BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032623
(137 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A6W3V3|RL34_MARMS 50S ribosomal protein L34 OS=Marinomonas sp. (strain MWYL1) GN=rpmH
PE=3 SV=1
Length = 44
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 37/43 (86%)
Query: 95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRITA 137
KRTFQPS ++RKRNHGF AR ATKGGR+VIARR A+GR ++A
Sbjct: 2 KRTFQPSVLKRKRNHGFRARMATKGGRQVIARRRARGRKVLSA 44
>sp|Q15MS4|RL34_PSEA6 50S ribosomal protein L34 OS=Pseudoalteromonas atlantica (strain
T6c / ATCC BAA-1087) GN=rpmH PE=3 SV=1
Length = 44
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 37/43 (86%)
Query: 95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRITA 137
KRTFQPS ++RKR+HGF AR ATK GR+VIA R AKGR+R+TA
Sbjct: 2 KRTFQPSNLKRKRSHGFRARMATKNGRKVIANRRAKGRARLTA 44
>sp|A8G7Q1|RL34_SERP5 50S ribosomal protein L34 OS=Serratia proteamaculans (strain 568)
GN=rpmH PE=3 SV=1
Length = 46
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 36/42 (85%)
Query: 95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRIT 136
KRTFQPS ++R R+HGF AR ATK GR+V+ARR AKGRSR+T
Sbjct: 2 KRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRSRLT 43
>sp|A5WBC0|RL34_PSYWF 50S ribosomal protein L34 OS=Psychrobacter sp. (strain PRwf-1)
GN=rpmH PE=3 SV=1
Length = 44
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/42 (73%), Positives = 35/42 (83%)
Query: 95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRIT 136
KRTFQPS I+RKR HGF AR ATK GR+V+ARR AKGR R+T
Sbjct: 2 KRTFQPSVIKRKRTHGFRARMATKKGRQVLARRRAKGRHRLT 43
>sp|Q1QEW7|RL34_PSYCK 50S ribosomal protein L34 OS=Psychrobacter cryohalolentis (strain
K5) GN=rpmH PE=3 SV=1
Length = 44
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/42 (73%), Positives = 35/42 (83%)
Query: 95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRIT 136
KRTFQPS I+RKR HGF AR ATK GR+V+ARR AKGR R+T
Sbjct: 2 KRTFQPSVIKRKRTHGFRARMATKKGRQVLARRRAKGRHRLT 43
>sp|Q4FPR4|RL34_PSYA2 50S ribosomal protein L34 OS=Psychrobacter arcticus (strain DSM
17307 / 273-4) GN=rpmH PE=3 SV=1
Length = 44
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/42 (73%), Positives = 35/42 (83%)
Query: 95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRIT 136
KRTFQPS I+RKR HGF AR ATK GR+V+ARR AKGR R+T
Sbjct: 2 KRTFQPSVIKRKRTHGFRARMATKKGRQVLARRRAKGRHRLT 43
>sp|Q2NQ68|RL34_SODGM 50S ribosomal protein L34 OS=Sodalis glossinidius (strain
morsitans) GN=rpmH PE=3 SV=1
Length = 47
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/42 (69%), Positives = 36/42 (85%)
Query: 95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRIT 136
KRTFQPS ++R R+HGF AR ATK GR+V+ARR AKGR+R+T
Sbjct: 2 KRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRTRLT 43
>sp|A4VS85|RL34_PSEU5 50S ribosomal protein L34 OS=Pseudomonas stutzeri (strain A1501)
GN=rpmH PE=3 SV=1
Length = 44
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 35/42 (83%)
Query: 95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRIT 136
KRTFQPSTI+R R HGF AR ATK GR+V++RR AKGR R+T
Sbjct: 2 KRTFQPSTIKRARTHGFRARMATKNGRQVLSRRRAKGRKRLT 43
>sp|Q7MXZ2|RL34_PHOLL 50S ribosomal protein L34 OS=Photorhabdus luminescens subsp.
laumondii (strain TT01) GN=rpmH PE=3 SV=1
Length = 46
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/42 (69%), Positives = 36/42 (85%)
Query: 95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRIT 136
KRTFQPS ++R R+HGF AR ATK GR+V+ARR AKGR+R+T
Sbjct: 2 KRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRTRLT 43
>sp|B2VCE4|RL34_ERWT9 50S ribosomal protein L34 OS=Erwinia tasmaniensis (strain DSM 17950
/ Et1/99) GN=rpmH PE=3 SV=1
Length = 46
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/42 (69%), Positives = 35/42 (83%)
Query: 95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRIT 136
KRTFQPS ++R R+HGF AR A K GR+V+ARR AKGRSR+T
Sbjct: 2 KRTFQPSVLKRNRSHGFRARMANKNGRQVLARRRAKGRSRLT 43
>sp|B8GRD4|RL34_THISH 50S ribosomal protein L34 OS=Thioalkalivibrio sp. (strain HL-EbGR7)
GN=rpmH PE=3 SV=1
Length = 44
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/42 (69%), Positives = 35/42 (83%)
Query: 95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRIT 136
KRTFQPST++RKR HGF AR AT+GGR+V+A R AKGR R+
Sbjct: 2 KRTFQPSTLKRKRTHGFRARMATRGGRKVLAARRAKGRVRLC 43
>sp|A1T0M6|RL34_PSYIN 50S ribosomal protein L34 OS=Psychromonas ingrahamii (strain 37)
GN=rpmH PE=3 SV=1
Length = 44
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%)
Query: 95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRITA 137
KRTFQPS I+RKR+HGF R ATK GR V+ARR AKGRS ++A
Sbjct: 2 KRTFQPSNIKRKRSHGFRTRMATKNGRNVLARRRAKGRSSLSA 44
>sp|C1DNG0|RL34_AZOVD 50S ribosomal protein L34 OS=Azotobacter vinelandii (strain DJ /
ATCC BAA-1303) GN=rpmH PE=3 SV=1
Length = 44
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/42 (69%), Positives = 35/42 (83%)
Query: 95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRIT 136
KRTFQPST++R R HGF AR ATK GR+V++RR AKGR R+T
Sbjct: 2 KRTFQPSTLKRARTHGFRARMATKNGRQVLSRRRAKGRKRLT 43
>sp|A4Y1A3|RL34_PSEMY 50S ribosomal protein L34 OS=Pseudomonas mendocina (strain ymp)
GN=rpmH PE=3 SV=1
Length = 44
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 34/42 (80%)
Query: 95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRIT 136
KRTFQPSTI+R R HGF AR ATK GR V++RR AKGR R+T
Sbjct: 2 KRTFQPSTIKRARTHGFRARMATKNGRAVLSRRRAKGRKRLT 43
>sp|Q6CYR2|RL34_ERWCT 50S ribosomal protein L34 OS=Erwinia carotovora subsp. atroseptica
(strain SCRI 1043 / ATCC BAA-672) GN=rpmH PE=3 SV=1
Length = 46
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/42 (66%), Positives = 36/42 (85%)
Query: 95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRIT 136
KRTFQPS ++R R+HGF AR ATK GR+V+ARR AKGR+R++
Sbjct: 2 KRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRTRLS 43
>sp|B3PIU4|RL34_CELJU 50S ribosomal protein L34 OS=Cellvibrio japonicus (strain Ueda107)
GN=rpmH PE=3 SV=1
Length = 45
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 34/42 (80%)
Query: 95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRIT 136
KRTFQPS I+R RNHGF AR ATK GR V+ARR AKGR ++T
Sbjct: 2 KRTFQPSNIKRVRNHGFRARMATKNGRLVLARRRAKGRKQLT 43
>sp|Q21DF7|RL34_SACD2 50S ribosomal protein L34 OS=Saccharophagus degradans (strain 2-40
/ ATCC 43961 / DSM 17024) GN=rpmH PE=3 SV=1
Length = 44
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 36/43 (83%)
Query: 95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRITA 137
KRTFQPS ++RKR HGF AR AT GR+V++RR AKGR+R++A
Sbjct: 2 KRTFQPSVLKRKRTHGFRARMATANGRKVLSRRRAKGRARLSA 44
>sp|C4K7P8|RL34_HAMD5 50S ribosomal protein L34 OS=Hamiltonella defensa subsp.
Acyrthosiphon pisum (strain 5AT) GN=rpmH PE=3 SV=1
Length = 46
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/42 (66%), Positives = 35/42 (83%)
Query: 95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRIT 136
KRTFQPS ++R R+HGF AR A K GR+V+ARR AKGR+R+T
Sbjct: 2 KRTFQPSVLKRNRSHGFRARMANKNGRQVLARRRAKGRTRLT 43
>sp|P29436|RL34_PSEAE 50S ribosomal protein L34 OS=Pseudomonas aeruginosa (strain ATCC
15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=rpmH PE=3
SV=2
Length = 44
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/42 (69%), Positives = 35/42 (83%)
Query: 95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRIT 136
KRTFQPST++R R HGF AR ATK GR+V++RR AKGR R+T
Sbjct: 2 KRTFQPSTLKRARVHGFRARMATKNGRQVLSRRRAKGRKRLT 43
>sp|A6VF47|RL34_PSEA7 50S ribosomal protein L34 OS=Pseudomonas aeruginosa (strain PA7)
GN=rpmH PE=3 SV=1
Length = 44
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/42 (69%), Positives = 35/42 (83%)
Query: 95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRIT 136
KRTFQPST++R R HGF AR ATK GR+V++RR AKGR R+T
Sbjct: 2 KRTFQPSTLKRARVHGFRARMATKNGRQVLSRRRAKGRKRLT 43
>sp|A5EY32|RL34_DICNV 50S ribosomal protein L34 OS=Dichelobacter nodosus (strain
VCS1703A) GN=rpmH PE=3 SV=1
Length = 45
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/42 (69%), Positives = 34/42 (80%)
Query: 95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRIT 136
KRTFQPS + RKR HGF AR ATK GR+V++RR AKGR R+T
Sbjct: 3 KRTFQPSNLSRKRTHGFRARMATKNGRQVLSRRRAKGRYRLT 44
>sp|Q477Q1|RL34_DECAR 50S ribosomal protein L34 OS=Dechloromonas aromatica (strain RCB)
GN=rpmH PE=3 SV=1
Length = 44
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/41 (68%), Positives = 32/41 (78%)
Query: 95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRI 135
KRT+QPS +RRKR HGF R TKGGR VIA R AKGR+R+
Sbjct: 2 KRTYQPSVVRRKRTHGFLVRMRTKGGRAVIAARRAKGRTRL 42
>sp|C3K1G4|RL34_PSEFS 50S ribosomal protein L34 OS=Pseudomonas fluorescens (strain SBW25)
GN=rpmH PE=3 SV=1
Length = 44
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/41 (70%), Positives = 34/41 (82%)
Query: 95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRI 135
KRTFQPSTI+R R HGF AR ATK GR V++RR AKGR+R+
Sbjct: 2 KRTFQPSTIKRARTHGFRARMATKNGRAVLSRRRAKGRARL 42
>sp|Q4K394|RL34_PSEF5 50S ribosomal protein L34 OS=Pseudomonas fluorescens (strain Pf-5 /
ATCC BAA-477) GN=rpmH PE=3 SV=1
Length = 44
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/41 (70%), Positives = 34/41 (82%)
Query: 95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRI 135
KRTFQPSTI+R R HGF AR ATK GR V++RR AKGR+R+
Sbjct: 2 KRTFQPSTIKRARTHGFRARMATKNGRAVLSRRRAKGRARL 42
>sp|A1U7J7|RL34_MARAV 50S ribosomal protein L34 OS=Marinobacter aquaeolei (strain ATCC
700491 / DSM 11845 / VT8) GN=rpmH PE=3 SV=1
Length = 44
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 36/43 (83%)
Query: 95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRITA 137
KRTFQPS ++RKR HGF AR AT GR+V++RR AKGR+R++A
Sbjct: 2 KRTFQPSVLKRKRVHGFRARMATANGRKVLSRRRAKGRARLSA 44
>sp|B6IPG6|RL34_RHOCS 50S ribosomal protein L34 OS=Rhodospirillum centenum (strain ATCC
51521 / SW) GN=rpmH PE=3 SV=1
Length = 44
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%)
Query: 95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRITA 137
KRTFQPS + RKR HGF AR AT GGR+V+ARR A+GR R++A
Sbjct: 2 KRTFQPSKLVRKRRHGFRARMATVGGRKVLARRRAQGRKRLSA 44
>sp|Q5QZK0|RL34_IDILO 50S ribosomal protein L34 OS=Idiomarina loihiensis (strain ATCC
BAA-735 / DSM 15497 / L2-TR) GN=rpmH PE=3 SV=1
Length = 44
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 36/43 (83%)
Query: 95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRITA 137
KRTFQPS ++RKR+HGF AR ATK GR+V+ARR A+GR ++A
Sbjct: 2 KRTFQPSVLKRKRSHGFRARMATKNGRKVLARRRARGRKVLSA 44
>sp|B0V5R3|RL34_ACIBY 50S ribosomal protein L34 OS=Acinetobacter baumannii (strain AYE)
GN=rpmH PE=3 SV=1
Length = 44
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/42 (69%), Positives = 34/42 (80%)
Query: 95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRIT 136
KRTFQPS ++RKR HGF AR ATK GR+V+ARR AKGR +T
Sbjct: 2 KRTFQPSELKRKRVHGFRARMATKAGRQVLARRRAKGRHSLT 43
>sp|A3M8Z3|RL34_ACIBT 50S ribosomal protein L34 OS=Acinetobacter baumannii (strain ATCC
17978 / NCDC KC 755) GN=rpmH PE=3 SV=2
Length = 44
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/42 (69%), Positives = 34/42 (80%)
Query: 95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRIT 136
KRTFQPS ++RKR HGF AR ATK GR+V+ARR AKGR +T
Sbjct: 2 KRTFQPSELKRKRVHGFRARMATKAGRQVLARRRAKGRHSLT 43
>sp|B7IBH8|RL34_ACIB5 50S ribosomal protein L34 OS=Acinetobacter baumannii (strain
AB0057) GN=rpmH PE=3 SV=1
Length = 44
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/42 (69%), Positives = 34/42 (80%)
Query: 95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRIT 136
KRTFQPS ++RKR HGF AR ATK GR+V+ARR AKGR +T
Sbjct: 2 KRTFQPSELKRKRVHGFRARMATKAGRQVLARRRAKGRHSLT 43
>sp|B7H343|RL34_ACIB3 50S ribosomal protein L34 OS=Acinetobacter baumannii (strain
AB307-0294) GN=rpmH PE=3 SV=1
Length = 44
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/42 (69%), Positives = 34/42 (80%)
Query: 95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRIT 136
KRTFQPS ++RKR HGF AR ATK GR+V+ARR AKGR +T
Sbjct: 2 KRTFQPSELKRKRVHGFRARMATKAGRQVLARRRAKGRHSLT 43
>sp|Q6F6K7|RL34_ACIAD 50S ribosomal protein L34 OS=Acinetobacter sp. (strain ADP1)
GN=rpmH PE=3 SV=1
Length = 44
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/42 (69%), Positives = 34/42 (80%)
Query: 95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRIT 136
KRTFQPS ++RKR HGF AR ATK GR+V+ARR AKGR +T
Sbjct: 2 KRTFQPSELKRKRVHGFRARMATKAGRQVLARRRAKGRHSLT 43
>sp|Q0VKU5|RL34_ALCBS 50S ribosomal protein L34 OS=Alcanivorax borkumensis (strain SK2 /
ATCC 700651 / DSM 11573) GN=rpmH PE=3 SV=1
Length = 44
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%)
Query: 95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRITA 137
KRTFQPS ++RKR HGF AR ATK GR+++A R AKGR R+ A
Sbjct: 2 KRTFQPSVLKRKRAHGFRARMATKNGRKILAARRAKGRKRLAA 44
>sp|C1D6I1|RL34_LARHH 50S ribosomal protein L34 OS=Laribacter hongkongensis (strain
HLHK9) GN=rpmH PE=3 SV=1
Length = 44
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRITA 137
KRTFQPS ++RKR HGF AR T+GGR VIA R +KGR+R++A
Sbjct: 2 KRTFQPSVVKRKRTHGFRARMKTRGGRAVIAARRSKGRARLSA 44
>sp|Q4ZL08|RL34_PSEU2 50S ribosomal protein L34 OS=Pseudomonas syringae pv. syringae
(strain B728a) GN=rpmH PE=3 SV=1
Length = 44
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/41 (70%), Positives = 33/41 (80%)
Query: 95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRI 135
KRTFQPSTI+R R HGF AR ATK GR V++RR AKGR R+
Sbjct: 2 KRTFQPSTIKRARTHGFRARMATKNGRAVLSRRRAKGRKRL 42
>sp|Q87TR8|RL34_PSESM 50S ribosomal protein L34 OS=Pseudomonas syringae pv. tomato
(strain DC3000) GN=rpmH PE=3 SV=1
Length = 44
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/41 (70%), Positives = 33/41 (80%)
Query: 95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRI 135
KRTFQPSTI+R R HGF AR ATK GR V++RR AKGR R+
Sbjct: 2 KRTFQPSTIKRARTHGFRARMATKNGRAVLSRRRAKGRKRL 42
>sp|Q48BE9|RL34_PSE14 50S ribosomal protein L34 OS=Pseudomonas syringae pv. phaseolicola
(strain 1448A / Race 6) GN=rpmH PE=3 SV=1
Length = 44
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/41 (70%), Positives = 33/41 (80%)
Query: 95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRI 135
KRTFQPSTI+R R HGF AR ATK GR V++RR AKGR R+
Sbjct: 2 KRTFQPSTIKRARTHGFRARMATKNGRAVLSRRRAKGRKRL 42
>sp|P0A162|RL34_PSEPU 50S ribosomal protein L34 OS=Pseudomonas putida GN=rpmH PE=3 SV=1
Length = 44
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/41 (70%), Positives = 33/41 (80%)
Query: 95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRI 135
KRTFQPSTI+R R HGF AR ATK GR V++RR AKGR R+
Sbjct: 2 KRTFQPSTIKRARTHGFRARMATKNGRAVLSRRRAKGRKRL 42
>sp|P0A161|RL34_PSEPK 50S ribosomal protein L34 OS=Pseudomonas putida (strain KT2440)
GN=rpmH PE=3 SV=1
Length = 44
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/41 (70%), Positives = 33/41 (80%)
Query: 95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRI 135
KRTFQPSTI+R R HGF AR ATK GR V++RR AKGR R+
Sbjct: 2 KRTFQPSTIKRARTHGFRARMATKNGRAVLSRRRAKGRKRL 42
>sp|B0KEU8|RL34_PSEPG 50S ribosomal protein L34 OS=Pseudomonas putida (strain GB-1)
GN=rpmH PE=3 SV=1
Length = 44
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/41 (70%), Positives = 33/41 (80%)
Query: 95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRI 135
KRTFQPSTI+R R HGF AR ATK GR V++RR AKGR R+
Sbjct: 2 KRTFQPSTIKRARTHGFRARMATKNGRAVLSRRRAKGRKRL 42
>sp|Q1I2H1|RL34_PSEE4 50S ribosomal protein L34 OS=Pseudomonas entomophila (strain L48)
GN=rpmH PE=3 SV=1
Length = 44
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/41 (70%), Positives = 33/41 (80%)
Query: 95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRI 135
KRTFQPSTI+R R HGF AR ATK GR V++RR AKGR R+
Sbjct: 2 KRTFQPSTIKRARTHGFRARMATKNGRAVLSRRRAKGRKRL 42
>sp|B0VQP8|RL34_ACIBS 50S ribosomal protein L34 OS=Acinetobacter baumannii (strain SDF)
GN=rpmH PE=3 SV=1
Length = 44
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/42 (69%), Positives = 34/42 (80%)
Query: 95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRIT 136
KRTFQPS ++RKR HGF AR ATK GR+V+ARR AKGR +T
Sbjct: 2 KRTFQPSELKRKRIHGFRARMATKAGRQVLARRRAKGRHSLT 43
>sp|A6LNH1|RL34_THEM4 50S ribosomal protein L34 OS=Thermosipho melanesiensis (strain
BI429 / DSM 12029) GN=rpmH PE=3 SV=1
Length = 44
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 32/43 (74%)
Query: 95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRITA 137
KRT+QPS I+RKR HGF ARK T GGRRV+ R KGR R+T
Sbjct: 2 KRTYQPSRIKRKRTHGFLARKKTTGGRRVLKNRRRKGRWRLTV 44
>sp|B1LUP6|RL34_METRJ 50S ribosomal protein L34 OS=Methylobacterium radiotolerans (strain
ATCC 27329 / DSM 1819 / JCM 2831) GN=rpmH PE=3 SV=1
Length = 44
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 34/43 (79%)
Query: 95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRITA 137
KRT+QPS + RKR HGF AR AT GGR+VIARR A GR R++A
Sbjct: 2 KRTYQPSKLVRKRRHGFRARMATAGGRKVIARRRAHGRKRLSA 44
>sp|B0URU6|RL34_HAES2 50S ribosomal protein L34 OS=Haemophilus somnus (strain 2336)
GN=rpmH PE=3 SV=1
Length = 44
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%)
Query: 95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRITA 137
KRTFQPS ++R R HGF AR ATK GR+V+ARR AKGR ++A
Sbjct: 2 KRTFQPSVLKRNRTHGFRARMATKNGRQVLARRRAKGRKSLSA 44
>sp|Q0I0Y8|RL34_HAES1 50S ribosomal protein L34 OS=Haemophilus somnus (strain 129Pt)
GN=rpmH PE=3 SV=1
Length = 44
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%)
Query: 95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRITA 137
KRTFQPS ++R R HGF AR ATK GR+V+ARR AKGR ++A
Sbjct: 2 KRTFQPSVLKRNRTHGFRARMATKNGRQVLARRRAKGRKSLSA 44
>sp|Q7MQK3|RL34_VIBVY 50S ribosomal protein L34 OS=Vibrio vulnificus (strain YJ016)
GN=rpmH PE=3 SV=1
Length = 46
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 35/45 (77%)
Query: 92 LFPKRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRIT 136
+ KRTFQPS ++RKR HGF AR ATK GR+VI R AKGR+R++
Sbjct: 1 MATKRTFQPSVLKRKRTHGFRARMATKNGRKVINARRAKGRARLS 45
>sp|Q8DDI4|RL34_VIBVU 50S ribosomal protein L34 OS=Vibrio vulnificus (strain CMCP6)
GN=rpmH PE=3 SV=1
Length = 46
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 35/45 (77%)
Query: 92 LFPKRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRIT 136
+ KRTFQPS ++RKR HGF AR ATK GR+VI R AKGR+R++
Sbjct: 1 MATKRTFQPSVLKRKRTHGFRARMATKNGRKVINARRAKGRARLS 45
>sp|P66245|RL34_PASMU 50S ribosomal protein L34 OS=Pasteurella multocida (strain Pm70)
GN=rpmH PE=3 SV=1
Length = 44
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%)
Query: 95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRITA 137
KRTFQPS ++R R HGF AR ATK GR+V+ARR AKGR ++A
Sbjct: 2 KRTFQPSVLKRSRTHGFRARMATKNGRQVLARRRAKGRKSLSA 44
>sp|Q65VB9|RL34_MANSM 50S ribosomal protein L34 OS=Mannheimia succiniciproducens (strain
MBEL55E) GN=rpmH PE=3 SV=1
Length = 44
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%)
Query: 95 KRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRITA 137
KRTFQPS ++R R HGF AR ATK GR+V+ARR AKGR ++A
Sbjct: 2 KRTFQPSVLKRSRTHGFRARMATKNGRQVLARRRAKGRKSLSA 44
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.132 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,954,947
Number of Sequences: 539616
Number of extensions: 1688696
Number of successful extensions: 4285
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 3547
Number of HSP's gapped (non-prelim): 749
length of query: 137
length of database: 191,569,459
effective HSP length: 102
effective length of query: 35
effective length of database: 136,528,627
effective search space: 4778501945
effective search space used: 4778501945
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)