Query 032626
Match_columns 137
No_of_seqs 116 out of 1042
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 03:51:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032626.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032626hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00027 60S ribosomal protein 100.0 9.8E-41 2.1E-45 257.8 16.2 129 1-133 1-129 (190)
2 PTZ00179 60S ribosomal protein 100.0 2.2E-40 4.8E-45 255.7 15.3 124 4-133 3-126 (189)
3 PRK05518 rpl6p 50S ribosomal p 100.0 1.7E-38 3.6E-43 243.6 15.8 125 1-133 1-125 (180)
4 COG0097 RplF Ribosomal protein 100.0 4.2E-38 9E-43 240.2 13.6 119 2-133 1-119 (178)
5 TIGR03653 arch_L6P archaeal ri 100.0 3.6E-37 7.8E-42 234.4 16.0 119 7-133 1-119 (170)
6 CHL00140 rpl6 ribosomal protei 100.0 8E-36 1.7E-40 228.4 14.9 119 2-133 1-119 (178)
7 PRK05498 rplF 50S ribosomal pr 100.0 3.1E-35 6.8E-40 225.0 15.1 119 2-133 1-119 (178)
8 TIGR03654 L6_bact ribosomal pr 100.0 4.8E-35 1E-39 223.5 15.2 118 3-133 1-118 (175)
9 KOG3255 60S ribosomal protein 99.9 1.1E-25 2.4E-30 172.1 0.2 129 1-132 1-129 (179)
10 KOG3254 Mitochondrial/chloropl 99.9 4.4E-23 9.5E-28 157.5 6.6 108 3-118 32-139 (211)
11 PF00347 Ribosomal_L6: Ribosom 99.8 3.2E-21 6.8E-26 127.9 7.1 74 12-90 1-77 (77)
12 cd06479 ACD_HspB7_like Alpha c 79.0 7.3 0.00016 26.0 5.3 27 13-39 21-55 (81)
13 COG0097 RplF Ribosomal protein 70.5 5.4 0.00012 30.8 3.2 30 9-38 114-144 (178)
14 TIGR03653 arch_L6P archaeal ri 70.1 5.6 0.00012 30.3 3.3 24 9-32 114-137 (170)
15 PF12970 DUF3858: Domain of Un 66.6 26 0.00056 25.3 5.8 33 8-40 41-73 (116)
16 PRK05518 rpl6p 50S ribosomal p 64.4 9.4 0.0002 29.4 3.5 26 9-34 120-145 (180)
17 cd06478 ACD_HspB4-5-6 Alpha-cr 63.1 11 0.00023 25.0 3.2 25 7-31 53-83 (83)
18 PF00011 HSP20: Hsp20/alpha cr 62.8 29 0.00062 23.1 5.4 20 13-32 20-39 (102)
19 CHL00140 rpl6 ribosomal protei 61.4 11 0.00024 28.8 3.4 26 9-34 114-140 (178)
20 cd06477 ACD_HspB3_Like Alpha c 60.3 5.8 0.00013 26.6 1.5 20 13-32 20-39 (83)
21 cd06478 ACD_HspB4-5-6 Alpha-cr 59.4 7.4 0.00016 25.8 1.9 19 13-31 20-38 (83)
22 cd06498 ACD_alphaB-crystallin_ 58.4 6.5 0.00014 26.2 1.5 18 13-30 20-37 (84)
23 cd06476 ACD_HspB2_like Alpha c 58.4 6.6 0.00014 26.2 1.5 19 13-31 20-38 (83)
24 cd06469 p23_DYX1C1_like p23_li 56.7 47 0.001 20.8 6.5 28 13-40 19-46 (78)
25 cd00298 ACD_sHsps_p23-like Thi 56.5 11 0.00023 22.8 2.2 20 13-32 19-38 (80)
26 TIGR03654 L6_bact ribosomal pr 55.9 16 0.00034 27.9 3.4 26 9-34 113-139 (175)
27 cd06497 ACD_alphaA-crystallin_ 55.8 7.7 0.00017 25.9 1.5 19 13-31 23-41 (86)
28 cd06480 ACD_HspB8_like Alpha-c 55.1 8 0.00017 26.5 1.5 20 13-32 28-47 (91)
29 PTZ00027 60S ribosomal protein 54.9 16 0.00035 28.3 3.4 24 10-33 125-151 (190)
30 PRK14940 DNA polymerase III su 54.7 74 0.0016 26.5 7.6 47 7-61 24-70 (367)
31 PRK05498 rplF 50S ribosomal pr 54.6 17 0.00036 27.7 3.4 26 9-34 114-140 (178)
32 cd06481 ACD_HspB9_like Alpha c 54.3 9.2 0.0002 25.6 1.7 19 13-31 20-38 (87)
33 cd06482 ACD_HspB10 Alpha cryst 53.9 8.6 0.00019 26.0 1.5 19 13-31 21-39 (87)
34 cd06526 metazoan_ACD Alpha-cry 51.4 10 0.00022 24.8 1.5 20 13-32 20-39 (83)
35 COG0071 IbpA Molecular chapero 51.3 36 0.00079 24.6 4.6 20 13-32 63-82 (146)
36 cd06475 ACD_HspB1_like Alpha c 49.5 12 0.00026 25.0 1.7 19 13-31 23-41 (86)
37 PF14324 PINIT: PINIT domain; 48.3 9.4 0.0002 28.0 1.1 31 5-35 72-104 (144)
38 PTZ00179 60S ribosomal protein 47.2 27 0.00059 27.0 3.5 12 10-21 122-133 (189)
39 cd06470 ACD_IbpA-B_like Alpha- 45.1 14 0.00031 24.6 1.5 19 13-31 24-42 (90)
40 PRK14945 DNA polymerase III su 41.8 1.1E+02 0.0023 25.4 6.5 47 7-61 24-70 (362)
41 PRK11597 heat shock chaperone 40.1 18 0.00039 26.7 1.5 19 13-31 56-74 (142)
42 PRK10743 heat shock protein Ib 40.0 18 0.00039 26.4 1.5 18 13-30 58-75 (137)
43 cd06471 ACD_LpsHSP_like Group 38.5 21 0.00045 23.6 1.5 18 14-31 24-41 (93)
44 PF10162 G8: G8 domain; Inter 36.6 1.3E+02 0.0027 21.3 5.4 36 7-46 12-52 (125)
45 cd06464 ACD_sHsps-like Alpha-c 35.7 25 0.00054 22.2 1.5 20 13-32 20-39 (88)
46 PF04521 Viral_P18: ssRNA posi 34.1 16 0.00035 26.5 0.4 27 101-127 36-62 (120)
47 PF00712 DNA_pol3_beta: DNA po 32.9 1.4E+02 0.0031 20.5 5.2 48 7-61 24-71 (120)
48 KOG3591 Alpha crystallins [Pos 31.6 43 0.00093 25.5 2.4 47 12-63 84-147 (173)
49 PRK14947 DNA polymerase III su 31.3 3E+02 0.0064 23.3 7.7 47 7-61 24-70 (384)
50 PRK14944 DNA polymerase III su 29.5 2.7E+02 0.0059 23.4 7.1 49 7-61 24-73 (375)
51 PF12119 DUF3581: Protein of u 29.5 80 0.0017 25.2 3.6 26 14-39 166-191 (218)
52 cd06463 p23_like Proteins cont 29.1 1.1E+02 0.0024 18.7 3.7 28 13-40 19-51 (84)
53 PF04213 HtaA: Htaa; InterPro 28.0 2.6E+02 0.0056 20.9 6.9 36 22-63 65-100 (168)
54 PF02495 7kD_coat: 7kD viral c 27.2 85 0.0018 19.4 2.8 18 12-29 23-40 (59)
55 COG4758 Predicted membrane pro 26.5 54 0.0012 26.5 2.2 23 2-24 164-186 (235)
56 PF10133 RNA_bind_2: Predicted 26.1 89 0.0019 19.8 2.8 22 112-133 28-49 (61)
57 PF07481 DUF1521: Domain of Un 25.8 1.4E+02 0.0029 23.0 4.1 32 5-36 7-41 (171)
58 cd06472 ACD_ScHsp26_like Alpha 25.7 1.4E+02 0.0029 19.6 3.9 21 8-28 64-89 (92)
59 PRK14942 DNA polymerase III su 25.1 2.1E+02 0.0046 24.0 5.7 47 7-61 24-70 (373)
60 PF10882 bPH_5: Bacterial PH d 23.1 1.3E+02 0.0029 19.8 3.4 23 17-39 2-24 (100)
61 PF05137 PilN: Fimbrial assemb 22.6 1.1E+02 0.0025 18.9 2.9 9 11-19 9-17 (78)
62 PF00970 FAD_binding_6: Oxidor 21.6 55 0.0012 21.4 1.2 14 22-35 85-98 (99)
63 PF09922 DUF2154: Cell wall-ac 21.4 1E+02 0.0022 21.4 2.6 20 3-22 47-66 (115)
64 PF13342 Toprim_Crpt: C-termin 21.3 1.4E+02 0.003 18.9 3.0 37 74-113 19-55 (62)
65 PF05239 PRC: PRC-barrel domai 20.5 98 0.0021 19.3 2.3 6 56-61 68-73 (79)
No 1
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=100.00 E-value=9.8e-41 Score=257.84 Aligned_cols=129 Identities=50% Similarity=0.892 Sum_probs=120.0
Q ss_pred CceeccceeeEcCCCcEEEEeCcEEEEEcCCcEEEEEeeCCcEEEEEeecccCCccEEEEEecCCChhhhhhhHhHHHHH
Q 032626 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHV 80 (137)
Q Consensus 1 mk~~lg~~pI~IP~gV~Vti~~~~v~VkGp~G~l~~~l~~~~v~i~~~~~~~~~~~~l~i~~~~~~k~~~a~~GT~rsli 80 (137)
||.++...||+||+||+|+++++.|+|+||+|+|+++|+++++.+.+..++ +++.++.|.++++.+|+|||+||||
T Consensus 1 ~~~~~~~~~I~IP~~V~V~i~~~~v~VkGp~G~L~~~~~~~~~~i~i~~~~----~~i~v~~~~~~~k~~a~~Gt~rslI 76 (190)
T PTZ00027 1 MKTIFSSEKIRIPEGVTVTVKSRKVTVTGKYGELTRSFRHLPVDIKLSKDG----KYIKVEMWFGTPSHLACIRTVCSHI 76 (190)
T ss_pred CcccccCCCEecCCCCEEEEECCEEEEECCCceEEEEecCCCceEEEEeCC----CEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 788899999999999999999999999999999999999765666653455 7899999999999999999999999
Q ss_pred hhceeeeccceEEEEEEEeeeeeeeEEECCCCceEEEeecCCCceeeEEeccc
Q 032626 81 GNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVPFFNSIS 133 (137)
Q Consensus 81 ~NmI~GVt~Gf~~~L~lvg~gf~~~~~v~~~g~~v~i~nflgek~~r~~~~~~ 133 (137)
+|||+||++||+|+|+++|+|||++++++++|++|+++||||+++|+.+++|.
T Consensus 77 ~NmI~GVt~Gf~~~LeivGvGyra~~~v~~~g~~L~l~N~LG~Sh~i~~~iP~ 129 (190)
T PTZ00027 77 KNMMTGVTKKFQYKMRLVYAHFPINSNITDNGKTIEIRNFLGEKRVRTVKMLP 129 (190)
T ss_pred HHHhhhhcCCEEEEEEEEEeeeeEEEEEcCCCCEEEEEccCCCceeEEEECCC
Confidence 99999999999999999999999998888889999999999999999999984
No 2
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=100.00 E-value=2.2e-40 Score=255.69 Aligned_cols=124 Identities=48% Similarity=0.871 Sum_probs=113.6
Q ss_pred eccceeeEcCCCcEEEEeCcEEEEEcCCcEEEEEeeCCcEEEEEeecccCCccEEEEEecCCChhhhhhhHhHHHHHhhc
Q 032626 4 ILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNL 83 (137)
Q Consensus 4 ~lg~~pI~IP~gV~Vti~~~~v~VkGp~G~l~~~l~~~~v~i~~~~~~~~~~~~l~i~~~~~~k~~~a~~GT~rsli~Nm 83 (137)
++...||+||+||+|+++++.|+|+||+|+|+++|++.++.+.++.++ +++.+++|+++++++|+|||+||||+||
T Consensus 3 ~~~~~pI~IP~~V~V~i~~~~ItVkGpkG~Ls~~~~~~~~~i~i~~~~----~~I~v~~~~~~kk~~al~Gt~rslI~NM 78 (189)
T PTZ00179 3 IKSQDTITIPEDVTVSVKDRIVTVKGKRGTLTKDLRHLQLDFRVNKKN----RTFTAVRWFGSKIPNSTINTALSHVRNM 78 (189)
T ss_pred ccccccEeCCCCCEEEEeCCEEEEECCCcEEEEEcCCCCcEEEEEecC----CEEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999765555554454 7899999999999999999999999999
Q ss_pred eeeeccceEEEEEEEeeeeeeeEEECCCCceEEEeecCCCceeeEEeccc
Q 032626 84 ITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVPFFNSIS 133 (137)
Q Consensus 84 I~GVt~Gf~~~L~lvg~gf~~~~~v~~~g~~v~i~nflgek~~r~~~~~~ 133 (137)
|+||++||+|+|+++|+||||++.++ |+.|+++||||+++|+.+++|.
T Consensus 79 I~GVt~GF~k~L~ivgvgyp~ra~v~--g~~l~l~N~LG~sh~~~~~ip~ 126 (189)
T PTZ00179 79 ITGVTKGFRFKVRFAYAHFPISVSVE--NQLVEIRNFLGEKRVRRQVVAD 126 (189)
T ss_pred hhhhcCCEEEEEEEEEeCcceEEEEc--CCEEEEEecCCCCccEEEECCC
Confidence 99999999999999999999999986 6789999999999999999984
No 3
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=100.00 E-value=1.7e-38 Score=243.59 Aligned_cols=125 Identities=37% Similarity=0.685 Sum_probs=115.8
Q ss_pred CceeccceeeEcCCCcEEEEeCcEEEEEcCCcEEEEEeeCCcEEEEEeecccCCccEEEEEecCCChhhhhhhHhHHHHH
Q 032626 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHV 80 (137)
Q Consensus 1 mk~~lg~~pI~IP~gV~Vti~~~~v~VkGp~G~l~~~l~~~~v~i~~~~~~~~~~~~l~i~~~~~~k~~~a~~GT~rsli 80 (137)
|-.++.++||.||+||+|+++++.++|+||+|+|+++|+++.+++++ ++ +++.+++|+++++++|+|||+||||
T Consensus 1 ~~~~~~~~pI~IP~~V~v~i~~~~v~VkGp~G~L~~~~~~~~v~i~~--~~----~~i~v~~~~~~kk~ra~~gt~rslI 74 (180)
T PRK05518 1 MVAAYIREEIEIPEGVTVEIEGLVVTVKGPKGELTRDFWYPGVTISV--ED----GKVVIETEFARKKTKAMVGTFASHI 74 (180)
T ss_pred CccccccccEEcCCCCEEEEECCEEEEECCCeEEEEEecCCcEEEEE--EC----CEEEEEECCCCHHHHHHHHHHHHHH
Confidence 45578899999999999999999999999999999999866888886 54 7899999999999999999999999
Q ss_pred hhceeeeccceEEEEEEEeeeeeeeEEECCCCceEEEeecCCCceeeEEeccc
Q 032626 81 GNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVPFFNSIS 133 (137)
Q Consensus 81 ~NmI~GVt~Gf~~~L~lvg~gf~~~~~v~~~g~~v~i~nflgek~~r~~~~~~ 133 (137)
+|||+||++||+++|+++|+||||++.++ |+.++++||||+++|+.+.+|.
T Consensus 75 ~NmI~GVt~Gf~~~LelvGvGypira~~~--g~~l~l~n~LG~Sh~v~~~iP~ 125 (180)
T PRK05518 75 KNMIKGVTEGFEYKLKIVYSHFPMQVKVQ--GNEVVIENFLGEKSPRRAKILG 125 (180)
T ss_pred HhhheecccceEEEEEEEecCccEEEEEc--CCEEEEEeccccceeEEEeCCC
Confidence 99999999999999999999999999886 5679999999999999999985
No 4
>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.2e-38 Score=240.19 Aligned_cols=119 Identities=24% Similarity=0.466 Sum_probs=105.0
Q ss_pred ceeccceeeEcCCCcEEEEeCcEEEEEcCCcEEEEEeeCCcEEEEEeecccCCccEEEEEecCCChhhhhhhHhHHHHHh
Q 032626 2 KTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVG 81 (137)
Q Consensus 2 k~~lg~~pI~IP~gV~Vti~~~~v~VkGp~G~l~~~l~~~~v~i~~~~~~~~~~~~l~i~~~~~~k~~~a~~GT~rsli~ 81 (137)
+++++++||.+|+||+|+++++.++++||+|+|+++|++..|.++ .++ +.+.+.+++. ++.+|+|||+||||+
T Consensus 1 Msri~k~~i~~P~gV~V~i~~~~v~vkGpkGeL~~~~~~~~v~v~--~~~----~~~vv~~~~~-k~~~a~~Gt~rali~ 73 (178)
T COG0097 1 MSRIGKRPIVIPAGVTVSIEGQVVTVKGPKGELTREFHDNVVKVE--VED----NILVVRPVDG-KRKRALHGTVRALIN 73 (178)
T ss_pred CCceeeccEecCCCeEEEEeccEEEEECCCcEEEEEecCcceEEE--ecC----CEEEEeeccc-chhHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999996444555 454 6677777666 667799999999999
Q ss_pred hceeeeccceEEEEEEEeeeeeeeEEECCCCceEEEeecCCCceeeEEeccc
Q 032626 82 NLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVPFFNSIS 133 (137)
Q Consensus 82 NmI~GVt~Gf~~~L~lvg~gf~~~~~v~~~g~~v~i~nflgek~~r~~~~~~ 133 (137)
|||+|||+||+|+|+++|+||||++ +. ++ ++||||+++|+.++++.
T Consensus 74 Nmv~GVteGf~~kL~ivgvgyra~v-~g--~~---l~l~LG~shp~~~~ip~ 119 (178)
T COG0097 74 NMVKGVTEGFEKKLEIVGVGYRAQV-VG--GN---LELFLGYSHPVVIEIPE 119 (178)
T ss_pred HHheecccceEEEEEEEEecceeEE-ec--cE---EEEeecccCCeEEECCC
Confidence 9999999999999999999999999 43 22 99999999999999875
No 5
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=100.00 E-value=3.6e-37 Score=234.41 Aligned_cols=119 Identities=34% Similarity=0.679 Sum_probs=110.1
Q ss_pred ceeeEcCCCcEEEEeCcEEEEEcCCcEEEEEeeCCcEEEEEeecccCCccEEEEEecCCChhhhhhhHhHHHHHhhceee
Q 032626 7 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITG 86 (137)
Q Consensus 7 ~~pI~IP~gV~Vti~~~~v~VkGp~G~l~~~l~~~~v~i~~~~~~~~~~~~l~i~~~~~~k~~~a~~GT~rsli~NmI~G 86 (137)
.+||.||+||+|+++++.++|+||+|+|+++|+|+.+++++ ++ +++.++.|+++++++|+|||+||||+|||+|
T Consensus 1 ~~pI~IP~~V~v~i~~~~i~vkGp~G~L~~~~~~~~v~i~~--~~----~~i~v~~~~~~k~~~a~~gt~rsli~NmI~G 74 (170)
T TIGR03653 1 REEIEIPEGVSVTIEGNIVTVKGPKGEVTRELWYPGIEISV--ED----GKVVIETDFARKKDKAMVGTYRSHIKNMIKG 74 (170)
T ss_pred CceEecCCCCEEEEeCCEEEEECCCeEEEEEEeCCcEEEEE--eC----CEEEEEeCCCCHHHHHHHHHHHHHHHhheee
Confidence 36999999999999999999999999999999447888875 54 7899999999999999999999999999999
Q ss_pred eccceEEEEEEEeeeeeeeEEECCCCceEEEeecCCCceeeEEeccc
Q 032626 87 VTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVPFFNSIS 133 (137)
Q Consensus 87 Vt~Gf~~~L~lvg~gf~~~~~v~~~g~~v~i~nflgek~~r~~~~~~ 133 (137)
||+||+++|+++|+|||+++.++ |+.++++||||.++|+.+++|.
T Consensus 75 Vt~Gf~~~LeivGvGy~~ra~~~--g~~L~l~n~LG~Sh~i~~~iP~ 119 (170)
T TIGR03653 75 VTEGFEYKMKVVYSHFPMQVKVE--GNKVVIENFLGEKAPRRAKIPG 119 (170)
T ss_pred cccCeEEEEEEEeccccEEEEEc--CCeEEEeeccccceeEEEECCC
Confidence 99999999999999999988886 5679999999999999999984
No 6
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=100.00 E-value=8e-36 Score=228.38 Aligned_cols=119 Identities=22% Similarity=0.360 Sum_probs=109.5
Q ss_pred ceeccceeeEcCCCcEEEEeCcEEEEEcCCcEEEEEeeCCcEEEEEeecccCCccEEEEEecCCChhhhhhhHhHHHHHh
Q 032626 2 KTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVG 81 (137)
Q Consensus 2 k~~lg~~pI~IP~gV~Vti~~~~v~VkGp~G~l~~~l~~~~v~i~~~~~~~~~~~~l~i~~~~~~k~~~a~~GT~rsli~ 81 (137)
++++|++||+||+||+|+++++.|+|+||+|+|+++|++ ++++.+ ++ +++.++.|+++++++|+|||+||||+
T Consensus 1 msrig~~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~-~v~i~~--~~----~~i~v~~~~~~k~~~a~~gt~~slI~ 73 (178)
T CHL00140 1 MSRIGKLPIKIPDNVNVSIDDQIIKVKGPKGTLSRKIPD-LITIEI--QD----NSLFVSKKDESKKARALHGLYRTLIN 73 (178)
T ss_pred CCcccceeeecCCCCEEEEECCEEEEECCCEEEEEECCC-CeEEEE--eC----CEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999995 788875 54 68999999999999999999999999
Q ss_pred hceeeeccceEEEEEEEeeeeeeeEEECCCCceEEEeecCCCceeeEEeccc
Q 032626 82 NLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVPFFNSIS 133 (137)
Q Consensus 82 NmI~GVt~Gf~~~L~lvg~gf~~~~~v~~~g~~v~i~nflgek~~r~~~~~~ 133 (137)
|||+||++||+++|+++|+||++++ + |+.|.+ |||+++++.+.+|.
T Consensus 74 Nmi~GVt~Gf~~~L~lvGvGyr~~~--~--g~~l~l--~LG~sh~i~~~IP~ 119 (178)
T CHL00140 74 NMVIGVSEGFEKKLELQGVGYRAQV--Q--GKDLIL--NLGYSHPVKIKIPP 119 (178)
T ss_pred HHHhhcccCceEEEEEEEEEEEEEE--e--CCcEEE--EecCCeeEEEECCC
Confidence 9999999999999999999999765 4 455888 99999999999984
No 7
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=100.00 E-value=3.1e-35 Score=225.02 Aligned_cols=119 Identities=24% Similarity=0.444 Sum_probs=109.4
Q ss_pred ceeccceeeEcCCCcEEEEeCcEEEEEcCCcEEEEEeeCCcEEEEEeecccCCccEEEEEecCCChhhhhhhHhHHHHHh
Q 032626 2 KTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVG 81 (137)
Q Consensus 2 k~~lg~~pI~IP~gV~Vti~~~~v~VkGp~G~l~~~l~~~~v~i~~~~~~~~~~~~l~i~~~~~~k~~~a~~GT~rsli~ 81 (137)
++++|+.||.||++|+|+++++.|+|+||+|+|+++|+ ..+++++ ++ +++.++.|.++++++|+|||+||||+
T Consensus 1 ms~ig~~~I~IP~~V~v~~~~~~v~vkGp~G~l~~~~~-~~v~i~~--~~----~~i~v~~~~~~k~~~a~~gt~~s~I~ 73 (178)
T PRK05498 1 MSRIGKKPIAIPAGVEVTINGNVVTVKGPKGELSRTLN-PDVTVKV--ED----NEITVTRPDDSKKARALHGTTRALIN 73 (178)
T ss_pred CCcccccceecCCCCEEEEECCEEEEECCCEEEEEEcC-CCeEEEE--EC----CEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999996 7888875 44 68999999999999999999999999
Q ss_pred hceeeeccceEEEEEEEeeeeeeeEEECCCCceEEEeecCCCceeeEEeccc
Q 032626 82 NLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVPFFNSIS 133 (137)
Q Consensus 82 NmI~GVt~Gf~~~L~lvg~gf~~~~~v~~~g~~v~i~nflgek~~r~~~~~~ 133 (137)
|||+||++||+++|+++|+||++++ + |+.|++ |||+++++.+.+|.
T Consensus 74 Nmi~GVt~Gf~~~L~lvGvgyrv~~--~--g~~l~l--~LG~sh~i~~~Ip~ 119 (178)
T PRK05498 74 NMVVGVTEGFEKKLEIVGVGYRAQV--K--GKKLNL--SLGYSHPVEYEIPE 119 (178)
T ss_pred HHhhhcCCCeEEEEEEEeEEEEEEE--e--CCeEEE--EecCCEEEEEECCC
Confidence 9999999999999999999998654 4 556888 99999999999985
No 8
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=100.00 E-value=4.8e-35 Score=223.53 Aligned_cols=118 Identities=23% Similarity=0.434 Sum_probs=108.5
Q ss_pred eeccceeeEcCCCcEEEEeCcEEEEEcCCcEEEEEeeCCcEEEEEeecccCCccEEEEEecCCChhhhhhhHhHHHHHhh
Q 032626 3 TILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGN 82 (137)
Q Consensus 3 ~~lg~~pI~IP~gV~Vti~~~~v~VkGp~G~l~~~l~~~~v~i~~~~~~~~~~~~l~i~~~~~~k~~~a~~GT~rsli~N 82 (137)
+++|++||.||++|+|+++++.|+|+||+|+|+++|+ +.+++++ ++ +.+.++.|+++++++|+|||+||||+|
T Consensus 1 s~ig~~~I~IP~~V~v~~~~~~v~v~Gp~G~l~~~l~-~~i~i~~--~~----~~i~v~~~~~~kk~~a~~gt~~s~i~N 73 (175)
T TIGR03654 1 SRIGKKPIAIPAGVEVTIDGNVVTVKGPKGELSRTLH-PGVTVKV--ED----GQLTVSRPNDSKEARALHGTTRALINN 73 (175)
T ss_pred CcccccceecCCCcEEEEeCCEEEEEcCCeEEEEEcC-CCeEEEE--EC----CEEEEEecCCCHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999996 7888875 44 789999999999999999999999999
Q ss_pred ceeeeccceEEEEEEEeeeeeeeEEECCCCceEEEeecCCCceeeEEeccc
Q 032626 83 LITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVPFFNSIS 133 (137)
Q Consensus 83 mI~GVt~Gf~~~L~lvg~gf~~~~~v~~~g~~v~i~nflgek~~r~~~~~~ 133 (137)
||+||++||+++|+++|+||++.+ + |+.|++ |||+++++.+++|.
T Consensus 74 mi~GVt~Gf~~~L~lvGvgyrv~~--~--g~~l~l--~LG~sh~i~~~Ip~ 118 (175)
T TIGR03654 74 MVIGVSEGFEKKLEIVGVGYRAQL--Q--GKKLNL--SLGYSHPVEYEIPE 118 (175)
T ss_pred HhheeccCcEEEEEEEEEEEEEEE--e--CCeEEE--EecCceeEEEECCC
Confidence 999999999999999999998654 4 557888 99999999999985
No 9
>KOG3255 consensus 60S ribosomal protein L9 [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=1.1e-25 Score=172.11 Aligned_cols=129 Identities=53% Similarity=0.886 Sum_probs=119.8
Q ss_pred CceeccceeeEcCCCcEEEEeCcEEEEEcCCcEEEEEeeCCcEEEEEeecccCCccEEEEEecCCChhhhhhhHhHHHHH
Q 032626 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHV 80 (137)
Q Consensus 1 mk~~lg~~pI~IP~gV~Vti~~~~v~VkGp~G~l~~~l~~~~v~i~~~~~~~~~~~~l~i~~~~~~k~~~a~~GT~rsli 80 (137)
||+++.+..+.||+||++++++..++++||+|+|..+|.|.++++....++ .+.+.+..|++.++..|..-|..|++
T Consensus 1 mk~Ilsn~tv~iPe~v~it~k~~v~~v~gprgtl~~d~~hi~~~~~~~~~~---~~~ik~~~~~~~Rk~va~l~t~~s~i 77 (179)
T KOG3255|consen 1 MKTILSNQTVHIPENVDITLKGHVVIVKGPRGTLWRDFNHINVELSLLGKK---KKRLKIDKWWGTRKGVACLRTVVSHI 77 (179)
T ss_pred CceEEeceEEecCCCceEEEeeEEEEEeCCCcceeccccccchhhhhhcch---hhhhhhhhhhccchhHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999888877752221 13588889999999999999999999
Q ss_pred hhceeeeccceEEEEEEEeeeeeeeEEECCCCceEEEeecCCCceeeEEecc
Q 032626 81 GNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVPFFNSI 132 (137)
Q Consensus 81 ~NmI~GVt~Gf~~~L~lvg~gf~~~~~v~~~g~~v~i~nflgek~~r~~~~~ 132 (137)
+||+.||+.||.|++..+|.|||++...++|++..+|.||||||.+|+++|.
T Consensus 78 en~i~gvt~~~i~k~~av~a~f~in~~~~~~~~s~~i~n~l~~k~~~~~~~~ 129 (179)
T KOG3255|consen 78 ENCIKGVTIGFIYKMRAVYAHFPINTVIQENGKSEEIRNFLGEKLVRRVEMR 129 (179)
T ss_pred HHHHhcchHHHHHHhhhHHhhccccceecCCCcchhhhhhhhhhccceEecC
Confidence 9999999999999999999999999999999999999999999999999986
No 10
>KOG3254 consensus Mitochondrial/chloroplast ribosomal protein L6 [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=4.4e-23 Score=157.50 Aligned_cols=108 Identities=16% Similarity=0.228 Sum_probs=88.3
Q ss_pred eeccceeeEcCCCcEEEEeCcEEEEEcCCcEEEEEeeCCcEEEEEeecccCCccEEEEEecCCChhhhhhhHhHHHHHhh
Q 032626 3 TILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGN 82 (137)
Q Consensus 3 ~~lg~~pI~IP~gV~Vti~~~~v~VkGp~G~l~~~l~~~~v~i~~~~~~~~~~~~l~i~~~~~~k~~~a~~GT~rsli~N 82 (137)
+-++++.|..|++-.-++++..++|+||+|+|++++| ..+.++-+.+. .+........+++++++||||+|||++|
T Consensus 32 v~~~~k~i~~~e~k~~~lege~l~vkGP~gel~l~~P-~~l~L~~dkk~---~g~~~~~k~~etkkqr~mwgt~R~l~~N 107 (211)
T KOG3254|consen 32 VYVGKKEIIVKENKQRDLEGEQLQVKGPHGELNLRFP-NYLNLSNDKKK---SGMDANIKKQETKKQRAMWGTFRALLAN 107 (211)
T ss_pred eeecceeEEeehhhccccccCceEeeCCcceeeccCC-ccccccchhhh---cceeeeecchhhHHHHHHHHHHHHHHhc
Confidence 4578899999999999999999999999999999999 56666421121 1333333456889999999999999999
Q ss_pred ceeeeccceEEEEEEEeeeeeeeEEECCCCceEEEe
Q 032626 83 LITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIR 118 (137)
Q Consensus 83 mI~GVt~Gf~~~L~lvg~gf~~~~~v~~~g~~v~i~ 118 (137)
||+|||+||++.|++||+|||+++. |+.+.++
T Consensus 108 ~v~GVt~g~~k~l~lVGvGYRa~le----gk~l~lk 139 (211)
T KOG3254|consen 108 NVKGVTMGFLKILKLVGVGYRASLE----GKFLHLK 139 (211)
T ss_pred cchhhhhhhhheeeEEeeeeEEEec----CceEEEE
Confidence 9999999999999999999998873 6666543
No 11
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=99.85 E-value=3.2e-21 Score=127.92 Aligned_cols=74 Identities=38% Similarity=0.673 Sum_probs=67.2
Q ss_pred cCCCcEEEEeCcEEEEEcCCcEEEEEeeCCcEEEEEeecccCCccEEEEEecCCChhhhh---hhHhHHHHHhhceeeec
Q 032626 12 IPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSA---AIRTALSHVGNLITGVT 88 (137)
Q Consensus 12 IP~gV~Vti~~~~v~VkGp~G~l~~~l~~~~v~i~~~~~~~~~~~~l~i~~~~~~k~~~a---~~GT~rsli~NmI~GVt 88 (137)
||+||+|+++++.++++||+|+|++++| +.+.++++.++ +.+.+..+.+.+++++ +|||+|||++||++||+
T Consensus 1 IP~gV~v~~~~~~i~v~G~~g~l~~~~~-~~v~v~~~~~~----~~~~~~~~~~~~k~~~~~a~~gt~rsli~n~i~GV~ 75 (77)
T PF00347_consen 1 IPEGVKVTIKGNIITVKGPKGELSRPIP-PGVKVEIKVED----NKITVSVLSGNKKQKAFAAMIGTYRSLINNMIKGVT 75 (77)
T ss_dssp SSTTCEEEEETTEEEEESSSSEEEEEET-TTEEEEEEEET----TSEEEEEEEESHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCcEEEEECCCEeEEEECC-CCeeEEEEcCC----CceEEEECcccHhHhhhHHhhccccccccCceeEEC
Confidence 7999999999999999999999999999 46888754344 6889988999999999 99999999999999999
Q ss_pred cc
Q 032626 89 KG 90 (137)
Q Consensus 89 ~G 90 (137)
+|
T Consensus 76 ~G 77 (77)
T PF00347_consen 76 EG 77 (77)
T ss_dssp TE
T ss_pred CC
Confidence 97
No 12
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=79.02 E-value=7.3 Score=25.95 Aligned_cols=27 Identities=19% Similarity=0.422 Sum_probs=21.4
Q ss_pred CCCcEEEEeCcEEEEEcCC--------cEEEEEee
Q 032626 13 PDGVKVKINAKVIEVEGPR--------GKLSRDFK 39 (137)
Q Consensus 13 P~gV~Vti~~~~v~VkGp~--------G~l~~~l~ 39 (137)
|+.++|+++++.|+|+|-+ |+.++.+.
T Consensus 21 pedi~V~v~~~~L~I~ger~~~~~~~~g~F~R~~~ 55 (81)
T cd06479 21 PEDIIVTTSNNQIEVHAEKLASDGTVMNTFTHKCQ 55 (81)
T ss_pred HHHeEEEEECCEEEEEEEEeccCCCEEEEEEEEEE
Confidence 6799999999999999965 55555554
No 13
>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
Probab=70.51 E-value=5.4 Score=30.84 Aligned_cols=30 Identities=30% Similarity=0.564 Sum_probs=23.6
Q ss_pred eeEcCCCcEEEEeC-cEEEEEcCCcEEEEEe
Q 032626 9 TMDIPDGVKVKINA-KVIEVEGPRGKLSRDF 38 (137)
Q Consensus 9 pI~IP~gV~Vti~~-~~v~VkGp~G~l~~~l 38 (137)
.++||+|+++++.+ ..|.|+|+.=++.=.+
T Consensus 114 ~~~ip~gi~v~v~~~t~I~v~GidKe~VGQ~ 144 (178)
T COG0097 114 VIEIPEGITVEVPGPTEIVVEGIDKELVGQV 144 (178)
T ss_pred EEECCCCeEEEecCCCEEEEEcCCHHHHhHH
Confidence 46889999999998 7799999886554443
No 14
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=70.07 E-value=5.6 Score=30.28 Aligned_cols=24 Identities=38% Similarity=0.572 Sum_probs=14.6
Q ss_pred eeEcCCCcEEEEeCcEEEEEcCCc
Q 032626 9 TMDIPDGVKVKINAKVIEVEGPRG 32 (137)
Q Consensus 9 pI~IP~gV~Vti~~~~v~VkGp~G 32 (137)
.+.||+||+++..++.++++|..=
T Consensus 114 ~~~iP~gI~v~~~~~~I~i~G~DK 137 (170)
T TIGR03653 114 RAKIPGGVKVKVKGEEVIVTGIDK 137 (170)
T ss_pred EEECCCCeEEEecCCEEEEEeCCH
Confidence 346677777766555566665543
No 15
>PF12970 DUF3858: Domain of Unknown Function with PDB structure (DUF3858); InterPro: IPR024544 This domain of unknown function is structurally similar to part of neuropilin-2. The proteins it occurs in have not yet been functionally characterised.; PDB: 3KD4_A.
Probab=66.65 E-value=26 Score=25.34 Aligned_cols=33 Identities=27% Similarity=0.507 Sum_probs=23.6
Q ss_pred eeeEcCCCcEEEEeCcEEEEEcCCcEEEEEeeC
Q 032626 8 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKH 40 (137)
Q Consensus 8 ~pI~IP~gV~Vti~~~~v~VkGp~G~l~~~l~~ 40 (137)
..|++|+|-++......-.++.|-|++++.+..
T Consensus 41 yti~~pegm~l~t~~~~K~I~N~~Gk~~isv~~ 73 (116)
T PF12970_consen 41 YTIELPEGMKLVTPPMEKKIDNPVGKVSISVKP 73 (116)
T ss_dssp EEEEE-TT-EE-S--S-EEEEETTEEEEEEEEE
T ss_pred EEEEcCCCCeeecCccceeccCCcceEEEEEEe
Confidence 468999999988888888999999999999874
No 16
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=64.39 E-value=9.4 Score=29.38 Aligned_cols=26 Identities=35% Similarity=0.400 Sum_probs=16.3
Q ss_pred eeEcCCCcEEEEeCcEEEEEcCCcEE
Q 032626 9 TMDIPDGVKVKINAKVIEVEGPRGKL 34 (137)
Q Consensus 9 pI~IP~gV~Vti~~~~v~VkGp~G~l 34 (137)
.+.||+||+++..+..+.++|..=++
T Consensus 120 ~~~iP~gV~v~~~~t~I~i~GiDKq~ 145 (180)
T PRK05518 120 RAKILGGVKVKVKGEDVIVEGIDKED 145 (180)
T ss_pred EEeCCCCeEEEecCCEEEEEeCCHHH
Confidence 34667777777655556666665443
No 17
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=63.05 E-value=11 Score=24.95 Aligned_cols=25 Identities=28% Similarity=0.643 Sum_probs=17.5
Q ss_pred ceeeEcCCCcE-----EEE-eCcEEEEEcCC
Q 032626 7 SETMDIPDGVK-----VKI-NAKVIEVEGPR 31 (137)
Q Consensus 7 ~~pI~IP~gV~-----Vti-~~~~v~VkGp~ 31 (137)
.+.+.+|++|+ .++ +++.|+|+-|+
T Consensus 53 ~R~~~LP~~vd~~~i~A~~~~dGvL~I~~PK 83 (83)
T cd06478 53 HRRYRLPPGVDPAAITSSLSADGVLTISGPR 83 (83)
T ss_pred EEEEECCCCcChHHeEEEECCCCEEEEEecC
Confidence 35678888764 666 47778877775
No 18
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=62.79 E-value=29 Score=23.07 Aligned_cols=20 Identities=20% Similarity=0.546 Sum_probs=18.2
Q ss_pred CCCcEEEEeCcEEEEEcCCc
Q 032626 13 PDGVKVKINAKVIEVEGPRG 32 (137)
Q Consensus 13 P~gV~Vti~~~~v~VkGp~G 32 (137)
|++++|+++++.|.|+|.+.
T Consensus 20 ~edi~I~~~~~~L~I~g~~~ 39 (102)
T PF00011_consen 20 KEDIKIKVDDNKLVISGKRK 39 (102)
T ss_dssp GGGEEEEEETTEEEEEEEEE
T ss_pred hHHEEEEEecCccceeceee
Confidence 47999999999999999887
No 19
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=61.43 E-value=11 Score=28.80 Aligned_cols=26 Identities=27% Similarity=0.599 Sum_probs=19.3
Q ss_pred eeEcCCCcEEEEeCc-EEEEEcCCcEE
Q 032626 9 TMDIPDGVKVKINAK-VIEVEGPRGKL 34 (137)
Q Consensus 9 pI~IP~gV~Vti~~~-~v~VkGp~G~l 34 (137)
.+.||+||+|++.+. .|.++|..=+.
T Consensus 114 ~~~IP~gv~v~~~~~t~I~i~G~dke~ 140 (178)
T CHL00140 114 KIKIPPGISVEVENNTNITIKGIDKEL 140 (178)
T ss_pred EEECCCCeEEEeCCCCEEEEEECCHHH
Confidence 457899999988765 68888876443
No 20
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=60.29 E-value=5.8 Score=26.60 Aligned_cols=20 Identities=15% Similarity=0.504 Sum_probs=17.5
Q ss_pred CCCcEEEEeCcEEEEEcCCc
Q 032626 13 PDGVKVKINAKVIEVEGPRG 32 (137)
Q Consensus 13 P~gV~Vti~~~~v~VkGp~G 32 (137)
|+.++|++.++.|+|+|-+.
T Consensus 20 ~edI~V~v~~~~L~I~ge~~ 39 (83)
T cd06477 20 PEDIIIQVFEGWLLIKGQHG 39 (83)
T ss_pred HHHeEEEEECCEEEEEEEEc
Confidence 67999999999999999653
No 21
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=59.36 E-value=7.4 Score=25.76 Aligned_cols=19 Identities=26% Similarity=0.632 Sum_probs=16.5
Q ss_pred CCCcEEEEeCcEEEEEcCC
Q 032626 13 PDGVKVKINAKVIEVEGPR 31 (137)
Q Consensus 13 P~gV~Vti~~~~v~VkGp~ 31 (137)
|+.++|++.++.|+|+|..
T Consensus 20 ~edI~V~v~~~~L~I~g~~ 38 (83)
T cd06478 20 PEELSVKVLGDFVEIHGKH 38 (83)
T ss_pred HHHeEEEEECCEEEEEEEE
Confidence 5789999999999999953
No 22
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=58.40 E-value=6.5 Score=26.21 Aligned_cols=18 Identities=39% Similarity=0.730 Sum_probs=16.4
Q ss_pred CCCcEEEEeCcEEEEEcC
Q 032626 13 PDGVKVKINAKVIEVEGP 30 (137)
Q Consensus 13 P~gV~Vti~~~~v~VkGp 30 (137)
|+.++|++.++.|+|+|-
T Consensus 20 ~edi~V~v~~~~L~I~g~ 37 (84)
T cd06498 20 PEELKVKVLGDFIEIHGK 37 (84)
T ss_pred HHHeEEEEECCEEEEEEE
Confidence 689999999999999994
No 23
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=58.37 E-value=6.6 Score=26.21 Aligned_cols=19 Identities=26% Similarity=0.536 Sum_probs=16.9
Q ss_pred CCCcEEEEeCcEEEEEcCC
Q 032626 13 PDGVKVKINAKVIEVEGPR 31 (137)
Q Consensus 13 P~gV~Vti~~~~v~VkGp~ 31 (137)
|+.++|++.++.|+|+|-+
T Consensus 20 ~edi~V~v~~~~L~I~g~~ 38 (83)
T cd06476 20 PDEITVRTVDNLLEVSARH 38 (83)
T ss_pred HHHeEEEEECCEEEEEEEE
Confidence 6799999999999999964
No 24
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=56.66 E-value=47 Score=20.82 Aligned_cols=28 Identities=14% Similarity=0.106 Sum_probs=22.5
Q ss_pred CCCcEEEEeCcEEEEEcCCcEEEEEeeC
Q 032626 13 PDGVKVKINAKVIEVEGPRGKLSRDFKH 40 (137)
Q Consensus 13 P~gV~Vti~~~~v~VkGp~G~l~~~l~~ 40 (137)
|++++|+++++.+++.++.=.++++|++
T Consensus 19 ~~~v~v~~~~~~l~i~~~~~~~~~~l~~ 46 (78)
T cd06469 19 TSKVDIFCSDLYLKVNFPPYLFELDLAA 46 (78)
T ss_pred cccceEEEecCEEEEcCCCEEEEEeCcc
Confidence 6789999999999999965556677774
No 25
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=56.47 E-value=11 Score=22.78 Aligned_cols=20 Identities=25% Similarity=0.616 Sum_probs=17.1
Q ss_pred CCCcEEEEeCcEEEEEcCCc
Q 032626 13 PDGVKVKINAKVIEVEGPRG 32 (137)
Q Consensus 13 P~gV~Vti~~~~v~VkGp~G 32 (137)
|+.++|+++++.|.|+|...
T Consensus 19 ~~~i~v~~~~~~l~v~~~~~ 38 (80)
T cd00298 19 KEDIKVEVEDNVLTISGKRE 38 (80)
T ss_pred HHHeEEEEECCEEEEEEEEc
Confidence 47899999999999998765
No 26
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=55.90 E-value=16 Score=27.85 Aligned_cols=26 Identities=31% Similarity=0.580 Sum_probs=18.3
Q ss_pred eeEcCCCcEEEEeCc-EEEEEcCCcEE
Q 032626 9 TMDIPDGVKVKINAK-VIEVEGPRGKL 34 (137)
Q Consensus 9 pI~IP~gV~Vti~~~-~v~VkGp~G~l 34 (137)
.+.||++|+|++.+. .+.++|+.=+.
T Consensus 113 ~~~Ip~~v~v~~~~~t~I~i~G~dke~ 139 (175)
T TIGR03654 113 EYEIPEGITVEVPKPTEIVVKGIDKQL 139 (175)
T ss_pred EEECCCCeEEEeCCCCEEEEEECCHHH
Confidence 357888888888665 57787776443
No 27
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=55.78 E-value=7.7 Score=25.94 Aligned_cols=19 Identities=26% Similarity=0.613 Sum_probs=16.9
Q ss_pred CCCcEEEEeCcEEEEEcCC
Q 032626 13 PDGVKVKINAKVIEVEGPR 31 (137)
Q Consensus 13 P~gV~Vti~~~~v~VkGp~ 31 (137)
|+.++|++.++.|+|+|.+
T Consensus 23 ~edi~V~v~~~~L~I~g~~ 41 (86)
T cd06497 23 PEDLTVKVLDDYVEIHGKH 41 (86)
T ss_pred HHHeEEEEECCEEEEEEEE
Confidence 5799999999999999964
No 28
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=55.08 E-value=8 Score=26.50 Aligned_cols=20 Identities=30% Similarity=0.551 Sum_probs=17.6
Q ss_pred CCCcEEEEeCcEEEEEcCCc
Q 032626 13 PDGVKVKINAKVIEVEGPRG 32 (137)
Q Consensus 13 P~gV~Vti~~~~v~VkGp~G 32 (137)
|+.++|++.++.|+|+|.+.
T Consensus 28 pEDL~Vkv~~~~L~V~Gkh~ 47 (91)
T cd06480 28 PEELTVKTKDGFVEVSGKHE 47 (91)
T ss_pred HHHcEEEEECCEEEEEEEEC
Confidence 78999999999999998654
No 29
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=54.93 E-value=16 Score=28.26 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=14.2
Q ss_pred eEcCCCcEEEEeC---cEEEEEcCCcE
Q 032626 10 MDIPDGVKVKINA---KVIEVEGPRGK 33 (137)
Q Consensus 10 I~IP~gV~Vti~~---~~v~VkGp~G~ 33 (137)
++||+||+++..+ +.|+++|..=+
T Consensus 125 ~~iP~gv~v~~~~~~~t~I~i~G~DKq 151 (190)
T PTZ00027 125 VKMLPGVVVEKSESVKDEIIVTGADLE 151 (190)
T ss_pred EECCCCeEEEeCCCCCCEEEEEeCCHH
Confidence 4667777777654 35566665533
No 30
>PRK14940 DNA polymerase III subunit beta; Provisional
Probab=54.68 E-value=74 Score=26.53 Aligned_cols=47 Identities=11% Similarity=0.169 Sum_probs=36.0
Q ss_pred ceeeEcCCCcEEEEeCcEEEEEcCCcEEEEEeeCCcEEEEEeecccCCccEEEEE
Q 032626 7 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKID 61 (137)
Q Consensus 7 ~~pI~IP~gV~Vti~~~~v~VkGp~G~l~~~l~~~~v~i~~~~~~~~~~~~l~i~ 61 (137)
+..++|-+||-++.+++.|+++|-.+++.+... .+..+. ++ +.+.+.
T Consensus 24 k~~~piL~~ill~a~~~~l~l~atD~e~~i~~~-i~~~i~---e~----G~v~v~ 70 (367)
T PRK14940 24 KKALSILSNVLLAAQDGSLTIKATDTKVSFETS-IPVNIL---AE----GSTTVF 70 (367)
T ss_pred CCchHHhcCEEEEEECCEEEEEEECCceEEEEE-EEeeec---cC----eEEEEE
Confidence 445678899999999999999999999998865 333333 33 677775
No 31
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=54.61 E-value=17 Score=27.72 Aligned_cols=26 Identities=31% Similarity=0.580 Sum_probs=18.1
Q ss_pred eeEcCCCcEEEEeCc-EEEEEcCCcEE
Q 032626 9 TMDIPDGVKVKINAK-VIEVEGPRGKL 34 (137)
Q Consensus 9 pI~IP~gV~Vti~~~-~v~VkGp~G~l 34 (137)
.+.||+||+|++.+. .+.++|..=+.
T Consensus 114 ~~~Ip~gv~v~~~~~t~I~i~G~dke~ 140 (178)
T PRK05498 114 EYEIPEGITVEVPKPTEIVVKGIDKQL 140 (178)
T ss_pred EEECCCCeEEEeCCCCEEEEEECCHHH
Confidence 457888888887665 57777776443
No 32
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=54.26 E-value=9.2 Score=25.61 Aligned_cols=19 Identities=26% Similarity=0.704 Sum_probs=16.9
Q ss_pred CCCcEEEEeCcEEEEEcCC
Q 032626 13 PDGVKVKINAKVIEVEGPR 31 (137)
Q Consensus 13 P~gV~Vti~~~~v~VkGp~ 31 (137)
|+.++|+++++.|+|+|-+
T Consensus 20 ~edI~V~v~~~~L~I~g~~ 38 (87)
T cd06481 20 PEDLSVRVDGRKLVVTGKR 38 (87)
T ss_pred hHHeEEEEECCEEEEEEEE
Confidence 6899999999999999864
No 33
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=53.92 E-value=8.6 Score=26.03 Aligned_cols=19 Identities=42% Similarity=0.674 Sum_probs=16.3
Q ss_pred CCCcEEEEeCcEEEEEcCC
Q 032626 13 PDGVKVKINAKVIEVEGPR 31 (137)
Q Consensus 13 P~gV~Vti~~~~v~VkGp~ 31 (137)
|+.++|++.++.|+|+|-+
T Consensus 21 kedI~V~v~~~~L~I~ger 39 (87)
T cd06482 21 PDQVKVKVKDGKVQVSAER 39 (87)
T ss_pred HHHeEEEEECCEEEEEEEE
Confidence 4689999999999999954
No 34
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=51.36 E-value=10 Score=24.80 Aligned_cols=20 Identities=35% Similarity=0.627 Sum_probs=17.3
Q ss_pred CCCcEEEEeCcEEEEEcCCc
Q 032626 13 PDGVKVKINAKVIEVEGPRG 32 (137)
Q Consensus 13 P~gV~Vti~~~~v~VkGp~G 32 (137)
|+.++|+++++.|+|+|...
T Consensus 20 ~edI~v~v~~~~L~I~g~~~ 39 (83)
T cd06526 20 PEELKVKVSDNKLVVEGKHE 39 (83)
T ss_pred HHHcEEEEECCEEEEEEEEe
Confidence 57899999999999999754
No 35
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=51.30 E-value=36 Score=24.64 Aligned_cols=20 Identities=10% Similarity=0.521 Sum_probs=17.6
Q ss_pred CCCcEEEEeCcEEEEEcCCc
Q 032626 13 PDGVKVKINAKVIEVEGPRG 32 (137)
Q Consensus 13 P~gV~Vti~~~~v~VkGp~G 32 (137)
|+.++|++.++.|+|+|-..
T Consensus 63 kedI~I~~~~~~l~I~g~~~ 82 (146)
T COG0071 63 KEDIEITVEGNTLTIRGERE 82 (146)
T ss_pred hHHeEEEEECCEEEEEEEec
Confidence 47899999999999999874
No 36
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=49.54 E-value=12 Score=25.00 Aligned_cols=19 Identities=32% Similarity=0.609 Sum_probs=16.3
Q ss_pred CCCcEEEEeCcEEEEEcCC
Q 032626 13 PDGVKVKINAKVIEVEGPR 31 (137)
Q Consensus 13 P~gV~Vti~~~~v~VkGp~ 31 (137)
|+.++|++.++.|+|+|-+
T Consensus 23 ~edi~V~v~~~~L~I~g~~ 41 (86)
T cd06475 23 PEELVVKTKDGVVEITGKH 41 (86)
T ss_pred HHHEEEEEECCEEEEEEEE
Confidence 5788999999999999864
No 37
>PF14324 PINIT: PINIT domain; PDB: 3I2D_A.
Probab=48.34 E-value=9.4 Score=27.99 Aligned_cols=31 Identities=23% Similarity=0.438 Sum_probs=16.7
Q ss_pred ccceeeEcCCCcEEEEeCcEEE--EEcCCcEEE
Q 032626 5 LSSETMDIPDGVKVKINAKVIE--VEGPRGKLS 35 (137)
Q Consensus 5 lg~~pI~IP~gV~Vti~~~~v~--VkGp~G~l~ 35 (137)
-+..+|+.|..++|.+++..+. .+||+++--
T Consensus 72 ~~~q~i~FP~~~evkvN~~~v~~~~~glknKpG 104 (144)
T PF14324_consen 72 SGNQPIEFPPPCEVKVNGKQVKLNNRGLKNKPG 104 (144)
T ss_dssp GGGB-----SSEEEEETTEE--S--SS-TTS-G
T ss_pred CCccccccCCCeEEEEeCEEcccCccCCCCCCC
Confidence 4678999999999999998886 667665443
No 38
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=47.16 E-value=27 Score=27.01 Aligned_cols=12 Identities=33% Similarity=0.254 Sum_probs=6.9
Q ss_pred eEcCCCcEEEEe
Q 032626 10 MDIPDGVKVKIN 21 (137)
Q Consensus 10 I~IP~gV~Vti~ 21 (137)
+.||+||+|+..
T Consensus 122 ~~ip~gv~v~~~ 133 (189)
T PTZ00179 122 QVVADTVKVYRT 133 (189)
T ss_pred EECCCCEEEEec
Confidence 455666666554
No 39
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=45.06 E-value=14 Score=24.58 Aligned_cols=19 Identities=16% Similarity=0.515 Sum_probs=16.2
Q ss_pred CCCcEEEEeCcEEEEEcCC
Q 032626 13 PDGVKVKINAKVIEVEGPR 31 (137)
Q Consensus 13 P~gV~Vti~~~~v~VkGp~ 31 (137)
|++++|+++++.|+|+|..
T Consensus 24 kedi~v~~~~~~L~I~g~~ 42 (90)
T cd06470 24 EDDLEIEVENNQLTVTGKK 42 (90)
T ss_pred HHHeEEEEECCEEEEEEEE
Confidence 4689999999999999863
No 40
>PRK14945 DNA polymerase III subunit beta; Provisional
Probab=41.76 E-value=1.1e+02 Score=25.40 Aligned_cols=47 Identities=11% Similarity=0.258 Sum_probs=34.9
Q ss_pred ceeeEcCCCcEEEEeCcEEEEEcCCcEEEEEeeCCcEEEEEeecccCCccEEEEE
Q 032626 7 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKID 61 (137)
Q Consensus 7 ~~pI~IP~gV~Vti~~~~v~VkGp~G~l~~~l~~~~v~i~~~~~~~~~~~~l~i~ 61 (137)
+..++|=+||-++.+++.|++.|-.+++++... ....+. ++ +.+.+.
T Consensus 24 k~~~piL~~ili~a~~~~l~l~atd~~~~i~~~-i~~~i~---~~----G~~~v~ 70 (362)
T PRK14945 24 RSSNPLLTYLKVELSEGGLTLSGTNGEVDLEVT-LPAEVQ---GP----GRVVVP 70 (362)
T ss_pred CCchhhhcCEEEEEeCCEEEEEEECCcEEEEEE-Eeeeec---cC----eEEEEE
Confidence 444555699999999999999999999998865 333333 33 677775
No 41
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=40.12 E-value=18 Score=26.73 Aligned_cols=19 Identities=11% Similarity=0.438 Sum_probs=16.5
Q ss_pred CCCcEEEEeCcEEEEEcCC
Q 032626 13 PDGVKVKINAKVIEVEGPR 31 (137)
Q Consensus 13 P~gV~Vti~~~~v~VkGp~ 31 (137)
|++++|+++++.|+|+|-.
T Consensus 56 kedi~V~v~~~~LtI~ge~ 74 (142)
T PRK11597 56 QEDLDIQLEGTRLTVKGTP 74 (142)
T ss_pred HHHeEEEEECCEEEEEEEE
Confidence 4689999999999999964
No 42
>PRK10743 heat shock protein IbpA; Provisional
Probab=40.02 E-value=18 Score=26.43 Aligned_cols=18 Identities=11% Similarity=0.372 Sum_probs=15.7
Q ss_pred CCCcEEEEeCcEEEEEcC
Q 032626 13 PDGVKVKINAKVIEVEGP 30 (137)
Q Consensus 13 P~gV~Vti~~~~v~VkGp 30 (137)
|++++|+++++.|+|+|-
T Consensus 58 kedi~V~v~~~~LtI~ge 75 (137)
T PRK10743 58 ESELEITAQDNLLVVKGA 75 (137)
T ss_pred HHHeEEEEECCEEEEEEE
Confidence 467899999999999985
No 43
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=38.52 E-value=21 Score=23.61 Aligned_cols=18 Identities=11% Similarity=0.364 Sum_probs=15.8
Q ss_pred CCcEEEEeCcEEEEEcCC
Q 032626 14 DGVKVKINAKVIEVEGPR 31 (137)
Q Consensus 14 ~gV~Vti~~~~v~VkGp~ 31 (137)
+.++|+++++.|+|+|-+
T Consensus 24 edi~v~~~~~~L~I~g~~ 41 (93)
T cd06471 24 EDIKLDYKDGYLTISAKR 41 (93)
T ss_pred HHeEEEEECCEEEEEEEE
Confidence 788999999999998855
No 44
>PF10162 G8: G8 domain; InterPro: IPR019316 This entry represents a domain found in disease proteins PKHD1 and KIAA1199 and is named G8 after its 8 conserved glycines. It is predicted to contain 10 beta strands and an alpha helix [].
Probab=36.64 E-value=1.3e+02 Score=21.34 Aligned_cols=36 Identities=19% Similarity=0.356 Sum_probs=27.1
Q ss_pred ceeeEcCCCcEEEEeCc-----EEEEEcCCcEEEEEeeCCcEEEE
Q 032626 7 SETMDIPDGVKVKINAK-----VIEVEGPRGKLSRDFKHLNLDFH 46 (137)
Q Consensus 7 ~~pI~IP~gV~Vti~~~-----~v~VkGp~G~l~~~l~~~~v~i~ 46 (137)
...+.||+|..|.++.+ .+.| .|+|.++-. .++.+.
T Consensus 12 g~~V~I~~g~~v~lD~~~~~l~~l~I---~G~L~f~~~-~~~~L~ 52 (125)
T PF10162_consen 12 GDNVVIPAGQTVLLDVSTPKLGSLII---GGTLIFDDD-RDITLR 52 (125)
T ss_pred CCEEEECCCCEEEEcCCChheeEEEE---EEEEEEccC-CCCEEE
Confidence 45789999999999876 5667 888888854 455544
No 45
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=35.71 E-value=25 Score=22.20 Aligned_cols=20 Identities=25% Similarity=0.586 Sum_probs=17.0
Q ss_pred CCCcEEEEeCcEEEEEcCCc
Q 032626 13 PDGVKVKINAKVIEVEGPRG 32 (137)
Q Consensus 13 P~gV~Vti~~~~v~VkGp~G 32 (137)
|+.++|++.++.|.|+|.+-
T Consensus 20 ~~~i~V~v~~~~l~I~g~~~ 39 (88)
T cd06464 20 KEDIKVEVEDGVLTISGERE 39 (88)
T ss_pred HHHeEEEEECCEEEEEEEEe
Confidence 37899999999999997664
No 46
>PF04521 Viral_P18: ssRNA positive strand viral 18kD cysteine rich protein; InterPro: IPR007609 This family represents the 18kDa cysteine-rich protein from ssRNA positive strand viruses.
Probab=34.08 E-value=16 Score=26.51 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=22.4
Q ss_pred eeeeeEEECCCCceEEEeecCCCceee
Q 032626 101 HFPINASIGNNNKAIEIRNFLGEKKVP 127 (137)
Q Consensus 101 gf~~~~~v~~~g~~v~i~nflgek~~r 127 (137)
|-|.++..++....+.+.+|=|||+--
T Consensus 36 GMpaa~~l~~~~~~l~~dgfCGeKH~~ 62 (120)
T PF04521_consen 36 GMPAAFELEDGHPELPIDGFCGEKHKG 62 (120)
T ss_pred CCcceeecCCCCCcccccccccHhHHH
Confidence 567777778888899999999999753
No 47
>PF00712 DNA_pol3_beta: DNA polymerase III beta subunit, N-terminal domain; InterPro: IPR022634 This entry describes the N-terminal domain of the beta chain of DNA polymerase III. This is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The beta chain is required for initiation of replication from an RNA primer, nucleotide triphosphate (dNTP) residues being added to the 5'-end of the growing DNA chain.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3P16_A 3RB9_B 2AWA_C 1VPK_A 2XUR_B 3Q4K_A 3BEP_A 3D1G_A 1UNN_B 3Q4J_D ....
Probab=32.93 E-value=1.4e+02 Score=20.52 Aligned_cols=48 Identities=8% Similarity=0.184 Sum_probs=34.0
Q ss_pred ceeeEcCCCcEEEEeCcEEEEEcCCcEEEEEeeCCcEEEEEeecccCCccEEEEE
Q 032626 7 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKID 61 (137)
Q Consensus 7 ~~pI~IP~gV~Vti~~~~v~VkGp~G~l~~~l~~~~v~i~~~~~~~~~~~~l~i~ 61 (137)
+.+++|=+||-++.+++.|++++-..++.+... .+.... .++ +.+.+.
T Consensus 24 k~~~piL~~ili~a~~~~l~l~atD~e~~i~~~-i~~~~~--~~~----G~~~v~ 71 (120)
T PF00712_consen 24 KSTIPILSNILIEAKDNKLTLTATDLEISIRTT-IPAEIE--EEE----GSILVP 71 (120)
T ss_dssp SSSSGGGGEEEEEEETTEEEEEEE-SSEEEEEE-EETEEE--EE-----EEEEEE
T ss_pred CCChHHhccEEEEEeCCEEEEEEEcCeEEEEEE-Eeceee--cCC----eEEEEE
Confidence 445566789999999999999999999888865 333333 133 677775
No 48
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=31.61 E-value=43 Score=25.54 Aligned_cols=47 Identities=34% Similarity=0.523 Sum_probs=32.6
Q ss_pred cCCCcEEEEeCcEEEEEcCC-------cEEEEEeeCC-----c-----EEEEEeecccCCccEEEEEec
Q 032626 12 IPDGVKVKINAKVIEVEGPR-------GKLSRDFKHL-----N-----LDFHLMTDEETGKRKLKIDAW 63 (137)
Q Consensus 12 IP~gV~Vti~~~~v~VkGp~-------G~l~~~l~~~-----~-----v~i~~~~~~~~~~~~l~i~~~ 63 (137)
-|+.++|.+.++.|.|+|.. |.+++.|... . |.-.+ ..+ |.|.|+..
T Consensus 84 ~PeEl~Vk~~~~~l~V~gkHeer~d~~G~v~R~F~R~y~LP~~vdp~~V~S~L-S~d----GvLtI~ap 147 (173)
T KOG3591|consen 84 KPEELKVKTDDNTLEVEGKHEEKEDEHGYVSRSFVRKYLLPEDVDPTSVTSTL-SSD----GVLTIEAP 147 (173)
T ss_pred cccceEEEeCCCEEEEEeeeccccCCCCeEEEEEEEEecCCCCCChhheEEee-CCC----ceEEEEcc
Confidence 49999999999999999876 5566666541 1 22233 233 78888865
No 49
>PRK14947 DNA polymerase III subunit beta; Provisional
Probab=31.33 E-value=3e+02 Score=23.25 Aligned_cols=47 Identities=2% Similarity=-0.012 Sum_probs=35.9
Q ss_pred ceeeEcCCCcEEEEeCcEEEEEcCCcEEEEEeeCCcEEEEEeecccCCccEEEEE
Q 032626 7 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKID 61 (137)
Q Consensus 7 ~~pI~IP~gV~Vti~~~~v~VkGp~G~l~~~l~~~~v~i~~~~~~~~~~~~l~i~ 61 (137)
+..++|=+||-++.+++.|+++|-.+++.+... .++.+. +. +.+.+.
T Consensus 24 k~~~pIL~~ili~a~~~~L~l~atD~ei~i~~~-i~~~i~---e~----G~~~v~ 70 (384)
T PRK14947 24 KTGAAYLRTIWLKAEDGTLSIMSTDSNIEFRGT-YPAEVT---EP----GLAGVQ 70 (384)
T ss_pred CCcchhhcCEEEEEECCEEEEEEECCcEEEEEE-Eeeeec---cC----eEEEEE
Confidence 455677899999999999999999999999865 333333 33 677775
No 50
>PRK14944 DNA polymerase III subunit beta; Provisional
Probab=29.51 E-value=2.7e+02 Score=23.37 Aligned_cols=49 Identities=12% Similarity=0.266 Sum_probs=36.2
Q ss_pred ceeeEcCCCcEEEEeCcEEEEEcCCcEEEEEeeCCcEE-EEEeecccCCccEEEEE
Q 032626 7 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLD-FHLMTDEETGKRKLKID 61 (137)
Q Consensus 7 ~~pI~IP~gV~Vti~~~~v~VkGp~G~l~~~l~~~~v~-i~~~~~~~~~~~~l~i~ 61 (137)
+.+++|-+||-++.+++.|+++|-.+++++... .+.. .++. +. |.+.+.
T Consensus 24 k~~~piL~~ili~a~~~~l~l~atD~ei~i~~~-i~~~~~~v~-e~----G~v~v~ 73 (375)
T PRK14944 24 KTFFPIFNALKIQTKKNFLILEANNGNIAIKIE-IKDESLKIK-KE----GKIACL 73 (375)
T ss_pred CCCchhhcCEEEEEECCEEEEEEECccEEEEEE-EeCCcceee-cc----eEEEEe
Confidence 556788899999999999999999999999865 2221 2231 33 677775
No 51
>PF12119 DUF3581: Protein of unknown function (DUF3581); InterPro: IPR021974 This family consists of uncharacterised bacterial proteins.
Probab=29.47 E-value=80 Score=25.19 Aligned_cols=26 Identities=23% Similarity=0.606 Sum_probs=23.5
Q ss_pred CCcEEEEeCcEEEEEcCCcEEEEEee
Q 032626 14 DGVKVKINAKVIEVEGPRGKLSRDFK 39 (137)
Q Consensus 14 ~gV~Vti~~~~v~VkGp~G~l~~~l~ 39 (137)
+.+++++.+..+.|.|.+|...+.|.
T Consensus 166 ~~~~l~l~~~~l~v~GKRG~v~L~F~ 191 (218)
T PF12119_consen 166 TSPELELAGATLEVDGKRGDVTLNFE 191 (218)
T ss_pred CCCeeEeccceeEeecceeeEEEEEE
Confidence 37888999999999999999999987
No 52
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=29.14 E-value=1.1e+02 Score=18.73 Aligned_cols=28 Identities=21% Similarity=0.200 Sum_probs=20.8
Q ss_pred CCCcEEEEeCcEEEEEcCC---c--EEEEEeeC
Q 032626 13 PDGVKVKINAKVIEVEGPR---G--KLSRDFKH 40 (137)
Q Consensus 13 P~gV~Vti~~~~v~VkGp~---G--~l~~~l~~ 40 (137)
++.++|+++++.++++... + .+.++|++
T Consensus 19 ~~~~~v~~~~~~l~i~~~~~~~~~~~~~~~L~~ 51 (84)
T cd06463 19 KKDVKVEFTPKSLTVSVKGGGGKEYLLEGELFG 51 (84)
T ss_pred ccceEEEEecCEEEEEeeCCCCCceEEeeEccC
Confidence 5789999999999888754 2 46666663
No 53
>PF04213 HtaA: Htaa; InterPro: IPR007331 This domain is found in HtaA, a secreted protein implicated in iron acquisition and transport [].
Probab=28.01 E-value=2.6e+02 Score=20.90 Aligned_cols=36 Identities=17% Similarity=0.220 Sum_probs=26.1
Q ss_pred CcEEEEEcCCcEEEEEeeCCcEEEEEeecccCCccEEEEEec
Q 032626 22 AKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAW 63 (137)
Q Consensus 22 ~~~v~VkGp~G~l~~~l~~~~v~i~~~~~~~~~~~~l~i~~~ 63 (137)
++.|.+.|+.|.|.+.+.++.|.+. ... .+|.....
T Consensus 65 ~G~V~f~gh~g~Ldlt~snp~I~~~--g~~----g~L~adv~ 100 (168)
T PF04213_consen 65 SGSVRFTGHHGILDLTISNPRIVFD--GGT----GTLYADVS 100 (168)
T ss_pred CCEEEEEeeCCeEEEEEeCCEEEEE--CCe----EEEEEEEE
Confidence 5689999999999999987655555 332 56666643
No 54
>PF02495 7kD_coat: 7kD viral coat protein; InterPro: IPR003411 This family consists of a 7 kDa coat protein from Carlavirus and Potexvirus [].
Probab=27.19 E-value=85 Score=19.42 Aligned_cols=18 Identities=11% Similarity=0.300 Sum_probs=15.7
Q ss_pred cCCCcEEEEeCcEEEEEc
Q 032626 12 IPDGVKVKINAKVIEVEG 29 (137)
Q Consensus 12 IP~gV~Vti~~~~v~VkG 29 (137)
-++++.|.++|..++++|
T Consensus 23 ~~~~C~I~ItGeSv~I~g 40 (59)
T PF02495_consen 23 SSPSCVIVITGESVTISG 40 (59)
T ss_pred CCCCcEEEEeCcEEEEEC
Confidence 368899999999999988
No 55
>COG4758 Predicted membrane protein [Function unknown]
Probab=26.47 E-value=54 Score=26.49 Aligned_cols=23 Identities=13% Similarity=0.475 Sum_probs=19.1
Q ss_pred ceeccceeeEcCCCcEEEEeCcE
Q 032626 2 KTILSSETMDIPDGVKVKINAKV 24 (137)
Q Consensus 2 k~~lg~~pI~IP~gV~Vti~~~~ 24 (137)
+..+|+..|-+|++|.|+++...
T Consensus 164 r~~~G~~~IiVP~Dv~Vsl~~t~ 186 (235)
T COG4758 164 RKMIGNTKIIVPEDVGVSLDVTA 186 (235)
T ss_pred EeecCceEEEEecceEEEEEEEE
Confidence 56789999999999999987543
No 56
>PF10133 RNA_bind_2: Predicted RNA-binding protein; InterPro: IPR019300 This entry represents a family of bacterial proteins predicted to have RNA-binding properties, though their exact function has not yet been defined.
Probab=26.07 E-value=89 Score=19.82 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=17.5
Q ss_pred CceEEEeecCCCceeeEEeccc
Q 032626 112 NKAIEIRNFLGEKKVPFFNSIS 133 (137)
Q Consensus 112 g~~v~i~nflgek~~r~~~~~~ 133 (137)
|..+..+|.||++..-..++-.
T Consensus 28 ~~~i~l~dIfG~~k~v~g~I~~ 49 (61)
T PF10133_consen 28 GDKIRLTDIFGEQKEVEGRIKE 49 (61)
T ss_pred CCEEEEEeccCCeEEEEEEEEE
Confidence 4569999999999887776543
No 57
>PF07481 DUF1521: Domain of Unknown Function (DUF1521); InterPro: IPR011086 This domain of unknown function is found in a limited set of Bradyrhizobium proteins. There appears to be a periodic -DG- motif in the domain.
Probab=25.77 E-value=1.4e+02 Score=23.02 Aligned_cols=32 Identities=22% Similarity=0.400 Sum_probs=26.3
Q ss_pred ccceeeEcCCCcEEEEeC--cEEEEEcCC-cEEEE
Q 032626 5 LSSETMDIPDGVKVKINA--KVIEVEGPR-GKLSR 36 (137)
Q Consensus 5 lg~~pI~IP~gV~Vti~~--~~v~VkGp~-G~l~~ 36 (137)
=|+..|.+|.+-++++++ ..++|.+|. |+.++
T Consensus 7 dgkati~lgd~Y~I~~~e~ds~~~itnk~tG~~Tr 41 (171)
T PF07481_consen 7 DGKATIDLGDGYTIEANEKDSEWTITNKQTGETTR 41 (171)
T ss_pred CCeeEEecCCceEEEecCCcceEEEecCCCCcEeE
Confidence 368899999999999987 489999994 66654
No 58
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=25.69 E-value=1.4e+02 Score=19.63 Aligned_cols=21 Identities=19% Similarity=0.427 Sum_probs=11.5
Q ss_pred eeeEcCCCc-----EEEEeCcEEEEE
Q 032626 8 ETMDIPDGV-----KVKINAKVIEVE 28 (137)
Q Consensus 8 ~pI~IP~gV-----~Vti~~~~v~Vk 28 (137)
+.|.+|++| +.+++++.|+|+
T Consensus 64 r~i~LP~~v~~~~i~A~~~nGvL~I~ 89 (92)
T cd06472 64 RRFRLPENADADEVKAFLENGVLTVT 89 (92)
T ss_pred EEEECCCCCCHHHCEEEEECCEEEEE
Confidence 456777665 444555554444
No 59
>PRK14942 DNA polymerase III subunit beta; Provisional
Probab=25.08 E-value=2.1e+02 Score=24.01 Aligned_cols=47 Identities=11% Similarity=0.109 Sum_probs=36.3
Q ss_pred ceeeEcCCCcEEEEeCcEEEEEcCCcEEEEEeeCCcEEEEEeecccCCccEEEEE
Q 032626 7 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKID 61 (137)
Q Consensus 7 ~~pI~IP~gV~Vti~~~~v~VkGp~G~l~~~l~~~~v~i~~~~~~~~~~~~l~i~ 61 (137)
+..++|-+||-++.+++.|++.|-.+++.+... .+.++. ++ |.+.+.
T Consensus 24 k~~~pIL~~ili~a~~~~l~l~atD~ei~i~~~-i~~~i~---e~----G~~~vp 70 (373)
T PRK14942 24 REIKSILSNLKIEAEEKEVFLSATDLEISIKTS-VPATVG---QK----GTASLP 70 (373)
T ss_pred CCCchhhcCEEEEEECCEEEEEEECCCeEEEEE-Eeeeec---cC----eEEEEE
Confidence 455788899999999999999999999998866 333333 33 677775
No 60
>PF10882 bPH_5: Bacterial PH domain; InterPro: IPR020482 This entry contains membrane proteins with no known function.
Probab=23.11 E-value=1.3e+02 Score=19.85 Aligned_cols=23 Identities=13% Similarity=0.314 Sum_probs=20.6
Q ss_pred EEEEeCcEEEEEcCCcEEEEEee
Q 032626 17 KVKINAKVIEVEGPRGKLSRDFK 39 (137)
Q Consensus 17 ~Vti~~~~v~VkGp~G~l~~~l~ 39 (137)
+++++++.|.++++.|...+++.
T Consensus 2 ~y~v~~~~l~I~~~~~~~~Ip~~ 24 (100)
T PF10882_consen 2 RYEVDDDGLIIRWPFGKITIPLA 24 (100)
T ss_pred EEEEECCEEEEEEccccEEEEHH
Confidence 57889999999999998888886
No 61
>PF05137 PilN: Fimbrial assembly protein (PilN); InterPro: IPR007813 PilN is a plasmid-encoded, lipoprotein which locates to the outer membrane of bacteria and are part of a thin pilus required only for liquid mating [].
Probab=22.55 E-value=1.1e+02 Score=18.90 Aligned_cols=9 Identities=33% Similarity=0.785 Sum_probs=5.6
Q ss_pred EcCCCcEEE
Q 032626 11 DIPDGVKVK 19 (137)
Q Consensus 11 ~IP~gV~Vt 19 (137)
.+|+||.++
T Consensus 9 ~~P~~v~l~ 17 (78)
T PF05137_consen 9 ALPEGVWLT 17 (78)
T ss_pred hCCCCEEEE
Confidence 467776654
No 62
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=21.57 E-value=55 Score=21.38 Aligned_cols=14 Identities=29% Similarity=0.776 Sum_probs=12.0
Q ss_pred CcEEEEEcCCcEEE
Q 032626 22 AKVIEVEGPRGKLS 35 (137)
Q Consensus 22 ~~~v~VkGp~G~l~ 35 (137)
|..|.++||.|+..
T Consensus 85 Gd~v~i~gP~G~f~ 98 (99)
T PF00970_consen 85 GDEVEIRGPYGNFT 98 (99)
T ss_dssp TSEEEEEEEESSEE
T ss_pred CCEEEEEEcccccC
Confidence 68899999999865
No 63
>PF09922 DUF2154: Cell wall-active antibiotics response protein (DUF2154); InterPro: IPR024425 This domain is found in various prokaryotic proteins, including cell wall-active antibiotic response proteins.
Probab=21.43 E-value=1e+02 Score=21.39 Aligned_cols=20 Identities=20% Similarity=0.371 Sum_probs=15.5
Q ss_pred eeccceeeEcCCCcEEEEeC
Q 032626 3 TILSSETMDIPDGVKVKINA 22 (137)
Q Consensus 3 ~~lg~~pI~IP~gV~Vti~~ 22 (137)
..+|+-.|.+|+++.|.++.
T Consensus 47 ~~~G~v~I~VP~~~~V~~~~ 66 (115)
T PF09922_consen 47 AGFGDVTIYVPEDWGVRVNV 66 (115)
T ss_pred EEEcCEEEEECCCCEEEEEE
Confidence 45788888899988888654
No 64
>PF13342 Toprim_Crpt: C-terminal repeat of topoisomerase
Probab=21.34 E-value=1.4e+02 Score=18.89 Aligned_cols=37 Identities=19% Similarity=0.246 Sum_probs=31.2
Q ss_pred HhHHHHHhhceeeeccceEEEEEEEeeeeeeeEEECCCCc
Q 032626 74 RTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNK 113 (137)
Q Consensus 74 GT~rsli~NmI~GVt~Gf~~~L~lvg~gf~~~~~v~~~g~ 113 (137)
..++.|+++--+++-+||.-+ -|--|.+.+.++++.+
T Consensus 19 ~~~~~Ll~~gkT~~ikGF~SK---~Gk~F~A~L~l~~~~~ 55 (62)
T PF13342_consen 19 EEVKELLEKGKTGLIKGFKSK---KGKPFDAYLVLDDDKK 55 (62)
T ss_pred HHHHHHHHcCCccCccCcccC---CCCEEeEEEEEcCCCe
Confidence 457889999999999999974 6888999999887754
No 65
>PF05239 PRC: PRC-barrel domain; InterPro: IPR007903 The PRC-barrel is an all beta barrel domain found in photosynthetic reaction centre subunit H of the purple bacteria. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, archaea and plants. This domain is also present at the C terminus of the pan-bacterial protein RimM, which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain [].; PDB: 2QGG_A 3H9N_A 2WJN_H 2PRC_H 5PRC_H 2X5V_H 1DXR_H 1R2C_H 3G7F_H 1PRC_H ....
Probab=20.54 E-value=98 Score=19.32 Aligned_cols=6 Identities=17% Similarity=0.606 Sum_probs=2.8
Q ss_pred cEEEEE
Q 032626 56 RKLKID 61 (137)
Q Consensus 56 ~~l~i~ 61 (137)
+.+.+.
T Consensus 68 ~~i~v~ 73 (79)
T PF05239_consen 68 DRIIVD 73 (79)
T ss_dssp TEEEES
T ss_pred CEEEEc
Confidence 345543
Done!