHH--CCccceeeccccHHHHHh
Q 032621 67 DFLKKVRSLCK-EEDRLVVGCQSGARSLHATADLLG--AGFKHVSNFGGGHMAWVQ 119 (137)
Q Consensus 67 ~~~~~~~~~~~-~~~~iv~~c~~g~ra~~~~~~l~~--~G~~~v~~l~GG~~~w~~ 119 (137)
++.+.+.+..+ .+..-+++|++|..|-.+|-.|.. -|-++|..+.|||.+|..
T Consensus 87 ~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~ 142 (421)
T PRK09792 87 TLAEKINALAPVSGQAKTAFFTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRTY 142 (421)
T ss_pred HHHHHHHHhCCCCCCceEEEeCChHHHHHHHHHHHHHhcCCCeEEEECCCcCCccH
Confidence 45556655432 222356677799988877776655 365667788888887753
No 287
>PRK10717 cysteine synthase A; Provisional
Probab=40.87 E-value=1e+02 Score=23.30 Aligned_cols=65 Identities=18% Similarity=0.143 Sum_probs=37.3
Q ss_pred eCccccccCCCCCCCChHHHHHHHhhccCCC----cEEEEeCCCchHHHHHHHHHHCCccceeeccccH
Q 032621 50 FNIPYMFNTPEGRVKNPDFLKKVRSLCKEED----RLVVGCQSGARSLHATADLLGAGFKHVSNFGGGH 114 (137)
Q Consensus 50 inip~~~~~~~~~~~~~~~~~~~~~~~~~~~----~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~ 114 (137)
+.+-.+.+++.+.+...-....+......+. ..|+-+.+|..+..++...+.+|++=..++..+.
T Consensus 30 i~~K~E~~nptGS~K~Rga~~~v~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~vv~p~~~ 98 (330)
T PRK10717 30 ILGKAEFLNPGGSVKDRAALNIIWDAEKRGLLKPGGTIVEGTAGNTGIGLALVAAARGYKTVIVMPETQ 98 (330)
T ss_pred EEEEeeccCCCCCchHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 6666666666665543222222222222221 3455577888888889898999997333444444
No 288
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=40.81 E-value=53 Score=24.20 Aligned_cols=32 Identities=34% Similarity=0.419 Sum_probs=24.2
Q ss_pred cEEEEeC---CCc--hHHHHHHHHHHCCcc-ceeeccc
Q 032621 81 RLVVGCQ---SGA--RSLHATADLLGAGFK-HVSNFGG 112 (137)
Q Consensus 81 ~iv~~c~---~g~--ra~~~~~~l~~~G~~-~v~~l~G 112 (137)
++|++|. +|. ||......|++.|.+ .|++.+.
T Consensus 2 pLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~d 39 (281)
T KOG3062|consen 2 PLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDD 39 (281)
T ss_pred CeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEech
Confidence 5788888 454 788899999999976 5666654
No 289
>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=40.58 E-value=52 Score=25.91 Aligned_cols=52 Identities=15% Similarity=0.139 Sum_probs=33.0
Q ss_pred HHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHHC-----C---ccceeeccccHHHHH
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGA-----G---FKHVSNFGGGHMAWV 118 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~~-----G---~~~v~~l~GG~~~w~ 118 (137)
++.+.+.+..+.+-.-+++|++|..|-.+|-.+... | -.+|..+.|+|.++.
T Consensus 87 ~lae~L~~~~p~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t 146 (422)
T PRK05630 87 KLTRKLLNLTDNGLDHVFYSDSGSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDT 146 (422)
T ss_pred HHHHHHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcc
Confidence 456666655433334688999999887776665431 2 234777888777654
No 290
>PRK11018 hypothetical protein; Provisional
Probab=40.46 E-value=77 Score=18.58 Aligned_cols=40 Identities=20% Similarity=0.178 Sum_probs=28.5
Q ss_pred HHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHHCCcccee
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVS 108 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~ 108 (137)
.....+.++ ..+..+.+.++..........+++..||+ +.
T Consensus 24 ~~kk~l~~l-~~G~~L~V~~d~~~a~~di~~~~~~~G~~-v~ 63 (78)
T PRK11018 24 ATLEALPQL-KKGEILEVVSDCPQSINNIPLDARNHGYT-VL 63 (78)
T ss_pred HHHHHHHhC-CCCCEEEEEeCCccHHHHHHHHHHHcCCE-EE
Confidence 344455444 67777777777777777888899999997 53
No 291
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=40.31 E-value=1e+02 Score=22.91 Aligned_cols=33 Identities=18% Similarity=0.167 Sum_probs=22.3
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHCCccceeeccc
Q 032621 79 EDRLVVGCQSGARSLHATADLLGAGFKHVSNFGG 112 (137)
Q Consensus 79 ~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~G 112 (137)
++.+++. ..|.-+..++..|.+.|+++|+++.-
T Consensus 126 ~k~vlI~-GAGGagrAia~~La~~G~~~V~I~~R 158 (289)
T PRK12548 126 GKKLTVI-GAGGAATAIQVQCALDGAKEITIFNI 158 (289)
T ss_pred CCEEEEE-CCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence 4445444 44666666777888999988887653
No 292
>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=40.31 E-value=61 Score=25.88 Aligned_cols=54 Identities=26% Similarity=0.293 Sum_probs=35.0
Q ss_pred HHHHHHHhhccCC---CcEEEEeCCCchHHHHHHHHHH--CCccceeeccccHHHHHhC
Q 032621 67 DFLKKVRSLCKEE---DRLVVGCQSGARSLHATADLLG--AGFKHVSNFGGGHMAWVQN 120 (137)
Q Consensus 67 ~~~~~~~~~~~~~---~~iv~~c~~g~ra~~~~~~l~~--~G~~~v~~l~GG~~~w~~~ 120 (137)
++.+.+.+..+.. ..+++++++|..|-.+|-.|.. .|-++|..+.|||.+|...
T Consensus 105 ~lAe~L~~~~p~~~~~~~~~f~~~SGsEAve~AlklAr~~tgr~~Ii~~~~~yHG~t~~ 163 (459)
T PRK06931 105 AFSEYLLSLLPGQGKEYCLQFTGPSGADAVEAAIKLAKTYTGRSNVISFSGGYHGMTHG 163 (459)
T ss_pred HHHHHHHHhCCCccccceEEEeCCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHH
Confidence 4555555543221 2466777899988877776654 4666787888888877543
No 293
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.16 E-value=43 Score=26.79 Aligned_cols=29 Identities=21% Similarity=0.423 Sum_probs=22.1
Q ss_pred EEEEeCCCch---HHHHHHHHHHCCccceeec
Q 032621 82 LVVGCQSGAR---SLHATADLLGAGFKHVSNF 110 (137)
Q Consensus 82 iv~~c~~g~r---a~~~~~~l~~~G~~~v~~l 110 (137)
|++.|..|.+ ...++++|...||..+.++
T Consensus 269 V~Ilcgpgnnggdg~v~gRHL~~~G~~~vi~~ 300 (453)
T KOG2585|consen 269 VAILCGPGNNGGDGLVCGRHLAQHGYTPVIYY 300 (453)
T ss_pred EEEEeCCCCccchhHHHHHHHHHcCceeEEEe
Confidence 8888886653 5668899999999866544
No 294
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=39.85 E-value=1.9e+02 Score=22.85 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=20.1
Q ss_pred CCchHHHHHHHHHHCCccceeecccc
Q 032621 88 SGARSLHATADLLGAGFKHVSNFGGG 113 (137)
Q Consensus 88 ~g~ra~~~~~~l~~~G~~~v~~l~GG 113 (137)
+|......+..|...|++ |.++.|.
T Consensus 213 SG~~G~aiA~~l~~~Ga~-V~~v~~~ 237 (399)
T PRK05579 213 SGKMGYALARAAARRGAD-VTLVSGP 237 (399)
T ss_pred cchHHHHHHHHHHHCCCE-EEEeCCC
Confidence 466788899999999996 8877764
No 295
>PRK06721 threonine synthase; Reviewed
Probab=39.81 E-value=76 Score=24.31 Aligned_cols=63 Identities=19% Similarity=0.204 Sum_probs=36.0
Q ss_pred eCccccccCCCCCCCChHHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHHCCccceeeccc
Q 032621 50 FNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGG 112 (137)
Q Consensus 50 inip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~G 112 (137)
+.+-.+.+++.+.+.+.-....+......+...|+.+.+|..+..+++..+.+|++=+.++..
T Consensus 45 i~~K~E~~nptGS~KdR~a~~~i~~a~~~g~~~vV~aSsGN~G~alA~~aa~~G~~~~vvvp~ 107 (352)
T PRK06721 45 LYGKYEGANPTGSFKDRGMVMAVAKAKEEGSEAIICASTGNTSASAAAYAARLGMKCIIVIPE 107 (352)
T ss_pred EEEEecCCCCccchHHHHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHHHHHCCCcEEEEECC
Confidence 555566566655443322222333233344455666678888888888888899873334443
No 296
>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]
Probab=39.52 E-value=1e+02 Score=24.52 Aligned_cols=50 Identities=12% Similarity=0.050 Sum_probs=36.4
Q ss_pred hHHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHHC--CccceeeccccHH
Q 032621 66 PDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGA--GFKHVSNFGGGHM 115 (137)
Q Consensus 66 ~~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~~--G~~~v~~l~GG~~ 115 (137)
.++.+.|.+.++.+-.++++-++|..|-.++..|..+ |--++..+..||.
T Consensus 95 ~~~Ae~L~s~~P~~l~~vfF~nsGsEANelal~mar~Yt~~~diIa~r~~YH 146 (442)
T KOG1404|consen 95 HDLAEALVSKLPGDLKVVFFVNSGSEANELALKMARLYTGNLDIIARRNSYH 146 (442)
T ss_pred HHHHHHHHHhCCCCceEEEEecCCchHHHHHHHHHHHhcCCceEEEeecccc
Confidence 4788888888888888899999999998888877663 3223444554443
No 297
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=39.50 E-value=1e+02 Score=22.88 Aligned_cols=45 Identities=20% Similarity=0.175 Sum_probs=28.4
Q ss_pred HHHHHHHhh-ccCCCcEEEEeCCCchHHHHHHHHHHCCccceeeccc
Q 032621 67 DFLKKVRSL-CKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGG 112 (137)
Q Consensus 67 ~~~~~~~~~-~~~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~G 112 (137)
-|...+.+. ...+++++++ ..|..|..++..|.+.|..+++++.-
T Consensus 109 Gf~~~L~~~~~~~~~~vlil-GaGGaarAi~~aL~~~g~~~i~i~nR 154 (272)
T PRK12550 109 AIAKLLASYQVPPDLVVALR-GSGGMAKAVAAALRDAGFTDGTIVAR 154 (272)
T ss_pred HHHHHHHhcCCCCCCeEEEE-CCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence 355555433 3334455555 45666777777788999988887654
No 298
>PRK06352 threonine synthase; Validated
Probab=39.46 E-value=80 Score=24.20 Aligned_cols=63 Identities=22% Similarity=0.185 Sum_probs=37.3
Q ss_pred eCccccccCCCCCCCChHHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHHCCccceeeccc
Q 032621 50 FNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGG 112 (137)
Q Consensus 50 inip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~G 112 (137)
+.+..+.+++.+.+.+.-....+......+..-|+.+.+|..+..+++..+.+|++-+.++..
T Consensus 45 l~~K~E~~nptGS~KdR~a~~~i~~a~~~g~~~vV~aSsGN~G~AlA~~aa~~G~~~~ivvp~ 107 (351)
T PRK06352 45 LYGKYEGLNPTGSFKDRGMVMAVAKAKEEGAEAVICASTGNTSAAAAAYATRAGLKAYIVIPE 107 (351)
T ss_pred EEEEecCCCCccChHHHHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeC
Confidence 566666666666543322222333333344455666678888888888888999973334433
No 299
>PRK05922 type III secretion system ATPase; Validated
Probab=39.38 E-value=1.3e+02 Score=24.07 Aligned_cols=56 Identities=5% Similarity=0.176 Sum_probs=33.9
Q ss_pred HHHHHHHhhccCCCcEEEEeCCCc----------hHHHHHHHHHHCCccceeeccccHHHHHhCCCc
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSGA----------RSLHATADLLGAGFKHVSNFGGGHMAWVQNGLK 123 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g~----------ra~~~~~~l~~~G~~~v~~l~GG~~~w~~~~~p 123 (137)
+|..+.......++.++++..+.. .+...|.++++.|. +|.++-..+..|.++..+
T Consensus 200 eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~~a~tiAEyfrd~G~-~VLl~~DslTR~A~A~RE 265 (434)
T PRK05922 200 EYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGRAAMTIAEYFRDQGH-RVLFIMDSLSRWIAALQE 265 (434)
T ss_pred HHHHHHHhhccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCC-CEEEeccchhHHHHHHHH
Confidence 344443333334455656555441 25566788999996 588777788888765433
No 300
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=39.38 E-value=67 Score=29.12 Aligned_cols=36 Identities=17% Similarity=0.214 Sum_probs=31.2
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHCCccceeeccccHH
Q 032621 79 EDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM 115 (137)
Q Consensus 79 ~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~~ 115 (137)
+...||||.+-..+...+..|...|+. +..+.||+.
T Consensus 680 ~esgIIYC~SRke~E~LAe~L~~~Gik-a~~YHAGLs 715 (1195)
T PLN03137 680 DECGIIYCLSRMDCEKVAERLQEFGHK-AAFYHGSMD 715 (1195)
T ss_pred CCCceeEeCchhHHHHHHHHHHHCCCC-eeeeeCCCC
Confidence 456789999988999999999999996 888999874
No 301
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=39.34 E-value=92 Score=19.73 Aligned_cols=45 Identities=13% Similarity=0.180 Sum_probs=25.9
Q ss_pred hHHHHHHHhh---ccCCCcEEEEeC--CCchHHHHHHHHHHCCccceeeccc
Q 032621 66 PDFLKKVRSL---CKEEDRLVVGCQ--SGARSLHATADLLGAGFKHVSNFGG 112 (137)
Q Consensus 66 ~~~~~~~~~~---~~~~~~iv~~c~--~g~ra~~~~~~l~~~G~~~v~~l~G 112 (137)
.+|.+++.+. ++.++.+++.++ +|.-...+...+.+ +++++++.|
T Consensus 42 ~~~~~~l~~~i~~~~~~~~vivltDl~GGSp~n~a~~~~~~--~~~~~vIsG 91 (116)
T TIGR00824 42 ETLQEKYNAALADLDTEEEVLFLVDIFGGSPYNAAARIIVD--KPHMDVIAG 91 (116)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHhh--cCCEEEEEe
Confidence 3566665554 456677877777 34444444444433 356777776
No 302
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=39.33 E-value=48 Score=27.14 Aligned_cols=38 Identities=13% Similarity=0.304 Sum_probs=32.5
Q ss_pred cCCCcEEEEeCCCchHHHHHHHHHHCCccceeeccccHH
Q 032621 77 KEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM 115 (137)
Q Consensus 77 ~~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~~ 115 (137)
..+.++||+|.+-..+...+..|+..||. +..+.|...
T Consensus 339 ~~~~KvIIFc~tkr~~~~l~~~l~~~~~~-a~~iHGd~s 376 (519)
T KOG0331|consen 339 DSEGKVIIFCETKRTCDELARNLRRKGWP-AVAIHGDKS 376 (519)
T ss_pred cCCCcEEEEecchhhHHHHHHHHHhcCcc-eeeeccccc
Confidence 34557999999999999999999999986 888888754
No 303
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=39.29 E-value=61 Score=22.53 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=26.1
Q ss_pred cCCCcEEEEeC---CCchHHHHHHHHHHCCccce
Q 032621 77 KEEDRLVVGCQ---SGARSLHATADLLGAGFKHV 107 (137)
Q Consensus 77 ~~~~~iv~~c~---~g~ra~~~~~~l~~~G~~~v 107 (137)
.+++.|+++++ +|.....+...|++.|.+.+
T Consensus 103 ~~G~~VLIVDDIi~TG~Tl~~a~~~l~~~Ga~vv 136 (187)
T TIGR01367 103 KPGEKFVAVEDVVTTGGSLLEAIRAIEGQGGQVV 136 (187)
T ss_pred CCCCEEEEEEeeecchHHHHHHHHHHHHcCCeEE
Confidence 46888999998 78888999999999998644
No 304
>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.
Probab=39.12 E-value=59 Score=25.60 Aligned_cols=52 Identities=10% Similarity=0.066 Sum_probs=32.8
Q ss_pred HHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHHC--------CccceeeccccHHHHH
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGA--------GFKHVSNFGGGHMAWV 118 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~~--------G~~~v~~l~GG~~~w~ 118 (137)
++.+.+.+..+.+-.-+++|.+|..|-.++..+... |-.+|..+.|||.++.
T Consensus 92 ~la~~l~~~~~~~~~~v~f~~sGseA~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t 151 (427)
T TIGR00508 92 ELCQKLVKMTPNALDCVFLADSGSVAVEVALKMALQYWQAKGEKNRQKFLTIRSGYHGDT 151 (427)
T ss_pred HHHHHHHhhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCcc
Confidence 445555554333334678888898877666555432 3456778888888764
No 305
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=39.01 E-value=47 Score=26.58 Aligned_cols=33 Identities=15% Similarity=0.204 Sum_probs=27.2
Q ss_pred CCCcEEEEeC---CCchHHHHHHHHHHCCccceeec
Q 032621 78 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSNF 110 (137)
Q Consensus 78 ~~~~iv~~c~---~g~ra~~~~~~l~~~G~~~v~~l 110 (137)
+++.+||+++ +|..-..++..|++.|..+|+.+
T Consensus 334 ~Gk~vIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~~~ 369 (439)
T PTZ00145 334 YDSDVIIVDDMIDTSGTLCEAAKQLKKHGARRVFAF 369 (439)
T ss_pred CCCEEEEEcceeCcHHHHHHHHHHHHHcCCCEEEEE
Confidence 4567888877 78888999999999999988743
No 306
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=38.97 E-value=1.2e+02 Score=22.42 Aligned_cols=64 Identities=16% Similarity=0.146 Sum_probs=35.9
Q ss_pred eCccccccCCCCCCCChHHHHHHHhhccCCC----cEEEEeCCCchHHHHHHHHHHCCccceeecccc
Q 032621 50 FNIPYMFNTPEGRVKNPDFLKKVRSLCKEED----RLVVGCQSGARSLHATADLLGAGFKHVSNFGGG 113 (137)
Q Consensus 50 inip~~~~~~~~~~~~~~~~~~~~~~~~~~~----~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG 113 (137)
+.+-.+.+.|.+.+...-....+......+. ..|+-+.+|..+..+++..+.+|++-+.++..+
T Consensus 24 i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~i~vp~~ 91 (299)
T TIGR01136 24 VLAKLEGRNPSGSVKDRIALSMIEDAEKRGLLKPGDTIIEATSGNTGIALAMVAAAKGYKLILTMPET 91 (299)
T ss_pred EEEEEcccCCCCCccHHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHHHHHHcCCcEEEEECCC
Confidence 5566666666665543322222322222222 345556678888888888888998733344433
No 307
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=38.95 E-value=1.1e+02 Score=20.49 Aligned_cols=36 Identities=19% Similarity=0.181 Sum_probs=27.0
Q ss_pred ccCCCcEEEEeCCCc---hHHHHHHHHHHCCccceeeccc
Q 032621 76 CKEEDRLVVGCQSGA---RSLHATADLLGAGFKHVSNFGG 112 (137)
Q Consensus 76 ~~~~~~iv~~c~~g~---ra~~~~~~l~~~G~~~v~~l~G 112 (137)
+...++|.++..+.. .|..+..+|.+.||+ |.=+.-
T Consensus 13 L~~~K~IAvVG~S~~P~r~sy~V~kyL~~~GY~-ViPVNP 51 (140)
T COG1832 13 LKSAKTIAVVGASDKPDRPSYRVAKYLQQKGYR-VIPVNP 51 (140)
T ss_pred HHhCceEEEEecCCCCCccHHHHHHHHHHCCCE-EEeeCc
Confidence 346788888877643 589999999999997 664443
No 308
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=38.87 E-value=94 Score=24.41 Aligned_cols=57 Identities=11% Similarity=-0.005 Sum_probs=34.2
Q ss_pred cCCCCCCCChHHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHHCCccceeecccc
Q 032621 57 NTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGG 113 (137)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG 113 (137)
+++.+.+.+.-....+......+...|+.+.+|+.+..+|+..+..|++-+.++..+
T Consensus 94 ~npTGSFKdRga~~~i~~a~~~g~~~Vv~aSsGN~g~alA~~aa~~Gi~~~I~vP~~ 150 (398)
T TIGR03844 94 FMRTCSFKELEALPTMQRLKERGGKTLVVASAGNTGRAFAEVSAITGQPVILVVPKS 150 (398)
T ss_pred cCCccccHHHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCC
Confidence 455555543222333333333445667777789999888988888998744445444
No 309
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=38.65 E-value=53 Score=25.76 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=26.6
Q ss_pred CCCcEEEEeC---CCchHHHHHHHHHHCCccceee
Q 032621 78 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSN 109 (137)
Q Consensus 78 ~~~~iv~~c~---~g~ra~~~~~~l~~~G~~~v~~ 109 (137)
+++.++++++ +|..-..++..|++.|..+|+.
T Consensus 263 ~gr~vIIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~ 297 (382)
T PRK06827 263 EGKDVLIVDDMIASGGSMIDAAKELKSRGAKKIIV 297 (382)
T ss_pred CCCEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEE
Confidence 4567888877 7888999999999999988764
No 310
>COG1204 Superfamily II helicase [General function prediction only]
Probab=38.45 E-value=1.2e+02 Score=26.09 Aligned_cols=84 Identities=13% Similarity=-0.069 Sum_probs=51.0
Q ss_pred CHHHHHHHhhCCCEEEecCChHHHhccCCCCceeeCccccccCCCCCCCChHHHHHHHhhccCCCcEEEEeCCCchHHHH
Q 032621 16 DVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHA 95 (137)
Q Consensus 16 s~~~~~~~~~~~~~viDvR~~~e~~~g~ipga~~inip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~ra~~~ 95 (137)
++.++.++++.....-|.|+..-+..-...++ +.....................+...+..+..++++|.+-..+...
T Consensus 192 N~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~--~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~ 269 (766)
T COG1204 192 NAEEVADWLNAKLVESDWRPVPLRRGVPYVGA--FLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKT 269 (766)
T ss_pred CHHHHHHHhCCcccccCCCCcccccCCccceE--EEEecCccccccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHH
Confidence 46788888877655778888777765555444 2211110000011122334444444467888999999998888888
Q ss_pred HHHHHH
Q 032621 96 TADLLG 101 (137)
Q Consensus 96 ~~~l~~ 101 (137)
|..|..
T Consensus 270 A~~l~~ 275 (766)
T COG1204 270 AKKLRI 275 (766)
T ss_pred HHHHHH
Confidence 888773
No 311
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=38.37 E-value=48 Score=25.40 Aligned_cols=34 Identities=15% Similarity=0.111 Sum_probs=27.3
Q ss_pred CCCcEEEEeC---CCchHHHHHHHHHHCCccceeecc
Q 032621 78 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSNFG 111 (137)
Q Consensus 78 ~~~~iv~~c~---~g~ra~~~~~~l~~~G~~~v~~l~ 111 (137)
+++.++++++ +|.....++..|++.|..+|+...
T Consensus 229 ~g~~viiVDDii~TG~T~~~a~~~L~~~Ga~~v~~~~ 265 (330)
T PRK02812 229 KGKTAILVDDMIDTGGTICEGARLLRKEGAKQVYACA 265 (330)
T ss_pred CCCEEEEEccccCcHHHHHHHHHHHhccCCCeEEEEE
Confidence 4567888877 688888999999999998877544
No 312
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=38.26 E-value=56 Score=23.63 Aligned_cols=6 Identities=17% Similarity=0.097 Sum_probs=3.0
Q ss_pred HHCCcc
Q 032621 100 LGAGFK 105 (137)
Q Consensus 100 ~~~G~~ 105 (137)
+.+|.+
T Consensus 52 k~lgv~ 57 (222)
T COG0603 52 KKLGVP 57 (222)
T ss_pred HHcCCC
Confidence 345554
No 313
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=38.24 E-value=53 Score=26.80 Aligned_cols=35 Identities=26% Similarity=0.095 Sum_probs=29.5
Q ss_pred CCCcEEEEeC---CCchHHHHHHHHHHCCccceeeccc
Q 032621 78 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSNFGG 112 (137)
Q Consensus 78 ~~~~iv~~c~---~g~ra~~~~~~l~~~G~~~v~~l~G 112 (137)
+++.|+++++ +|.....+++.|++.|.+.|.+.-+
T Consensus 366 ~gk~vllVDD~ittG~T~~~~~~~L~~~ga~~v~~ri~ 403 (510)
T PRK07847 366 RGKRLVVVDDSIVRGNTQRALVRMLREAGAAEVHVRIS 403 (510)
T ss_pred CCCEEEEEecccCchHHHHHHHHHHHHcCCCEEEEEEC
Confidence 6788999998 5888999999999999988876554
No 314
>KOG4053 consensus Ataxin-1, involved in Ca2+ homeostasis [Function unknown]
Probab=38.23 E-value=17 Score=25.69 Aligned_cols=83 Identities=14% Similarity=-0.000 Sum_probs=50.5
Q ss_pred CceeeeCHHHHHHHhhC-CCEEEecCChHHHhccCCCCceeeCccccccCCCCCCCChHHHHHHHhhccCCCcEEEEeCC
Q 032621 10 AEVITVDVRAAKNLLES-GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQS 88 (137)
Q Consensus 10 ~~~~~is~~~~~~~~~~-~~~viDvR~~~e~~~g~ipga~~inip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~ 88 (137)
.++..++.+++.+-... +.+.||..+-...+..|.||.+.+.+.+. .-.+++.-.+..+-++.+|. .
T Consensus 50 kkVEDl~TeDFirsA~~S~~lkidsstVvrI~~S~~pg~vti~F~~g-----------~h~akv~levq~ehPfFVyG-q 117 (224)
T KOG4053|consen 50 KKVEDLSTEDFIRSAEESDDLKIDSSTVVRIKSSGCPGSVTIIFEVG-----------EHKAKVSLEVQVEHPFFVYG-Q 117 (224)
T ss_pred eehhhcchHHHHHHHHhcCCeEeecceEEEeeccCCCceEEEEEEec-----------cccccceeeccCCCceEEec-c
Confidence 45567888888876543 57778877777777889999944443332 12222222255777888875 4
Q ss_pred CchHHHHHHHHHHCCc
Q 032621 89 GARSLHATADLLGAGF 104 (137)
Q Consensus 89 g~ra~~~~~~l~~~G~ 104 (137)
||.|..-.+....+|.
T Consensus 118 GWsSC~P~rs~qly~L 133 (224)
T KOG4053|consen 118 GWSSCNPRRSGQLYGL 133 (224)
T ss_pred cccccCccccccccCC
Confidence 6665544444444444
No 315
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=38.13 E-value=27 Score=27.02 Aligned_cols=30 Identities=13% Similarity=0.258 Sum_probs=25.0
Q ss_pred CcEEEEeCCCchHHHHHHHHHHCCccceeec
Q 032621 80 DRLVVGCQSGARSLHATADLLGAGFKHVSNF 110 (137)
Q Consensus 80 ~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l 110 (137)
..-|++|++-.|-...|....++||. +++.
T Consensus 323 NQsIIFCNS~~rVELLAkKITelGys-cyyi 352 (459)
T KOG0326|consen 323 NQSIIFCNSTNRVELLAKKITELGYS-CYYI 352 (459)
T ss_pred cceEEEeccchHhHHHHHHHHhccch-hhHH
Confidence 34689999999999999999999996 4443
No 316
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=38.04 E-value=1.1e+02 Score=21.23 Aligned_cols=50 Identities=18% Similarity=0.242 Sum_probs=34.0
Q ss_pred ccCCCcEEEEeC---CCchHHHHHHHHHHCCccce---eecc----ccHHHHH-hCCCcee
Q 032621 76 CKEEDRLVVGCQ---SGARSLHATADLLGAGFKHV---SNFG----GGHMAWV-QNGLKVK 125 (137)
Q Consensus 76 ~~~~~~iv~~c~---~g~ra~~~~~~l~~~G~~~v---~~l~----GG~~~w~-~~~~p~~ 125 (137)
+.++++++++++ +|.....+...+++.|-+-+ .+++ ||..... ..+.|+.
T Consensus 111 ~~~G~rVlIVDDvitTG~T~~~ai~ll~~aGa~vv~v~~vvd~~~~~g~~~l~~~~gv~v~ 171 (187)
T PRK12560 111 IEKGDRVAIIDDTLSTGGTVIALIKAIENSGGIVSDVICVIEKTQNNGRKKLFTQTGINVK 171 (187)
T ss_pred CCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEEecccchHHHHhhccCCcEE
Confidence 457889999998 68888888899999997532 2232 4555552 2455553
No 317
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=38.01 E-value=67 Score=24.98 Aligned_cols=27 Identities=26% Similarity=0.439 Sum_probs=15.5
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHCCcc
Q 032621 79 EDRLVVGCQSGARSLHATADLLGAGFK 105 (137)
Q Consensus 79 ~~~iv~~c~~g~ra~~~~~~l~~~G~~ 105 (137)
.++|++...+|.-|..++..|++.|++
T Consensus 5 ~~kVlVa~SGGvDSsv~a~lL~~~G~e 31 (362)
T PRK14664 5 KKRVLVGMSGGIDSTATCLMLQEQGYE 31 (362)
T ss_pred CCEEEEEEeCCHHHHHHHHHHHHcCCc
Confidence 345555555566666666666666654
No 318
>cd06269 PBP1_glutamate_receptors_like Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors. This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type I family. The family C GPCRs consist of metabotropic glutamate receptor (mGluR) receptors, a calcium-sensing receptor (CaSR), gamma-aminobutyric receptors (GABAb), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing va
Probab=37.77 E-value=1e+02 Score=21.68 Aligned_cols=38 Identities=18% Similarity=0.289 Sum_probs=27.7
Q ss_pred HHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHHCCc
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGF 104 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~~G~ 104 (137)
++...+..+......||+.|..+..+..+...+.+.|.
T Consensus 183 ~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~~~g~ 220 (298)
T cd06269 183 DIRRLLKELKSSTARVIVVFSSEEDALRLLEEAVELGM 220 (298)
T ss_pred HHHHHHHHHHhcCCcEEEEEechHHHHHHHHHHHHcCC
Confidence 45555555533444889999888888888888888887
No 319
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=37.62 E-value=55 Score=24.65 Aligned_cols=33 Identities=27% Similarity=0.231 Sum_probs=26.5
Q ss_pred CCCcEEEEeC---CCchHHHHHHHHHHCCccceeec
Q 032621 78 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSNF 110 (137)
Q Consensus 78 ~~~~iv~~c~---~g~ra~~~~~~l~~~G~~~v~~l 110 (137)
+++.++++++ +|.....++..|++.|.++|+.+
T Consensus 209 ~g~~vliVDDii~tG~Tl~~a~~~l~~~ga~~v~~~ 244 (308)
T TIGR01251 209 EGKDVVIVDDIIDTGGTIAKAAEILKSAGAKRVIAA 244 (308)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHHHhcCCCEEEEE
Confidence 5667888877 67888889999999999887643
No 320
>PTZ00424 helicase 45; Provisional
Probab=37.58 E-value=58 Score=24.94 Aligned_cols=37 Identities=16% Similarity=0.198 Sum_probs=30.5
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHHCCccceeeccccHH
Q 032621 78 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM 115 (137)
Q Consensus 78 ~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~~ 115 (137)
....++++|++-..+...+..|...|+. +..+.|++.
T Consensus 266 ~~~~~ivF~~t~~~~~~l~~~l~~~~~~-~~~~h~~~~ 302 (401)
T PTZ00424 266 TITQAIIYCNTRRKVDYLTKKMHERDFT-VSCMHGDMD 302 (401)
T ss_pred CCCeEEEEecCcHHHHHHHHHHHHCCCc-EEEEeCCCC
Confidence 3456889999888889999999999985 888888864
No 321
>PLN02335 anthranilate synthase
Probab=37.54 E-value=79 Score=22.56 Aligned_cols=33 Identities=6% Similarity=0.035 Sum_probs=26.2
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHHCCccceeecc
Q 032621 78 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFG 111 (137)
Q Consensus 78 ~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~ 111 (137)
..++|+++++.+......+.+|++.|++ +.++.
T Consensus 17 ~~~~ilviD~~dsft~~i~~~L~~~g~~-~~v~~ 49 (222)
T PLN02335 17 QNGPIIVIDNYDSFTYNLCQYMGELGCH-FEVYR 49 (222)
T ss_pred ccCcEEEEECCCCHHHHHHHHHHHCCCc-EEEEE
Confidence 4567899988888888899999999986 55554
No 322
>PLN00011 cysteine synthase
Probab=37.44 E-value=1.3e+02 Score=22.66 Aligned_cols=65 Identities=9% Similarity=0.084 Sum_probs=39.7
Q ss_pred eCccccccCCCCCCCChHHHHHHHhhcc-----CCCcEEEEeCCCchHHHHHHHHHHCCccceeeccccH
Q 032621 50 FNIPYMFNTPEGRVKNPDFLKKVRSLCK-----EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGH 114 (137)
Q Consensus 50 inip~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~ 114 (137)
+.+-.+.++|.+.....-....+..... ++..-|+-+.+|..+..+++..+.+|++-..++..+.
T Consensus 34 i~~K~E~~nPtGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~ 103 (323)
T PLN00011 34 IAAKLEMMEPCSSVKDRIAYSMIKDAEDKGLITPGKSTLIEATAGNTGIGLACIGAARGYKVILVMPSTM 103 (323)
T ss_pred EEEEecccCCccccchHHHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 6677777777776654433333333322 2333444567788888899999999997333455443
No 323
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=37.42 E-value=54 Score=26.58 Aligned_cols=35 Identities=26% Similarity=0.148 Sum_probs=29.2
Q ss_pred CCCcEEEEeC---CCchHHHHHHHHHHCCccceeeccc
Q 032621 78 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSNFGG 112 (137)
Q Consensus 78 ~~~~iv~~c~---~g~ra~~~~~~l~~~G~~~v~~l~G 112 (137)
+++.|+++++ +|.....+++.|++.|.+.|.++-.
T Consensus 349 ~gk~vllVDDvittG~T~~~~~~~L~~~Ga~~v~~~~~ 386 (484)
T PRK07272 349 KGKRVVMVDDSIVRGTTSRRIVQLLKEAGAKEVHVAIA 386 (484)
T ss_pred CCCEEEEEccccCchHHHHHHHHHHHhcCCcEEEEEEe
Confidence 4788999998 5888899999999999988776544
No 324
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Probab=37.38 E-value=63 Score=25.34 Aligned_cols=53 Identities=17% Similarity=0.273 Sum_probs=33.6
Q ss_pred HHHHHHHhhc-cC--C-CcEEEEeCCCchHHHHHHHHHH--CCccceeeccccHHHHHh
Q 032621 67 DFLKKVRSLC-KE--E-DRLVVGCQSGARSLHATADLLG--AGFKHVSNFGGGHMAWVQ 119 (137)
Q Consensus 67 ~~~~~~~~~~-~~--~-~~iv~~c~~g~ra~~~~~~l~~--~G~~~v~~l~GG~~~w~~ 119 (137)
++.+++.+.+ .+ . ..++++|++|..|-.+|-.|.. -|-++|..+.|||.+|..
T Consensus 86 ~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~ 144 (425)
T PRK09264 86 EFLETFEETILKPRGLDYKVQFTGPTGTNAVEAALKLARKVTGRTNIVAFTNGFHGMTL 144 (425)
T ss_pred HHHHHHHHhhcCCcCCCceEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEECCccCCccH
Confidence 4555555532 12 1 2456667899988877776654 355567788888887754
No 325
>PLN02760 4-aminobutyrate:pyruvate transaminase
Probab=36.96 E-value=76 Score=25.75 Aligned_cols=55 Identities=15% Similarity=0.047 Sum_probs=35.1
Q ss_pred HHHHHHHhhc-cCCCcEEEEeCCCchHHHHHHHHHH-----CCc---cceeeccccHHHHHhCC
Q 032621 67 DFLKKVRSLC-KEEDRLVVGCQSGARSLHATADLLG-----AGF---KHVSNFGGGHMAWVQNG 121 (137)
Q Consensus 67 ~~~~~~~~~~-~~~~~iv~~c~~g~ra~~~~~~l~~-----~G~---~~v~~l~GG~~~w~~~~ 121 (137)
++.+.+.+.+ +.+..-+++|++|..|-.+|-.+.. .|. ++|..++++|.+|...+
T Consensus 137 ~lae~L~~~~~~~~~~~v~f~~SGsEA~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a 200 (504)
T PLN02760 137 DLAKELLEMFTARKMGKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLIS 200 (504)
T ss_pred HHHHHHHhhcCCCCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhh
Confidence 4555555542 2333468888999888777665543 253 45778899888876533
No 326
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=36.94 E-value=57 Score=25.00 Aligned_cols=32 Identities=22% Similarity=0.230 Sum_probs=26.8
Q ss_pred CCCcEEEEeC---CCchHHHHHHHHHHCCccceee
Q 032621 78 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSN 109 (137)
Q Consensus 78 ~~~~iv~~c~---~g~ra~~~~~~l~~~G~~~v~~ 109 (137)
+++.++++++ +|..-..++..|++.|...|+.
T Consensus 229 ~gr~vlIVDDIidTG~Tl~~aa~~L~~~Ga~~V~~ 263 (326)
T PLN02297 229 AGRHVVIVDDLVQSGGTLIECQKVLAAHGAAKVSA 263 (326)
T ss_pred CCCeEEEEecccCcHHHHHHHHHHHHHCCCcEEEE
Confidence 5677888887 7888899999999999988764
No 327
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=36.67 E-value=93 Score=23.97 Aligned_cols=62 Identities=11% Similarity=0.058 Sum_probs=35.6
Q ss_pred eCccccccCCCCCCCChHHHHHHHhhccCCC-cEEEEeCCCchHHHHHHHHHHCCccceeecc
Q 032621 50 FNIPYMFNTPEGRVKNPDFLKKVRSLCKEED-RLVVGCQSGARSLHATADLLGAGFKHVSNFG 111 (137)
Q Consensus 50 inip~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~ 111 (137)
+.+-.+.+++.+..........+......+. .+++.|.+|..+..+|...+.+|++-+.++.
T Consensus 52 l~~K~E~~nptgS~K~R~a~~~~~~a~~~g~~~vv~~~ssGN~g~alA~~a~~~G~~~~ivvp 114 (365)
T cd06446 52 IYLKREDLNHTGAHKINNALGQALLAKRMGKKRVIAETGAGQHGVATATACALFGLECEIYMG 114 (365)
T ss_pred EEEEeccCCCccchhHHHHHHHHHHHHHcCCCeEEEecCchHHHHHHHHHHHHhCCCeEEEEc
Confidence 6666666666665433323333322222333 3444467788888888888999997333443
No 328
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=36.66 E-value=1.2e+02 Score=22.67 Aligned_cols=33 Identities=18% Similarity=0.162 Sum_probs=25.5
Q ss_pred cEEEEeCCCchHHHHHHHHHHCCccceeecccc
Q 032621 81 RLVVGCQSGARSLHATADLLGAGFKHVSNFGGG 113 (137)
Q Consensus 81 ~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG 113 (137)
.-++++..|.-|..++..|.+.|..+++++.--
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt 159 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRT 159 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 345555677888888999999999888887653
No 329
>PRK07591 threonine synthase; Validated
Probab=36.62 E-value=94 Score=24.54 Aligned_cols=56 Identities=14% Similarity=0.035 Sum_probs=31.0
Q ss_pred eCccccccCCCCCCCChHHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHHCCcc
Q 032621 50 FNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFK 105 (137)
Q Consensus 50 inip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~~G~~ 105 (137)
+.+-.+.++|.+.+.+.-....+......+...|+.+.+|..+..+|...+..|++
T Consensus 107 l~~K~E~~nPtGSfKdRga~~~v~~A~~~g~~~vv~aSsGN~g~alA~~aa~~Gl~ 162 (421)
T PRK07591 107 LYIKDDSVNPTHSFKDRVVSVALTAARELGFTTVACASTGNLANSVAAHAARAGLD 162 (421)
T ss_pred EEEEeCCCCCccChHHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHcCCC
Confidence 44455555555544322111122222233444555566788888888888888886
No 330
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=36.59 E-value=33 Score=24.61 Aligned_cols=41 Identities=20% Similarity=0.341 Sum_probs=25.5
Q ss_pred ChHHHhccCCCCceeeCc-cccccCCCCCCCChHHHHHHHhh
Q 032621 35 TAEEFKEGHVDAAKIFNI-PYMFNTPEGRVKNPDFLKKVRSL 75 (137)
Q Consensus 35 ~~~e~~~g~ipga~~ini-p~~~~~~~~~~~~~~~~~~~~~~ 75 (137)
+..+.+.-.-|||.++|+ |+..+..+..++..+....+..+
T Consensus 36 s~~qIeRllrpgstyfnLNpfeVLqIdpev~~edikkryRkl 77 (250)
T KOG1150|consen 36 SKQQIERLLRPGSTYFNLNPFEVLQIDPEVTDEDIKKRYRKL 77 (250)
T ss_pred cHHHHHHHhcCCccccccChHHHHhcCCCCCHHHHHHHHHhh
Confidence 344555566789988887 66666555555555555555444
No 331
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=35.97 E-value=57 Score=24.65 Aligned_cols=33 Identities=18% Similarity=0.165 Sum_probs=26.9
Q ss_pred CCCcEEEEeC---CCchHHHHHHHHHHCCccceeec
Q 032621 78 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSNF 110 (137)
Q Consensus 78 ~~~~iv~~c~---~g~ra~~~~~~l~~~G~~~v~~l 110 (137)
+++.++++++ +|.....++..|++.|..+|+.+
T Consensus 207 ~g~~vliVDDii~TG~T~~~a~~~l~~~Ga~~v~~~ 242 (309)
T PRK01259 207 EGRDCILVDDMIDTAGTLCKAAEALKERGAKSVYAY 242 (309)
T ss_pred CCCEEEEEecccCcHHHHHHHHHHHHccCCCEEEEE
Confidence 5677888887 78888899999999999877643
No 332
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=35.94 E-value=1.1e+02 Score=22.89 Aligned_cols=29 Identities=3% Similarity=-0.200 Sum_probs=20.5
Q ss_pred HHHHHHHHHHCCccceeeccccHHHHHhCC
Q 032621 92 SLHATADLLGAGFKHVSNFGGGHMAWVQNG 121 (137)
Q Consensus 92 a~~~~~~l~~~G~~~v~~l~GG~~~w~~~~ 121 (137)
+...|+++...|.+ |.++-..+..|.+..
T Consensus 149 a~aiAE~fr~~G~~-Vlvl~DslTr~A~A~ 177 (274)
T cd01132 149 GCAMGEYFMDNGKH-ALIIYDDLSKQAVAY 177 (274)
T ss_pred HHHHHHHHHHCCCC-EEEEEcChHHHHHHH
Confidence 56667888889975 776666777775543
No 333
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=35.89 E-value=1.4e+02 Score=21.91 Aligned_cols=64 Identities=16% Similarity=0.161 Sum_probs=36.3
Q ss_pred eCccccccCCCCCCCChHHHHHHHhhccCCC----cEEEEeCCCchHHHHHHHHHHCCccceeecccc
Q 032621 50 FNIPYMFNTPEGRVKNPDFLKKVRSLCKEED----RLVVGCQSGARSLHATADLLGAGFKHVSNFGGG 113 (137)
Q Consensus 50 inip~~~~~~~~~~~~~~~~~~~~~~~~~~~----~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG 113 (137)
+.+-.+.+.+.+.+........+......+. ..|+.+.+|..+..+|+..+.+|++=+.++..+
T Consensus 19 i~~K~E~~~ptgS~K~R~a~~~l~~a~~~g~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~i~vp~~ 86 (291)
T cd01561 19 IYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPGTTIIEPTSGNTGIGLAMVAAAKGYRFIIVMPET 86 (291)
T ss_pred EEEEecccCCCCcchHHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHHHHHHcCCeEEEEECCC
Confidence 5555555566555443332333333322222 445556778888888989999998733344443
No 334
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=35.76 E-value=1e+02 Score=24.62 Aligned_cols=45 Identities=11% Similarity=0.158 Sum_probs=30.4
Q ss_pred CCcEEEEeCCCch-----------HHHHHHHHHHCCccceeeccccHHHHHhCCCce
Q 032621 79 EDRLVVGCQSGAR-----------SLHATADLLGAGFKHVSNFGGGHMAWVQNGLKV 124 (137)
Q Consensus 79 ~~~iv~~c~~g~r-----------a~~~~~~l~~~G~~~v~~l~GG~~~w~~~~~p~ 124 (137)
-+.++++|+++.. +...|.+++..|.+ |.++-..+..|.++..++
T Consensus 209 ~~rtv~vv~tsd~p~~~r~~a~~~a~tiAEyfrd~G~~-VLl~~Dsltr~A~A~REi 264 (433)
T PRK07594 209 RKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR-VVLLADSLTRYARAAREI 264 (433)
T ss_pred cceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCc-EEEEEeCHHHHHHHHHHH
Confidence 3556666665432 55678889999985 877766888887665433
No 335
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=35.53 E-value=75 Score=22.91 Aligned_cols=33 Identities=18% Similarity=0.141 Sum_probs=26.0
Q ss_pred CCCcEEEEeC---CCchHHHHHHHHHHCCccceeec
Q 032621 78 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSNF 110 (137)
Q Consensus 78 ~~~~iv~~c~---~g~ra~~~~~~l~~~G~~~v~~l 110 (137)
+++.++++++ +|.+...+.+.+++.|-+++++.
T Consensus 123 ~g~~VIlVDDGiATGatm~aAi~~~r~~~~~~IviA 158 (220)
T COG1926 123 KGRTVILVDDGIATGATMKAAVRALRAKGPKEIVIA 158 (220)
T ss_pred CCCEEEEEeCCcchhHHHHHHHHHHHhcCCceEEEE
Confidence 4567888887 47788888889999998887754
No 336
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=35.37 E-value=86 Score=22.10 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=24.5
Q ss_pred CCCcEEEEeC---CCchHHHHHHHHHHCCc--cceee
Q 032621 78 EEDRLVVGCQ---SGARSLHATADLLGAGF--KHVSN 109 (137)
Q Consensus 78 ~~~~iv~~c~---~g~ra~~~~~~l~~~G~--~~v~~ 109 (137)
.++.+++++. +|..+..+...|++.|+ +++.+
T Consensus 120 ~~~~VillDpmlaTG~s~~~ai~~L~~~G~~~~~I~~ 156 (207)
T PF14681_consen 120 ENRKVILLDPMLATGGSAIAAIEILKEHGVPEENIII 156 (207)
T ss_dssp TTSEEEEEESEESSSHHHHHHHHHHHHTTG-GGEEEE
T ss_pred cCCEEEEEeccccchhhHHHHHHHHHHcCCCcceEEE
Confidence 4466777755 89999999999999998 45543
No 337
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=35.30 E-value=73 Score=24.80 Aligned_cols=28 Identities=29% Similarity=0.396 Sum_probs=22.2
Q ss_pred CcEEEEeCCCchHHHHHHHHHHCCcccee
Q 032621 80 DRLVVGCQSGARSLHATADLLGAGFKHVS 108 (137)
Q Consensus 80 ~~iv~~c~~g~ra~~~~~~l~~~G~~~v~ 108 (137)
.+|++--.+|.-|+.+|..|++.||+ |.
T Consensus 4 ~kV~v~mSGGVDSSVaA~lLk~QGye-Vi 31 (356)
T COG0482 4 KKVLVGMSGGVDSSVAAYLLKEQGYE-VI 31 (356)
T ss_pred cEEEEEccCCHHHHHHHHHHHHcCCe-EE
Confidence 45666666788999999999999997 54
No 338
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=35.24 E-value=27 Score=21.73 Aligned_cols=26 Identities=19% Similarity=0.166 Sum_probs=20.1
Q ss_pred CceeeeCHHHHHHHhhCCCEEEecCC
Q 032621 10 AEVITVDVRAAKNLLESGYGYLDVRT 35 (137)
Q Consensus 10 ~~~~~is~~~~~~~~~~~~~viDvR~ 35 (137)
+.+..++.+++.+.+..+.+|||.|.
T Consensus 77 ~~f~~l~~~~~~~~~~~~~~iiD~~~ 102 (106)
T PF03720_consen 77 DEFRELDWEEIAKLMRKPPVIIDGRN 102 (106)
T ss_dssp GGGGCCGHHHHHHHSCSSEEEEESSS
T ss_pred HHHhccCHHHHHHhcCCCCEEEECcc
Confidence 34556788888888866789999986
No 339
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=35.24 E-value=98 Score=25.94 Aligned_cols=36 Identities=14% Similarity=0.279 Sum_probs=30.3
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHHCCccceeeccccH
Q 032621 78 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGH 114 (137)
Q Consensus 78 ~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~ 114 (137)
....++++|++-..+..++..|...||. +..+.|.+
T Consensus 244 ~~~~~IVF~~tk~~a~~l~~~L~~~g~~-~~~lhgd~ 279 (629)
T PRK11634 244 DFDAAIIFVRTKNATLEVAEALERNGYN-SAALNGDM 279 (629)
T ss_pred CCCCEEEEeccHHHHHHHHHHHHhCCCC-EEEeeCCC
Confidence 3456899999988899999999999996 88888864
No 340
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase. Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.
Probab=35.11 E-value=86 Score=24.52 Aligned_cols=39 Identities=13% Similarity=0.227 Sum_probs=28.4
Q ss_pred cEEEEeCCCchHHHHHHHHHH--CCccceeeccccHHHHHh
Q 032621 81 RLVVGCQSGARSLHATADLLG--AGFKHVSNFGGGHMAWVQ 119 (137)
Q Consensus 81 ~iv~~c~~g~ra~~~~~~l~~--~G~~~v~~l~GG~~~w~~ 119 (137)
.++++|++|..|-.+|-.+.. .|-++|..+.+||.+|..
T Consensus 100 ~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~ 140 (412)
T TIGR02407 100 KVQFPGPTGTNAVESALKLARKVTGRSNVVSFTNAFHGMTL 140 (412)
T ss_pred eEEEeCCCchHHHHHHHHHHhhhcCCCeEEEECCCcCCchH
Confidence 466777999988887777655 355567788888877653
No 341
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=35.07 E-value=1.6e+02 Score=20.55 Aligned_cols=38 Identities=13% Similarity=0.133 Sum_probs=25.7
Q ss_pred hHHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHHCCcc
Q 032621 66 PDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFK 105 (137)
Q Consensus 66 ~~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~~G~~ 105 (137)
++..+++.++-.++-.++++.+ .+..+++.++..+|++
T Consensus 49 pe~~~W~~e~k~~gi~v~vvSN--n~e~RV~~~~~~l~v~ 86 (175)
T COG2179 49 PELRAWLAELKEAGIKVVVVSN--NKESRVARAAEKLGVP 86 (175)
T ss_pred HHHHHHHHHHHhcCCEEEEEeC--CCHHHHHhhhhhcCCc
Confidence 5677777777556667777766 4556666666667765
No 342
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=34.96 E-value=90 Score=17.88 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=12.5
Q ss_pred CCCchHHHHHHHHHHCCccceeec
Q 032621 87 QSGARSLHATADLLGAGFKHVSNF 110 (137)
Q Consensus 87 ~~g~ra~~~~~~l~~~G~~~v~~l 110 (137)
.+|.-+..+|..|...|.+ |.++
T Consensus 6 GgG~ig~E~A~~l~~~g~~-vtli 28 (80)
T PF00070_consen 6 GGGFIGIELAEALAELGKE-VTLI 28 (80)
T ss_dssp SSSHHHHHHHHHHHHTTSE-EEEE
T ss_pred CcCHHHHHHHHHHHHhCcE-EEEE
Confidence 4455566666666666643 4443
No 343
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=34.74 E-value=1.4e+02 Score=22.29 Aligned_cols=44 Identities=16% Similarity=0.209 Sum_probs=26.7
Q ss_pred HHHHHHhh-cc-CCCcEEEEeCCCchHHHHHHHHHHCCccceeeccc
Q 032621 68 FLKKVRSL-CK-EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGG 112 (137)
Q Consensus 68 ~~~~~~~~-~~-~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~G 112 (137)
|...+... ++ .++.++++.. |..+..++..|...|..+++++.-
T Consensus 111 f~~~l~~~~~~~~~k~vlvlGa-GGaarAi~~~l~~~g~~~i~i~nR 156 (288)
T PRK12749 111 HIRAIKESGFDIKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNR 156 (288)
T ss_pred HHHHHHhcCCCcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeC
Confidence 44455432 22 3455666654 444666777788899988887743
No 344
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=34.34 E-value=1.3e+02 Score=21.82 Aligned_cols=38 Identities=26% Similarity=0.498 Sum_probs=25.4
Q ss_pred HHHHHHHhhccCCCcEEEEeCCCc-h--HHHHHHHHHHCCcc
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSGA-R--SLHATADLLGAGFK 105 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g~-r--a~~~~~~l~~~G~~ 105 (137)
+|.+.+... .+...|.+.|..|. | ..++++.++..|+.
T Consensus 136 ~fv~i~e~~-~~~g~iaVHCkaGlGRTG~liAc~lmy~~g~t 176 (225)
T KOG1720|consen 136 EFVKIVENA-EKGGKIAVHCKAGLGRTGTLIACYLMYEYGMT 176 (225)
T ss_pred HHHHHHHHH-HhcCeEEEEeccCCCchhHHHHHHHHHHhCCC
Confidence 455544444 34788999999875 4 45666777778875
No 345
>PRK08264 short chain dehydrogenase; Validated
Probab=34.17 E-value=83 Score=21.87 Aligned_cols=34 Identities=15% Similarity=0.063 Sum_probs=24.1
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHCCccceeeccc
Q 032621 79 EDRLVVGCQSGARSLHATADLLGAGFKHVSNFGG 112 (137)
Q Consensus 79 ~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~G 112 (137)
++.++|...+|.-....+..|.+.|+++|..+.-
T Consensus 6 ~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r 39 (238)
T PRK08264 6 GKVVLVTGANRGIGRAFVEQLLARGAAKVYAAAR 39 (238)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCcccEEEEec
Confidence 4567777667777778888888888855765543
No 346
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=34.17 E-value=1.5e+02 Score=20.11 Aligned_cols=30 Identities=30% Similarity=0.339 Sum_probs=18.4
Q ss_pred HHHHHHHhh-c-cCCCcEEEEeCCCchHHHHH
Q 032621 67 DFLKKVRSL-C-KEEDRLVVGCQSGARSLHAT 96 (137)
Q Consensus 67 ~~~~~~~~~-~-~~~~~iv~~c~~g~ra~~~~ 96 (137)
++...+... . ...+.-|+.|.+|.-...++
T Consensus 45 ~~a~~va~~v~~~~~d~GIliCGTGiG~~iaA 76 (151)
T COG0698 45 DYAKKVAEAVLNGEADLGILICGTGIGMSIAA 76 (151)
T ss_pred HHHHHHHHHHHcCCCCeeEEEecCChhHHHHh
Confidence 445555544 2 24556899999986655544
No 347
>PRK07409 threonine synthase; Validated
Probab=34.08 E-value=1.4e+02 Score=22.82 Aligned_cols=64 Identities=23% Similarity=0.254 Sum_probs=37.7
Q ss_pred eCccccccCCCCCCCChHHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHHCCccceeecccc
Q 032621 50 FNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGG 113 (137)
Q Consensus 50 inip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG 113 (137)
+.+..+.+++.+.+.+.-....+......+...|+.+.+|..+..+++..+..|++-..++..+
T Consensus 48 i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~~~iv~aSsGN~g~alA~~a~~~G~~~~ivvP~~ 111 (353)
T PRK07409 48 VYVKYEGLNPTGSFKDRGMTMAVTKAKEEGAKAVICASTGNTSASAAAYAARAGLKAFVLIPEG 111 (353)
T ss_pred EEEEecCCCCccchHHHHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 5666666666665443222222332233344556666778888888888888999733445443
No 348
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=34.06 E-value=1.4e+02 Score=23.12 Aligned_cols=63 Identities=11% Similarity=0.120 Sum_probs=37.8
Q ss_pred eCccccccCCCCCCCChHHHHHHHhh-----ccCCCcEEEEeCCCchHHHHHHHHHHCCccceeeccc
Q 032621 50 FNIPYMFNTPEGRVKNPDFLKKVRSL-----CKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGG 112 (137)
Q Consensus 50 inip~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~G 112 (137)
+.+-.+.+++.+.+...-....+... +.++...|+-+.+|..+..+|+..+.+|++=+.++..
T Consensus 76 I~~KlE~~nPtGS~KdR~A~~~l~~a~~~G~i~pG~~~vV~aSsGN~G~alA~~a~~~G~~~~ivvp~ 143 (368)
T PLN02556 76 IAAKQEMFQPTSSIKDRPALAMIEDAEKKNLITPGKTTLIEPTSGNMGISLAFMAAMKGYKMILTMPS 143 (368)
T ss_pred EEEEecccCCccchHHHHHHHHHHHHHHcCCcCCCCCEEEEeCCchHHHHHHHHHHHcCCCEEEEECC
Confidence 66666666777654332222222222 3344455666778999999999999999973334443
No 349
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=34.00 E-value=69 Score=25.92 Aligned_cols=34 Identities=29% Similarity=0.174 Sum_probs=28.4
Q ss_pred CCCcEEEEeC---CCchHHHHHHHHHHCCccceeecc
Q 032621 78 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVSNFG 111 (137)
Q Consensus 78 ~~~~iv~~c~---~g~ra~~~~~~l~~~G~~~v~~l~ 111 (137)
+++.|+++++ +|.....++..|++.|-..|+...
T Consensus 359 ~gk~vvlvDD~i~tG~Tl~~~~~~l~~~Ga~~v~~~~ 395 (479)
T PRK09123 359 EGKRVVLVDDSIVRGTTSRKIVQMLRDAGAKEVHLRI 395 (479)
T ss_pred CCCEEEEEeceeCchHHHHHHHHHHHHcCCCEEEEEE
Confidence 4678999988 688899999999999998777544
No 350
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=33.84 E-value=1.8e+02 Score=20.91 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=20.7
Q ss_pred CCcEEEEeCCCchHHHHHHHH-HHCCcc
Q 032621 79 EDRLVVGCQSGARSLHATADL-LGAGFK 105 (137)
Q Consensus 79 ~~~iv~~c~~g~ra~~~~~~l-~~~G~~ 105 (137)
.+.-++||.....|......| .+.|+.
T Consensus 147 ~~~~v~vagDD~~Ak~~v~~L~~~iG~~ 174 (211)
T COG2085 147 GRRDVLVAGDDAEAKAVVAELAEDIGFR 174 (211)
T ss_pred CceeEEEecCcHHHHHHHHHHHHhcCcc
Confidence 577899999888887776655 458886
No 351
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=33.81 E-value=1e+02 Score=18.29 Aligned_cols=17 Identities=12% Similarity=-0.175 Sum_probs=8.3
Q ss_pred HHHHHHHHCCccceeecc
Q 032621 94 HATADLLGAGFKHVSNFG 111 (137)
Q Consensus 94 ~~~~~l~~~G~~~v~~l~ 111 (137)
.+...+....++ +.+++
T Consensus 34 ~~~~~~~~~~~d-~iiid 50 (112)
T PF00072_consen 34 EALELLKKHPPD-LIIID 50 (112)
T ss_dssp HHHHHHHHSTES-EEEEE
T ss_pred HHHHHhcccCce-EEEEE
Confidence 334444555543 55554
No 352
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=33.73 E-value=1.4e+02 Score=24.17 Aligned_cols=32 Identities=22% Similarity=0.219 Sum_probs=23.2
Q ss_pred HHHHHHHHHH-CCccceeeccccHHHHHhCCCce
Q 032621 92 SLHATADLLG-AGFKHVSNFGGGHMAWVQNGLKV 124 (137)
Q Consensus 92 a~~~~~~l~~-~G~~~v~~l~GG~~~w~~~~~p~ 124 (137)
+...|.+++. .|.+ |.++-..+..|.++..++
T Consensus 225 a~tiAEyfrd~~G~~-VLll~DslTR~A~A~REi 257 (463)
T PRK09280 225 GLTMAEYFRDVEGQD-VLLFIDNIFRFTQAGSEV 257 (463)
T ss_pred HHHHHHHHHHhcCCc-eEEEecchHHHHHHHHHH
Confidence 4556788888 9974 887777898887764433
No 353
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=33.66 E-value=82 Score=21.24 Aligned_cols=18 Identities=28% Similarity=0.226 Sum_probs=8.9
Q ss_pred CCCchHHHHHHHHHHCCc
Q 032621 87 QSGARSLHATADLLGAGF 104 (137)
Q Consensus 87 ~~g~ra~~~~~~l~~~G~ 104 (137)
.+|.-|..+++.|.+.|+
T Consensus 7 SGG~DS~~la~ll~~~g~ 24 (177)
T cd01712 7 SGGIDSPVAAWLLMKRGI 24 (177)
T ss_pred cCChhHHHHHHHHHHcCC
Confidence 344455555555555554
No 354
>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=33.66 E-value=1e+02 Score=24.65 Aligned_cols=39 Identities=26% Similarity=0.430 Sum_probs=27.5
Q ss_pred EEEe-CCCchHHHHHHHHHH--CCccceeeccccHHHHHhCC
Q 032621 83 VVGC-QSGARSLHATADLLG--AGFKHVSNFGGGHMAWVQNG 121 (137)
Q Consensus 83 v~~c-~~g~ra~~~~~~l~~--~G~~~v~~l~GG~~~w~~~~ 121 (137)
+++| ++|..|-.+|-.|.. -|-++|..+.|||.+|....
T Consensus 129 v~f~~~SGSEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a 170 (464)
T PRK06938 129 IQFCGPTGTDAVEAALKLVKTATGRSTVLSFQGGYHGMSQGA 170 (464)
T ss_pred EEEeCCCcHHHHHHHHHHHHHhhCCCeEEEECCccCCccHHH
Confidence 4455 789888777776654 36566888889888876443
No 355
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=33.46 E-value=1.1e+02 Score=19.83 Aligned_cols=43 Identities=23% Similarity=0.186 Sum_probs=28.8
Q ss_pred EEeCCCchHHHHHHHHHHCCccceeecccc--HHHHHhCCCceecC
Q 032621 84 VGCQSGARSLHATADLLGAGFKHVSNFGGG--HMAWVQNGLKVKAR 127 (137)
Q Consensus 84 ~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG--~~~w~~~~~p~~~~ 127 (137)
+++..|.-....++.|.+.|++ |..+.-+ +..+.+.++.+...
T Consensus 2 ~I~G~GaiG~~~a~~L~~~g~~-V~l~~r~~~~~~~~~~g~~~~~~ 46 (151)
T PF02558_consen 2 LIIGAGAIGSLYAARLAQAGHD-VTLVSRSPRLEAIKEQGLTITGP 46 (151)
T ss_dssp EEESTSHHHHHHHHHHHHTTCE-EEEEESHHHHHHHHHHCEEEEET
T ss_pred EEECcCHHHHHHHHHHHHCCCc-eEEEEccccHHhhhheeEEEEec
Confidence 4445677777888888889986 7766543 45666667665543
No 356
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=33.43 E-value=96 Score=23.93 Aligned_cols=15 Identities=27% Similarity=0.640 Sum_probs=11.5
Q ss_pred ccCCCcEEEEeCCCc
Q 032621 76 CKEEDRLVVGCQSGA 90 (137)
Q Consensus 76 ~~~~~~iv~~c~~g~ 90 (137)
++.+..|+.+|+.|.
T Consensus 147 l~~~~~VLThCNaGa 161 (346)
T COG0182 147 LPDGDTVLTHCNAGA 161 (346)
T ss_pred hccCCeEEeeecCCc
Confidence 667777888999773
No 357
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=33.02 E-value=1e+02 Score=27.46 Aligned_cols=37 Identities=16% Similarity=0.064 Sum_probs=31.2
Q ss_pred ccCCCcEEEEeCCCchHHHHHHHHHHCCccceeecccc
Q 032621 76 CKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGG 113 (137)
Q Consensus 76 ~~~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG 113 (137)
...+.+|+|.|.+-..|..++..|...|++ ..+|.+.
T Consensus 595 ~~~grpVLIft~Sve~sE~Ls~~L~~~gI~-h~vLnak 631 (1025)
T PRK12900 595 QKKGQPVLVGTASVEVSETLSRMLRAKRIA-HNVLNAK 631 (1025)
T ss_pred hhCCCCEEEEeCcHHHHHHHHHHHHHcCCC-ceeecCC
Confidence 456889999999988999999999999997 5566654
No 358
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=32.80 E-value=1e+02 Score=18.19 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=17.9
Q ss_pred cEEEEeCCCc--hHHHHHHHHHHCCcc
Q 032621 81 RLVVGCQSGA--RSLHATADLLGAGFK 105 (137)
Q Consensus 81 ~iv~~c~~g~--ra~~~~~~l~~~G~~ 105 (137)
+|.++-.+|. .|..++..|+..||+
T Consensus 5 ~V~VlNgt~~~GlA~~~a~~L~~~Gf~ 31 (90)
T PF13399_consen 5 RVEVLNGTGVSGLAARVADALRNRGFT 31 (90)
T ss_pred EEEEEECcCCcCHHHHHHHHHHHCCCc
Confidence 4555555554 588888899999986
No 359
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=32.77 E-value=1.6e+02 Score=21.81 Aligned_cols=34 Identities=21% Similarity=0.267 Sum_probs=24.4
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHCCccceeecccc
Q 032621 79 EDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGG 113 (137)
Q Consensus 79 ~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG 113 (137)
+++++++ ..|.-+..++..|...|..+|++++--
T Consensus 127 ~k~vlIl-GaGGaaraia~aL~~~G~~~I~I~nR~ 160 (284)
T PRK12549 127 LERVVQL-GAGGAGAAVAHALLTLGVERLTIFDVD 160 (284)
T ss_pred CCEEEEE-CCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3445555 456677778888889999888887653
No 360
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=32.51 E-value=87 Score=24.22 Aligned_cols=51 Identities=22% Similarity=0.187 Sum_probs=32.7
Q ss_pred HHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHH--------CCccceeeccccHHHHHh
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLG--------AGFKHVSNFGGGHMAWVQ 119 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~--------~G~~~v~~l~GG~~~w~~ 119 (137)
++.+++.+... .+-+++|++|..|-.++-.+.. .|-+++..+++++.+|..
T Consensus 81 ~la~~L~~~~~--~~~~~f~~SGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~ 139 (397)
T TIGR03246 81 RLAKKLVDATF--ADKVFFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTL 139 (397)
T ss_pred HHHHHHHhhCC--CCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccH
Confidence 45566655532 2357888899887777665542 255567788888777643
No 361
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=32.49 E-value=77 Score=25.52 Aligned_cols=35 Identities=23% Similarity=0.195 Sum_probs=25.8
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHCCcccee--eccccH
Q 032621 79 EDRLVVGCQSGARSLHATADLLGAGFKHVS--NFGGGH 114 (137)
Q Consensus 79 ~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~--~l~GG~ 114 (137)
+.++++.+.+|.-|..+++++.+.|++ |. .++.|.
T Consensus 177 ~gk~lvllSGGiDS~va~~~~~krG~~-v~~l~f~~g~ 213 (482)
T PRK01269 177 QEDVLSLISGGFDSGVASYMLMRRGSR-VHYCFFNLGG 213 (482)
T ss_pred cCeEEEEEcCCchHHHHHHHHHHcCCE-EEEEEEecCC
Confidence 456777778889999999999889985 54 344443
No 362
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=32.39 E-value=72 Score=24.46 Aligned_cols=40 Identities=13% Similarity=-0.019 Sum_probs=30.7
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHHCCcc-ceeeccccHHHH
Q 032621 78 EEDRLVVGCQSGARSLHATADLLGAGFK-HVSNFGGGHMAW 117 (137)
Q Consensus 78 ~~~~iv~~c~~g~ra~~~~~~l~~~G~~-~v~~l~GG~~~w 117 (137)
.+.+++++|++-..+...+..|+..|.. .+..+.|.....
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~ 311 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKK 311 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHH
Confidence 4567999999989999999999987643 466777765443
No 363
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=32.38 E-value=1.2e+02 Score=18.22 Aligned_cols=47 Identities=13% Similarity=0.091 Sum_probs=36.2
Q ss_pred hHHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHHCCccceeeccccH
Q 032621 66 PDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGH 114 (137)
Q Consensus 66 ~~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~ 114 (137)
.++.+.+.+.+..+.++......|..+.....+|.+.| ++...+||+
T Consensus 23 ~~L~~ai~~~FG~~arFhTCSae~m~a~eLv~FL~~rg--Kfi~~~~g~ 69 (78)
T PF10678_consen 23 EELKAAIIEKFGEDARFHTCSAEGMTADELVDFLEERG--KFIPSDDGF 69 (78)
T ss_pred HHHHHHHHHHhCCCceEEecCCCCCCHHHHHHHHHHcC--CEeecCCCE
Confidence 46666666667788888777778889999999999988 366667765
No 364
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=32.35 E-value=99 Score=18.40 Aligned_cols=28 Identities=18% Similarity=0.077 Sum_probs=19.6
Q ss_pred CCCcEEEEeC------CCchHHHHHHHHHHCCcc
Q 032621 78 EEDRLVVGCQ------SGARSLHATADLLGAGFK 105 (137)
Q Consensus 78 ~~~~iv~~c~------~g~ra~~~~~~l~~~G~~ 105 (137)
++.+||++.. ....+..+...|.+.|.+
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~ 39 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVD 39 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCC
Confidence 3466777754 355788888888888864
No 365
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=32.32 E-value=95 Score=24.30 Aligned_cols=28 Identities=14% Similarity=0.077 Sum_probs=21.6
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHHCCcc
Q 032621 78 EEDRLVVGCQSGARSLHATADLLGAGFK 105 (137)
Q Consensus 78 ~~~~iv~~c~~g~ra~~~~~~l~~~G~~ 105 (137)
.+.++++.+.+|.-|..+++.+.+.|++
T Consensus 175 ~~gkvvvllSGGiDS~vaa~l~~k~G~~ 202 (394)
T PRK01565 175 TSGKALLLLSGGIDSPVAGYLAMKRGVE 202 (394)
T ss_pred CCCCEEEEECCChhHHHHHHHHHHCCCE
Confidence 4566777777888888888888888875
No 366
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=32.26 E-value=56 Score=22.76 Aligned_cols=32 Identities=16% Similarity=0.105 Sum_probs=22.7
Q ss_pred cEEEEeC--CCchHHHHHHHHHHCCccceeecccc
Q 032621 81 RLVVGCQ--SGARSLHATADLLGAGFKHVSNFGGG 113 (137)
Q Consensus 81 ~iv~~c~--~g~ra~~~~~~l~~~G~~~v~~l~GG 113 (137)
+|-+..+ +|......|..+...|++ |.++.|-
T Consensus 19 ~VR~ItN~SSG~~G~~lA~~~~~~Ga~-V~li~g~ 52 (185)
T PF04127_consen 19 PVRFITNRSSGKMGAALAEEAARRGAE-VTLIHGP 52 (185)
T ss_dssp SSEEEEES--SHHHHHHHHHHHHTT-E-EEEEE-T
T ss_pred CceEecCCCcCHHHHHHHHHHHHCCCE-EEEEecC
Confidence 4445555 688899999999999996 8888874
No 367
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=32.23 E-value=90 Score=24.67 Aligned_cols=33 Identities=12% Similarity=0.088 Sum_probs=27.8
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHHCCccceeecc
Q 032621 78 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFG 111 (137)
Q Consensus 78 ~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~ 111 (137)
....+|+.+..|.-....+.++++.|+ +|++++
T Consensus 69 ~~~s~iV~D~KgEl~~~t~~~r~~~G~-~V~vld 101 (469)
T PF02534_consen 69 YPGSMIVTDPKGELYEKTAGYRKKRGY-KVYVLD 101 (469)
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHCCC-EEEEee
Confidence 334899999999888888899999999 588776
No 368
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=32.18 E-value=64 Score=24.48 Aligned_cols=51 Identities=20% Similarity=0.247 Sum_probs=35.9
Q ss_pred HHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHH--------CCccceeeccccHHHH
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLG--------AGFKHVSNFGGGHMAW 117 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~--------~G~~~v~~l~GG~~~w 117 (137)
++.+++.+..+....-+++|.+|..|-..|-.+.. -|-.+|..+.|+|.++
T Consensus 63 ~la~~L~~~~p~~~~~v~f~~sGseAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~ 121 (339)
T PF00202_consen 63 ELAEKLAELFPGGLDRVFFANSGSEAVEAALKLARQYHNKRAYTGRRKILAFEGSYHGR 121 (339)
T ss_dssp HHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TS
T ss_pred hhhhhhhhccccccceeeeccCchHHHHHHHHHhhcccccccccCCceEEEeeeeeecc
Confidence 67777777765566778899999988777766655 3556677788877654
No 369
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=32.14 E-value=76 Score=28.06 Aligned_cols=39 Identities=15% Similarity=0.163 Sum_probs=32.9
Q ss_pred ccCCCcEEEEeCCCchHHHHHHHHHHCCccceeeccccHH
Q 032621 76 CKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM 115 (137)
Q Consensus 76 ~~~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~~ 115 (137)
..++...||||.+-..+..++..|...|+. ...|..|+.
T Consensus 482 ~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~-a~~YHAGl~ 520 (941)
T KOG0351|consen 482 RHPDQSGIIYCLSRKECEQVSAVLRSLGKS-AAFYHAGLP 520 (941)
T ss_pred cCCCCCeEEEeCCcchHHHHHHHHHHhchh-hHhhhcCCC
Confidence 467888999999988999999999999975 667777764
No 370
>PRK12828 short chain dehydrogenase; Provisional
Probab=32.13 E-value=91 Score=21.46 Aligned_cols=31 Identities=16% Similarity=0.096 Sum_probs=17.2
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHCCccceeec
Q 032621 79 EDRLVVGCQSGARSLHATADLLGAGFKHVSNF 110 (137)
Q Consensus 79 ~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l 110 (137)
++.++|.+.+|.-...++..|.+.|++ |..+
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~G~~-v~~~ 37 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAARGAR-VALI 37 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHCCCe-EEEE
Confidence 345566555555555555666656664 4433
No 371
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=32.04 E-value=94 Score=20.07 Aligned_cols=34 Identities=9% Similarity=0.061 Sum_probs=25.3
Q ss_pred EEeCCCchHHHHHHHHHHCCccceeeccccHHHH
Q 032621 84 VGCQSGARSLHATADLLGAGFKHVSNFGGGHMAW 117 (137)
Q Consensus 84 ~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~~~w 117 (137)
+++.-|.-....+..|...|+.++.++|......
T Consensus 3 liiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~ 36 (143)
T cd01483 3 LLVGLGGLGSEIALNLARSGVGKITLIDFDTVEL 36 (143)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCc
Confidence 3444566777888899999998899998765443
No 372
>TIGR03251 LAT_fam L-lysine 6-transaminase. Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.
Probab=32.00 E-value=69 Score=25.24 Aligned_cols=53 Identities=9% Similarity=0.029 Sum_probs=32.9
Q ss_pred HHHHHHhhc-cCCCcEEEEeCCCchHHHHHHHHHH-C--------Cc-----cceeeccccHHHHHhC
Q 032621 68 FLKKVRSLC-KEEDRLVVGCQSGARSLHATADLLG-A--------GF-----KHVSNFGGGHMAWVQN 120 (137)
Q Consensus 68 ~~~~~~~~~-~~~~~iv~~c~~g~ra~~~~~~l~~-~--------G~-----~~v~~l~GG~~~w~~~ 120 (137)
+.+++.+.. .++-.-+++|++|..|-.+|-.|.. + |. ++|..+.|+|.+|...
T Consensus 90 l~~~l~~~~~~~~~~~v~f~~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~ 157 (431)
T TIGR03251 90 FVDTFARVLGDPALPHLFFIEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGY 157 (431)
T ss_pred HHHHHHHhcCCCCcCEEEEeCCcHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchh
Confidence 343444332 3344568999999988777766553 1 32 3477788888776543
No 373
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=31.96 E-value=1.5e+02 Score=20.99 Aligned_cols=34 Identities=15% Similarity=0.233 Sum_probs=22.4
Q ss_pred cEEEEeCCCchHHHHHHHHHHCCccceeeccccH
Q 032621 81 RLVVGCQSGARSLHATADLLGAGFKHVSNFGGGH 114 (137)
Q Consensus 81 ~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~ 114 (137)
..|+.+.+|..+..++...+..|++=+.++..+.
T Consensus 51 ~~vv~~ssGN~g~alA~~a~~~g~~~~v~~p~~~ 84 (244)
T cd00640 51 GVIIESTGGNTGIALAAAAARLGLKCTIVMPEGA 84 (244)
T ss_pred CEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCC
Confidence 4455555678888888888889987333444443
No 374
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=31.94 E-value=95 Score=24.08 Aligned_cols=30 Identities=17% Similarity=0.210 Sum_probs=21.5
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHHCCcccee
Q 032621 78 EEDRLVVGCQSGARSLHATADLLGAGFKHVS 108 (137)
Q Consensus 78 ~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~ 108 (137)
.+.++++...+|.-|..+++.+.+.|++ |.
T Consensus 171 ~~~kvlvllSGGiDS~vaa~ll~krG~~-V~ 200 (371)
T TIGR00342 171 TQGKVLALLSGGIDSPVAAFMMMKRGCR-VV 200 (371)
T ss_pred cCCeEEEEecCCchHHHHHHHHHHcCCe-EE
Confidence 3455666667778888888888888875 53
No 375
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=31.91 E-value=1.4e+02 Score=20.82 Aligned_cols=46 Identities=17% Similarity=0.156 Sum_probs=35.4
Q ss_pred HHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHHCCccceeecccc
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGG 113 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG 113 (137)
+|...++.. .++..+|=+.-...+...++..+...|.+|+.++.+-
T Consensus 30 ~~l~~~A~~-~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~d 75 (195)
T PF02390_consen 30 EFLIELAKR-NPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGD 75 (195)
T ss_dssp HHHHHHHHH-STTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-
T ss_pred HHHHHHHHH-CCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEcc
Confidence 667777666 6777777777777788888888888899999998764
No 376
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=31.81 E-value=52 Score=23.25 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=17.2
Q ss_pred HHHHHHHHHHCCccceeecccc
Q 032621 92 SLHATADLLGAGFKHVSNFGGG 113 (137)
Q Consensus 92 a~~~~~~l~~~G~~~v~~l~GG 113 (137)
|..+...|.+.|+. +++|||-
T Consensus 40 A~ale~~L~~~G~~-~y~LDGD 60 (197)
T COG0529 40 ANALEEKLFAKGYH-VYLLDGD 60 (197)
T ss_pred HHHHHHHHHHcCCe-EEEecCh
Confidence 56667788999985 9999995
No 377
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=31.71 E-value=1.8e+02 Score=20.29 Aligned_cols=50 Identities=20% Similarity=0.257 Sum_probs=35.1
Q ss_pred ccCCCcEEEEeC---CCchHHHHHHHHHHCCccc--ee-ecc----ccHHHHHhCCCcee
Q 032621 76 CKEEDRLVVGCQ---SGARSLHATADLLGAGFKH--VS-NFG----GGHMAWVQNGLKVK 125 (137)
Q Consensus 76 ~~~~~~iv~~c~---~g~ra~~~~~~l~~~G~~~--v~-~l~----GG~~~w~~~~~p~~ 125 (137)
+.++++++++++ +|.....+...+++.|.+- +. +++ ||-....+.+.|+.
T Consensus 114 l~~G~rVLIVDDvvtTGgT~~a~~~ll~~aGa~Vvgv~~lvd~~~~~g~~~l~~~gvpv~ 173 (191)
T TIGR01744 114 LSDQDRVLIIDDFLANGQAAHGLVDIAKQAGAKIAGIGIVIEKSFQNGRQELVELGYRVE 173 (191)
T ss_pred CCCcCEEEEEEehhccChHHHHHHHHHHHCCCEEEEEEEEEEecCccHHHHHHhcCCcEE
Confidence 468899999998 7888999999999999752 22 232 44444455566654
No 378
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=31.48 E-value=1.1e+02 Score=22.13 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=17.0
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHCCcc
Q 032621 79 EDRLVVGCQSGARSLHATADLLGAGFK 105 (137)
Q Consensus 79 ~~~iv~~c~~g~ra~~~~~~l~~~G~~ 105 (137)
.+.+++...+|.-|..++..+.+.|++
T Consensus 12 ~~~vlVa~SGGvDSs~ll~la~~~g~~ 38 (252)
T TIGR00268 12 FKKVLIAYSGGVDSSLLAAVCSDAGTE 38 (252)
T ss_pred cCCEEEEecCcHHHHHHHHHHHHhCCC
Confidence 345566566666777777666666654
No 379
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=31.48 E-value=82 Score=19.86 Aligned_cols=35 Identities=26% Similarity=0.307 Sum_probs=26.4
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHHCCccceeecccc
Q 032621 78 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGG 113 (137)
Q Consensus 78 ~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG 113 (137)
.+-.+||.|.....+...+..+.+.|+. |.-+.+-
T Consensus 65 ~~~Dvvf~a~~~~~~~~~~~~~~~~g~~-ViD~s~~ 99 (121)
T PF01118_consen 65 SDVDVVFLALPHGASKELAPKLLKAGIK-VIDLSGD 99 (121)
T ss_dssp TTESEEEE-SCHHHHHHHHHHHHHTTSE-EEESSST
T ss_pred hcCCEEEecCchhHHHHHHHHHhhCCcE-EEeCCHH
Confidence 4567999998888888889999999983 6666553
No 380
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=31.40 E-value=2.7e+02 Score=22.13 Aligned_cols=62 Identities=16% Similarity=0.045 Sum_probs=35.8
Q ss_pred eCccccccCCCCCCCChHHHHHHHhhccCC-CcEEEEeCCCchHHHHHHHHHHCCccceeecc
Q 032621 50 FNIPYMFNTPEGRVKNPDFLKKVRSLCKEE-DRLVVGCQSGARSLHATADLLGAGFKHVSNFG 111 (137)
Q Consensus 50 inip~~~~~~~~~~~~~~~~~~~~~~~~~~-~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~ 111 (137)
+.+-.+.+++.+.....-....+......+ +.+++-+.+|+.+..+|...+.+|++-+.++.
T Consensus 87 Iy~K~E~~nPtGS~K~R~A~~~~~~a~~~G~~~~vtetssGN~G~alA~aaa~~Gl~~~V~mp 149 (419)
T TIGR01415 87 IYYKYESVSPTGSHKINTAIAQAYYAKIEGAKRLVTETGAGQWGSALSLAGALFGLECKVFMV 149 (419)
T ss_pred EEEEECCCCCCCCcHHHHHHHHHHHHHHcCCCeEEEecCchHHHHHHHHHHHHcCCcEEEEEe
Confidence 566666667776554332233332222223 34444456788888889999999997333343
No 381
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=31.14 E-value=71 Score=20.33 Aligned_cols=29 Identities=14% Similarity=0.440 Sum_probs=23.9
Q ss_pred ceeeeCHHHHHHHhhCC--CEEEecCChHHH
Q 032621 11 EVITVDVRAAKNLLESG--YGYLDVRTAEEF 39 (137)
Q Consensus 11 ~~~~is~~~~~~~~~~~--~~viDvR~~~e~ 39 (137)
....|+.+++.+++..+ +.|+|+.+-++-
T Consensus 16 tS~YITLedi~~lV~~g~~f~V~DakTgeDi 46 (107)
T TIGR01848 16 TSSYVTLEDIRDLVREGREFQVVDSKSGDDL 46 (107)
T ss_pred ccceeeHHHHHHHHHCCCeEEEEECCCCchh
Confidence 34689999999999886 889999986554
No 382
>PRK09620 hypothetical protein; Provisional
Probab=31.05 E-value=86 Score=22.59 Aligned_cols=32 Identities=19% Similarity=0.252 Sum_probs=22.7
Q ss_pred CcEEEEeC--CCchHHHHHHHHHHCCccceeeccc
Q 032621 80 DRLVVGCQ--SGARSLHATADLLGAGFKHVSNFGG 112 (137)
Q Consensus 80 ~~iv~~c~--~g~ra~~~~~~l~~~G~~~v~~l~G 112 (137)
++|-+..+ +|......+..|...|++ |.+++|
T Consensus 18 D~VR~itN~SSGfiGs~LA~~L~~~Ga~-V~li~g 51 (229)
T PRK09620 18 DQVRGHTNMAKGTIGRIIAEELISKGAH-VIYLHG 51 (229)
T ss_pred CCeeEecCCCcCHHHHHHHHHHHHCCCe-EEEEeC
Confidence 44444544 477788888888888886 877775
No 383
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=30.93 E-value=89 Score=21.90 Aligned_cols=31 Identities=29% Similarity=0.176 Sum_probs=26.1
Q ss_pred cCCCcEEEEeC---CCchHHHHHHHHHHCCccce
Q 032621 77 KEEDRLVVGCQ---SGARSLHATADLLGAGFKHV 107 (137)
Q Consensus 77 ~~~~~iv~~c~---~g~ra~~~~~~l~~~G~~~v 107 (137)
.+++.++++++ +|.....+...|++.|-+.+
T Consensus 138 ~~gk~VlIVDDVitTG~Tl~~ai~~l~~~Ga~~v 171 (200)
T PRK02277 138 VEGKRCVIVDDVITSGTTMKETIEYLKEHGGKPV 171 (200)
T ss_pred CCcCEEEEEeeccCchHHHHHHHHHHHHcCCEEE
Confidence 36788999988 78889999999999997654
No 384
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=30.84 E-value=93 Score=24.16 Aligned_cols=51 Identities=20% Similarity=0.133 Sum_probs=32.8
Q ss_pred HHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHH-C-------CccceeeccccHHHHHh
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLG-A-------GFKHVSNFGGGHMAWVQ 119 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~-~-------G~~~v~~l~GG~~~w~~ 119 (137)
++.+.+.+... ..-+++|++|..|-.++-.+.. . |-+.|..++++|.+|..
T Consensus 85 ~la~~l~~~~~--~~~v~~~~sGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~ 143 (406)
T PRK12381 85 RLAKKLIDATF--ADRVFFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTL 143 (406)
T ss_pred HHHHHHHhhCC--CCeEEEcCCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcch
Confidence 45556655432 2358888999987777766543 1 33457778888887754
No 385
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=30.60 E-value=79 Score=24.34 Aligned_cols=30 Identities=17% Similarity=0.300 Sum_probs=23.6
Q ss_pred EEEeCCCchHHHHHHHHHHCCccceeecccc
Q 032621 83 VVGCQSGARSLHATADLLGAGFKHVSNFGGG 113 (137)
Q Consensus 83 v~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG 113 (137)
|++..+|.-...+|+.|.+.|.+ |.+|+.+
T Consensus 4 vvIIGaG~~G~~~A~~La~~g~~-V~vle~~ 33 (410)
T PRK12409 4 IAVIGAGITGVTTAYALAQRGYQ-VTVFDRH 33 (410)
T ss_pred EEEECCCHHHHHHHHHHHHCCCe-EEEEeCC
Confidence 34446788888999999999975 9888765
No 386
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=30.49 E-value=1.2e+02 Score=17.76 Aligned_cols=31 Identities=23% Similarity=0.238 Sum_probs=21.5
Q ss_pred CcEEEEeCCC----chHHHHHHHHHHCCccceeecc
Q 032621 80 DRLVVGCQSG----ARSLHATADLLGAGFKHVSNFG 111 (137)
Q Consensus 80 ~~iv~~c~~g----~ra~~~~~~l~~~G~~~v~~l~ 111 (137)
+.+|+++.+- .|=...+..|.+.||. |+.+|
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~-V~~~D 50 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGYA-VFAYD 50 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCCE-EEEEC
Confidence 5577777742 2456677889999996 77554
No 387
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=30.45 E-value=94 Score=27.56 Aligned_cols=37 Identities=22% Similarity=0.409 Sum_probs=30.7
Q ss_pred CCCcEEEEeCCCchHHHHHHHH-HHCCccceeeccccHH
Q 032621 78 EEDRLVVGCQSGARSLHATADL-LGAGFKHVSNFGGGHM 115 (137)
Q Consensus 78 ~~~~iv~~c~~g~ra~~~~~~l-~~~G~~~v~~l~GG~~ 115 (137)
...+++|+|++-..+......| ...|++ +..+.||..
T Consensus 492 ~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~-~~~ihG~~s 529 (956)
T PRK04914 492 RSEKVLVICAKAATALQLEQALREREGIR-AAVFHEGMS 529 (956)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHhhccCee-EEEEECCCC
Confidence 4677999999988999999999 457996 778898864
No 388
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=30.36 E-value=84 Score=23.07 Aligned_cols=30 Identities=27% Similarity=0.323 Sum_probs=24.1
Q ss_pred EEEeCCCchHHHHHHHHHHCCccceeecccc
Q 032621 83 VVGCQSGARSLHATADLLGAGFKHVSNFGGG 113 (137)
Q Consensus 83 v~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG 113 (137)
|++...|.-....|+.|.+.|++ |.+++-+
T Consensus 2 vvIIGaGi~G~~~A~~La~~G~~-V~l~e~~ 31 (358)
T PF01266_consen 2 VVIIGAGIAGLSTAYELARRGHS-VTLLERG 31 (358)
T ss_dssp EEEECTSHHHHHHHHHHHHTTSE-EEEEESS
T ss_pred EEEECcCHHHHHHHHHHHHCCCe-EEEEeec
Confidence 34457788999999999999994 9888754
No 389
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=30.25 E-value=1.4e+02 Score=22.23 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=30.4
Q ss_pred hHHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHHCCcc
Q 032621 66 PDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFK 105 (137)
Q Consensus 66 ~~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~~G~~ 105 (137)
.++...+.++...+..+|++|..+..+..+...+++.|+.
T Consensus 179 ~d~~~~l~~i~~~~~dvvi~~~~~~~~~~~~~~a~~~g~~ 218 (350)
T cd06366 179 DDITDALKKLKEKDSRVIVVHFSPDLARRVFCEAYKLGMM 218 (350)
T ss_pred hHHHHHHHHHhcCCCeEEEEECChHHHHHHHHHHHHcCCc
Confidence 4677777666445566888888888888888888999984
No 390
>KOG1706 consensus Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=30.24 E-value=65 Score=24.80 Aligned_cols=32 Identities=16% Similarity=0.244 Sum_probs=21.0
Q ss_pred CcEEEEeCCCchHHHHHHHHHHCCccceeecc
Q 032621 80 DRLVVGCQSGARSLHATADLLGAGFKHVSNFG 111 (137)
Q Consensus 80 ~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~ 111 (137)
+.+|+.|.+|.-......||++.||+-+.++.
T Consensus 6 ~~vVLAySGgLDTscil~WLkeqGyeViay~A 37 (412)
T KOG1706|consen 6 KSVVLAYSGGLDTSCILAWLKEQGYEVIAYLA 37 (412)
T ss_pred ceEEEEecCCcCchhhhHHHHhcCceEEEeec
Confidence 45677777777555555567778888555554
No 391
>PRK04612 argD acetylornithine transaminase protein; Provisional
Probab=30.19 E-value=85 Score=24.58 Aligned_cols=52 Identities=17% Similarity=0.264 Sum_probs=32.3
Q ss_pred HHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHH-----CCc----cceeeccccHHHHHh
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLG-----AGF----KHVSNFGGGHMAWVQ 119 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~-----~G~----~~v~~l~GG~~~w~~ 119 (137)
++.+.+.+.. +...-+++|++|..|-.+|-.|.. .|. .+|..+.|||.+|..
T Consensus 86 ~la~~L~~~~-~~~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~ 146 (408)
T PRK04612 86 KLAEELVTAS-RFAEKVFLCNSGTEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTL 146 (408)
T ss_pred HHHHHHHhhC-CCCCEEEEcCchHHHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccH
Confidence 4555555543 223568889999887776665544 242 346778888776643
No 392
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=29.94 E-value=93 Score=23.67 Aligned_cols=32 Identities=22% Similarity=0.468 Sum_probs=24.0
Q ss_pred cEEEEeCCC--------chHHHHHHHHHHCCccceeecccc
Q 032621 81 RLVVGCQSG--------ARSLHATADLLGAGFKHVSNFGGG 113 (137)
Q Consensus 81 ~iv~~c~~g--------~ra~~~~~~l~~~G~~~v~~l~GG 113 (137)
+|+|.|++| .|....|..|++.|+. +.+|.+.
T Consensus 2 ~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~-~~fl~k~ 41 (318)
T COG3980 2 KVLIRCDGGLEIGMGHVMRTLTLARELEKRGFA-CLFLTKQ 41 (318)
T ss_pred cEEEEecCCcccCcchhhhHHHHHHHHHhcCce-EEEeccc
Confidence 578888865 4789999999999965 5566543
No 393
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=29.78 E-value=95 Score=23.92 Aligned_cols=50 Identities=14% Similarity=0.220 Sum_probs=30.8
Q ss_pred HHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHH----------CCccceeeccccHHHHH
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLG----------AGFKHVSNFGGGHMAWV 118 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~----------~G~~~v~~l~GG~~~w~ 118 (137)
++.+++.+.... +-+++|++|..|-.++-.+.. .|-++|..++|++.+|.
T Consensus 86 ~l~~~l~~~~~~--~~~~~~~SGseA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~ 145 (396)
T PRK04073 86 PWYEKVAKLTGK--DMVLPMNTGAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRT 145 (396)
T ss_pred HHHHHHHhcCCC--CeEEEcCChHHHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCC
Confidence 456666555322 356778889887776655442 23345777788777654
No 394
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=29.61 E-value=1.6e+02 Score=19.45 Aligned_cols=52 Identities=15% Similarity=0.061 Sum_probs=24.5
Q ss_pred CCCChHHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHHCC-ccceeeccccH
Q 032621 62 RVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAG-FKHVSNFGGGH 114 (137)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~~G-~~~v~~l~GG~ 114 (137)
+++..++.+++.+. +..+-|++|..+-.....+...+++.. -+.|..|.+|-
T Consensus 39 dv~~~d~l~~~~~D-~~t~~I~ly~E~~~d~~~f~~~~~~a~~~KPVv~lk~Gr 91 (138)
T PF13607_consen 39 DVDFADLLEYLAED-PDTRVIVLYLEGIGDGRRFLEAARRAARRKPVVVLKAGR 91 (138)
T ss_dssp SS-HHHHHHHHCT--SS--EEEEEES--S-HHHHHHHHHHHCCCS-EEEEE---
T ss_pred cCCHHHHHHHHhcC-CCCCEEEEEccCCCCHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 33445777777663 233447777775445555555555533 25577787774
No 395
>PRK07233 hypothetical protein; Provisional
Probab=29.59 E-value=80 Score=24.23 Aligned_cols=27 Identities=26% Similarity=0.273 Sum_probs=20.9
Q ss_pred EEeCCCchHHHHHHHHHHCCccceeecc
Q 032621 84 VGCQSGARSLHATADLLGAGFKHVSNFG 111 (137)
Q Consensus 84 ~~c~~g~ra~~~~~~l~~~G~~~v~~l~ 111 (137)
++...|.....+|+.|.+.|++ |.+|+
T Consensus 3 vVIGaGiaGL~aA~~L~~~G~~-v~vlE 29 (434)
T PRK07233 3 AIVGGGIAGLAAAYRLAKRGHE-VTVFE 29 (434)
T ss_pred EEECCCHHHHHHHHHHHHCCCc-EEEEE
Confidence 4446788888899999999985 77664
No 396
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=29.52 E-value=92 Score=17.56 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=19.1
Q ss_pred CCCchHHHHHHHHHHCCccceeeccc
Q 032621 87 QSGARSLHATADLLGAGFKHVSNFGG 112 (137)
Q Consensus 87 ~~g~ra~~~~~~l~~~G~~~v~~l~G 112 (137)
..|.....+|+.|.+.|++ |.+++.
T Consensus 3 GaG~sGl~aA~~L~~~g~~-v~v~E~ 27 (68)
T PF13450_consen 3 GAGISGLAAAYYLAKAGYR-VTVFEK 27 (68)
T ss_dssp S-SHHHHHHHHHHHHTTSE-EEEEES
T ss_pred eeCHHHHHHHHHHHHCCCc-EEEEec
Confidence 3567778889999999984 888764
No 397
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=29.51 E-value=87 Score=21.35 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=24.9
Q ss_pred CCCcEEEEeC---CCchHHHHHHHHHHCCcc
Q 032621 78 EEDRLVVGCQ---SGARSLHATADLLGAGFK 105 (137)
Q Consensus 78 ~~~~iv~~c~---~g~ra~~~~~~l~~~G~~ 105 (137)
++++++++++ +|.....+...|++.|-+
T Consensus 103 ~g~~VlIVDDvi~TG~T~~~~~~~l~~~Ga~ 133 (170)
T PRK13811 103 KGKRVLLVEDVTTSGGSALYGIEQLRAAGAV 133 (170)
T ss_pred CCCEEEEEEecccccHHHHHHHHHHHHCCCe
Confidence 6889999988 788999999999999975
No 398
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=29.46 E-value=81 Score=24.66 Aligned_cols=32 Identities=9% Similarity=0.281 Sum_probs=24.3
Q ss_pred HHHHHHHHHHCCccceeeccccHHHHHhCCCce
Q 032621 92 SLHATADLLGAGFKHVSNFGGGHMAWVQNGLKV 124 (137)
Q Consensus 92 a~~~~~~l~~~G~~~v~~l~GG~~~w~~~~~p~ 124 (137)
+...|.+++++|++ |.++...+..|.++..++
T Consensus 242 a~tiAEYfrd~G~d-Vll~~Ds~tR~A~A~REI 273 (369)
T cd01134 242 GITIAEYFRDMGYN-VALMADSTSRWAEALREI 273 (369)
T ss_pred HHHHHHHHHHcCCC-EEEEEcChhHHHHHHHHH
Confidence 45667888999975 888877899998765443
No 399
>PRK13937 phosphoheptose isomerase; Provisional
Probab=29.45 E-value=1.9e+02 Score=19.86 Aligned_cols=37 Identities=27% Similarity=0.274 Sum_probs=27.5
Q ss_pred hccCCCcEEEEeCCCc--hHHHHHHHHHHCCccceeeccc
Q 032621 75 LCKEEDRLVVGCQSGA--RSLHATADLLGAGFKHVSNFGG 112 (137)
Q Consensus 75 ~~~~~~~iv~~c~~g~--ra~~~~~~l~~~G~~~v~~l~G 112 (137)
...+++-+++++.+|. ....++..+++.|.+ +..+.+
T Consensus 103 ~~~~~Dl~i~iS~sG~t~~~~~~~~~ak~~g~~-~I~iT~ 141 (188)
T PRK13937 103 LGRPGDVLIGISTSGNSPNVLAALEKARELGMK-TIGLTG 141 (188)
T ss_pred hCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCe-EEEEeC
Confidence 3567777888888886 466778889999986 655554
No 400
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=29.44 E-value=1.3e+02 Score=17.95 Aligned_cols=47 Identities=17% Similarity=0.193 Sum_probs=36.3
Q ss_pred hHHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHHCCccceeeccccH
Q 032621 66 PDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGH 114 (137)
Q Consensus 66 ~~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~ 114 (137)
+.+.+.+.+.+..+.++......+..+.....+|.+.| ++.-.+||+
T Consensus 21 ~~L~~~i~~~FG~~arFhTCSa~~m~a~~Li~FL~~kg--Kfi~~~~gf 67 (77)
T TIGR03853 21 ESLKAAIEQKFGEDARFHTCSAEGMTADELLQFLLKKG--KFIESDGGF 67 (77)
T ss_pred HHHHHHHHHHhCCCceEeecccccCCHHHHHHHHHHCC--CEeecCCcE
Confidence 46666776667777877777778899999999999998 366667765
No 401
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=29.33 E-value=1.6e+02 Score=22.22 Aligned_cols=65 Identities=15% Similarity=0.030 Sum_probs=35.4
Q ss_pred eCccccccCCCCCCCChHHHHHHHhhccCC---CcEEEEeCCCchHHHHHHHHHHCCccceeeccccH
Q 032621 50 FNIPYMFNTPEGRVKNPDFLKKVRSLCKEE---DRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGH 114 (137)
Q Consensus 50 inip~~~~~~~~~~~~~~~~~~~~~~~~~~---~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~ 114 (137)
+.+-.+.++|.+...+.-....+......+ ..-|+.+.+|..+..+|...+..|++=+.++....
T Consensus 18 i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~ 85 (316)
T cd06448 18 VFLKLENLQPSGSFKIRGIGHLCQKSAKQGLNECVHVVCSSGGNAGLAAAYAARKLGVPCTIVVPEST 85 (316)
T ss_pred EEEEeccCCCcCChHHHHHHHHHHHHHHhhcccCCeEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCC
Confidence 555555555555443322222333222222 33455566788888888888889997333444433
No 402
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.32 E-value=2.1e+02 Score=20.25 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=22.7
Q ss_pred eeeeCHHHHHHHhhCCCEEEecCChHH
Q 032621 12 VITVDVRAAKNLLESGYGYLDVRTAEE 38 (137)
Q Consensus 12 ~~~is~~~~~~~~~~~~~viDvR~~~e 38 (137)
+.-|+.+|..+.+..+.-+|||..+.|
T Consensus 5 vSPin~eEA~eAieGGAdIiDVKNP~E 31 (235)
T COG1891 5 VSPINREEAIEAIEGGADIIDVKNPAE 31 (235)
T ss_pred eccCCHHHHHHHhhCCCceEeccCccc
Confidence 345788999999998899999999865
No 403
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=29.30 E-value=1.9e+02 Score=20.39 Aligned_cols=36 Identities=17% Similarity=0.368 Sum_probs=23.4
Q ss_pred CchHHHHHHHHHHCCccceeeccccHHHHHhC-CCceec
Q 032621 89 GARSLHATADLLGAGFKHVSNFGGGHMAWVQN-GLKVKA 126 (137)
Q Consensus 89 g~ra~~~~~~l~~~G~~~v~~l~GG~~~w~~~-~~p~~~ 126 (137)
-......+..|.++||+ ++ -.+|...|.+. |.+++.
T Consensus 10 K~~l~~lAk~L~~lGf~-I~-AT~GTAk~L~e~GI~v~~ 46 (187)
T cd01421 10 KTGLVEFAKELVELGVE-IL-STGGTAKFLKEAGIPVTD 46 (187)
T ss_pred cccHHHHHHHHHHCCCE-EE-EccHHHHHHHHcCCeEEE
Confidence 34567778888888886 54 45566666544 666543
No 404
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=29.26 E-value=50 Score=23.30 Aligned_cols=19 Identities=26% Similarity=0.438 Sum_probs=14.0
Q ss_pred CCCcEEEEeCCCc-hHHHHH
Q 032621 78 EEDRLVVGCQSGA-RSLHAT 96 (137)
Q Consensus 78 ~~~~iv~~c~~g~-ra~~~~ 96 (137)
...+|+++|..|. ||..++
T Consensus 165 ~~~pivVHC~~G~gRsg~~~ 184 (231)
T cd00047 165 GSGPIVVHCSAGVGRTGTFI 184 (231)
T ss_pred CCCCeEEECCCCCCccchHH
Confidence 4679999999875 665543
No 405
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=29.14 E-value=1.4e+02 Score=23.24 Aligned_cols=33 Identities=15% Similarity=0.066 Sum_probs=26.8
Q ss_pred CcEEEEeCCCchHHHHHHHHHHCCccceeecccc
Q 032621 80 DRLVVGCQSGARSLHATADLLGAGFKHVSNFGGG 113 (137)
Q Consensus 80 ~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG 113 (137)
..-+++|..|..+...+..|.+.|++ +.+++--
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~-v~vid~~ 263 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYS-VKLIERD 263 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCe-EEEEECC
Confidence 45578888899999999999999986 7777544
No 406
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=29.14 E-value=1.5e+02 Score=22.37 Aligned_cols=49 Identities=31% Similarity=0.318 Sum_probs=32.3
Q ss_pred HHHHhhccCCCcEEEEeCCCchHHHHHHHHHHCCccceeeccccHHHHHhCCCc
Q 032621 70 KKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLK 123 (137)
Q Consensus 70 ~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~~~w~~~~~p 123 (137)
..+..++..+.+++++ |......+..+.+.||+ ..++.|+--++ ..|+|
T Consensus 8 ~~fR~l~~~~~~~~~p---g~~d~~sA~la~~aGF~-al~~sg~~vA~-slG~p 56 (289)
T COG2513 8 AAFRALHASGDPLVLP---GAWDAGSALLAERAGFK-ALYLSGAGVAA-SLGLP 56 (289)
T ss_pred HHHHHHHhCCCCEEec---CCcCHHHHHHHHHcCCe-EEEeccHHHHH-hcCCC
Confidence 3444444566777776 55666777888899998 66677655555 55655
No 407
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=29.12 E-value=1.8e+02 Score=20.36 Aligned_cols=41 Identities=12% Similarity=0.029 Sum_probs=25.0
Q ss_pred HHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHHCCcccee
Q 032621 68 FLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVS 108 (137)
Q Consensus 68 ~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~ 108 (137)
|.+.+...+..+.+|.+...+|.-|...+..+.+....++.
T Consensus 6 l~~av~~rl~~~~~i~~~LSGGlDSs~i~~~~~~~~~~~~~ 46 (255)
T PF00733_consen 6 LEEAVARRLRSDKPIGILLSGGLDSSAIAALAARQGGPPIK 46 (255)
T ss_dssp HHHHHHHHCGCTSEEEEE--SSHHHHHHHHHHHHTCCSEEE
T ss_pred HHHHHHHHHhcCCCEEEECCCChhHHHHHHHHHHhhCCcee
Confidence 44445444567778877777888888888777773323344
No 408
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=28.96 E-value=1.4e+02 Score=22.07 Aligned_cols=44 Identities=16% Similarity=0.157 Sum_probs=31.3
Q ss_pred hHHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHHCCcc-ceee
Q 032621 66 PDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFK-HVSN 109 (137)
Q Consensus 66 ~~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~~G~~-~v~~ 109 (137)
.+|...+.++...+..+|+++..+..+..+...+++.|+. .+.+
T Consensus 177 ~d~~~~v~~l~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~~~ 221 (334)
T cd06327 177 SDFSSYLLQAQASGADVLVLANAGADTVNAIKQAAEFGLTKGQKL 221 (334)
T ss_pred ccHHHHHHHHHhCCCCEEEEeccchhHHHHHHHHHHhCCccCCcE
Confidence 3566666665445556888888888888888899999984 3433
No 409
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=28.79 E-value=1.5e+02 Score=18.29 Aligned_cols=31 Identities=23% Similarity=0.433 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHCCccceeeccccHHHHHh-CCCc
Q 032621 91 RSLHATADLLGAGFKHVSNFGGGHMAWVQ-NGLK 123 (137)
Q Consensus 91 ra~~~~~~l~~~G~~~v~~l~GG~~~w~~-~~~p 123 (137)
.....+..|.+.||+ ++.-.| ...|.+ .|.+
T Consensus 14 ~~~~~~~~l~~~G~~-l~aT~g-T~~~l~~~gi~ 45 (110)
T cd01424 14 EAVEIAKRLAELGFK-LVATEG-TAKYLQEAGIP 45 (110)
T ss_pred HHHHHHHHHHHCCCE-EEEchH-HHHHHHHcCCe
Confidence 445556666667775 554443 333333 3444
No 410
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=28.73 E-value=1.6e+02 Score=20.85 Aligned_cols=38 Identities=16% Similarity=0.078 Sum_probs=25.9
Q ss_pred HHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHHCCcc
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFK 105 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~~G~~ 105 (137)
.+.+.+.....++++|++.|..+.| ......|.+.|++
T Consensus 106 ~L~~~~~~~~~~~~~vL~~rg~~~r-~~l~~~L~~~G~~ 143 (240)
T PRK09189 106 RLAETVAAALAPTARLLYLAGRPRA-PVFEDRLAAAGIP 143 (240)
T ss_pred HHHHHHHHhcCCCCcEEEeccCccc-chhHHHHHhCCCe
Confidence 4455444333467888888876555 6788889988864
No 411
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=28.71 E-value=1.7e+02 Score=21.67 Aligned_cols=45 Identities=13% Similarity=0.144 Sum_probs=29.8
Q ss_pred hHHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHHCCccceeec
Q 032621 66 PDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNF 110 (137)
Q Consensus 66 ~~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l 110 (137)
.++...+..+...+..+|+++..+..+......+++.|+...+++
T Consensus 204 ~d~~~~l~~l~~~~~~vvv~~~~~~~~~~~~~~a~~~g~~~~~~i 248 (348)
T cd06350 204 EDIKRILKKLKSSTARVIVVFGDEDDALRLFCEAYKLGMTGKYWI 248 (348)
T ss_pred HHHHHHHHHHHhCCCcEEEEEeCcHHHHHHHHHHHHhCCCCeEEE
Confidence 356666665534444677777667778888888999998434433
No 412
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=28.65 E-value=1.6e+02 Score=24.71 Aligned_cols=29 Identities=14% Similarity=0.303 Sum_probs=22.6
Q ss_pred HHHHHHHHHHCCccceeeccccHHHHHhCC
Q 032621 92 SLHATADLLGAGFKHVSNFGGGHMAWVQNG 121 (137)
Q Consensus 92 a~~~~~~l~~~G~~~v~~l~GG~~~w~~~~ 121 (137)
+...|.+++++|++ |..+......|.++.
T Consensus 313 g~tiAEYfRD~G~~-Vll~~DS~tR~AeAl 341 (591)
T TIGR01042 313 GITLAEYFRDMGYN-VSMMADSTSRWAEAL 341 (591)
T ss_pred HHHHHHHHHhcCCC-EEEEecChHHHHHHH
Confidence 45567889999985 888777899997654
No 413
>PRK12403 putative aminotransferase; Provisional
Probab=28.59 E-value=1.2e+02 Score=24.30 Aligned_cols=55 Identities=11% Similarity=-0.027 Sum_probs=33.3
Q ss_pred HHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHH-C----Ccc---ceeeccccHHHHHhCC
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLG-A----GFK---HVSNFGGGHMAWVQNG 121 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~-~----G~~---~v~~l~GG~~~w~~~~ 121 (137)
++.+++.+..+.+..-+++|++|..|-.+|-.+.. + |-+ .+....+||.+|...+
T Consensus 102 ~lae~L~~~~p~~~~~v~f~~SGseA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~ 164 (460)
T PRK12403 102 ELSELLFSLLPGHYSHAIYTNSGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAA 164 (460)
T ss_pred HHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhh
Confidence 56666666544333467888999988777665543 2 422 2335567777775443
No 414
>PRK07476 eutB threonine dehydratase; Provisional
Probab=28.48 E-value=1.5e+02 Score=22.30 Aligned_cols=56 Identities=20% Similarity=0.167 Sum_probs=32.4
Q ss_pred eCccccccCCCCCCCChHHHHHHHhhccCC-CcEEEEeCCCchHHHHHHHHHHCCcc
Q 032621 50 FNIPYMFNTPEGRVKNPDFLKKVRSLCKEE-DRLVVGCQSGARSLHATADLLGAGFK 105 (137)
Q Consensus 50 inip~~~~~~~~~~~~~~~~~~~~~~~~~~-~~iv~~c~~g~ra~~~~~~l~~~G~~ 105 (137)
+.+..+.+++.+.+...-....+......+ +.-|+.+.+|..+..++...+..|++
T Consensus 36 l~~K~E~~nptGS~K~R~a~~~i~~a~~~~~~~gvv~aSsGN~g~alA~~a~~~G~~ 92 (322)
T PRK07476 36 VWLKLETLQPTGSFKLRGATNALLSLSAQERARGVVTASTGNHGRALAYAARALGIR 92 (322)
T ss_pred EEEEEccCCCCCCchHHHHHHHHHhhhhhhhCCeEEEECCChHHHHHHHHHHHhCCC
Confidence 666666666666554332222233222222 22144446788888888888889987
No 415
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=28.38 E-value=1.8e+02 Score=21.28 Aligned_cols=20 Identities=20% Similarity=0.174 Sum_probs=12.2
Q ss_pred CEEEecCChHHHhccCCCCc
Q 032621 28 YGYLDVRTAEEFKEGHVDAA 47 (137)
Q Consensus 28 ~~viDvR~~~e~~~g~ipga 47 (137)
.++||+...-.-....+|||
T Consensus 9 gvLlDlSGtLh~e~~avpga 28 (262)
T KOG3040|consen 9 GVLLDLSGTLHIEDAAVPGA 28 (262)
T ss_pred eEEEeccceEecccccCCCH
Confidence 57888886433333456666
No 416
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=28.30 E-value=2.1e+02 Score=23.11 Aligned_cols=30 Identities=17% Similarity=0.078 Sum_probs=21.9
Q ss_pred HHHHHHHHH-HCCccceeeccccHHHHHhCCC
Q 032621 92 SLHATADLL-GAGFKHVSNFGGGHMAWVQNGL 122 (137)
Q Consensus 92 a~~~~~~l~-~~G~~~v~~l~GG~~~w~~~~~ 122 (137)
+...|.+++ +.|.+ |.++-..+..|.++..
T Consensus 227 a~tiAEyfr~d~G~~-VLli~DslTR~A~A~R 257 (460)
T PRK04196 227 ALTAAEYLAFEKGMH-VLVILTDMTNYCEALR 257 (460)
T ss_pred HHHHHHHHHHhcCCc-EEEEEcChHHHHHHHH
Confidence 556678888 69985 8776668888876643
No 417
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=28.27 E-value=95 Score=25.87 Aligned_cols=32 Identities=9% Similarity=0.287 Sum_probs=24.9
Q ss_pred HHHHHHHHHHCCccceeeccccHHHHHhCCCce
Q 032621 92 SLHATADLLGAGFKHVSNFGGGHMAWVQNGLKV 124 (137)
Q Consensus 92 a~~~~~~l~~~G~~~v~~l~GG~~~w~~~~~p~ 124 (137)
+...|.+++++|++ |.++......|.++..++
T Consensus 307 g~TiAEYfRD~G~~-Vllm~DS~sR~AeAlREI 338 (578)
T TIGR01043 307 GITIAEYFRDMGYD-VALMADSTSRWAEAMREI 338 (578)
T ss_pred HHHHHHHHHHCCCC-EEEEecChhHHHHHHHHH
Confidence 45678889999985 888888999998765443
No 418
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=28.26 E-value=1.1e+02 Score=20.67 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=15.9
Q ss_pred HHHHHHHHHHCCccceeecccc
Q 032621 92 SLHATADLLGAGFKHVSNFGGG 113 (137)
Q Consensus 92 a~~~~~~l~~~G~~~v~~l~GG 113 (137)
|..+...|...|+. +++|+|.
T Consensus 19 A~~L~~~L~~~g~~-~~~LDgD 39 (156)
T PF01583_consen 19 ARALERRLFARGIK-VYLLDGD 39 (156)
T ss_dssp HHHHHHHHHHTTS--EEEEEHH
T ss_pred HHHHHHHHHHcCCc-EEEecCc
Confidence 56667778889975 9999984
No 419
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=28.22 E-value=1e+02 Score=21.54 Aligned_cols=30 Identities=27% Similarity=0.269 Sum_probs=26.3
Q ss_pred ccCCCcEEEEeC---CCchHHHHHHHHHHCCcc
Q 032621 76 CKEEDRLVVGCQ---SGARSLHATADLLGAGFK 105 (137)
Q Consensus 76 ~~~~~~iv~~c~---~g~ra~~~~~~l~~~G~~ 105 (137)
+.++++++++++ +|.....+...+++.|-+
T Consensus 114 i~~G~rVlIVDDviaTGgT~~a~~~lv~~aGa~ 146 (189)
T PRK09219 114 LSEGDRVLIIDDFLANGQAALGLIDIIEQAGAK 146 (189)
T ss_pred CCCCCEEEEEeehhhcChHHHHHHHHHHHCCCE
Confidence 468999999998 788889999999999975
No 420
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=28.21 E-value=80 Score=21.08 Aligned_cols=26 Identities=19% Similarity=0.279 Sum_probs=18.1
Q ss_pred ccCCCcEEEEeCCCchHHHHHHHHHH
Q 032621 76 CKEEDRLVVGCQSGARSLHATADLLG 101 (137)
Q Consensus 76 ~~~~~~iv~~c~~g~ra~~~~~~l~~ 101 (137)
+..+++|++.|.+...+......+.+
T Consensus 119 iAGdDTilii~~~~~~a~~~~~~l~~ 144 (146)
T TIGR01529 119 IAGDDTILVICRDPETAELLMERLLE 144 (146)
T ss_pred EecCCEEEEEECCHHHHHHHHHHHHH
Confidence 34567788888877777777666654
No 421
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=28.18 E-value=1e+02 Score=21.41 Aligned_cols=31 Identities=19% Similarity=0.177 Sum_probs=25.7
Q ss_pred CCCcEEEEeC---CCchHHHHHHHHHHCCcccee
Q 032621 78 EEDRLVVGCQ---SGARSLHATADLLGAGFKHVS 108 (137)
Q Consensus 78 ~~~~iv~~c~---~g~ra~~~~~~l~~~G~~~v~ 108 (137)
+++.|+++++ +|.....+...|+..|...+.
T Consensus 96 ~gk~VliVDDIidTG~Tl~~~~~~l~~~g~~~v~ 129 (189)
T PLN02238 96 KGKHVLLVEDIVDTGNTLSALVAHLEAKGAASVS 129 (189)
T ss_pred CCCEEEEEecccchHHHHHHHHHHHHhCCCCEEE
Confidence 6788999988 788888888999999987654
No 422
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=28.15 E-value=1.1e+02 Score=21.09 Aligned_cols=30 Identities=27% Similarity=0.289 Sum_probs=26.6
Q ss_pred ccCCCcEEEEeC---CCchHHHHHHHHHHCCcc
Q 032621 76 CKEEDRLVVGCQ---SGARSLHATADLLGAGFK 105 (137)
Q Consensus 76 ~~~~~~iv~~c~---~g~ra~~~~~~l~~~G~~ 105 (137)
+.++++++++++ +|..+......+.+.|.+
T Consensus 113 l~~G~rVlIVDDllaTGgT~~a~~~Ll~~~ga~ 145 (179)
T COG0503 113 LKPGDRVLIVDDLLATGGTALALIELLEQAGAE 145 (179)
T ss_pred CCCCCEEEEEecchhcChHHHHHHHHHHHCCCE
Confidence 457899999998 788999999999999986
No 423
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=28.13 E-value=95 Score=26.54 Aligned_cols=38 Identities=13% Similarity=0.038 Sum_probs=29.0
Q ss_pred cCCCcEEEEeCCC-c---hHHHHHHHHHHCCccceeeccccH
Q 032621 77 KEEDRLVVGCQSG-A---RSLHATADLLGAGFKHVSNFGGGH 114 (137)
Q Consensus 77 ~~~~~iv~~c~~g-~---ra~~~~~~l~~~G~~~v~~l~GG~ 114 (137)
..+..+|++|... . ....+...|++.|.+++.++.||.
T Consensus 631 ~~~a~ivvlcs~d~~~~e~~~~l~~~Lk~~G~~~v~vl~GG~ 672 (714)
T PRK09426 631 ENDVHVVGVSSLAAGHKTLVPALIEALKKLGREDIMVVVGGV 672 (714)
T ss_pred HcCCCEEEEeccchhhHHHHHHHHHHHHhcCCCCcEEEEeCC
Confidence 3566789999743 2 467778889999988898888874
No 424
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=28.08 E-value=2.1e+02 Score=21.27 Aligned_cols=45 Identities=13% Similarity=0.060 Sum_probs=27.6
Q ss_pred HHHHHHHhh-c-cCCCcEEEEeCCCchHHHHHHHHHHCCccceeeccc
Q 032621 67 DFLKKVRSL-C-KEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGG 112 (137)
Q Consensus 67 ~~~~~~~~~-~-~~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~G 112 (137)
-|...+... . ..+++++++ ..|..+..++..|.+.|..++++++-
T Consensus 113 Gf~~~L~~~~~~~~~k~vlil-GaGGaarAi~~aL~~~g~~~i~i~nR 159 (283)
T PRK14027 113 GFGRGMEEGLPNAKLDSVVQV-GAGGVGNAVAYALVTHGVQKLQVADL 159 (283)
T ss_pred HHHHHHHhcCcCcCCCeEEEE-CCcHHHHHHHHHHHHCCCCEEEEEcC
Confidence 355555432 1 234556555 44666666777788899988887764
No 425
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=28.08 E-value=1.3e+02 Score=20.96 Aligned_cols=50 Identities=24% Similarity=0.195 Sum_probs=34.3
Q ss_pred ccCCCcEEEEeC---CCchHHHHHHHHHHCCccc--ee-ecc---ccHHHHHhCCCcee
Q 032621 76 CKEEDRLVVGCQ---SGARSLHATADLLGAGFKH--VS-NFG---GGHMAWVQNGLKVK 125 (137)
Q Consensus 76 ~~~~~~iv~~c~---~g~ra~~~~~~l~~~G~~~--v~-~l~---GG~~~w~~~~~p~~ 125 (137)
+.++++|+++++ +|.....+...+++.|.+- +. +++ ||-......|.|+.
T Consensus 119 ~~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga~V~~v~vlvdr~~g~~~~l~~~gi~~~ 177 (187)
T PRK13810 119 LKPEDRIVMLEDVTTSGGSVREAIEVVREAGAYIKYVITVVDREEGAEENLKEADVELV 177 (187)
T ss_pred CCCcCEEEEEEeccCCChHHHHHHHHHHHCCCEEEEEEEEEECCcChHHHHHHcCCcEE
Confidence 568899999998 7888999999999999752 11 233 33344444565554
No 426
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=27.95 E-value=2.1e+02 Score=21.03 Aligned_cols=35 Identities=14% Similarity=0.165 Sum_probs=25.1
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHCCccceeeccccH
Q 032621 79 EDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGH 114 (137)
Q Consensus 79 ~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~ 114 (137)
++.++ +...|.-+..++..|...|+.+|+++.--.
T Consensus 123 ~k~vl-VlGaGg~a~ai~~aL~~~g~~~V~v~~R~~ 157 (278)
T PRK00258 123 GKRIL-ILGAGGAARAVILPLLDLGVAEITIVNRTV 157 (278)
T ss_pred CCEEE-EEcCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 34444 445688888888899999987788776543
No 427
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=27.91 E-value=1.3e+02 Score=18.36 Aligned_cols=28 Identities=21% Similarity=0.171 Sum_probs=20.4
Q ss_pred CCCcEEEEeC------CCchHHHHHHHHHHCCcc
Q 032621 78 EEDRLVVGCQ------SGARSLHATADLLGAGFK 105 (137)
Q Consensus 78 ~~~~iv~~c~------~g~ra~~~~~~l~~~G~~ 105 (137)
.+.+||+|.. .+-.+..+-..|.+.|++
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~ 43 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKACGVP 43 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCC
Confidence 4467888854 355788888888888875
No 428
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=27.89 E-value=2e+02 Score=21.59 Aligned_cols=32 Identities=13% Similarity=0.020 Sum_probs=20.8
Q ss_pred HHHHHHHHHHC-CccceeeccccHHHHHhCCCce
Q 032621 92 SLHATADLLGA-GFKHVSNFGGGHMAWVQNGLKV 124 (137)
Q Consensus 92 a~~~~~~l~~~-G~~~v~~l~GG~~~w~~~~~p~ 124 (137)
+...|++++.. |.+ |.++-..+..|.++..++
T Consensus 153 a~aiAEyfrd~~g~~-VLl~~D~ltr~A~A~rEi 185 (276)
T cd01135 153 ALTTAEYLAYEKGKH-VLVILTDMTNYAEALREI 185 (276)
T ss_pred HHHHHHHHHhccCCe-EEEEEcChhHHHHHHHHH
Confidence 45567778876 875 766655687776654433
No 429
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=27.87 E-value=72 Score=25.25 Aligned_cols=39 Identities=21% Similarity=0.101 Sum_probs=28.2
Q ss_pred cEEEEeCCCch----------HHHHHHHHHHCCccceeeccccHHHHHhC
Q 032621 81 RLVVGCQSGAR----------SLHATADLLGAGFKHVSNFGGGHMAWVQN 120 (137)
Q Consensus 81 ~iv~~c~~g~r----------a~~~~~~l~~~G~~~v~~l~GG~~~w~~~ 120 (137)
++.+||.-.-. .......|.+.|++ +.+|-||+.+|...
T Consensus 32 ~~~~Y~GfDPTa~slHlGhlv~l~kL~~fQ~aGh~-~ivLigd~ta~IgD 80 (401)
T COG0162 32 PLRVYIGFDPTAPSLHLGHLVPLMKLRRFQDAGHK-PIVLIGDATAMIGD 80 (401)
T ss_pred CceEEEeeCCCCCccchhhHHHHHHHHHHHHCCCe-EEEEecccceecCC
Confidence 88888873221 23445668889997 99999999998554
No 430
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=27.86 E-value=1.3e+02 Score=25.03 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=31.1
Q ss_pred HHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHHCCccceeecc
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFG 111 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~ 111 (137)
...+.+.+ .+..++|.|+-|..+......+++.|.+ |.+.|
T Consensus 118 ~~i~~~~~---~~~~LiItvD~Gi~~~e~i~~a~~~gid-vIVtD 158 (575)
T PRK11070 118 EVVDQAHA---RGAQLIVTVDNGISSHAGVAHAHALGIP-VLVTD 158 (575)
T ss_pred HHHHHHHh---cCCCEEEEEcCCcCCHHHHHHHHHCCCC-EEEEC
Confidence 44455543 3556999999999999999999999986 65555
No 431
>PRK13938 phosphoheptose isomerase; Provisional
Probab=27.78 E-value=2.2e+02 Score=19.97 Aligned_cols=43 Identities=21% Similarity=0.257 Sum_probs=29.8
Q ss_pred HHHHHhhccCCCcEEEEeCCCch--HHHHHHHHHHCCccceeeccc
Q 032621 69 LKKVRSLCKEEDRLVVGCQSGAR--SLHATADLLGAGFKHVSNFGG 112 (137)
Q Consensus 69 ~~~~~~~~~~~~~iv~~c~~g~r--a~~~~~~l~~~G~~~v~~l~G 112 (137)
...+.....+++-+++++.+|.. -..++..+++.|.+ +..+.+
T Consensus 104 ~~~~~~~~~~~DllI~iS~SG~t~~vi~a~~~Ak~~G~~-vI~iT~ 148 (196)
T PRK13938 104 ARALEGSARPGDTLFAISTSGNSMSVLRAAKTARELGVT-VVAMTG 148 (196)
T ss_pred HHHHHhcCCCCCEEEEEcCCCCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence 33444446777878888888863 45677788999987 655554
No 432
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=27.74 E-value=1.2e+02 Score=20.70 Aligned_cols=30 Identities=23% Similarity=0.251 Sum_probs=24.5
Q ss_pred CCCcEEEEeC---CCchHHHHHHHHHHCC-ccce
Q 032621 78 EEDRLVVGCQ---SGARSLHATADLLGAG-FKHV 107 (137)
Q Consensus 78 ~~~~iv~~c~---~g~ra~~~~~~l~~~G-~~~v 107 (137)
.++.++++++ +|.....+...|++.| -.++
T Consensus 94 ~gr~VLIVDDIidTG~Tl~~~~~~L~~~G~~~~v 127 (176)
T PRK05205 94 EGKRVILVDDVLYTGRTIRAALDALFDYGRPARV 127 (176)
T ss_pred CCCEEEEEecccCcHHHHHHHHHHHHhcCCCcEE
Confidence 5677999887 7889999999999998 3444
No 433
>PRK12829 short chain dehydrogenase; Provisional
Probab=27.71 E-value=1.2e+02 Score=21.39 Aligned_cols=33 Identities=15% Similarity=0.120 Sum_probs=23.7
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHHCCccceeecc
Q 032621 78 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFG 111 (137)
Q Consensus 78 ~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~ 111 (137)
+++.++|...+|.-...++..|.+.|++ |..+.
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~g~~-V~~~~ 42 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEAGAR-VHVCD 42 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCCE-EEEEe
Confidence 4567777777777777777888888875 66554
No 434
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=27.69 E-value=99 Score=21.48 Aligned_cols=40 Identities=10% Similarity=0.124 Sum_probs=32.9
Q ss_pred cCCCcEEEEeCCCchHHHHHHHHHHCCccceeeccccHHH
Q 032621 77 KEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMA 116 (137)
Q Consensus 77 ~~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~~~ 116 (137)
.++..++++...+.++.-.-.....+|.+||.++.+=...
T Consensus 70 ~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~ 109 (184)
T PF02527_consen 70 RPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE 109 (184)
T ss_dssp -TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH
T ss_pred CCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc
Confidence 4677799999999999999999999999999999886666
No 435
>PLN02565 cysteine synthase
Probab=27.64 E-value=2.7e+02 Score=21.06 Aligned_cols=66 Identities=12% Similarity=0.114 Sum_probs=41.1
Q ss_pred eCccccccCCCCCCCChHHHHHHHhh-----ccCCCcEEEEeCCCchHHHHHHHHHHCCccceeeccccHH
Q 032621 50 FNIPYMFNTPEGRVKNPDFLKKVRSL-----CKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM 115 (137)
Q Consensus 50 inip~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~~ 115 (137)
+.+-.+.++|.+.+.+.-....+... +.++...|+-+.+|..+..+|+..+.+|++-+.++..+..
T Consensus 32 i~~K~E~~nPtGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~ 102 (322)
T PLN02565 32 IAAKLEMMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPASMS 102 (322)
T ss_pred EEEEecccCCccchHHHHHHHHHHHHHHcCCCCCCCcEEEEECCChHHHHHHHHHHHcCCeEEEEeCCCCc
Confidence 77777778888866543222222222 2334344555567888989999999999974445555543
No 436
>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=27.61 E-value=1.3e+02 Score=24.13 Aligned_cols=54 Identities=7% Similarity=0.055 Sum_probs=34.0
Q ss_pred HHHHHHHhhccC-----CCcEEEEeCCCchHHHHHHHHHH-C----C---ccceeeccccHHHHHhC
Q 032621 67 DFLKKVRSLCKE-----EDRLVVGCQSGARSLHATADLLG-A----G---FKHVSNFGGGHMAWVQN 120 (137)
Q Consensus 67 ~~~~~~~~~~~~-----~~~iv~~c~~g~ra~~~~~~l~~-~----G---~~~v~~l~GG~~~w~~~ 120 (137)
++.+.+.+..+. +-.-|++|++|..|-.+|-.|.. . | -.+|..+.++|.+|...
T Consensus 111 ~lae~L~~~~p~~~~~~~~~~v~f~~sGSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~g 177 (472)
T PRK08742 111 QLAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIG 177 (472)
T ss_pred HHHHHHHHhCCCcccCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchh
Confidence 455666555322 22368899999887777665543 1 3 34577888888877543
No 437
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=27.55 E-value=1.7e+02 Score=22.74 Aligned_cols=41 Identities=17% Similarity=0.118 Sum_probs=30.3
Q ss_pred HHHHHhhccCCCcEEEEeCCCchHHHHHHHHHHCCccceeecc
Q 032621 69 LKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFG 111 (137)
Q Consensus 69 ~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~ 111 (137)
...+-..+.+++.++++. .|..+.+++..++.+|++ |.++.
T Consensus 82 E~al~N~lePgd~vLv~~-~G~wg~ra~D~~~r~ga~-V~~v~ 122 (385)
T KOG2862|consen 82 EAALVNLLEPGDNVLVVS-TGTWGQRAADCARRYGAE-VDVVE 122 (385)
T ss_pred HHHHHhhcCCCCeEEEEE-echHHHHHHHHHHhhCce-eeEEe
Confidence 334444467888777664 689999999999999996 76664
No 438
>PHA03169 hypothetical protein; Provisional
Probab=27.53 E-value=80 Score=24.76 Aligned_cols=43 Identities=14% Similarity=0.224 Sum_probs=26.2
Q ss_pred cEEEEeCCCchHHH--HHHHHHHCCccceeeccccHHHHHhCCCce
Q 032621 81 RLVVGCQSGARSLH--ATADLLGAGFKHVSNFGGGHMAWVQNGLKV 124 (137)
Q Consensus 81 ~iv~~c~~g~ra~~--~~~~l~~~G~~~v~~l~GG~~~w~~~~~p~ 124 (137)
-|.+||++-..+.. .++.+.+.-|.....|.-.+..+ ..++|+
T Consensus 368 ~ItVyCqsk~TaK~V~kaq~~yE~~yp~a~~L~aSl~k~-~~glPi 412 (413)
T PHA03169 368 CITVFCQSRGTAKAVIKAQKKYEKKYPRSAHLKASLVRM-SRGLPI 412 (413)
T ss_pred EEEEEecCcccHHHHHHHHHHHHhhCCcchhhhhhhhcc-cCCCCC
Confidence 38999998665544 45566667776665666555443 334443
No 439
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=27.51 E-value=1.5e+02 Score=17.97 Aligned_cols=33 Identities=27% Similarity=0.259 Sum_probs=25.6
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHCCccceeeccc
Q 032621 79 EDRLVVGCQSGARSLHATADLLGAGFKHVSNFGG 112 (137)
Q Consensus 79 ~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~G 112 (137)
.-+|++-|..|.-+..+...|..+|.+ +..+..
T Consensus 21 ~~kivvD~~~G~~~~~~~~ll~~lg~~-~~~~n~ 53 (104)
T PF02879_consen 21 GLKIVVDCMNGAGSDILPRLLERLGCD-VIELNC 53 (104)
T ss_dssp TCEEEEE-TTSTTHHHHHHHHHHTTCE-EEEESS
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCc-EEEEec
Confidence 347899899999999999999999996 444543
No 440
>PRK06608 threonine dehydratase; Provisional
Probab=27.48 E-value=2.1e+02 Score=21.84 Aligned_cols=67 Identities=12% Similarity=0.011 Sum_probs=39.7
Q ss_pred eCccccccCCCCCCCChHHHHHHHhhccCCC--cEEEEeCCCchHHHHHHHHHHCCccceeeccccHHH
Q 032621 50 FNIPYMFNTPEGRVKNPDFLKKVRSLCKEED--RLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMA 116 (137)
Q Consensus 50 inip~~~~~~~~~~~~~~~~~~~~~~~~~~~--~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~~~ 116 (137)
+.+-.+.+++.+.+...-....+......+. ..|+-+.+|..+..++...+.+|++-+.++..+...
T Consensus 40 l~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~~vv~~SsGN~g~alA~~a~~~G~~~~vv~p~~~~~ 108 (338)
T PRK06608 40 IFFKVESLQKTGAFKVRGVLNHLLELKEQGKLPDKIVAYSTGNHGQAVAYASKLFGIKTRIYLPLNTSK 108 (338)
T ss_pred EEEEeCCCCCCCCcHHHHHHHHHHHhhhhcCcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCH
Confidence 6666666666665533222223333322222 345666788899999999999999844456555443
No 441
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase. This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.
Probab=27.44 E-value=1.1e+02 Score=23.75 Aligned_cols=51 Identities=18% Similarity=0.156 Sum_probs=33.6
Q ss_pred HHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHH--CCccceeeccccHHHHH
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLG--AGFKHVSNFGGGHMAWV 118 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~--~G~~~v~~l~GG~~~w~ 118 (137)
++.+.+.+..+.. .-|++|++|..|..++-.+.. .|-++|..+.++|.+|.
T Consensus 92 ~lae~l~~~~~~~-~~v~~~~sGseA~e~Alk~ar~~~gr~~ii~~~~~yhG~~ 144 (423)
T TIGR00713 92 LLAKEIISRVPSV-EMVRFVNSGTEATMSAVRLARGYTGRDKIIKFEGCYHGHH 144 (423)
T ss_pred HHHHHHHHhCCcc-cEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcCCCCCCh
Confidence 5666666653332 347789999988777766543 35566777788777764
No 442
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=27.36 E-value=79 Score=23.16 Aligned_cols=45 Identities=11% Similarity=0.151 Sum_probs=34.9
Q ss_pred HHHHHHHhhc-cCCCcEEEEeCCCchHHHHHHHHHHCCccceeecc
Q 032621 67 DFLKKVRSLC-KEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFG 111 (137)
Q Consensus 67 ~~~~~~~~~~-~~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~ 111 (137)
+....+...+ .++..|.+|+..=.+.......|++.||.++..++
T Consensus 126 ~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~i~~~E 171 (247)
T PF08704_consen 126 EAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTDIETVE 171 (247)
T ss_dssp GGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCeeeEEEE
Confidence 4555666666 67888999999877899999999999997665444
No 443
>PF15494 SRCR_2: Scavenger receptor cysteine-rich domain
Probab=27.22 E-value=1e+02 Score=18.76 Aligned_cols=28 Identities=11% Similarity=0.146 Sum_probs=24.5
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHCCccc
Q 032621 79 EDRLVVGCQSGARSLHATADLLGAGFKH 106 (137)
Q Consensus 79 ~~~iv~~c~~g~ra~~~~~~l~~~G~~~ 106 (137)
.....-+|..++....+....+++||.+
T Consensus 13 ~~~W~~VC~d~W~~~~s~~~C~qLGy~~ 40 (98)
T PF15494_consen 13 SGSWLPVCSDNWNEALSKAACQQLGYSS 40 (98)
T ss_pred CCCEeeecccccCHHHHHHHHHHhCCCC
Confidence 4568899999999999999999999964
No 444
>PRK02106 choline dehydrogenase; Validated
Probab=27.14 E-value=95 Score=25.32 Aligned_cols=30 Identities=13% Similarity=0.087 Sum_probs=24.0
Q ss_pred EEEeCCCchHHHHHHHHHH-CCccceeecccc
Q 032621 83 VVGCQSGARSLHATADLLG-AGFKHVSNFGGG 113 (137)
Q Consensus 83 v~~c~~g~ra~~~~~~l~~-~G~~~v~~l~GG 113 (137)
+|+..+|.-...+|..|.+ .|++ |.+|+.|
T Consensus 8 ~iIVG~G~aG~vvA~rLae~~g~~-VlvlEaG 38 (560)
T PRK02106 8 YIIIGAGSAGCVLANRLSEDPDVS-VLLLEAG 38 (560)
T ss_pred EEEECCcHHHHHHHHHHHhCCCCe-EEEecCC
Confidence 3455778888888999999 7886 9899877
No 445
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=26.95 E-value=2e+02 Score=23.21 Aligned_cols=31 Identities=13% Similarity=0.019 Sum_probs=22.2
Q ss_pred HHHHHHHHH-HCCccceeeccccHHHHHhCCCc
Q 032621 92 SLHATADLL-GAGFKHVSNFGGGHMAWVQNGLK 123 (137)
Q Consensus 92 a~~~~~~l~-~~G~~~v~~l~GG~~~w~~~~~p 123 (137)
+...|.+++ +.|.+ |.++-..+..|.++..+
T Consensus 225 a~tiAEyfr~d~G~~-VLli~DslTR~A~A~RE 256 (458)
T TIGR01041 225 ALTAAEYLAFEKDMH-VLVILTDMTNYCEALRE 256 (458)
T ss_pred HHHHHHHHHHccCCc-EEEEEcChhHHHHHHHH
Confidence 455678888 69985 87777688888766433
No 446
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=26.95 E-value=1.1e+02 Score=24.43 Aligned_cols=50 Identities=14% Similarity=0.098 Sum_probs=35.6
Q ss_pred HHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHH--CCccceeeccccHHHH
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLG--AGFKHVSNFGGGHMAW 117 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~--~G~~~v~~l~GG~~~w 117 (137)
++.+.+.+. -+.-+.|-+|++|..|...+-+|.. -|-+.|..++|.|.++
T Consensus 97 ~~Aell~~~-~p~~e~vrfvnSGTEAtmsAiRlARa~TgR~kIikF~G~YHG~ 148 (432)
T COG0001 97 ELAELLIER-VPSIEKVRFVNSGTEATMSAIRLARAYTGRDKIIKFEGCYHGH 148 (432)
T ss_pred HHHHHHHHh-cCcccEEEEecchhHHHHHHHHHHHHhhCCCeEEEEcCCCCCC
Confidence 344444444 3455678899999999888888876 4777888888877654
No 447
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=26.94 E-value=1.3e+02 Score=20.69 Aligned_cols=26 Identities=8% Similarity=0.097 Sum_probs=17.2
Q ss_pred CcEEEEeCCCchHHHHHHHHHHCCcc
Q 032621 80 DRLVVGCQSGARSLHATADLLGAGFK 105 (137)
Q Consensus 80 ~~iv~~c~~g~ra~~~~~~l~~~G~~ 105 (137)
++|+++++.+......+.+|++.|++
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~ 27 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVP 27 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCc
Confidence 35667777666666677777777764
No 448
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=26.87 E-value=1.8e+02 Score=20.95 Aligned_cols=41 Identities=17% Similarity=0.125 Sum_probs=29.7
Q ss_pred HHHhhccCCCcEEEEeCCCchHHHHHHHHHHCCccc-eeecc
Q 032621 71 KVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKH-VSNFG 111 (137)
Q Consensus 71 ~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~~G~~~-v~~l~ 111 (137)
++...++++.+|+.+.....++..+...+++.|+.+ |..+.
T Consensus 76 ~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~ 117 (219)
T COG4122 76 WMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLL 117 (219)
T ss_pred HHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEe
Confidence 333334556677777777889999999999999987 44444
No 449
>PRK05670 anthranilate synthase component II; Provisional
Probab=26.87 E-value=1.3e+02 Score=20.54 Aligned_cols=24 Identities=8% Similarity=-0.038 Sum_probs=14.4
Q ss_pred EEEEeCCCchHHHHHHHHHHCCcc
Q 032621 82 LVVGCQSGARSLHATADLLGAGFK 105 (137)
Q Consensus 82 iv~~c~~g~ra~~~~~~l~~~G~~ 105 (137)
|+++++........+++|.+.|++
T Consensus 2 iliid~~d~f~~~i~~~l~~~g~~ 25 (189)
T PRK05670 2 ILLIDNYDSFTYNLVQYLGELGAE 25 (189)
T ss_pred EEEEECCCchHHHHHHHHHHCCCc
Confidence 555555555666666666666654
No 450
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=26.77 E-value=1.4e+02 Score=21.04 Aligned_cols=38 Identities=24% Similarity=0.365 Sum_probs=26.1
Q ss_pred HHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHHCCc
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGF 104 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~~G~ 104 (137)
++...+.++......+|+.|..+..+..+...+++.|+
T Consensus 179 ~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~g~ 216 (299)
T cd04509 179 DFTSLLQKLKAAKPDVIVLCGSGEDAATILKQAAEAGL 216 (299)
T ss_pred cHHHHHHHHHhcCCCEEEEcccchHHHHHHHHHHHcCC
Confidence 34444444323345688888877888888889999988
No 451
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=26.62 E-value=1.2e+02 Score=24.80 Aligned_cols=29 Identities=28% Similarity=0.386 Sum_probs=23.4
Q ss_pred cEEEEeCCCchHHHHHHHHHHCCccceeecc
Q 032621 81 RLVVGCQSGARSLHATADLLGAGFKHVSNFG 111 (137)
Q Consensus 81 ~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~ 111 (137)
.|||+ ..|.....+|+.|.+.|++ |.+|+
T Consensus 17 ~VIVI-GAGiaGLsAArqL~~~G~~-V~VLE 45 (501)
T KOG0029|consen 17 KVIVI-GAGLAGLSAARQLQDFGFD-VLVLE 45 (501)
T ss_pred cEEEE-CCcHHHHHHHHHHHHcCCc-eEEEe
Confidence 34444 6688999999999999997 88876
No 452
>PRK08813 threonine dehydratase; Provisional
Probab=26.58 E-value=2.2e+02 Score=22.05 Aligned_cols=64 Identities=13% Similarity=0.086 Sum_probs=36.9
Q ss_pred eCccccccCCCCCCCChHHHHHHHhhccCCCc-EEEEeCCCchHHHHHHHHHHCCccceeecccc
Q 032621 50 FNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDR-LVVGCQSGARSLHATADLLGAGFKHVSNFGGG 113 (137)
Q Consensus 50 inip~~~~~~~~~~~~~~~~~~~~~~~~~~~~-iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG 113 (137)
+.+..+.+++.+.+...-....+......+.. -|+.+.+|..+..+|+..+.+|++-..++..+
T Consensus 50 v~lK~E~~nptGSfK~RgA~~~l~~a~~~~~~~~VV~aSsGN~G~alA~aa~~~Gi~~~IvvP~~ 114 (349)
T PRK08813 50 VWLKLENLQRTGSYKVRGALNALLAGLERGDERPVICASAGNHAQGVAWSAYRLGVQAITVMPHG 114 (349)
T ss_pred EEEEecCCCCcCCCHHHHHHHHHHHHHHcCCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 45555656666666433333333333222222 35566678899999999999999733344433
No 453
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=26.40 E-value=1.5e+02 Score=20.70 Aligned_cols=37 Identities=24% Similarity=0.054 Sum_probs=25.1
Q ss_pred cCCCcEEEEeCCC--chHHHHHHHHHHCCcc-ce---eecccc
Q 032621 77 KEEDRLVVGCQSG--ARSLHATADLLGAGFK-HV---SNFGGG 113 (137)
Q Consensus 77 ~~~~~iv~~c~~g--~ra~~~~~~l~~~G~~-~v---~~l~GG 113 (137)
.+.--|.+||..| ...+.....++..|+- +| .++.|+
T Consensus 19 ~~~Gli~VYtGdGKGKTTAAlGlalRAaG~G~rV~iiQFlKg~ 61 (178)
T PRK07414 19 TIEGLVQVFTSSQRNFFTSVMAQALRIAGQGTPVLIVQFLKGG 61 (178)
T ss_pred CCCCEEEEEeCCCCCchHHHHHHHHHHhcCCCEEEEEEEecCC
Confidence 4455689999865 4667777778877653 23 367887
No 454
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=26.39 E-value=2.6e+02 Score=20.61 Aligned_cols=65 Identities=17% Similarity=0.148 Sum_probs=37.4
Q ss_pred eCccccccCCCCCCCChHHHHHHHhhccCCC----cEEEEeCCCchHHHHHHHHHHCCccceeeccccH
Q 032621 50 FNIPYMFNTPEGRVKNPDFLKKVRSLCKEED----RLVVGCQSGARSLHATADLLGAGFKHVSNFGGGH 114 (137)
Q Consensus 50 inip~~~~~~~~~~~~~~~~~~~~~~~~~~~----~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~ 114 (137)
+.+-.+..++.+.+...-....+......+. ..|+-..+|..+..+|...+.+|++=..++..+.
T Consensus 23 i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~Gl~~~i~vp~~~ 91 (298)
T TIGR01139 23 VFVKLEGRNPSGSVKDRIALNMIWDAEKRGLLKPGKTIVEPTSGNTGIALAMVAAARGYKLILTMPETM 91 (298)
T ss_pred EEEEEcccCCCCcchHHHHHHHHHHHHHcCCCCCCCEEEEeCCChhHHHHHHHHHHcCCeEEEEeCCcc
Confidence 6667777777766654333333333222222 3345555688888888888889986333444443
No 455
>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]
Probab=26.39 E-value=1.3e+02 Score=23.27 Aligned_cols=39 Identities=13% Similarity=0.057 Sum_probs=29.7
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHH--CCccceeeccccHHH
Q 032621 78 EEDRLVVGCQSGARSLHATADLLG--AGFKHVSNFGGGHMA 116 (137)
Q Consensus 78 ~~~~iv~~c~~g~ra~~~~~~l~~--~G~~~v~~l~GG~~~ 116 (137)
++-.+.++|++|..|--.|.+|.. -+++++..|+--|.+
T Consensus 100 PeLsvc~F~NSGSEANDLALRLAR~ftkhqDvItldHAYHG 140 (452)
T KOG1403|consen 100 PELSVCFFVNSGSEANDLALRLARNFTKHQDVITLDHAYHG 140 (452)
T ss_pred CCceEEEEecCCchhhHHHHHHHHhhcccCceEEEechhcc
Confidence 346689999999999988888876 477778777754443
No 456
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=26.36 E-value=2.4e+02 Score=24.02 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=26.9
Q ss_pred EEEEeCCCchHHHHHHHHHHCCccceeeccccHH
Q 032621 82 LVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM 115 (137)
Q Consensus 82 iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~~ 115 (137)
.+++.++-.++...|..|...|++ +.-+.+|++
T Consensus 443 tIVFT~SRrr~h~lA~~L~~kG~~-a~pYHaGL~ 475 (830)
T COG1202 443 TIVFTYSRRRCHELADALTGKGLK-AAPYHAGLP 475 (830)
T ss_pred eEEEecchhhHHHHHHHhhcCCcc-cccccCCCc
Confidence 455667777999999999999997 777888765
No 457
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=26.09 E-value=1.8e+02 Score=23.43 Aligned_cols=32 Identities=16% Similarity=0.126 Sum_probs=23.0
Q ss_pred HHHHHHHHHH-CCccceeeccccHHHHHhCCCce
Q 032621 92 SLHATADLLG-AGFKHVSNFGGGHMAWVQNGLKV 124 (137)
Q Consensus 92 a~~~~~~l~~-~G~~~v~~l~GG~~~w~~~~~p~ 124 (137)
|...|.+++. .|.+ |.++-..+..|.++..++
T Consensus 219 a~tiAEyfrd~~G~~-VLl~~DslTR~A~A~REi 251 (449)
T TIGR03305 219 ALTMAEYFRDDEKQD-VLLLIDNIFRFIQAGSEV 251 (449)
T ss_pred HHHHHHHHHHhcCCc-eEEEecChHHHHHHHHHH
Confidence 5566778887 8974 877766888887765443
No 458
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=26.02 E-value=1.4e+02 Score=20.23 Aligned_cols=51 Identities=24% Similarity=0.248 Sum_probs=34.8
Q ss_pred ccCCCcEEEEeC---CCchHHHHHHHHHHCCccce---eecc----ccHHHHHhC-CCceec
Q 032621 76 CKEEDRLVVGCQ---SGARSLHATADLLGAGFKHV---SNFG----GGHMAWVQN-GLKVKA 126 (137)
Q Consensus 76 ~~~~~~iv~~c~---~g~ra~~~~~~l~~~G~~~v---~~l~----GG~~~w~~~-~~p~~~ 126 (137)
+.++++++++++ +|.....+...|++.|.+-+ .+++ ||...+... +.|+..
T Consensus 105 ~~~g~~VlIVDDvi~TG~Tl~~a~~~l~~~Ga~v~~~~vlvdr~~~~~~~~l~~~~gv~~~s 166 (173)
T TIGR00336 105 LLEGDKVVVVEDVITTGTSILEAVEIIQAAGGQVAGVIIAVDRQERSAGQEFEKEYGLPVIS 166 (173)
T ss_pred CCCCCEEEEEeccccChHHHHHHHHHHHHcCCeEEEEEEEEecCchhHHHHHHHhcCCeEEE
Confidence 457889999988 68888888999999997521 2333 344555544 666653
No 459
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=26.00 E-value=1.4e+02 Score=23.46 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=20.7
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHCCcc
Q 032621 79 EDRLVVGCQSGARSLHATADLLGAGFK 105 (137)
Q Consensus 79 ~~~iv~~c~~g~ra~~~~~~l~~~G~~ 105 (137)
+.++++.-.+|.-|..+++.|.+.|++
T Consensus 180 ~gkvlvllSGGiDSpVAa~ll~krG~~ 206 (381)
T PRK08384 180 QGKVVALLSGGIDSPVAAFLMMKRGVE 206 (381)
T ss_pred CCcEEEEEeCChHHHHHHHHHHHcCCe
Confidence 344555556788899999999999986
No 460
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=25.99 E-value=1.3e+02 Score=21.55 Aligned_cols=42 Identities=21% Similarity=0.207 Sum_probs=30.6
Q ss_pred CCCcEEEEeC---CCchHHHHHHHHHHC-Cccceeecc-----ccHHHHHh
Q 032621 78 EEDRLVVGCQ---SGARSLHATADLLGA-GFKHVSNFG-----GGHMAWVQ 119 (137)
Q Consensus 78 ~~~~iv~~c~---~g~ra~~~~~~l~~~-G~~~v~~l~-----GG~~~w~~ 119 (137)
.++.+++.+. +|..+..+...|++. |-+++.++. .|+.+..+
T Consensus 123 ~~~~viv~DPMLATG~s~i~ai~~L~~~G~~~~I~~v~~vAapeGi~~v~~ 173 (210)
T COG0035 123 DERTVIVLDPMLATGGSAIAAIDLLKKRGGPKNIKVVSLVAAPEGIKAVEK 173 (210)
T ss_pred cCCeEEEECchhhccHhHHHHHHHHHHhCCCceEEEEEEEecHHHHHHHHH
Confidence 4556777766 799999999999999 777765432 46777655
No 461
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=25.96 E-value=2.3e+02 Score=19.63 Aligned_cols=40 Identities=28% Similarity=0.340 Sum_probs=28.2
Q ss_pred HHhhccCCCcEEEEeCCCc--hHHHHHHHHHHCCccceeeccc
Q 032621 72 VRSLCKEEDRLVVGCQSGA--RSLHATADLLGAGFKHVSNFGG 112 (137)
Q Consensus 72 ~~~~~~~~~~iv~~c~~g~--ra~~~~~~l~~~G~~~v~~l~G 112 (137)
+.....+++-+++++.+|. ....++..+++.|.+ +..+.+
T Consensus 105 ~~~~~~~~Dv~I~iS~SG~t~~~i~~~~~ak~~g~~-iI~iT~ 146 (192)
T PRK00414 105 VEAVGREGDVLLGISTSGNSGNIIKAIEAARAKGMK-VITLTG 146 (192)
T ss_pred HHHhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCe-EEEEeC
Confidence 3333567787888888886 355677888999987 655554
No 462
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=25.91 E-value=2.2e+02 Score=21.90 Aligned_cols=65 Identities=18% Similarity=0.160 Sum_probs=37.5
Q ss_pred eCccccccCCCCCCCChHHHHHHHhhccCCC-cEEEEeCCCchHHHHHHHHHHCCccceeeccccH
Q 032621 50 FNIPYMFNTPEGRVKNPDFLKKVRSLCKEED-RLVVGCQSGARSLHATADLLGAGFKHVSNFGGGH 114 (137)
Q Consensus 50 inip~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~ 114 (137)
+.+..+.+++.+.+...-....+..+...++ .-|+.+.+|..+..+|+..+.+|++-..++..+.
T Consensus 17 i~~K~E~~~ptgS~K~R~a~~~i~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~ 82 (380)
T TIGR01127 17 VYLKLENLQKTGSFKIRGALNKIANLSEDQRQRGVVAASAGNHAQGVAYAAKKFGIKAVIVMPESA 82 (380)
T ss_pred EEEEecCCCCCCCcHHHHHHHHHHhcchhccCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCC
Confidence 5555555566655432222223333322222 3466667799999999999999997333454443
No 463
>PLN02356 phosphateglycerate kinase
Probab=25.91 E-value=2e+02 Score=22.92 Aligned_cols=65 Identities=15% Similarity=0.111 Sum_probs=39.3
Q ss_pred eCccccccCCCCCCCChHHHHHHHhhccCC----CcEEEEeCCCchHHHHHHHHHHCCccceeeccccH
Q 032621 50 FNIPYMFNTPEGRVKNPDFLKKVRSLCKEE----DRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGH 114 (137)
Q Consensus 50 inip~~~~~~~~~~~~~~~~~~~~~~~~~~----~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~ 114 (137)
+.+-.+.++|.+.+.+.-....+......+ ..+|+.+.+|..+..+|...+.+|++-+.++....
T Consensus 70 v~~KlE~~nPtGS~KdR~A~~~i~~a~~~g~~~~~g~VveaSSGN~g~alA~~aa~~G~~~~ivvP~~~ 138 (423)
T PLN02356 70 ILGKCEFLNPGGSVKDRVAVKIIEEALESGQLFPGGVVTEGSAGSTAISLATVAPAYGCKCHVVIPDDV 138 (423)
T ss_pred EEEEeccCCCCCCHHHHHHHHHHHHHHhCCccCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCCC
Confidence 666667677777664433332333332222 12566678899999999999999997444455443
No 464
>TIGR03642 cas_csx13 CRISPR-associated protein, Csx13 family. This model describes a protein N-terminal protein sequence domain strictly associated with CRISPR and CRISPR-associated protein systems. This model and TIGR02584 identify two separate clades from a larger homology domain family, both CRISPR-associated, while other homologs are found that may not be. Members are found in bacteria that include Pelotomaculum thermopropionicum SI, Thermoanaerobacter tengcongensis MB4, and Roseiflexus sp. RS-1, and in archaea that include Thermoplasma volcanium, Picrophilus torridus, and Methanospirillum hungatei. The molecular function is unknown.
Probab=25.90 E-value=2e+02 Score=18.81 Aligned_cols=28 Identities=14% Similarity=-0.062 Sum_probs=17.4
Q ss_pred EEEEeCCCch---HHHHHHHHHHCCccceee
Q 032621 82 LVVGCQSGAR---SLHATADLLGAGFKHVSN 109 (137)
Q Consensus 82 iv~~c~~g~r---a~~~~~~l~~~G~~~v~~ 109 (137)
-+.+|=+|.| +..++..+.-+|.++++-
T Consensus 92 ~lh~~iaGGRK~Ms~~~~~a~sl~g~Drl~H 122 (124)
T TIGR03642 92 RIIVNISGGRKIMTIILALYAQLLFEDEVYH 122 (124)
T ss_pred eEEEEecCCHHHHHHHHHHHHHHhCCcceee
Confidence 4666666665 455555566678777664
No 465
>PLN02347 GMP synthetase
Probab=25.90 E-value=2.1e+02 Score=23.60 Aligned_cols=44 Identities=11% Similarity=0.176 Sum_probs=30.4
Q ss_pred HHHHhhccCCCcEEEEeCCCchHHHHHHHHHH-CCcccee--eccccH
Q 032621 70 KKVRSLCKEEDRLVVGCQSGARSLHATADLLG-AGFKHVS--NFGGGH 114 (137)
Q Consensus 70 ~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~-~G~~~v~--~l~GG~ 114 (137)
+.+.+.+.+...+++.-.+|.-|..++..+.+ .|. ++. .++.|+
T Consensus 220 ~~i~~~~~~~~~vvvalSGGVDSsvla~l~~~alG~-~v~av~id~g~ 266 (536)
T PLN02347 220 ELIKATVGPDEHVICALSGGVDSTVAATLVHKAIGD-RLHCVFVDNGL 266 (536)
T ss_pred HHHHHHhccCCeEEEEecCChhHHHHHHHHHHHhCC-cEEEEEEeCCC
Confidence 44444455566788877888999988888888 784 454 556554
No 466
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=25.90 E-value=1.4e+02 Score=20.36 Aligned_cols=33 Identities=24% Similarity=0.170 Sum_probs=21.1
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHHCCccceeecc
Q 032621 78 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFG 111 (137)
Q Consensus 78 ~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~ 111 (137)
++++++++..+|.-+...+..|...|+ +|.++.
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~ 59 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVG 59 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEc
Confidence 345566666567766677777777776 466553
No 467
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=25.88 E-value=2.4e+02 Score=20.67 Aligned_cols=31 Identities=23% Similarity=0.353 Sum_probs=14.7
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHHCCccceeecc
Q 032621 78 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFG 111 (137)
Q Consensus 78 ~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~ 111 (137)
.+..++++|+.... .....+++.|++ |..+.
T Consensus 30 ~g~~v~f~~~~~~~--~~~~~i~~~g~~-v~~~~ 60 (279)
T TIGR03590 30 QGAEVAFACKPLPG--DLIDLLLSAGFP-VYELP 60 (279)
T ss_pred CCCEEEEEeCCCCH--HHHHHHHHcCCe-EEEec
Confidence 34556666654221 123345556664 55443
No 468
>PRK09694 helicase Cas3; Provisional
Probab=25.80 E-value=1.4e+02 Score=26.29 Aligned_cols=49 Identities=8% Similarity=0.095 Sum_probs=36.4
Q ss_pred HHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHHCCc--cceeeccccHH
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGF--KHVSNFGGGHM 115 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~~G~--~~v~~l~GG~~ 115 (137)
.+.+.+.+.+..+..++++|++=.++..++..|++.+- .++..+.+.+.
T Consensus 548 ~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~ 598 (878)
T PRK09694 548 TLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFT 598 (878)
T ss_pred HHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCC
Confidence 44455544446778899999998899999999998652 24888888753
No 469
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=25.80 E-value=2.4e+02 Score=21.80 Aligned_cols=15 Identities=20% Similarity=0.614 Sum_probs=10.7
Q ss_pred ccCCCcEEEEeCCCc
Q 032621 76 CKEEDRLVVGCQSGA 90 (137)
Q Consensus 76 ~~~~~~iv~~c~~g~ 90 (137)
+..+..|+.+|++|.
T Consensus 145 I~~g~~ILThc~sg~ 159 (339)
T PRK06036 145 LEDGDTVLTHCNAGR 159 (339)
T ss_pred ccCCCEEEEecCCcc
Confidence 556667888888764
No 470
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=25.76 E-value=1.4e+02 Score=18.66 Aligned_cols=27 Identities=11% Similarity=0.154 Sum_probs=14.8
Q ss_pred EEEEeCCCc-hHHHHHHHHHHCCccceee
Q 032621 82 LVVGCQSGA-RSLHATADLLGAGFKHVSN 109 (137)
Q Consensus 82 iv~~c~~g~-ra~~~~~~l~~~G~~~v~~ 109 (137)
|+++++... .....+..|.+.|++ |.+
T Consensus 2 Il~i~~~~~~~~~~~~~~L~~~g~~-V~i 29 (139)
T PF13477_consen 2 ILLIGNTPSTFIYNLAKELKKRGYD-VHI 29 (139)
T ss_pred EEEEecCcHHHHHHHHHHHHHCCCE-EEE
Confidence 455555432 444556666666765 543
No 471
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=25.75 E-value=84 Score=25.08 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=23.3
Q ss_pred EEEeCCCchHHHHHHHHHHCCccceeecc
Q 032621 83 VVGCQSGARSLHATADLLGAGFKHVSNFG 111 (137)
Q Consensus 83 v~~c~~g~ra~~~~~~l~~~G~~~v~~l~ 111 (137)
|+++.+|.....+|..|...|.+ |..++
T Consensus 7 ViViGtGL~e~ilAa~Ls~~Gkk-VLhlD 34 (443)
T PTZ00363 7 VIVCGTGLKECILSGLLSVNGKK-VLHMD 34 (443)
T ss_pred EEEECCChHHHHHHhhhhhCCCE-EEEec
Confidence 56778999999999999999975 77665
No 472
>PRK03341 arginine repressor; Provisional
Probab=25.68 E-value=91 Score=21.46 Aligned_cols=27 Identities=19% Similarity=0.179 Sum_probs=19.9
Q ss_pred ccCCCcEEEEeCCCchHHHHHHHHHHC
Q 032621 76 CKEEDRLVVGCQSGARSLHATADLLGA 102 (137)
Q Consensus 76 ~~~~~~iv~~c~~g~ra~~~~~~l~~~ 102 (137)
+..+++|++.|.+...+..+...+.++
T Consensus 138 IAGDDTIlvi~~~~~~a~~l~~~i~~~ 164 (168)
T PRK03341 138 IAGDDTVLVIARDPMTGAELAARLLRL 164 (168)
T ss_pred eecCCEEEEEeCCHHHHHHHHHHHHhh
Confidence 345777888888887777777777655
No 473
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=25.59 E-value=1.3e+02 Score=20.97 Aligned_cols=10 Identities=10% Similarity=0.218 Sum_probs=4.4
Q ss_pred CCcEEEEeCC
Q 032621 79 EDRLVVGCQS 88 (137)
Q Consensus 79 ~~~iv~~c~~ 88 (137)
+..+++++..
T Consensus 28 g~~v~~~~r~ 37 (258)
T PRK12429 28 GAKVVIADLN 37 (258)
T ss_pred CCeEEEEeCC
Confidence 3344444443
No 474
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=25.55 E-value=1.1e+02 Score=22.06 Aligned_cols=17 Identities=29% Similarity=0.511 Sum_probs=12.8
Q ss_pred CCcEEEEeCCCc-hHHHH
Q 032621 79 EDRLVVGCQSGA-RSLHA 95 (137)
Q Consensus 79 ~~~iv~~c~~g~-ra~~~ 95 (137)
..+|+++|..|. |+...
T Consensus 193 ~~pivVHC~~G~gRsg~f 210 (258)
T smart00194 193 TGPIVVHCSAGVGRTGTF 210 (258)
T ss_pred CCCEEEEeCCCCCccchh
Confidence 678999999875 65443
No 475
>PRK08198 threonine dehydratase; Provisional
Probab=25.48 E-value=2.2e+02 Score=22.11 Aligned_cols=65 Identities=18% Similarity=0.104 Sum_probs=39.1
Q ss_pred eCccccccCCCCCCCChHHHHHHHhhc-cCCCcEEEEeCCCchHHHHHHHHHHCCccceeeccccH
Q 032621 50 FNIPYMFNTPEGRVKNPDFLKKVRSLC-KEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGH 114 (137)
Q Consensus 50 inip~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~ 114 (137)
+.+-.+.+++.+.+...-....+..+. .....-|+.+.+|..+..+|...+.+|++-+.++..+.
T Consensus 39 i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~ 104 (404)
T PRK08198 39 VYLKCENLQRTGSFKIRGAYNKIASLSEEERARGVVAASAGNHAQGVAYAASLLGIKATIVMPETA 104 (404)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHhccHhhcCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCC
Confidence 666777677776654322222333321 12233466677899999999999999997444555443
No 476
>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=25.45 E-value=1.1e+02 Score=24.41 Aligned_cols=37 Identities=22% Similarity=0.288 Sum_probs=24.7
Q ss_pred CCcEEEEeCCCchHHHHHHHHHH--CCccc------eeeccccHH
Q 032621 79 EDRLVVGCQSGARSLHATADLLG--AGFKH------VSNFGGGHM 115 (137)
Q Consensus 79 ~~~iv~~c~~g~ra~~~~~~l~~--~G~~~------v~~l~GG~~ 115 (137)
+..-|++|++|..|-.+|-.+.. .+.++ +..+.|||.
T Consensus 115 ~~~rvff~nsGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyH 159 (433)
T KOG1401|consen 115 SAERVFFCNSGTEANETALKFARKFTGKKHPEKKTKFIAFENSYH 159 (433)
T ss_pred CccEEEEecCCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcC
Confidence 34579999999998877765543 23332 666777664
No 477
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=25.43 E-value=1.7e+02 Score=19.40 Aligned_cols=33 Identities=18% Similarity=0.153 Sum_probs=27.0
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHHCCccceeecc
Q 032621 78 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFG 111 (137)
Q Consensus 78 ~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~ 111 (137)
.++.++++.++......++..|.+.|.+ |...+
T Consensus 27 ~gk~v~VvGrs~~vG~pla~lL~~~gat-V~~~~ 59 (140)
T cd05212 27 DGKKVLVVGRSGIVGAPLQCLLQRDGAT-VYSCD 59 (140)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEeC
Confidence 5778999988888899999999988875 66555
No 478
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=25.43 E-value=2.4e+02 Score=22.95 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=34.9
Q ss_pred ccCCCcEEEEeC---CCchHHHHHHHHHHCCccc--ee-ecc---ccHHHHHhCCCcee
Q 032621 76 CKEEDRLVVGCQ---SGARSLHATADLLGAGFKH--VS-NFG---GGHMAWVQNGLKVK 125 (137)
Q Consensus 76 ~~~~~~iv~~c~---~g~ra~~~~~~l~~~G~~~--v~-~l~---GG~~~w~~~~~p~~ 125 (137)
+.++++|+++++ +|.....+...+++.|.+- +. +++ ||-....+.+.|+.
T Consensus 390 ~~~G~rVlIVDDViTTGgSi~eaie~l~~aG~~V~~v~vlVDR~~g~~~~L~~~gv~~~ 448 (477)
T PRK05500 390 FHPGETVVVVDDILITGKSVMEGAEKLKSAGLNVRDIVVFIDHEQGVKDKLQSHGYQAY 448 (477)
T ss_pred CCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEECCcchHHHHHhcCCCEE
Confidence 568899999998 7999999999999999752 22 232 34444445566554
No 479
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=25.21 E-value=1.3e+02 Score=20.87 Aligned_cols=23 Identities=13% Similarity=0.052 Sum_probs=9.3
Q ss_pred EEEEeCCCchHHHHHHHHHHCCc
Q 032621 82 LVVGCQSGARSLHATADLLGAGF 104 (137)
Q Consensus 82 iv~~c~~g~ra~~~~~~l~~~G~ 104 (137)
++|...+|.-...++..|.+.|+
T Consensus 8 vlItGasg~iG~~l~~~l~~~G~ 30 (251)
T PRK07231 8 AIVTGASSGIGEGIARRFAAEGA 30 (251)
T ss_pred EEEECCCChHHHHHHHHHHHCCC
Confidence 33333333333444444444444
No 480
>PRK15083 PTS system mannitol-specific transporter subunit IICBA; Provisional
Probab=25.21 E-value=1.1e+02 Score=25.63 Aligned_cols=33 Identities=21% Similarity=0.399 Sum_probs=22.7
Q ss_pred CCcEEEEeCCCchHH-----HHHHHHHHCCccceeecc
Q 032621 79 EDRLVVGCQSGARSL-----HATADLLGAGFKHVSNFG 111 (137)
Q Consensus 79 ~~~iv~~c~~g~ra~-----~~~~~l~~~G~~~v~~l~ 111 (137)
-++++++|++|.-+. .....+++.+.+++.+.+
T Consensus 378 ~kkilvVC~sG~GsS~m~~~~l~~~l~~~~i~~i~i~~ 415 (639)
T PRK15083 378 VRKIIVACDAGMGSSAMGAGVLRKKVQDAGLSQISVTN 415 (639)
T ss_pred cCEEEEECCCCccHHHHHHHHHHHHHHHcCCCeeEEEE
Confidence 467999999998655 355667777766555444
No 481
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=25.18 E-value=3.3e+02 Score=21.14 Aligned_cols=48 Identities=21% Similarity=0.196 Sum_probs=36.8
Q ss_pred cEEEEeCCCchH---HHHHHHHHHCCccceeeccccHHHHHhCCCceecCC
Q 032621 81 RLVVGCQSGARS---LHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKARE 128 (137)
Q Consensus 81 ~iv~~c~~g~ra---~~~~~~l~~~G~~~v~~l~GG~~~w~~~~~p~~~~~ 128 (137)
.|++.|..|... ..+-..+...|-++|+.+..++.+-...++|+..+.
T Consensus 103 rI~i~vP~g~T~VErrAi~ea~~~aGa~~V~lieEp~aAAIGaglpi~ep~ 153 (342)
T COG1077 103 RIVICVPSGITDVERRAIKEAAESAGAREVYLIEEPMAAAIGAGLPIMEPT 153 (342)
T ss_pred cEEEEecCCccHHHHHHHHHHHHhccCceEEEeccHHHHHhcCCCcccCCC
Confidence 377777777643 344556778999999999999999888899887654
No 482
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=25.16 E-value=1.4e+02 Score=20.59 Aligned_cols=23 Identities=17% Similarity=0.046 Sum_probs=9.6
Q ss_pred EEEEeCCCchHHHHHHHHHHCCc
Q 032621 82 LVVGCQSGARSLHATADLLGAGF 104 (137)
Q Consensus 82 iv~~c~~g~ra~~~~~~l~~~G~ 104 (137)
++|...+|.-....+..|.+.|+
T Consensus 8 ilItGasg~iG~~l~~~l~~~g~ 30 (246)
T PRK05653 8 ALVTGASRGIGRAIALRLAADGA 30 (246)
T ss_pred EEEECCCcHHHHHHHHHHHHCCC
Confidence 34443334444444444444444
No 483
>PRK04280 arginine repressor; Provisional
Probab=25.16 E-value=94 Score=20.86 Aligned_cols=26 Identities=12% Similarity=0.252 Sum_probs=18.2
Q ss_pred ccCCCcEEEEeCCCchHHHHHHHHHH
Q 032621 76 CKEEDRLVVGCQSGARSLHATADLLG 101 (137)
Q Consensus 76 ~~~~~~iv~~c~~g~ra~~~~~~l~~ 101 (137)
+..+++|++.|.+...+......+.+
T Consensus 121 IAGdDTilvi~~~~~~a~~l~~~l~~ 146 (148)
T PRK04280 121 ICGDDTCLIICRTEEDAEEVKDRFLN 146 (148)
T ss_pred EecCCEEEEEECCHHHHHHHHHHHHH
Confidence 34567788888877777777666654
No 484
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=25.13 E-value=1.9e+02 Score=18.28 Aligned_cols=45 Identities=20% Similarity=0.275 Sum_probs=23.6
Q ss_pred HHHHHHHhh---ccCCCcEEEEeCC-CchHHHHHHHHHHCCccceeeccc
Q 032621 67 DFLKKVRSL---CKEEDRLVVGCQS-GARSLHATADLLGAGFKHVSNFGG 112 (137)
Q Consensus 67 ~~~~~~~~~---~~~~~~iv~~c~~-g~ra~~~~~~l~~~G~~~v~~l~G 112 (137)
++.+++.+. .+.++.+++.|+= |..-...+..+.... .++.++.|
T Consensus 42 ~~~~~i~~~i~~~~~~~~viil~Dl~GGSp~n~~~~~~~~~-~~~~visG 90 (122)
T cd00006 42 DLLEKIKAALAELDSGEGVLILTDLFGGSPNNAAARLSMEH-PPVEVIAG 90 (122)
T ss_pred HHHHHHHHHHHHhCCCCcEEEEEeCCCCCHHHHHHHHHhcC-CCEEEEEc
Confidence 455555444 3456778877774 333333333333322 56777765
No 485
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=25.11 E-value=1.2e+02 Score=23.37 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=17.3
Q ss_pred cEEEEeCCCchHHHHHHHHHHCCcc
Q 032621 81 RLVVGCQSGARSLHATADLLGAGFK 105 (137)
Q Consensus 81 ~iv~~c~~g~ra~~~~~~l~~~G~~ 105 (137)
+|++...+|.-|..++..|.+.|++
T Consensus 2 kVlValSGGvDSsv~a~lL~~~G~~ 26 (352)
T TIGR00420 2 KVIVGLSGGVDSSVSAYLLKQQGYE 26 (352)
T ss_pred eEEEEEeCCHHHHHHHHHHHHcCCe
Confidence 3555556677777777777777774
No 486
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=25.09 E-value=1.1e+02 Score=21.66 Aligned_cols=25 Identities=16% Similarity=0.106 Sum_probs=17.4
Q ss_pred cEEEEeCCCchHHHHHHHHHHCCcc
Q 032621 81 RLVVGCQSGARSLHATADLLGAGFK 105 (137)
Q Consensus 81 ~iv~~c~~g~ra~~~~~~l~~~G~~ 105 (137)
+++..-.+|.-|..|++.+.+.|.+
T Consensus 5 k~l~LlSGGiDSpVAa~lm~krG~~ 29 (197)
T PF02568_consen 5 KALALLSGGIDSPVAAWLMMKRGCE 29 (197)
T ss_dssp EEEEE-SSCCHHHHHHHHHHCBT-E
T ss_pred eEEEEecCCccHHHHHHHHHHCCCE
Confidence 3444446788888888888888886
No 487
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=25.09 E-value=1.8e+02 Score=20.74 Aligned_cols=29 Identities=14% Similarity=-0.152 Sum_probs=16.5
Q ss_pred ccCCCcEEEEeCCCchHHHHHHHHHHCCc
Q 032621 76 CKEEDRLVVGCQSGARSLHATADLLGAGF 104 (137)
Q Consensus 76 ~~~~~~iv~~c~~g~ra~~~~~~l~~~G~ 104 (137)
+..+.+|.+...+|.-|..++..+.+.+.
T Consensus 12 ~~~~~~v~~~LSGGlDSs~va~~~~~~~~ 40 (269)
T cd01991 12 LRSDVPVGVLLSGGLDSSLVAALAARLLP 40 (269)
T ss_pred hccCCceEEeecccHHHHHHHHHHHHhhC
Confidence 34555666666666666555555555443
No 488
>PLN02583 cinnamoyl-CoA reductase
Probab=24.99 E-value=1.4e+02 Score=21.92 Aligned_cols=32 Identities=22% Similarity=0.247 Sum_probs=22.1
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHHCCccceeec
Q 032621 78 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNF 110 (137)
Q Consensus 78 ~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l 110 (137)
+.+.+++...+|.-...++..|.+.||+ |..+
T Consensus 5 ~~k~vlVTGatG~IG~~lv~~Ll~~G~~-V~~~ 36 (297)
T PLN02583 5 SSKSVCVMDASGYVGFWLVKRLLSRGYT-VHAA 36 (297)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCE-EEEE
Confidence 3445666666677788888888888885 6544
No 489
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=24.97 E-value=1.6e+02 Score=17.92 Aligned_cols=28 Identities=21% Similarity=0.150 Sum_probs=20.1
Q ss_pred CCCcEEEEeCC-CchHHHHHHHHHHCCcc
Q 032621 78 EEDRLVVGCQS-GARSLHATADLLGAGFK 105 (137)
Q Consensus 78 ~~~~iv~~c~~-g~ra~~~~~~l~~~G~~ 105 (137)
.+.+|++|... ...+..+...|.+.|++
T Consensus 6 ~~~~Vvvysk~~Cp~C~~ak~~L~~~~i~ 34 (99)
T TIGR02189 6 SEKAVVIFSRSSCCMCHVVKRLLLTLGVN 34 (99)
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 34567788775 45788888888888764
No 490
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=24.94 E-value=72 Score=25.87 Aligned_cols=45 Identities=22% Similarity=0.319 Sum_probs=35.1
Q ss_pred EEEEeCCCchHHHHHHHHHHCCccceeeccccH---------HHHHhCCCceecC
Q 032621 82 LVVGCQSGARSLHATADLLGAGFKHVSNFGGGH---------MAWVQNGLKVKAR 127 (137)
Q Consensus 82 iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~---------~~w~~~~~p~~~~ 127 (137)
=|+||.+-......|-.|...|+. ...+.-|+ .+|..+.-|+.-.
T Consensus 258 GIVYCRTR~~cEq~AI~l~~~Gi~-A~AYHAGLK~~ERTeVQe~WM~~~~PvI~A 311 (641)
T KOG0352|consen 258 GIVYCRTRNECEQVAIMLEIAGIP-AMAYHAGLKKKERTEVQEKWMNNEIPVIAA 311 (641)
T ss_pred eEEEeccHHHHHHHHHHhhhcCcc-hHHHhcccccchhHHHHHHHhcCCCCEEEE
Confidence 389999988899999999999986 54555554 3698888887654
No 491
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=24.92 E-value=2.1e+02 Score=22.57 Aligned_cols=45 Identities=18% Similarity=0.089 Sum_probs=32.2
Q ss_pred HHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHHCCccceeecccc
Q 032621 67 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGG 113 (137)
Q Consensus 67 ~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG 113 (137)
-....+.+++.+++++++ +..|....+.+..++.+|.+ +..++-.
T Consensus 68 amEAav~sl~~pgdkVLv-~~nG~FG~R~~~ia~~~g~~-v~~~~~~ 112 (383)
T COG0075 68 AMEAAVASLVEPGDKVLV-VVNGKFGERFAEIAERYGAE-VVVLEVE 112 (383)
T ss_pred HHHHHHHhccCCCCeEEE-EeCChHHHHHHHHHHHhCCc-eEEEeCC
Confidence 445566666667666554 45688999999999999986 7766654
No 492
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=24.87 E-value=1.6e+02 Score=25.88 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=29.0
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHHCCccceeeccccHH
Q 032621 78 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM 115 (137)
Q Consensus 78 ~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG~~ 115 (137)
....++++|++-.++..++..|.+.|+ ..|.|.+.
T Consensus 271 ~g~~vLVF~NTv~~Aq~L~~~L~~~g~---~lLHG~m~ 305 (844)
T TIGR02621 271 SGGAILVFCRTVKHVRKVFAKLPKEKF---ELLTGTLR 305 (844)
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCC---eEeeCCCC
Confidence 456799999999999999999999886 57777653
No 493
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=24.76 E-value=1.9e+02 Score=21.61 Aligned_cols=41 Identities=7% Similarity=0.052 Sum_probs=29.5
Q ss_pred hHHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHHCCccc
Q 032621 66 PDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKH 106 (137)
Q Consensus 66 ~~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~~G~~~ 106 (137)
.+|...+.++...+..+|+++..+..+..+.+.+++.|++.
T Consensus 186 ~d~~~~i~~l~~~~~d~v~~~~~~~~~~~~~~~~~~~G~~~ 226 (347)
T cd06340 186 RDLTSEVLKLKAANPDAILPASYTNDAILLVRTMKEQRVEP 226 (347)
T ss_pred cchHHHHHHHHhcCCCEEEEcccchhHHHHHHHHHHcCCCC
Confidence 36666666654445567777777777778888899999864
No 494
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=24.75 E-value=2e+02 Score=21.06 Aligned_cols=40 Identities=8% Similarity=-0.013 Sum_probs=28.0
Q ss_pred hHHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHHCCcc
Q 032621 66 PDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFK 105 (137)
Q Consensus 66 ~~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~~G~~ 105 (137)
.+|...+.++...+..+|+++..+..+..+.+.+++.|+.
T Consensus 179 ~d~~~~v~~l~~~~pd~v~~~~~~~~~~~~~~~~~~~G~~ 218 (312)
T cd06346 179 SSYSSEVAAAAAGGPDALVVIGYPETGSGILRSAYEQGLF 218 (312)
T ss_pred CCHHHHHHHHHhcCCCEEEEecccchHHHHHHHHHHcCCC
Confidence 3566666666444555777776666777788888889985
No 495
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=24.74 E-value=2e+02 Score=20.85 Aligned_cols=26 Identities=31% Similarity=0.332 Sum_probs=19.0
Q ss_pred ccCCCcEEEEeCCCchHHHHHHHHHH
Q 032621 76 CKEEDRLVVGCQSGARSLHATADLLG 101 (137)
Q Consensus 76 ~~~~~~iv~~c~~g~ra~~~~~~l~~ 101 (137)
+.++++|++.+.+|.-|...+..|..
T Consensus 26 i~~~~kilVa~SGG~DS~~LL~ll~~ 51 (258)
T PRK10696 26 IEEGDRVMVCLSGGKDSYTLLDILLN 51 (258)
T ss_pred CCCCCEEEEEecCCHHHHHHHHHHHH
Confidence 56677788888888877777766644
No 496
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=24.72 E-value=1.5e+02 Score=19.75 Aligned_cols=15 Identities=27% Similarity=0.098 Sum_probs=5.7
Q ss_pred CchHHHHHHHHHHCC
Q 032621 89 GARSLHATADLLGAG 103 (137)
Q Consensus 89 g~ra~~~~~~l~~~G 103 (137)
|.-|..++..+.+.|
T Consensus 9 G~DS~~~~~~~~~~~ 23 (169)
T cd01995 9 GLDSTTCLAWAKKEG 23 (169)
T ss_pred cHHHHHHHHHHHHcC
Confidence 333333333333333
No 497
>PLN02268 probable polyamine oxidase
Probab=24.65 E-value=1.1e+02 Score=23.89 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=20.9
Q ss_pred EEeCCCchHHHHHHHHHHCCccceeecc
Q 032621 84 VGCQSGARSLHATADLLGAGFKHVSNFG 111 (137)
Q Consensus 84 ~~c~~g~ra~~~~~~l~~~G~~~v~~l~ 111 (137)
++...|.....+|+.|.+.|++ |.+|+
T Consensus 4 vVIGaGisGL~aA~~L~~~g~~-v~vlE 30 (435)
T PLN02268 4 IVIGGGIAGIAAARALHDASFK-VTLLE 30 (435)
T ss_pred EEECCCHHHHHHHHHHHhCCCe-EEEEe
Confidence 3446788888889999999985 77775
No 498
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=24.63 E-value=1.5e+02 Score=21.59 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=22.5
Q ss_pred HHHHHHhhccCC-CcEEEEeCCCc-hHHHHHHH-HHHCCcc
Q 032621 68 FLKKVRSLCKEE-DRLVVGCQSGA-RSLHATAD-LLGAGFK 105 (137)
Q Consensus 68 ~~~~~~~~~~~~-~~iv~~c~~g~-ra~~~~~~-l~~~G~~ 105 (137)
+...+.-++.+. .+|+++|..|. |...++.. +...|..
T Consensus 124 ~~~~~~l~~~~e~~PvL~HC~~GkdRTGl~~al~r~~~~~~ 164 (249)
T COG2365 124 LVELLQLLADAENGPVLIHCTAGKDRTGLVAALYRKLVGGS 164 (249)
T ss_pred HHHHHHHHhhcccCCEEEecCCCCcchHHHHHHHHHHhCCc
Confidence 333333335565 89999999887 65554443 3334543
No 499
>PRK08246 threonine dehydratase; Provisional
Probab=24.56 E-value=2.8e+02 Score=20.74 Aligned_cols=63 Identities=11% Similarity=0.022 Sum_probs=36.7
Q ss_pred eCccccccCCCCCCCChHHHHHHHhhccCCCcEEEEeCCCchHHHHHHHHHHCCccceeecccc
Q 032621 50 FNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGG 113 (137)
Q Consensus 50 inip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~ra~~~~~~l~~~G~~~v~~l~GG 113 (137)
+.+..+.++|.+.+...-....+.....+ ..-|+.+.+|..+..++...+.+|++=..++..+
T Consensus 39 i~~K~E~~nptGS~K~R~a~~~~~~~~~~-~~~vv~aSsGN~g~a~A~~a~~~G~~~~iv~p~~ 101 (310)
T PRK08246 39 VWLKLEHLQHTGSFKARGAFNRLLAAPVP-AAGVVAASGGNAGLAVAYAAAALGVPATVFVPET 101 (310)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHhhccc-CCeEEEeCCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 67777777777765433223333333222 3345555678888888888888888632334333
No 500
>CHL00101 trpG anthranilate synthase component 2
Probab=24.52 E-value=1.5e+02 Score=20.42 Aligned_cols=24 Identities=4% Similarity=-0.076 Sum_probs=13.2
Q ss_pred EEEEeCCCchHHHHHHHHHHCCcc
Q 032621 82 LVVGCQSGARSLHATADLLGAGFK 105 (137)
Q Consensus 82 iv~~c~~g~ra~~~~~~l~~~G~~ 105 (137)
|+++++.+..+...++.|++.|++
T Consensus 2 iliid~~dsft~~l~~~l~~~g~~ 25 (190)
T CHL00101 2 ILIIDNYDSFTYNLVQSLGELNSD 25 (190)
T ss_pred EEEEECCCchHHHHHHHHHhcCCC
Confidence 455555555555555555555543
Done!