BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032626
(137 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SZX9|RL92_ARATH 60S ribosomal protein L9-2 OS=Arabidopsis thaliana GN=RPL9D PE=2
SV=1
Length = 194
Score = 225 bits (573), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 105/126 (83%), Positives = 117/126 (92%)
Query: 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MKTILSSETMDIPDGV +K+NAKVIEVEGPRGKL+RDFKHLNLDF L+ D+ TGKR+LKI
Sbjct: 1 MKTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKI 60
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNF 120
D+WFGSRKTSA+IRTALSHV NLI GVT+G+ Y+MRFVYAHFPINASI NNK+IEIRNF
Sbjct: 61 DSWFGSRKTSASIRTALSHVDNLIAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNF 120
Query: 121 LGEKKV 126
LGEKKV
Sbjct: 121 LGEKKV 126
>sp|P30707|RL9_PEA 60S ribosomal protein L9 OS=Pisum sativum GN=RPL9 PE=2 SV=1
Length = 193
Score = 224 bits (572), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 110/126 (87%), Positives = 118/126 (93%), Gaps = 1/126 (0%)
Query: 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MKTILSSETM+IPDGV +K+NAKVIEVEGPRGKL RDFKHLNLDF L+TDE GK+KLKI
Sbjct: 1 MKTILSSETMNIPDGVTIKVNAKVIEVEGPRGKLVRDFKHLNLDFDLITDE-NGKKKLKI 59
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNF 120
DAWFGSRKTSAAIRTALSHV NLITGVTKG+RYKMRFVYA FPINASI N+NK+IEIRNF
Sbjct: 60 DAWFGSRKTSAAIRTALSHVENLITGVTKGFRYKMRFVYADFPINASITNDNKSIEIRNF 119
Query: 121 LGEKKV 126
LGEKKV
Sbjct: 120 LGEKKV 125
>sp|P49209|RL91_ARATH 60S ribosomal protein L9-1 OS=Arabidopsis thaliana GN=RPL9B PE=2
SV=3
Length = 194
Score = 222 bits (565), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 104/126 (82%), Positives = 117/126 (92%)
Query: 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MKTILSSETMDIPD V +K++AKVIEVEGPRGKL RDFKHLNLDF L+ D ETGK+KLKI
Sbjct: 1 MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNF 120
D+WFG+RKTSA+IRTALSHV NLI+GVT+G+RYKMRFVYAHFPINASIG + K+IEIRNF
Sbjct: 61 DSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNF 120
Query: 121 LGEKKV 126
LGEKKV
Sbjct: 121 LGEKKV 126
>sp|P49210|RL9_ORYSJ 60S ribosomal protein L9 OS=Oryza sativa subsp. japonica GN=RPL9
PE=2 SV=3
Length = 190
Score = 205 bits (522), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 97/126 (76%), Positives = 112/126 (88%), Gaps = 4/126 (3%)
Query: 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MKTIL+SETM+IP+GV V++ AKV+ VEGPRGKL+R+FKHLNLDF L+ G RKL++
Sbjct: 1 MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLE----GGRKLQV 56
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNF 120
DAWFG+R+T AAIRTA+SHV NLITGVTKGYRYKMRFVYAHFPINASI N+N AIEIRNF
Sbjct: 57 DAWFGTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNF 116
Query: 121 LGEKKV 126
LGEKKV
Sbjct: 117 LGEKKV 122
>sp|Q90YW0|RL9_ICTPU 60S ribosomal protein L9 OS=Ictalurus punctatus GN=rpl9 PE=2 SV=1
Length = 192
Score = 146 bits (369), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 67/124 (54%), Positives = 89/124 (71%), Gaps = 3/124 (2%)
Query: 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MKTILS++T+DIPD V V + + + V+GPRG L R+F H+NL+ L+ ++ +KL++
Sbjct: 1 MKTILSTQTVDIPDNVDVTLKGRTVSVKGPRGVLRREFNHINLELRLLGKKQ---KKLRV 57
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNF 120
D W+G+RK A +RT SHV N+I GVT G+RYKMR VYAHFPIN I +EIRNF
Sbjct: 58 DKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQETGSLVEIRNF 117
Query: 121 LGEK 124
LGEK
Sbjct: 118 LGEK 121
>sp|P51410|RL9_MOUSE 60S ribosomal protein L9 OS=Mus musculus GN=Rpl9 PE=2 SV=2
Length = 192
Score = 146 bits (369), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 66/124 (53%), Positives = 91/124 (73%), Gaps = 3/124 (2%)
Query: 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MKTILS++T+DIP+ V++ + + + V+GPRG L RDF H+N++ L+ + K++L++
Sbjct: 1 MKTILSNQTVDIPENVEITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRV 57
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNF 120
D W+G+RK A +RT SHV N+I GVT G+RYKMR VYAHFPIN I N +EIRNF
Sbjct: 58 DKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNF 117
Query: 121 LGEK 124
LGEK
Sbjct: 118 LGEK 121
>sp|O02376|RL9_HAECO 60S ribosomal protein L9 (Fragment) OS=Haemonchus contortus PE=2
SV=1
Length = 141
Score = 146 bits (368), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 67/126 (53%), Positives = 89/126 (70%), Gaps = 5/126 (3%)
Query: 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MK + S++T+D PDGV + +V+ V GPRG L RDF+HL+++ E GK +L++
Sbjct: 1 MKLVESNDTVDFPDGVTFTVKNRVVHVTGPRGTLKRDFRHLHMEM-----ERVGKNQLRV 55
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNF 120
WFG RK AAIRT SH+ N+I GVTKG+RYKMR VYAHFPIN ++ + + +EIRNF
Sbjct: 56 RKWFGVRKEIAAIRTVCSHIQNMIKGVTKGFRYKMRSVYAHFPINVTLQDGGRTVEIRNF 115
Query: 121 LGEKKV 126
LGEK V
Sbjct: 116 LGEKIV 121
>sp|Q5IFJ7|RL9_MACFA 60S ribosomal protein L9 OS=Macaca fascicularis GN=RPL9 PE=2 SV=1
Length = 192
Score = 145 bits (367), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 67/124 (54%), Positives = 90/124 (72%), Gaps = 3/124 (2%)
Query: 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MKTILS++T+DIP+ V + + + + V+GPRG L RDF H+N++ L+ + K++L++
Sbjct: 1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRV 57
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNF 120
D W+G+RK A IRT SHV N+I GVT G+RYKMR VYAHFPIN I N +EIRNF
Sbjct: 58 DKWWGNRKELATIRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNF 117
Query: 121 LGEK 124
LGEK
Sbjct: 118 LGEK 121
>sp|Q5R9Q7|RL9_PONAB 60S ribosomal protein L9 OS=Pongo abelii GN=RPL9 PE=2 SV=1
Length = 192
Score = 145 bits (366), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 66/124 (53%), Positives = 90/124 (72%), Gaps = 3/124 (2%)
Query: 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MKTILS++T+DIP+ V + + + + V+GPRG L RDF H+N++ L+ + K++L++
Sbjct: 1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRV 57
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNF 120
D W+G+RK A +RT SHV N+I GVT G+RYKMR VYAHFPIN I N +EIRNF
Sbjct: 58 DEWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNF 117
Query: 121 LGEK 124
LGEK
Sbjct: 118 LGEK 121
>sp|Q3SYR7|RL9_BOVIN 60S ribosomal protein L9 OS=Bos taurus GN=RPL9 PE=2 SV=1
Length = 192
Score = 145 bits (366), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 66/124 (53%), Positives = 90/124 (72%), Gaps = 3/124 (2%)
Query: 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MKTILS++T+DIP+ V + + + + V+GPRG L RDF H+N++ L+ + K++L++
Sbjct: 1 MKTILSNQTVDIPENVDINLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRV 57
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNF 120
D W+G+RK A +RT SHV N+I GVT G+RYKMR VYAHFPIN I N +EIRNF
Sbjct: 58 DKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNF 117
Query: 121 LGEK 124
LGEK
Sbjct: 118 LGEK 121
>sp|P17077|RL9_RAT 60S ribosomal protein L9 OS=Rattus norvegicus GN=Rpl9 PE=1 SV=1
Length = 192
Score = 145 bits (366), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 66/124 (53%), Positives = 90/124 (72%), Gaps = 3/124 (2%)
Query: 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MKTILS++T+DIP+ V + + + + V+GPRG L RDF H+N++ L+ + K++L++
Sbjct: 1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRV 57
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNF 120
D W+G+RK A +RT SHV N+I GVT G+RYKMR VYAHFPIN I N +EIRNF
Sbjct: 58 DKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNF 117
Query: 121 LGEK 124
LGEK
Sbjct: 118 LGEK 121
>sp|P32969|RL9_HUMAN 60S ribosomal protein L9 OS=Homo sapiens GN=RPL9 PE=1 SV=1
Length = 192
Score = 145 bits (366), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 66/124 (53%), Positives = 90/124 (72%), Gaps = 3/124 (2%)
Query: 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MKTILS++T+DIP+ V + + + + V+GPRG L RDF H+N++ L+ + K++L++
Sbjct: 1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRV 57
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNF 120
D W+G+RK A +RT SHV N+I GVT G+RYKMR VYAHFPIN I N +EIRNF
Sbjct: 58 DKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNF 117
Query: 121 LGEK 124
LGEK
Sbjct: 118 LGEK 121
>sp|Q963B7|RL9_SPOFR 60S ribosomal protein L9 OS=Spodoptera frugiperda GN=RpL9 PE=2 SV=1
Length = 190
Score = 140 bits (352), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 64/124 (51%), Positives = 88/124 (70%), Gaps = 5/124 (4%)
Query: 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MK I++++ + IP+G+ V + ++++ V+GPRG L R+FKHL +D ++ R LK+
Sbjct: 1 MKQIVANQKVKIPEGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-----RVLKV 55
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNF 120
+ WFGS+K AA+RT SHV N+I GVTKG++YKMR VYAHFPIN N IEIRNF
Sbjct: 56 EKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRSVYAHFPINCVTTEGNSVIEIRNF 115
Query: 121 LGEK 124
LGEK
Sbjct: 116 LGEK 119
>sp|P50882|RL9_DROME 60S ribosomal protein L9 OS=Drosophila melanogaster GN=RpL9 PE=1
SV=2
Length = 190
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/124 (53%), Positives = 85/124 (68%), Gaps = 5/124 (4%)
Query: 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
M+TI S++ + IP +K + A+V+ + G RG L R FKHL LD + M D KR LK+
Sbjct: 1 MRTINSNQCVKIPKDIKASVKARVVTITGTRGTLKRSFKHLALDMY-MPD----KRTLKV 55
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNF 120
+ WFG++K AA+RT SH+ N+I GVT G++YKMR VYAHFPIN NN IEIRNF
Sbjct: 56 EKWFGTKKELAAVRTVCSHIENMIKGVTFGFQYKMRAVYAHFPINCVTSENNTVIEIRNF 115
Query: 121 LGEK 124
LGEK
Sbjct: 116 LGEK 119
>sp|Q54XI5|RL9_DICDI 60S ribosomal protein L9 OS=Dictyostelium discoideum GN=rpl9 PE=1
SV=2
Length = 188
Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 64/138 (46%), Positives = 92/138 (66%), Gaps = 8/138 (5%)
Query: 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MK I SS + IP+ V V + + ++V GPRG LS+ F H ++D +L+ GK++L +
Sbjct: 1 MKVINSSRKVQIPENVTVDVKGRSVKVTGPRGTLSKSFDHASVDINLV-----GKKELTV 55
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNF 120
D WFG+RK A I+T S + N+ITGVTKGY YKMRFVYAHFPIN ++ + + +EIRNF
Sbjct: 56 DLWFGNRKQIACIKTITSIIENMITGVTKGYEYKMRFVYAHFPINVAVTDGGRVVEIRNF 115
Query: 121 LGEK---KVPFFNSISLF 135
GEK ++ + I+ +
Sbjct: 116 FGEKIVRRIELLDGITCY 133
>sp|Q95Y90|RL9_CAEEL 60S ribosomal protein L9 OS=Caenorhabditis elegans GN=rpl-9 PE=1
SV=1
Length = 189
Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 64/131 (48%), Positives = 89/131 (67%), Gaps = 8/131 (6%)
Query: 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MK I S++T+ P+GV + +++ V GPRG + +DF+HL+++ E GK L++
Sbjct: 1 MKLIESNDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEM-----ERIGKSTLRV 55
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNF 120
WFG RK AAIRT SH+ N+I GVT G+RYKMR VYAHFPIN ++ + N+ +EIRNF
Sbjct: 56 RKWFGVRKELAAIRTVCSHIKNMIKGVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIRNF 115
Query: 121 LGEK---KVPF 128
LGEK +VP
Sbjct: 116 LGEKIVRRVPL 126
>sp|P51401|RL9B_YEAST 60S ribosomal protein L9-B OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPL9B PE=1 SV=1
Length = 191
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/142 (45%), Positives = 96/142 (67%), Gaps = 10/142 (7%)
Query: 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MK I + + ++IP+GV V I +++++V GPRG L+++ KH+++ F + + +K+
Sbjct: 1 MKYIQTEQQIEIPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTF-----TKVNNQLIKV 55
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKA--IEIR 118
G RK AA+RT S V N+ITGVTKGY+YKMR+VYAHFPIN +I + A IE+R
Sbjct: 56 AVHNGDRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVR 115
Query: 119 NFLGEKK---VPFFNSISLFFS 137
NFLG+KK VP + +++ FS
Sbjct: 116 NFLGDKKIRNVPVRDGVTIEFS 137
>sp|P05738|RL9A_YEAST 60S ribosomal protein L9-A OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPL9A PE=1 SV=2
Length = 191
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/142 (44%), Positives = 97/142 (68%), Gaps = 10/142 (7%)
Query: 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MK I + + +++P+GV V I +++++V GPRG L+++ KH+++ F + ++ +K+
Sbjct: 1 MKYIQTEQQIEVPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTFTKVNNQ-----LIKV 55
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKA--IEIR 118
G RK AA+RT S V N+ITGVTKGY+YKMR+VYAHFPIN +I + A IE+R
Sbjct: 56 AVHNGGRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVR 115
Query: 119 NFLGEKK---VPFFNSISLFFS 137
NFLG+KK VP + +++ FS
Sbjct: 116 NFLGDKKIRNVPVRDGVTIEFS 137
>sp|O74905|RL9B_SCHPO 60S ribosomal protein L9-B OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rpl9b PE=3 SV=1
Length = 189
Score = 120 bits (300), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 56/123 (45%), Positives = 81/123 (65%), Gaps = 6/123 (4%)
Query: 2 KTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKID 61
+ I ET+ IP+GV V I A+++ V+GPRG L ++ + ++++ + +K
Sbjct: 3 RDIYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELKKQGN------TIKFI 56
Query: 62 AWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFL 121
W GSRK +A IRTA S + N+I GVT+G+RYKMR VYAHFPIN ++ N +EIRNFL
Sbjct: 57 VWHGSRKHNACIRTAYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFL 116
Query: 122 GEK 124
GE+
Sbjct: 117 GER 119
>sp|Q10232|RL9A_SCHPO 60S ribosomal protein L9-A OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rpl9a PE=3 SV=1
Length = 190
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 78/123 (63%), Gaps = 6/123 (4%)
Query: 2 KTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKID 61
+ I ET+ IP GV V I A+ + V GPRG L ++ +H++++ + +K
Sbjct: 3 RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKKQGN------TIKFI 56
Query: 62 AWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFL 121
W GSRK +A IR+ S + N+I GVT+G+RYKMR VYAHFPIN ++ N +EIRNFL
Sbjct: 57 VWHGSRKHNACIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFL 116
Query: 122 GEK 124
GE+
Sbjct: 117 GER 119
>sp|A2BMD5|RL6_HYPBU 50S ribosomal protein L6P OS=Hyperthermus butylicus (strain DSM
5456 / JCM 9403) GN=rpl6p PE=3 SV=1
Length = 186
Score = 108 bits (271), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 83/124 (66%), Gaps = 5/124 (4%)
Query: 2 KTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHL-NLDFHLMTDEETGKRKLKI 60
K + +E + +P+GV+V I+ + V+GP+G+L+RDF H N+ L DEE +K+ +
Sbjct: 3 KAVYVAEEVRVPEGVEVSIDGLKVTVKGPKGELTRDFSHARNIVIRLDEDEEG--KKVVV 60
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNF 120
+A+F +R+ A + T +H+ N+ITGVTKG+RYK++ VY+HFP+ + + IE NF
Sbjct: 61 EAYFANRRVKALVGTIAAHIENMITGVTKGFRYKLKIVYSHFPVTVKVQGDKVVIE--NF 118
Query: 121 LGEK 124
LGEK
Sbjct: 119 LGEK 122
>sp|Q22AX5|RL9_TETTS 60S ribosomal protein L9 OS=Tetrahymena thermophila (strain SB210)
GN=RPL9 PE=1 SV=1
Length = 188
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 79/126 (62%), Gaps = 5/126 (3%)
Query: 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
M+ +L+ + IPD V + +V+EV+GP G + R F++ ++D T + +K+
Sbjct: 1 MRHLLTEVNVPIPDKVTITAKQRVVEVKGPLGTIKRAFRYASVDIQKPTADN-----VKL 55
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNF 120
W SRK A +++ S + N+I GVT+GY++KM+ +AHFPI ++ + +IEI++F
Sbjct: 56 QIWQASRKERAVLQSIASQIKNMIRGVTEGYKFKMKLAFAHFPIQEAVAKDGSSIEIKHF 115
Query: 121 LGEKKV 126
LGEK++
Sbjct: 116 LGEKRI 121
>sp|A3DNC3|RL6_STAMF 50S ribosomal protein L6P OS=Staphylothermus marinus (strain ATCC
43588 / DSM 3639 / F1) GN=rpl6p PE=3 SV=1
Length = 185
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 76/117 (64%), Gaps = 5/117 (4%)
Query: 8 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSR 67
E +DIP+ V V+IN ++V GP+G + RDF H+ +++ +E K + ++ +F R
Sbjct: 9 EEIDIPENVTVEINGLKVKVNGPKGSIERDFSHVR---NIILRKENSK--IIVETFFADR 63
Query: 68 KTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEK 124
+ A + T SH+ N+I GV KGYRYK++ +Y+HFPI + + N+ + I+NFLGEK
Sbjct: 64 RKKALVGTIASHIENMIKGVLKGYRYKLKIIYSHFPITVEVDDRNRIVRIKNFLGEK 120
>sp|B8D5V4|RL6_DESK1 50S ribosomal protein L6P OS=Desulfurococcus kamchatkensis (strain
1221n / DSM 18924) GN=rpl6p PE=3 SV=1
Length = 184
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 75/118 (63%), Gaps = 5/118 (4%)
Query: 7 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGS 66
+E ++IP+ V V+++ + V+GP+G ++RDF H F + D R + ++ +
Sbjct: 8 AEKVEIPENVAVEVDGLRVTVKGPKGIITRDFSHARGVFIRLED-----RVVIVETFVAD 62
Query: 67 RKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEK 124
RK A + T +H+ N+ITGV +GYRYK++ +++HFPI S+ NK + IRNF+GEK
Sbjct: 63 RKQKALVGTIAAHIRNMITGVVRGYRYKLKIIFSHFPITVSVDEKNKVVRIRNFMGEK 120
>sp|A8AC04|RL6_IGNH4 50S ribosomal protein L6P OS=Ignicoccus hospitalis (strain KIN4/I /
DSM 18386 / JCM 14125) GN=rpl6p PE=3 SV=1
Length = 186
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 68/100 (68%), Gaps = 3/100 (3%)
Query: 25 IEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLI 84
++V GP+G+L RDF H + EE GK+++ ++ +F +RK A + T +H+ N+I
Sbjct: 26 VKVRGPKGELERDFSHAK-GIRIRVVEEEGKKQVLVETFFANRKRKALVNTVAAHIKNMI 84
Query: 85 TGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEK 124
TGVTKG+RYKM+ V++HFPI+ + + +EI NF+GEK
Sbjct: 85 TGVTKGWRYKMKIVFSHFPISVKVVGDR--VEIHNFIGEK 122
>sp|O26127|RL6_METTH 50S ribosomal protein L6P OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=rpl6p PE=3 SV=1
Length = 177
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 72/120 (60%), Gaps = 9/120 (7%)
Query: 5 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWF 64
L E + IPDGV V I+ V V+GP+ +LSR F H + + D K+ ++ F
Sbjct: 6 LIREEIPIPDGVDVTIDGGVT-VKGPKWELSRKFNHSEISMAVEDD------KVVLEVKF 58
Query: 65 GSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEK 124
+K A I T +H+ N+ITGVT+G+RY+M+ VYAHFP++ + + IE NFLGE+
Sbjct: 59 PKKKDKAMIGTVRAHISNMITGVTEGFRYRMKIVYAHFPMSVKVAGDKVVIE--NFLGER 116
>sp|Q975J6|RL6_SULTO 50S ribosomal protein L6P OS=Sulfolobus tokodaii (strain DSM 16993
/ JCM 10545 / NBRC 100140 / 7) GN=rpl6p PE=3 SV=1
Length = 186
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 75/126 (59%), Gaps = 7/126 (5%)
Query: 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
MK + E ++IP G+ V I I+V+GP+G++ +DF H++ + ++ K+ +
Sbjct: 1 MKAVHLYEEIEIPQGINVNIEGMKIKVKGPKGEIEKDFSHIS-GIEIRKED----NKIVV 55
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNF 120
+ F R+ A + ++H+ N+ TGVTKGYRY ++ +Y HFP+ + N ++I+N
Sbjct: 56 ETTFADRRKKAQFYSIIAHIENMFTGVTKGYRYYLKIIYTHFPVTVKVSGNE--VQIQNL 113
Query: 121 LGEKKV 126
+GEK +
Sbjct: 114 IGEKNI 119
>sp|A0B9V4|RL6_METTP 50S ribosomal protein L6P OS=Methanosaeta thermophila (strain DSM
6194 / PT) GN=rpl6p PE=3 SV=1
Length = 176
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 78/123 (63%), Gaps = 9/123 (7%)
Query: 10 MDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKT 69
+DIPDGV V+I+ + + V+GP+G+LSR+ + +++ + E++ K+ I + ++
Sbjct: 9 LDIPDGVDVQISGRSVRVKGPKGELSRELWYPDIE---IKREDS---KILIRSVARKKQH 62
Query: 70 SAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVPFF 129
A + T +H+ N+I GVT G+ Y+MR VY+HFPI + + AI NFLGE+K P F
Sbjct: 63 LAMVGTIAAHIKNMIRGVTDGFEYRMRVVYSHFPIQVKVADGKVAIS--NFLGERK-PRF 119
Query: 130 NSI 132
+I
Sbjct: 120 ATI 122
>sp|A5UL72|RL6_METS3 50S ribosomal protein L6P OS=Methanobrevibacter smithii (strain PS
/ ATCC 35061 / DSM 861) GN=rpl6p PE=3 SV=1
Length = 178
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 71/117 (60%), Gaps = 8/117 (6%)
Query: 8 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSR 67
E ++IP+GV+V IN + V+GP G+ SR F + N+D +T+ E + ++ F +
Sbjct: 9 EEIEIPEGVEVIINNNEVTVKGPNGEDSRKFTYPNVD---ITEVE---NNVVLETSFPRK 62
Query: 68 KTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEK 124
K A I T +H+ N+ITGVT G+ Y M+ V+AHFP+ + N + I NFLGE+
Sbjct: 63 KDKAMIGTTKAHISNMITGVTDGFEYHMKIVFAHFPMTVKV--NKDVVVIDNFLGER 117
>sp|Q5JJG4|RL6_PYRKO 50S ribosomal protein L6P OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=rpl6p PE=3 SV=1
Length = 184
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 71/117 (60%), Gaps = 8/117 (6%)
Query: 8 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSR 67
E ++IP+GV+V + ++V+GP+G+L R+ K+ + T K+ I F +
Sbjct: 9 EEIEIPEGVEVTVEGNTVKVKGPKGELQRELKYPGVQIF------TEDGKVVIYKEFPRK 62
Query: 68 KTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEK 124
K A +RT +H+ N+I GVT+G++Y+++ VY+HFP+ + + IE NFLGEK
Sbjct: 63 KDVAIVRTFKAHINNMIKGVTEGFKYRLKVVYSHFPMTVKVQGDEVVIE--NFLGEK 117
>sp|Q9UX91|RL6_SULSO 50S ribosomal protein L6P OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=rpl6p PE=3 SV=1
Length = 181
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 75/129 (58%), Gaps = 17/129 (13%)
Query: 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFK-----HLNLDFHLMTDEETGK 55
M+ ++ E ++IP V V + +I+++GP+G++ +DF ++LD +
Sbjct: 1 MQIVILREEIEIPKNVVVDLKGSIIKIKGPKGEVVKDFSFAKGIQISLDGN--------- 51
Query: 56 RKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAI 115
K+ ++ F +R+ A + +SH+ N+ITGVTKGYRY ++ +Y HFP + + N +
Sbjct: 52 -KIVLETTFANRRKKAVFYSIVSHIKNMITGVTKGYRYYLKIIYTHFPTSVKVVGNE--V 108
Query: 116 EIRNFLGEK 124
+I N +GEK
Sbjct: 109 QITNLIGEK 117
>sp|B6YSN0|RL6_THEON 50S ribosomal protein L6P OS=Thermococcus onnurineus (strain NA1)
GN=rpl6p PE=3 SV=1
Length = 184
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 69/117 (58%), Gaps = 8/117 (6%)
Query: 8 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSR 67
E ++IP+GV+V I V++V GP+G+L R+ K+ + T K+ I F +
Sbjct: 9 EEVEIPEGVEVTIERNVVKVRGPKGELERELKYPGVQIF------TEDGKVVIYKEFPRK 62
Query: 68 KTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEK 124
K A RT +H+ N+I GVT+G+ YK++ VY+HFP+ + + IE NFLGEK
Sbjct: 63 KDIAIARTFKAHIANMIKGVTEGFTYKLKVVYSHFPMTVKVQGDEVVIE--NFLGEK 117
>sp|Q2FSG5|RL6_METHJ 50S ribosomal protein L6P OS=Methanospirillum hungatei (strain JF-1
/ DSM 864) GN=rpl6p PE=3 SV=1
Length = 176
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 63/115 (54%), Gaps = 8/115 (6%)
Query: 10 MDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKT 69
+ IP GV V ++ V+ V+GP+G L RD + ++ + G ++ +
Sbjct: 7 VSIPSGVSVTMDGTVLHVKGPKGNLQRDMWYPGIEITI------GSEDVRFTTESQKKAV 60
Query: 70 SAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEK 124
++ + T SH N+ TGVTKGY Y M+ VY+HFPI + + +EI NFLGEK
Sbjct: 61 TSMVGTLASHCSNMCTGVTKGYLYSMKVVYSHFPIQIKV--VGETLEIVNFLGEK 113
>sp|Q9V1V1|RL6_PYRAB 50S ribosomal protein L6P OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=rpl6p PE=3 SV=1
Length = 184
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 70/117 (59%), Gaps = 8/117 (6%)
Query: 8 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSR 67
E ++IP+GV+V + ++V+GP+G++ R+ + + E GK + D F R
Sbjct: 9 EEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFV----EGGKVVIYKD--FPRR 62
Query: 68 KTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEK 124
K A +RT +H+ N+I GVT+G+ YK++ VY+HFPI + + IE NFLGEK
Sbjct: 63 KDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIE--NFLGEK 117
>sp|Q0W1X2|RL6_UNCMA 50S ribosomal protein L6P OS=Uncultured methanogenic archaeon RC-I
GN=rpl6p PE=3 SV=1
Length = 177
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 69/121 (57%), Gaps = 7/121 (5%)
Query: 10 MDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKT 69
+++P GV V ++ + +G +G++SR+F+ + T K+ ++ ++T
Sbjct: 9 IEVPQGVTVTVSGATLTTKGQKGQISREFRFPGISVR------TDGGKVIVETGKDDKQT 62
Query: 70 SAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVPFF 129
A + T SH+ N++TGV++GY Y M+ VYAHFPI + +K + I NFLGE+K
Sbjct: 63 KATVGTYASHIKNMMTGVSEGYEYHMKIVYAHFPIQVKVEGKDK-VTIGNFLGERKARTA 121
Query: 130 N 130
N
Sbjct: 122 N 122
>sp|Q9YF91|RL6_AERPE 50S ribosomal protein L6P OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rpl6p PE=3
SV=1
Length = 182
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 70/123 (56%), Gaps = 7/123 (5%)
Query: 2 KTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKID 61
K + E +++P+GV V I+ ++V GP+G++ RDF H + D + ++
Sbjct: 3 KDVHVVERVEVPEGVTVSIDGMRVKVSGPKGEVERDFSHARGVLIRLEDNS-----VVVE 57
Query: 62 AWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFL 121
++F + A + H+ N+I GV G+RYK++ +Y+HFPIN + +K I I NFL
Sbjct: 58 SFFAKARQRALVGAIAGHIRNMIKGVQGGFRYKLKIMYSHFPINVKV-EGDKFI-ISNFL 115
Query: 122 GEK 124
GEK
Sbjct: 116 GEK 118
>sp|Q8U015|RL6_PYRFU 50S ribosomal protein L6P OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=rpl6p PE=1 SV=1
Length = 184
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 69/117 (58%), Gaps = 8/117 (6%)
Query: 8 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSR 67
E ++IP+GV+V + ++V+GP+G+L R+F + E G + D F R
Sbjct: 9 EEVEIPEGVEVTVEGYKVKVKGPKGELEREFFWPGIQIFT----EDGNVVIYKD--FPRR 62
Query: 68 KTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEK 124
K A RT +H+ N+I GVT+G+ YK++ VY+HFPI+ + + IE NFLGEK
Sbjct: 63 KDVAIARTFAAHIRNMIKGVTEGFTYKLKVVYSHFPISVKVQGDEVIIE--NFLGEK 117
>sp|Q8PV34|RL6_METMA 50S ribosomal protein L6P OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=rpl6p PE=3 SV=1
Length = 176
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 66/119 (55%), Gaps = 8/119 (6%)
Query: 7 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGS 66
+ T++IP+GV V ++ V +GP+G + R F + + + E + +DA
Sbjct: 6 ARTIEIPEGVSVSLSQDVFTAKGPKGTVERTFWYPGIKIEVREGE------VVVDAESSR 59
Query: 67 RKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKK 125
++ A + T SH+ NLI GV++G+ KM VYAHFP+ + K + I NFLGEKK
Sbjct: 60 KEQKAMVGTFASHLKNLIIGVSEGFECKMNIVYAHFPMQVKV--EGKTLVIGNFLGEKK 116
>sp|Q18GG5|RL6_HALWD 50S ribosomal protein L6P OS=Haloquadratum walsbyi (strain DSM
16790) GN=rpl6p PE=3 SV=1
Length = 182
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 65/115 (56%), Gaps = 4/115 (3%)
Query: 10 MDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKT 69
++IP+ V +++ + VEGP G ++R + ++ + DE+ + I+ KT
Sbjct: 6 IEIPENVSAEVSNLALTVEGPNGSVTRTLWYPSVTVSV--DEDADADAVVIETDETDAKT 63
Query: 70 SAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEK 124
SA + T SHV N+I GVT G+ Y+M YAHFP+ S+ + IE NFLGEK
Sbjct: 64 SATVGTFESHVSNMIHGVTDGWSYEMEVYYAHFPMQVSVEGDEVIIE--NFLGEK 116
>sp|Q2NFX3|RL6_METST 50S ribosomal protein L6P OS=Methanosphaera stadtmanae (strain DSM
3091) GN=rpl6p PE=3 SV=1
Length = 184
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 66/118 (55%), Gaps = 8/118 (6%)
Query: 7 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGS 66
+E + IP+ V V IN + V+G G++ R+F H + + DEE + + F +
Sbjct: 8 TEIIPIPEDVTVTINGSEVTVKGNGGEIKRNFNHNKIT--ISNDEEN----VTVKVAFPN 61
Query: 67 RKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEK 124
+K A + T SH+ N+I GV G+ YKM+ VYAHFP+ + K + I NFLGE+
Sbjct: 62 KKDKAMVGTIRSHISNMIYGVDHGFTYKMKIVYAHFPMTVKV--QGKIVTIDNFLGER 117
>sp|Q8TRT1|RL6_METAC 50S ribosomal protein L6P OS=Methanosarcina acetivorans (strain
ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rpl6p PE=3
SV=1
Length = 176
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 70/126 (55%), Gaps = 9/126 (7%)
Query: 7 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGS 66
+ T++IP+GV V + V GP+G + R + + M D + G+ + +DA +
Sbjct: 6 ARTIEIPEGVSVSLAQDVFTATGPKGTVERKLWYPGI----MIDVKDGE--VVVDAEYAR 59
Query: 67 RKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKV 126
++ A + T SH+ NL+ GV +G+ KM VYAHFP+ + + K + I NFLGEKK
Sbjct: 60 KEQKAMVGTFASHIRNLVKGVNEGFECKMSIVYAHFPMQVKV--DGKTLIIGNFLGEKK- 116
Query: 127 PFFNSI 132
P F I
Sbjct: 117 PRFAKI 122
>sp|O59433|RL6_PYRHO 50S ribosomal protein L6P OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rpl6p PE=3 SV=2
Length = 184
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 69/117 (58%), Gaps = 8/117 (6%)
Query: 8 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSR 67
E ++IP+GV+V + ++V+GP+G++ + + + E GK + D F R
Sbjct: 9 EEIEIPEGVEVSVQDYNVKVKGPKGEVEKKLFWPGVKIFV----EDGKVVIYKD--FPRR 62
Query: 68 KTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEK 124
K A +RT +H+ N+I GVT+G+ YK++ VY+HFPI + + IE NFLGEK
Sbjct: 63 KDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIE--NFLGEK 117
>sp|O05637|RL6_SULAC 50S ribosomal protein L6P OS=Sulfolobus acidocaldarius (strain ATCC
33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
GN=rpl6p PE=3 SV=1
Length = 189
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 71/126 (56%), Gaps = 7/126 (5%)
Query: 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
+K E + IPD VKV + V++V+GP+G++ +DF + + +E K+ +
Sbjct: 4 LKAAYIREEIQIPDKVKVSLENNVLKVKGPKGEVIKDFSYAK-GIRIQLNEG----KIIL 58
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNF 120
+ F R+ A + + ++H+ N+ITG GYRY ++ + HFPI+ + + +++ N
Sbjct: 59 ETTFADRRKKALLYSIIAHIKNMITGTINGYRYYLKVISTHFPISVKVSGDE--VQVSNL 116
Query: 121 LGEKKV 126
+GEK +
Sbjct: 117 IGEKNI 122
>sp|A6VH01|RL6_METM7 50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C7 /
ATCC BAA-1331) GN=rpl6p PE=3 SV=1
Length = 182
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 64/120 (53%), Gaps = 8/120 (6%)
Query: 5 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWF 64
L E ++IP+ V V++N + V+ +L RD + ++ T K+ I+ F
Sbjct: 6 LIREEIEIPENVNVEVNGSTVAVKSGAKELKRDLLYPGIEIS------TEDGKVVIECTF 59
Query: 65 GSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEK 124
+ +A + T SH+ N+ITGVT G+ YK+ YAHFP+ S N + I NFLGEK
Sbjct: 60 PRKAQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKGNT--VTIDNFLGEK 117
>sp|A4FWA5|RL6_METM5 50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C5 /
ATCC BAA-1333) GN=rpl6p PE=3 SV=1
Length = 182
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 64/120 (53%), Gaps = 8/120 (6%)
Query: 5 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWF 64
L E ++IP+ V V+IN + V+ +L RD + ++ T K+ I+ F
Sbjct: 6 LIREEIEIPENVNVEINGNTVAVKSGAKELRRDLMYPGIEIS------TEDGKVVIECTF 59
Query: 65 GSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEK 124
+ +A + T SH+ N+ITGVT G+ YK+ YAHFP+ S N + I NFLGEK
Sbjct: 60 PRKVQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKGNT--VTIDNFLGEK 117
>sp|Q74MR6|RL6_NANEQ 50S ribosomal protein L6P OS=Nanoarchaeum equitans (strain Kin4-M)
GN=rpl6p PE=3 SV=1
Length = 192
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 71/139 (51%), Gaps = 13/139 (9%)
Query: 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKI 60
M+ + + IP+ VKV +++V GP+G++ R F +H + K+ +
Sbjct: 1 MRIPIIKYEIPIPENVKVSYENNILKVSGPKGEVERKF------YHPLIKLSVNDNKIIL 54
Query: 61 DAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNF 120
+ +F +R+ I T SH+ N++ GV + Y+++ Y HFP+ + N +E NF
Sbjct: 55 ETYFATRREKRLINTWRSHIKNMLEGVQNPFVYRLKVCYTHFPMRVKLEGNKLIVE--NF 112
Query: 121 LGE-----KKVPFFNSISL 134
LGE K++P+ + + +
Sbjct: 113 LGEKAPIIKELPYLDKVKV 131
>sp|C5A269|RL6_THEGJ 50S ribosomal protein L6P OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=rpl6p PE=3 SV=1
Length = 184
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 70/117 (59%), Gaps = 8/117 (6%)
Query: 8 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSR 67
E ++IP+GV+V + V++V+GP+G+L R+ K+ + T K+ + F +
Sbjct: 9 EEVEIPEGVEVTVENNVVKVKGPKGELERELKYPGVKIF------TEDGKVVVYKEFPRK 62
Query: 68 KTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEK 124
K A RT +H+ N+I GVT+G+ YK++ VY+HFP+ + + IE NFLGEK
Sbjct: 63 KDIAIARTFKAHINNMIKGVTEGFTYKLKVVYSHFPVTVKVQGDEVIIE--NFLGEK 117
>sp|P54042|RL6_METJA 50S ribosomal protein L6P OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=rpl6p PE=3 SV=1
Length = 182
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 64/118 (54%), Gaps = 8/118 (6%)
Query: 7 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGS 66
E + IP+ V+V+IN + V+ +L R F+H + DE + I +
Sbjct: 8 EERVKIPENVQVEINNNEVVVKSGGKELRRRFEHPKIVIKKEGDE------IVIFCEYPR 61
Query: 67 RKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEK 124
RK A + T +H+ N+I GVT+G+ YK++ YAHFP+ S+ N IE NFLGEK
Sbjct: 62 RKDKAMVGTIRAHINNMIKGVTEGFTYKLKIRYAHFPMKVSVKGNEVIIE--NFLGEK 117
>sp|Q6LXD7|RL6_METMP 50S ribosomal protein L6P OS=Methanococcus maripaludis (strain S2 /
LL) GN=rpl6p PE=3 SV=1
Length = 182
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 64/120 (53%), Gaps = 8/120 (6%)
Query: 5 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWF 64
L E ++IP+ V V+IN + V+ +L R+ + ++ T K+ I+ F
Sbjct: 6 LIREEIEIPENVNVEINGSTVVVKSGAKELKRELMYPGIEIS------TEDGKVVIECAF 59
Query: 65 GSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEK 124
+ +A + T SH+ N+ITGVT G+ YK+ YAHFP+ S N + I NFLGEK
Sbjct: 60 PRKAQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKGNT--VMIDNFLGEK 117
>sp|A9A9P8|RL6_METM6 50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C6 /
ATCC BAA-1332) GN=rpl6p PE=3 SV=1
Length = 182
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 62/120 (51%), Gaps = 8/120 (6%)
Query: 5 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWF 64
L E ++IP V V+IN + V+ +L RD + ++ T K+ I+ F
Sbjct: 6 LIREEIEIPANVNVEINGNTVAVKSGAKELKRDLLYPGIEIS------TEDGKVVIECTF 59
Query: 65 GSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEK 124
+ +A + T SH+ N+I GVT G+ YK+ YAHFP+ S N + I NFLGEK
Sbjct: 60 PRKAQTAIVGTYRSHIQNMIKGVTDGFEYKLVIRYAHFPMKVSAKGNT--VMIDNFLGEK 117
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,005,909
Number of Sequences: 539616
Number of extensions: 1752513
Number of successful extensions: 5546
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 287
Number of HSP's that attempted gapping in prelim test: 4721
Number of HSP's gapped (non-prelim): 710
length of query: 137
length of database: 191,569,459
effective HSP length: 102
effective length of query: 35
effective length of database: 136,528,627
effective search space: 4778501945
effective search space used: 4778501945
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)