Query 032623
Match_columns 137
No_of_seqs 139 out of 625
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 05:36:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032623.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032623hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r8s_2 50S ribosomal protein L 99.9 1.1E-24 3.8E-29 141.4 3.6 44 94-137 1-44 (46)
2 3v2d_7 50S ribosomal protein L 99.9 2.4E-24 8.1E-29 141.4 3.0 44 94-137 1-44 (49)
3 2ftc_Q L34MT, MRP-L34, 39S rib 99.8 1.7E-21 5.7E-26 122.2 3.2 38 98-135 1-38 (38)
4 3bbo_4 Ribosomal protein L34; 99.6 3.5E-17 1.2E-21 127.2 0.5 39 99-137 102-140 (152)
5 4gox_A Polyketide synthase; ol 8.1 1.4E+02 0.0048 22.1 1.3 17 6-22 32-48 (313)
6 3izx_D Viral structural protei 8.1 2E+02 0.007 25.2 2.5 24 60-83 103-126 (448)
7 1ztd_A Hypothetical protein PF 7.3 2.5E+02 0.0084 21.2 2.3 18 3-20 12-29 (133)
8 4gbm_A CURM sulfotransferase; 7.1 1.7E+02 0.0058 21.9 1.4 16 7-22 41-56 (323)
9 1dv0_A DNA repair protein HHR2 6.5 1.7E+02 0.006 17.4 1.0 15 53-67 2-16 (47)
10 3j20_S 30S ribosomal protein S 6.1 2.6E+02 0.0087 18.6 1.7 26 99-133 41-66 (67)
No 1
>3r8s_2 50S ribosomal protein L34; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1vs8_2 1vs6_2 2aw4_2 2awb_2 1vt2_2 2i2v_2 2j28_2 2i2t_2* 2qao_2* 2qba_2* 2qbc_2* 2qbe_2 2qbg_2 2qbi_2* 2qbk_2* 2qov_2 2qox_2 2qoz_2* 2qp1_2* 2rdo_2 ...
Probab=99.90 E-value=1.1e-24 Score=141.39 Aligned_cols=44 Identities=66% Similarity=0.993 Sum_probs=42.7
Q ss_pred CCCCCCCCccchhhhhhhhhhcCChhhHHHHHHHHHhCccccCC
Q 032623 94 PKRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRITA 137 (137)
Q Consensus 94 ~KrT~qPs~~kRkR~hGFraRm~T~~GRkVL~rRR~KGRk~Lt~ 137 (137)
+|||||||+++|+|+|||++||+|++||+||++||+|||++|+|
T Consensus 1 mKrTyQPs~~kRkr~hGFraRm~T~~GRkvL~rRR~KGRk~Ls~ 44 (46)
T 3r8s_2 1 MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTV 44 (46)
T ss_dssp CCCSCCCCHHHHHHHHSHHHHHTSHHHHHHHHHHHHHTCSCSSC
T ss_pred CCCCCCCCceeechhhcHHHHccCcchhHHHHHHHHcCCceecc
Confidence 48999999999999999999999999999999999999999986
No 2
>3v2d_7 50S ribosomal protein L34; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_Z 2hgj_6 2hgq_6 2hgu_6 1vsa_Z 2j03_7 2jl6_7 2jl8_7 2v47_7 2v49_7 2wdi_7 2wdj_7 2wdl_7 2wdn_7 2wh2_7 2wh4_7 2wrj_7 2wrl_7 2wro_7 2wrr_7 ...
Probab=99.89 E-value=2.4e-24 Score=141.43 Aligned_cols=44 Identities=52% Similarity=0.822 Sum_probs=42.7
Q ss_pred CCCCCCCCccchhhhhhhhhhcCChhhHHHHHHHHHhCccccCC
Q 032623 94 PKRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRITA 137 (137)
Q Consensus 94 ~KrT~qPs~~kRkR~hGFraRm~T~~GRkVL~rRR~KGRk~Lt~ 137 (137)
+|||||||+++|+|+|||++||+|++||+||++||+|||++|+|
T Consensus 1 MKRTyQPs~~kRkr~hGFraRm~T~~GRkVL~rRR~KGRk~Ls~ 44 (49)
T 3v2d_7 1 MKRTWQPNRRKRAKTHGFRARMRTPGGRKVLKRRRQKGRWRLTP 44 (49)
T ss_dssp CCCSCCCCHHHHHHHHSHHHHHHSHHHHHHHHHHHHHTCSCSSC
T ss_pred CCCCCCCCceeechhhcHHHHccCcchhHHHHHHHHcCCcEeee
Confidence 48999999999999999999999999999999999999999986
No 3
>2ftc_Q L34MT, MRP-L34, 39S ribosomal protein L34, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=99.83 E-value=1.7e-21 Score=122.21 Aligned_cols=38 Identities=47% Similarity=0.840 Sum_probs=37.3
Q ss_pred CCCCccchhhhhhhhhhcCChhhHHHHHHHHHhCcccc
Q 032623 98 FQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRI 135 (137)
Q Consensus 98 ~qPs~~kRkR~hGFraRm~T~~GRkVL~rRR~KGRk~L 135 (137)
||||+++|+|+|||++||+|++||+||++||+|||++|
T Consensus 1 yqPs~~kRkr~hGFraRm~T~~GRkvl~rRR~KGR~~L 38 (38)
T 2ftc_Q 1 YQPSNIKRKNKHGWVRRLSTPAGVQVILRRMLKGRKSL 38 (38)
T ss_pred CCCccccchhhhcHHHHccChhhHHHHHHHHHcCcccC
Confidence 89999999999999999999999999999999999986
No 4
>3bbo_4 Ribosomal protein L34; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.62 E-value=3.5e-17 Score=127.20 Aligned_cols=39 Identities=38% Similarity=0.544 Sum_probs=36.2
Q ss_pred CCCccchhhhhhhhhhcCChhhHHHHHHHHHhCccccCC
Q 032623 99 QPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRSRITA 137 (137)
Q Consensus 99 qPs~~kRkR~hGFraRm~T~~GRkVL~rRR~KGRk~Lt~ 137 (137)
+|+++||||+|||++||+|++||+||+|||+||||+|++
T Consensus 102 ~pS~~kRkR~HGFraRM~Tk~GRkVL~rRRaKGRk~Ls~ 140 (152)
T 3bbo_4 102 SRSRKSLARTHGFRLRMSTTSGRALLKRRRAKGRKILCT 140 (152)
T ss_dssp --CTTHHHHTSCHHHHHHSGGGTTTTHHHHTTTCSCSCC
T ss_pred CCccceeehhhcHHHHhcChhhHHHHHHHHHhCCcEEee
Confidence 479999999999999999999999999999999999986
No 5
>4gox_A Polyketide synthase; olefin synthase, hydrocarbon, sulfotran PAPS, PAP, 3'phosphoadenosine-5'phosphosulfate, transferase; HET: A3P; 2.15A {Synechococcus SP}
Probab=8.07 E-value=1.4e+02 Score=22.12 Aligned_cols=17 Identities=29% Similarity=0.614 Sum_probs=13.1
Q ss_pred HHHhhHHHHHHHHhcCC
Q 032623 6 LIRTGASLLNRLVSSKP 22 (137)
Q Consensus 6 L~RaGasLl~Rl~~~s~ 22 (137)
+=|+|.+||.+++...|
T Consensus 32 ~pRSGTTlL~~iL~~Hp 48 (313)
T 4gox_A 32 SPRSGSTLLRVMLAGHP 48 (313)
T ss_dssp CTTSSHHHHHHHHHTST
T ss_pred CCCCHHHHHHHHHHcCC
Confidence 34999999999965543
No 6
>3izx_D Viral structural protein 5; cytoplasmic polyhedrosis virus, 3D reconstruction, cryoem, F model; 3.10A {Bombyx mori cypovirus 1} PDB: 3j17_D* 3iz3_D
Probab=8.06 E-value=2e+02 Score=25.19 Aligned_cols=24 Identities=29% Similarity=0.585 Sum_probs=19.5
Q ss_pred hhhccCCcccCCCCCCcccccCCC
Q 032623 60 TRVASQGFLYPSGLPSLEFYLPNG 83 (137)
Q Consensus 60 ~~l~s~~~l~p~glpsl~~~~p~~ 83 (137)
.+|...||+||.--|-..|+-|..
T Consensus 103 aRLg~DGvlYnnE~~~~~fYs~~a 126 (448)
T 3izx_D 103 ARLGLDGVIYNSETINIPFYDPAA 126 (448)
T ss_dssp CCBBTTSCBCSSCCTTCCBCCHHH
T ss_pred eeeccceeeccCCCCCccccCHHH
Confidence 456779999999999998877654
No 7
>1ztd_A Hypothetical protein PFU-631545-001; structural genomics, southeast collaboratory for structural genomics, secsg; 2.00A {Pyrococcus furiosus} SCOP: a.149.1.2
Probab=7.27 E-value=2.5e+02 Score=21.16 Aligned_cols=18 Identities=44% Similarity=0.458 Sum_probs=15.8
Q ss_pred hhHHHHhhHHHHHHHHhc
Q 032623 3 TKTLIRTGASLLNRLVSS 20 (137)
Q Consensus 3 ~ktL~RaGasLl~Rl~~~ 20 (137)
.|.|++-|-||+|=+++.
T Consensus 12 dK~LakfGDSLvNfl~Sl 29 (133)
T 1ztd_A 12 DKGLAKFGDSLINFLYSL 29 (133)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHhHHHHHHHHHH
Confidence 589999999999998754
No 8
>4gbm_A CURM sulfotransferase; polyketide synthase, curacin, PAP, PAPS; HET: A3P P6G; 1.62A {Moorea producta}
Probab=7.11 E-value=1.7e+02 Score=21.93 Aligned_cols=16 Identities=25% Similarity=0.547 Sum_probs=12.8
Q ss_pred HHhhHHHHHHHHhcCC
Q 032623 7 IRTGASLLNRLVSSKP 22 (137)
Q Consensus 7 ~RaGasLl~Rl~~~s~ 22 (137)
=|+|.+||.+++...|
T Consensus 41 pRSGTTlL~~iL~~Hp 56 (323)
T 4gbm_A 41 PRSGSTLLRVMLAGHS 56 (323)
T ss_dssp TTSSHHHHHHHHHTCT
T ss_pred CCCHHHHHHHHHHcCC
Confidence 4999999999965544
No 9
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=6.49 E-value=1.7e+02 Score=17.43 Aligned_cols=15 Identities=27% Similarity=0.585 Sum_probs=10.6
Q ss_pred CCchhhhhhhccCCc
Q 032623 53 SSDSVSLTRVASQGF 67 (137)
Q Consensus 53 ~~d~~s~~~l~s~~~ 67 (137)
|.|-+.|++|.++||
T Consensus 2 ~~e~eaI~rL~~mGF 16 (47)
T 1dv0_A 2 SQEKEAIERLKALGF 16 (47)
T ss_dssp -CCHHHHTTTTTTTC
T ss_pred cchHHHHHHHHHcCC
Confidence 456677888888776
No 10
>3j20_S 30S ribosomal protein S17E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=6.07 E-value=2.6e+02 Score=18.59 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=20.1
Q ss_pred CCCccchhhhhhhhhhcCChhhHHHHHHHHHhCcc
Q 032623 99 QPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRS 133 (137)
Q Consensus 99 qPs~~kRkR~hGFraRm~T~~GRkVL~rRR~KGRk 133 (137)
-||++-|.+--||..| |.+|..+|+.
T Consensus 41 i~SKklRNkIAGYvT~---------l~k~~~~g~~ 66 (67)
T 3j20_S 41 VTSKKIRNRIAGYVTK---------LVRMKMEGKI 66 (67)
T ss_dssp CSCHHHHHHHHHHHHH---------HHHHHHHTCC
T ss_pred ccchhhhHHHHHHHHH---------HHHHHhccCC
Confidence 5788999999999887 4566777753
Done!