Query 032626
Match_columns 137
No_of_seqs 116 out of 1042
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 05:40:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032626.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032626hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_F 60S ribosomal protein L 100.0 6.8E-45 2.3E-49 279.9 14.0 129 1-133 1-129 (190)
2 3u5e_H L8, RP24, YL11, 60S rib 100.0 3.5E-44 1.2E-48 276.1 13.0 128 1-133 1-130 (191)
3 4a17_E RPL9, 60S ribosomal pro 100.0 1.9E-44 6.5E-49 277.0 11.1 128 1-133 1-128 (188)
4 2zkr_e 60S ribosomal protein L 100.0 1.2E-42 4.1E-47 267.8 11.8 127 1-133 1-130 (192)
5 3j21_F 50S ribosomal protein L 100.0 1.2E-41 4.2E-46 260.6 13.0 122 4-133 5-126 (184)
6 1vq8_E 50S ribosomal protein L 100.0 9.3E-41 3.2E-45 254.5 12.8 119 7-133 3-121 (178)
7 3v2d_H 50S ribosomal protein L 100.0 6.6E-40 2.3E-44 250.3 12.4 119 2-133 1-119 (180)
8 3r8s_G 50S ribosomal protein L 100.0 1.2E-39 4.2E-44 248.0 7.9 118 3-133 1-118 (176)
9 1rl6_A Protein (ribosomal prot 100.0 8E-39 2.7E-43 243.7 12.4 118 3-133 1-118 (177)
10 1nkw_E 50S ribosomal protein L 100.0 4.9E-38 1.7E-42 244.9 14.8 119 2-133 28-146 (212)
11 3bbo_I Ribosomal protein L6; l 100.0 2.4E-38 8.3E-43 248.3 7.0 120 1-133 42-162 (223)
12 2zjr_E 50S ribosomal protein L 100.0 3E-39 1E-43 247.5 -3.4 119 2-133 1-119 (185)
13 2cql_A OK/SW-CL.103, 60S ribos 100.0 3.6E-32 1.2E-36 190.1 7.2 91 1-94 8-98 (100)
14 3j21_F 50S ribosomal protein L 71.8 3.5 0.00012 30.7 3.6 22 10-31 122-143 (184)
15 1vq8_E 50S ribosomal protein L 71.2 3.8 0.00013 30.5 3.6 23 9-31 116-138 (178)
16 4fei_A Heat shock protein-rela 66.5 14 0.00047 24.1 5.4 45 13-63 29-92 (102)
17 3u5e_H L8, RP24, YL11, 60S rib 65.5 5.4 0.00018 29.9 3.5 22 10-31 126-150 (191)
18 3gla_A Low molecular weight he 65.0 23 0.00079 22.7 6.2 18 13-30 27-44 (100)
19 3q9p_A Heat shock protein beta 60.9 5.4 0.00019 25.4 2.4 19 13-31 20-38 (85)
20 4eld_A MJ16.5-P1, small heat s 60.8 30 0.001 24.4 6.6 19 13-31 79-97 (161)
21 1rl6_A Protein (ribosomal prot 59.8 6.3 0.00022 29.1 2.9 24 9-32 113-137 (177)
22 1nkw_E 50S ribosomal protein L 59.6 7.2 0.00025 29.8 3.3 26 9-34 141-167 (212)
23 2zkr_e 60S ribosomal protein L 59.5 7.8 0.00027 29.0 3.4 23 9-31 125-150 (192)
24 4a17_E RPL9, 60S ribosomal pro 59.1 6.6 0.00022 29.3 2.9 21 11-31 125-148 (188)
25 2zjr_E 50S ribosomal protein L 55.1 6.2 0.00021 29.4 2.2 25 9-33 114-139 (185)
26 3v2d_H 50S ribosomal protein L 54.2 8 0.00027 28.6 2.6 24 10-33 115-139 (180)
27 2bol_A TSP36, small heat shock 53.2 44 0.0015 26.6 7.1 47 13-64 125-187 (314)
28 3r8s_G 50S ribosomal protein L 53.0 11 0.00038 27.7 3.3 23 9-31 113-136 (176)
29 3iz5_F 60S ribosomal protein L 53.0 12 0.00041 28.0 3.4 22 10-31 125-149 (190)
30 2y1y_A Alpha-crystallin B chai 49.8 8.6 0.00029 24.6 2.0 20 13-32 19-38 (90)
31 3bbo_I Ribosomal protein L6; l 49.3 7.3 0.00025 30.0 1.8 25 9-33 157-182 (223)
32 2jug_A TUBC protein; docking d 47.7 7.8 0.00027 24.3 1.5 24 14-37 17-40 (78)
33 3l1e_A Alpha-crystallin A chai 46.4 10 0.00035 25.1 2.0 19 13-31 25-43 (106)
34 2wj5_A Heat shock protein beta 46.4 10 0.00035 24.8 2.0 20 13-32 24-43 (101)
35 3aab_A Putative uncharacterize 36.3 18 0.00062 24.3 2.0 19 13-31 47-66 (123)
36 2klr_A Alpha-crystallin B chai 36.1 17 0.00059 26.4 2.0 21 13-33 86-106 (175)
37 2lez_A Secreted effector prote 35.0 1.1E+02 0.0036 22.0 5.9 66 9-87 57-123 (145)
38 3vta_A Cucumisin; subtilisin-l 31.7 60 0.002 27.9 4.9 29 9-37 558-586 (621)
39 2bol_A TSP36, small heat shock 26.3 28 0.00095 27.8 1.8 20 13-32 247-266 (314)
40 3t0p_A DNA polymerase III, bet 25.1 94 0.0032 24.8 4.8 47 7-61 25-71 (371)
41 3kd4_A Putative protease; stru 24.8 78 0.0027 26.4 4.4 34 7-40 428-461 (506)
42 1vpz_A Carbon storage regulato 24.4 1.3E+02 0.0046 19.0 4.4 39 3-46 17-55 (73)
43 2gjh_A Designed protein; oblig 24.4 44 0.0015 19.9 2.0 18 14-31 33-50 (62)
44 1gme_A Heat shock protein 16.9 23.8 38 0.0013 23.7 2.0 19 13-31 66-85 (151)
45 3i6s_A Subtilisin-like proteas 23.3 1E+02 0.0035 26.8 4.9 30 9-38 579-608 (649)
46 2ctf_A Vigilin; K homology typ 22.4 52 0.0018 21.6 2.3 10 22-31 67-76 (102)
47 1qys_A TOP7; alpha-beta, novel 22.1 54 0.0018 21.4 2.2 23 14-36 77-101 (106)
48 2kq1_A BH0266 protein; solutio 20.6 91 0.0031 20.7 3.3 22 25-47 73-95 (119)
No 1
>3iz5_F 60S ribosomal protein L9 (L6P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_F
Probab=100.00 E-value=6.8e-45 Score=279.88 Aligned_cols=129 Identities=74% Similarity=1.172 Sum_probs=122.3
Q ss_pred CceeccceeeEcCCCcEEEEeCcEEEEEcCCcEEEEEeeCCcEEEEEeecccCCccEEEEEecCCChhhhhhhHhHHHHH
Q 032626 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHV 80 (137)
Q Consensus 1 mk~~lg~~pI~IP~gV~Vti~~~~v~VkGp~G~l~~~l~~~~v~i~~~~~~~~~~~~l~i~~~~~~k~~~a~~GT~rsli 80 (137)
||+++.++||+||+||+|+++++.|+||||+|+|+++|+|.++++.+..++ +.+.++.|+++++++|+|||+||||
T Consensus 1 Mk~i~~~~~I~IP~gV~v~i~~~~V~VkGPkG~L~~~~~~~~v~i~~~~~~----~~l~v~~~~~~kk~~a~~gt~rsli 76 (190)
T 3iz5_F 1 MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGG----RKLQVDAWFGTRRTMAAIRTAISHV 76 (190)
T ss_dssp CCCCCCCEEEECCTTCEEEEETTEEEEEETTEEEEEECCCTTEEEEEETTT----TEEEEEESCCCHHHHHHHHHHHHHH
T ss_pred CcccccCccEECCCCCEEEEeCCEEEEECCCceEEEEccCCcEEEEEEcCC----CEEEEEECCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998778888853244 7899999999999999999999999
Q ss_pred hhceeeeccceEEEEEEEeeeeeeeEEECCCCceEEEeecCCCceeeEEeccc
Q 032626 81 GNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVPFFNSIS 133 (137)
Q Consensus 81 ~NmI~GVt~Gf~~~L~lvg~gf~~~~~v~~~g~~v~i~nflgek~~r~~~~~~ 133 (137)
+|||+|||+||+|+|+++|+||||+++++++|+.|+++||||+++|+.++||.
T Consensus 77 ~NmI~GVt~Gf~~kL~lvgvgyr~~~~i~~~G~~l~l~N~LG~sh~v~~~ip~ 129 (190)
T 3iz5_F 77 QNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLE 129 (190)
T ss_dssp HHHHHHHHTCEEEEEEEECSSSCCEEEEETTTTEEEEESGGGCSSCEEEECCS
T ss_pred HhheeeeccCEEEEEEEEEEcccceeEEccCCCEEEEEecCCccccEEEECCC
Confidence 99999999999999999999999999998899999999999999999999974
No 2
>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F 1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 4b6a_H 3jyw_H
Probab=100.00 E-value=3.5e-44 Score=276.12 Aligned_cols=128 Identities=46% Similarity=0.830 Sum_probs=120.5
Q ss_pred CceeccceeeEcCCCcEEEEeCcEEEEEcCCcEEEEEeeCCcEEEEEeecccCCccEEEEEecCCChhhhhhhHhHHHHH
Q 032626 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHV 80 (137)
Q Consensus 1 mk~~lg~~pI~IP~gV~Vti~~~~v~VkGp~G~l~~~l~~~~v~i~~~~~~~~~~~~l~i~~~~~~k~~~a~~GT~rsli 80 (137)
||+++.++||+||+||+|+++++.|+||||+|+|+++|+|..+++++ .++ +++.++.|+++++++|+|||+||||
T Consensus 1 Mk~i~~~~~I~IP~gV~v~i~~~~V~VkGPkG~L~~~~~~~~v~i~~-~~~----~~l~v~~~~~~kk~~a~~gt~rsli 75 (191)
T 3u5e_H 1 MKYIQTEQQIEVPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTFTK-VNN----QLIKVAVHNGGRKHVAALRTVKSLV 75 (191)
T ss_dssp CCEEEEEEEEECCTTCEEEEETTEEEEEETTEEEEEECTTTCCEEEE-EET----TEEEEEEEEECHHHHHHHHHHHHHH
T ss_pred CceeeecccEECCCCcEEEEeCCEEEEEcCCeEEEEEccCCcEEEEE-ecC----CeEEEEECCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999976777773 234 7899999999999999999999999
Q ss_pred hhceeeeccceEEEEEEEeeeeeeeEEE--CCCCceEEEeecCCCceeeEEeccc
Q 032626 81 GNLITGVTKGYRYKMRFVYAHFPINASI--GNNNKAIEIRNFLGEKKVPFFNSIS 133 (137)
Q Consensus 81 ~NmI~GVt~Gf~~~L~lvg~gf~~~~~v--~~~g~~v~i~nflgek~~r~~~~~~ 133 (137)
+|||+|||+||+|+|+++|+||||++.+ +++|+.|+++||||+++|+.++||.
T Consensus 76 ~NmI~GVt~Gf~~kL~lvgvgyri~a~v~~~~~G~~l~l~n~LG~sh~v~~~ip~ 130 (191)
T 3u5e_H 76 DNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGDKKIRNVPVRD 130 (191)
T ss_dssp HHHHHHHHTCEEEEEEEECSSSCCEEEEECSSSCCEEEEECGGGCSSCEEEECCT
T ss_pred HhheeeeccCEEEEEEEEEEeeeEEEEEEEcCCCCEEEEEeccCCcccEEEECCC
Confidence 9999999999999999999999999988 8899999999999999999999974
No 3
>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_E 4a1c_E 4a1e_E
Probab=100.00 E-value=1.9e-44 Score=276.99 Aligned_cols=128 Identities=34% Similarity=0.733 Sum_probs=121.1
Q ss_pred CceeccceeeEcCCCcEEEEeCcEEEEEcCCcEEEEEeeCCcEEEEEeecccCCccEEEEEecCCChhhhhhhHhHHHHH
Q 032626 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHV 80 (137)
Q Consensus 1 mk~~lg~~pI~IP~gV~Vti~~~~v~VkGp~G~l~~~l~~~~v~i~~~~~~~~~~~~l~i~~~~~~k~~~a~~GT~rsli 80 (137)
||+++.++||+||+||+|+++++.|+||||+|+|+++|+|.+|++.+. ++ +++.++.|+++++++|+|||+||||
T Consensus 1 Mk~i~~~~~I~IP~gV~v~i~~~~V~VkGPkG~L~~~~~~~~v~i~~~-~~----~~l~v~~~~~~kk~~a~~gt~rsli 75 (188)
T 4a17_E 1 MRHLLTEVNVPIPDKVTITAKQRVVEVKGPLGTIKRAFRYASVDIQKP-TA----DNVKLQIWQASRKERAVLQSIASQI 75 (188)
T ss_dssp CCEEEEEEECCCCTTCEEEEETTEEEEEETTEEEEEECTTSCCEECCC-BT----TBCEEEEEEECHHHHHHHHHHHHHH
T ss_pred CceeeecccEECCCCcEEEEeCCEEEEEcCCeEEEEEccCCeEEEEEc-cC----CeEEEEECCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999667888742 44 7899999999999999999999999
Q ss_pred hhceeeeccceEEEEEEEeeeeeeeEEECCCCceEEEeecCCCceeeEEeccc
Q 032626 81 GNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVPFFNSIS 133 (137)
Q Consensus 81 ~NmI~GVt~Gf~~~L~lvg~gf~~~~~v~~~g~~v~i~nflgek~~r~~~~~~ 133 (137)
+|||+|||+||+|+|+++|+||||++.++++|+.|+++||||+++|+.++||.
T Consensus 76 ~NmI~GVt~Gf~~kL~lvgvgyr~~~~v~~~G~~l~l~N~LG~sh~v~~~ip~ 128 (188)
T 4a17_E 76 KNMIRGVTEGYKFKMKLAFAHFPIQEAVAKDGSSIEIKHFLGEKRIRRIQALP 128 (188)
T ss_dssp HHHHHHHHSCEEEEEEEECSSSCCEEEECSSSCEEEEECGGGCCCEEEEECCT
T ss_pred HhheEeeccCeEEEEEEEEEcccceEEEccCCCEEEEEeccCCcccEEEECCC
Confidence 99999999999999999999999999999999999999999999999999974
No 4
>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=1.2e-42 Score=267.77 Aligned_cols=127 Identities=52% Similarity=0.899 Sum_probs=111.3
Q ss_pred CceeccceeeEcCCCcEEEEeCcEEEEEcCCcEEEEEeeCCcEEEEEeecccCCccE---EEEEecCCChhhhhhhHhHH
Q 032626 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRK---LKIDAWFGSRKTSAAIRTAL 77 (137)
Q Consensus 1 mk~~lg~~pI~IP~gV~Vti~~~~v~VkGp~G~l~~~l~~~~v~i~~~~~~~~~~~~---l~i~~~~~~k~~~a~~GT~r 77 (137)
||.++.++||+||+||+|+++++.|+|+||+|+|+++|+|..+++.+ ++ +. +.+++|+++++++|+|||+|
T Consensus 1 Mk~~~~k~pI~IP~gV~V~i~~~~VtVkGpkG~L~~~~~~~~v~i~~--~~----~~~~~i~v~~~~~~k~~~a~~Gt~r 74 (192)
T 2zkr_e 1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSL--LG----KKKKRLRVDKWWGNRKELATVRTIC 74 (192)
T ss_dssp ---------CCCCTTCEEEEETTEEEEEETTEEEEEECCSSSCEEEE--ET----TTTCEEEEECSCCCHHHHHHHHHHH
T ss_pred CCcccccCcEEcCCCCEEEEeCCEEEEECCCeEEEEEeCCCCEEEEE--ec----CceeEEEEEcCCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999954788875 44 56 99999999999999999999
Q ss_pred HHHhhceeeeccceEEEEEEEeeeeeeeEEECCCCceEEEeecCCCceeeEEeccc
Q 032626 78 SHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVPFFNSIS 133 (137)
Q Consensus 78 sli~NmI~GVt~Gf~~~L~lvg~gf~~~~~v~~~g~~v~i~nflgek~~r~~~~~~ 133 (137)
|||+|||+|||+||+|+|+++|+|||++++++++|+.|+++||||+++|+.+.||.
T Consensus 75 sli~NmI~GVt~Gf~~~L~lvGvGyra~v~~e~~g~~l~l~N~LG~Sh~v~~~iP~ 130 (192)
T 2zkr_e 75 SHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRP 130 (192)
T ss_dssp HHHHHHHHHHHTCEEEEEEEECSSSCCEEEECTTCSEEEEESGGGCSSCEEEECCS
T ss_pred HHHhCEEEeeccCcEEEEEEEEecceeEEEEccCCCEEEEeCcCCCcccEEeeCCC
Confidence 99999999999999999999999999999898899999999999999999999984
No 5
>3j21_F 50S ribosomal protein L6P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.2e-41 Score=260.61 Aligned_cols=122 Identities=34% Similarity=0.629 Sum_probs=114.4
Q ss_pred eccceeeEcCCCcEEEEeCcEEEEEcCCcEEEEEeeCCcEEEEEeecccCCccEEEEEecCCChhhhhhhHhHHHHHhhc
Q 032626 4 ILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNL 83 (137)
Q Consensus 4 ~lg~~pI~IP~gV~Vti~~~~v~VkGp~G~l~~~l~~~~v~i~~~~~~~~~~~~l~i~~~~~~k~~~a~~GT~rsli~Nm 83 (137)
..-++||+||+||+|+++++.|+||||+|+|+++|+|+++++++ ++ +++.++.|+++++++|+|||+||||+||
T Consensus 5 ~~~~~~I~IP~gV~v~i~~~~V~VkGpkG~L~~~~~~~~v~i~~--~~----~~l~v~~~~~~kk~~a~~gt~rsli~Nm 78 (184)
T 3j21_F 5 AWIREEVEIPEGVEVTVEGYKVKVKGPKGELEREFFWPGIQIFT--ED----GNVVIYKDFPRRKDVAIARTFAAHIRNM 78 (184)
T ss_dssp SSCEEEEECCSSCEEEESSSEEEEECSSCEEEEECCCTTCEEEE--ET----TEEEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred hheeEEEeCCCCcEEEEeCCEEEEEcCCeEEEEEecCCcEEEEE--eC----CEEEEEECCCCHHHHHHHHHHHHHHHhh
Confidence 34578999999999999999999999999999999878888886 44 7899999999999999999999999999
Q ss_pred eeeeccceEEEEEEEeeeeeeeEEECCCCceEEEeecCCCceeeEEeccc
Q 032626 84 ITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVPFFNSIS 133 (137)
Q Consensus 84 I~GVt~Gf~~~L~lvg~gf~~~~~v~~~g~~v~i~nflgek~~r~~~~~~ 133 (137)
|+|||+||+|+|+++|+||||++.++ |+.|+++||||+++|+.++|+.
T Consensus 79 I~GVt~Gf~~kL~lvgvgypira~~~--g~~l~l~n~LG~sh~v~~~ip~ 126 (184)
T 3j21_F 79 IKGVTEGFTYKLKVVYSHFPISVKVQ--GDEVIIENFLGEKAPRKAKILP 126 (184)
T ss_dssp HHHHHTCEEEEEEEECSSSCCEEEEE--TTEEEEECGGGCSSCEEEECCT
T ss_pred heeeccCeEEEEEEEEecccceEEEc--CCEEEEEecCCccccEEEECCC
Confidence 99999999999999999999999987 7899999999999999999974
No 6
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ...
Probab=100.00 E-value=9.3e-41 Score=254.51 Aligned_cols=119 Identities=30% Similarity=0.500 Sum_probs=111.6
Q ss_pred ceeeEcCCCcEEEEeCcEEEEEcCCcEEEEEeeCCcEEEEEeecccCCccEEEEEecCCChhhhhhhHhHHHHHhhceee
Q 032626 7 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITG 86 (137)
Q Consensus 7 ~~pI~IP~gV~Vti~~~~v~VkGp~G~l~~~l~~~~v~i~~~~~~~~~~~~l~i~~~~~~k~~~a~~GT~rsli~NmI~G 86 (137)
++||+||+||+|+++++.|+|+||+|+|+++|+|.++++.+ ++ +++.+++|+++++++|+|||+||||+|||+|
T Consensus 3 ~~pI~IP~gV~v~i~~~~vtVkGpkG~L~~~~~~~~v~i~~--~~----~~i~v~~~~~~k~~~a~~Gt~rsli~Nmi~G 76 (178)
T 1vq8_E 3 RVELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSV--DG----DTVVIESDEDNAKTMSTIGTFQSHIENMFHG 76 (178)
T ss_dssp EEEEECCTTCEEEEETTEEEEEETTEEEEEECCCTTCEEEE--ET----TEEEEECSCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred cccEEcCCCCEEEEeCCEEEEECCCeEEEEEEECCeEEEEE--EC----CEEEEEcCCCCHHHHHHHHHHHHHHcCEEEE
Confidence 57999999999999999999999999999999657888886 44 7899999999999999999999999999999
Q ss_pred eccceEEEEEEEeeeeeeeEEECCCCceEEEeecCCCceeeEEeccc
Q 032626 87 VTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVPFFNSIS 133 (137)
Q Consensus 87 Vt~Gf~~~L~lvg~gf~~~~~v~~~g~~v~i~nflgek~~r~~~~~~ 133 (137)
||+||+|+|+++|+||||+++++ |+.|+++||||+++|+.++||.
T Consensus 77 Vt~Gf~~~L~ivGvGypira~~~--g~~l~l~N~LG~shpv~~~ip~ 121 (178)
T 1vq8_E 77 VTEGWEYGMEVFYSHFPMQVNVE--GDEVVIENFLGEKAPRRTTIHG 121 (178)
T ss_dssp HHTCEEEEEEEECSSSCCEEEEE--TTEEEEESGGGCSSCEEEECCT
T ss_pred EccCeEEEEEEEeeCCceEEEEc--CCEEEEEccccccccEEEeCCC
Confidence 99999999999999999999887 6689999999999999999984
No 7
>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ...
Probab=100.00 E-value=6.6e-40 Score=250.29 Aligned_cols=119 Identities=16% Similarity=0.313 Sum_probs=110.7
Q ss_pred ceeccceeeEcCCCcEEEEeCcEEEEEcCCcEEEEEeeCCcEEEEEeecccCCccEEEEEecCCChhhhhhhHhHHHHHh
Q 032626 2 KTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVG 81 (137)
Q Consensus 2 k~~lg~~pI~IP~gV~Vti~~~~v~VkGp~G~l~~~l~~~~v~i~~~~~~~~~~~~l~i~~~~~~k~~~a~~GT~rsli~ 81 (137)
+||+|++||+||+||+|+++++.|+|+||+|+|+++|+| .|++.+ ++ +.+.++.|+++++++|+|||+||||+
T Consensus 1 mSrigk~pI~IP~gV~v~i~~~~v~VkGpkG~L~~~~~~-~v~i~~--~~----~~l~v~~~~~~kk~~a~~gt~rsli~ 73 (180)
T 3v2d_H 1 MSRIGRLPIPVPKGVSVEVAPGRVKVKGPKGELEVPVSP-EMRVVV--EE----GVVRVERPSDERRHKSLHGLTRTLIA 73 (180)
T ss_dssp -CCTTTSCEECCTTCEEEEETTEEEEECSSCEEEEECCT-TSEEEE--ET----TEEEEECSCSCHHHHHHHHHHHHHHH
T ss_pred CCcccCceeeCCCCcEEEEeCCEEEEEeCCcEEEEEeCC-CEEEEE--EC----CEEEEEECCCcHHHHHHHHHHHHHHh
Confidence 589999999999999999999999999999999999995 888886 44 78999999999999999999999999
Q ss_pred hceeeeccceEEEEEEEeeeeeeeEEECCCCceEEEeecCCCceeeEEeccc
Q 032626 82 NLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVPFFNSIS 133 (137)
Q Consensus 82 NmI~GVt~Gf~~~L~lvg~gf~~~~~v~~~g~~v~i~nflgek~~r~~~~~~ 133 (137)
|||+|||+||+|+|+++|+|||+++ + |+.|++ |||+++|+.++|+.
T Consensus 74 NmI~GVt~Gf~~kL~lvgvgyra~~--~--g~~l~l--~LG~sh~v~~~ip~ 119 (180)
T 3v2d_H 74 NAVKGVSEGYSKELLIKGIGYRARL--V--GRALEL--TVGFSHPVVVEPPE 119 (180)
T ss_dssp HHHHHHHTCEEEEEEEESTTCEEEE--E--TTEEEE--ECSSSSCEEECCCT
T ss_pred hhEEeecCCcEEEEEEEEEeeEEEE--C--CCEEEE--EecCCeeEEEECCC
Confidence 9999999999999999999999765 4 788999 99999999999974
No 8
>3r8s_G 50S ribosomal protein L6; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_E 1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G* 2qao_G* 2qba_G* 2qbc_G* 2qbe_G 2qbg_G 2qbi_G* 2qbk_G* 2qov_G 2qox_G 2qoz_G* 2qp1_G* 2rdo_G 2vhm_G ...
Probab=100.00 E-value=1.2e-39 Score=248.05 Aligned_cols=118 Identities=23% Similarity=0.334 Sum_probs=109.1
Q ss_pred eeccceeeEcCCCcEEEEeCcEEEEEcCCcEEEEEeeCCcEEEEEeecccCCccEEEEEecCCChhhhhhhHhHHHHHhh
Q 032626 3 TILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGN 82 (137)
Q Consensus 3 ~~lg~~pI~IP~gV~Vti~~~~v~VkGp~G~l~~~l~~~~v~i~~~~~~~~~~~~l~i~~~~~~k~~~a~~GT~rsli~N 82 (137)
||+|++||+||+||+|+++++.|+|+||+|+|+++|+ ++|++++ ++ +.+.++.|+++++++|+|||+||||+|
T Consensus 1 Srigk~pI~IP~gV~v~i~~~~V~VkGpkG~L~~~~~-~~v~i~~--~~----~~l~v~~~~~~k~~~a~~gt~rsli~N 73 (176)
T 3r8s_G 1 SRVAKAPVVVPAGVDVKINGQVITIKGKNGELTRTLN-DAVEVKH--AD----NTLTFGPRDGYADGWAQAGTARALLNS 73 (176)
T ss_dssp CTTTTSCEECCTTCCCEESSSEEECCBTTBCCEEECC-SSCEEEE--ET----TEEEEECCTTCSSTHHHHHHHHHHHHH
T ss_pred CCccccceeCCCCcEEEEeCCEEEEEcCCEEEEEECC-CCEEEEE--eC----CEEEEEECCCcHHHHHHHHHHHHHHHh
Confidence 6899999999999999999999999999999999998 5888886 44 789999999999999999999999999
Q ss_pred ceeeeccceEEEEEEEeeeeeeeEEECCCCceEEEeecCCCceeeEEeccc
Q 032626 83 LITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVPFFNSIS 133 (137)
Q Consensus 83 mI~GVt~Gf~~~L~lvg~gf~~~~~v~~~g~~v~i~nflgek~~r~~~~~~ 133 (137)
||+|||+||+|+|+++|+|||+++ + |+.| ++|||+++|+.++|+.
T Consensus 74 mI~GVt~Gf~~kL~lvgvgyra~~--~--g~~l--~l~LG~sh~v~~~ip~ 118 (176)
T 3r8s_G 74 MVIGVTEGFTKKLQLVGVGYRAAV--K--GNVI--NLSLGFSHPVDHQLPA 118 (176)
T ss_dssp TTTHHHHCEEECEEEESTTCEEEC--S--SSEE--EEECSSSSCEEEECCT
T ss_pred HhhhcccCeEEEEEEeeeeeEEEe--C--CCEE--EEEecCCeeEEEECCC
Confidence 999999999999999999999765 4 6665 6899999999999974
No 9
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J
Probab=100.00 E-value=8e-39 Score=243.74 Aligned_cols=118 Identities=21% Similarity=0.410 Sum_probs=104.9
Q ss_pred eeccceeeEcCCCcEEEEeCcEEEEEcCCcEEEEEeeCCcEEEEEeecccCCccEEEEEecCCChhhhhhhHhHHHHHhh
Q 032626 3 TILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGN 82 (137)
Q Consensus 3 ~~lg~~pI~IP~gV~Vti~~~~v~VkGp~G~l~~~l~~~~v~i~~~~~~~~~~~~l~i~~~~~~k~~~a~~GT~rsli~N 82 (137)
||+|++||+||+||+|+++++.|+|+||+|+|+++|+ +++++.+ ++ +.+.+++|+++++++|+|||+||||+|
T Consensus 1 srigk~pI~IP~gV~V~i~~~~VtVkGpkG~L~~~~~-~~v~i~~--~~----~~l~v~~~~~~k~~~a~~Gt~rsli~N 73 (177)
T 1rl6_A 1 SRVGKKPIEIPAGVTVTVNGNTVTVKGPKGELTRTFH-PDMTITV--EG----NVITVTRPSDEKHHRALHGTTRSLLAN 73 (177)
T ss_dssp ------CEECCTTCEEEEETTEEEEEETTEEEEEECC-TTCEEEE--ET----TEEEEECSCCSHHHHHHHHHHHHHHHH
T ss_pred CcccccceEcCCCCEEEEeCCEEEEECCCeEEEEEcC-CCEEEEE--eC----CEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 6899999999999999999999999999999999998 5888885 54 789999999999999999999999999
Q ss_pred ceeeeccceEEEEEEEeeeeeeeEEECCCCceEEEeecCCCceeeEEeccc
Q 032626 83 LITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVPFFNSIS 133 (137)
Q Consensus 83 mI~GVt~Gf~~~L~lvg~gf~~~~~v~~~g~~v~i~nflgek~~r~~~~~~ 133 (137)
||+|||+||+|+|+++|+|||+++ + |+.|++ |||+++|+.+.||.
T Consensus 74 mi~GVt~Gf~~~L~lvGvGyra~~--~--G~~l~l--~LG~Shpv~~~iP~ 118 (177)
T 1rl6_A 74 MVEGVSKGYEKALELVGVGYRASK--Q--GKKLVL--SVGYSHPVEIEPEE 118 (177)
T ss_dssp HHHHHHTCEEEEEEEESTTCEEEE--E--TTEEEE--ESSSSSCEEECCCT
T ss_pred EEEeEcCCcEEEEEEEeeceEEEe--c--CCEEEE--EecCCccEEEeCCC
Confidence 999999999999999999999775 3 788999 99999999999984
No 10
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E*
Probab=100.00 E-value=4.9e-38 Score=244.85 Aligned_cols=119 Identities=22% Similarity=0.384 Sum_probs=110.6
Q ss_pred ceeccceeeEcCCCcEEEEeCcEEEEEcCCcEEEEEeeCCcEEEEEeecccCCccEEEEEecCCChhhhhhhHhHHHHHh
Q 032626 2 KTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVG 81 (137)
Q Consensus 2 k~~lg~~pI~IP~gV~Vti~~~~v~VkGp~G~l~~~l~~~~v~i~~~~~~~~~~~~l~i~~~~~~k~~~a~~GT~rsli~ 81 (137)
++++|++||+||+||+|+++++.|+|+||+|+|+++|+ +++++.+ ++ +.+.+++|+++++++|+|||+||||+
T Consensus 28 MSRIgk~pI~IP~gV~V~i~~~~VtVKGPkG~L~~~~~-~~v~i~~--e~----~~i~v~~~~~~k~~ra~~Gt~rslI~ 100 (212)
T 1nkw_E 28 MSRIGKQPIAVPSGVTVNAQDGVFKVKGPKGELTVPYN-TELTVRQ--DG----DQLLVERPSDAQKHRALHGLTRTLVA 100 (212)
T ss_pred cccccccceecCCCcEEEEeCCEEEEECCCEEEEEECC-CCeEEEE--EC----CEEEEEcCCCCHHHHHHHHHHHHHhh
Confidence 57789999999999999999999999999999999998 5888875 55 78999999999999999999999999
Q ss_pred hceeeeccceEEEEEEEeeeeeeeEEECCCCceEEEeecCCCceeeEEeccc
Q 032626 82 NLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVPFFNSIS 133 (137)
Q Consensus 82 NmI~GVt~Gf~~~L~lvg~gf~~~~~v~~~g~~v~i~nflgek~~r~~~~~~ 133 (137)
|||+|||+||+|+|+++|+|||+++ +|+.|++ |||+++|+.+.|+.
T Consensus 101 NMI~GVt~Gf~kkLelvGvGYra~~----~G~~L~L--~LG~SHpv~~~iP~ 146 (212)
T 1nkw_E 101 NAVKGVSDGYTINLELRGVGFRAKL----TGKALEM--NIGYSHPVIIEPPA 146 (212)
T ss_pred CEEEeeccCeEEEEEEeeeeeEEEc----CCCEEEE--EccCCccEEEECCC
Confidence 9999999999999999999999774 3888999 99999999999984
No 11
>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=2.4e-38 Score=248.26 Aligned_cols=120 Identities=16% Similarity=0.328 Sum_probs=111.6
Q ss_pred CceeccceeeEcCCCcEEEEeCcEEEEEcCCcEEEEEeeCCcEEE-EEeecccCCccEEEEEecCCChhhhhhhHhHHHH
Q 032626 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDF-HLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSH 79 (137)
Q Consensus 1 mk~~lg~~pI~IP~gV~Vti~~~~v~VkGp~G~l~~~l~~~~v~i-~~~~~~~~~~~~l~i~~~~~~k~~~a~~GT~rsl 79 (137)
++||+|++||+||+||+|+++++.|+|+||+|+|+++|+ ++|++ .+ ++ +.+.+++|+++++++|+|||+|||
T Consensus 42 ~mSrigk~pI~IP~gV~V~i~~~~VtVKGPkG~L~~~~~-~~v~i~~~--e~----~~i~v~~~~~~k~~~a~~Gt~rsl 114 (223)
T 3bbo_I 42 KESRIGKQPIAVPSNVTIALEGQDLKVKGPLGELALTYP-REVELTKE--ES----GFLRVKKTVETRRANQMHGLFRTL 114 (223)
T ss_dssp CCCCCCCCCCCCSTTSCEEESSSEEEECCSSCCEEEECC-SSCEEEEC--SS----SCEEEECSSCCTTHHHHHHHHTTT
T ss_pred ccccccccceecCCCCEEEEeCCEEEEECCCeEEEEEcC-CCEEEEEe--cC----CEEEEEcCCCcHHHHHHHHHHHHH
Confidence 369999999999999999999999999999999999998 58888 64 55 789999999999999999999999
Q ss_pred HhhceeeeccceEEEEEEEeeeeeeeEEECCCCceEEEeecCCCceeeEEeccc
Q 032626 80 VGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVPFFNSIS 133 (137)
Q Consensus 80 i~NmI~GVt~Gf~~~L~lvg~gf~~~~~v~~~g~~v~i~nflgek~~r~~~~~~ 133 (137)
|+|||+|||+||+|+|+++|+|||+++ +|+.|++ |||+++|+.++||.
T Consensus 115 I~NMI~GVt~Gf~kkLelvGvGYra~~----~G~~L~L--~LG~SHpv~~~iP~ 162 (223)
T 3bbo_I 115 TDNMVVGVSKGFEKKLILVGVGYRATV----DGKELVL--NLGFSHPVKMQIPD 162 (223)
T ss_dssp TTHHHHHTTTCEEECEECCSTTCCEEE----CSSEEEE--CSSCSSCEEEECCS
T ss_pred hhcEEEeeccCcEEEEEEeeeceEEEe----cCCEEEE--EeeCCccEEEECCC
Confidence 999999999999999999999999775 3788999 99999999999984
No 12
>2zjr_E 50S ribosomal protein L6; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.141.1.1 d.141.1.1 PDB: 1nwx_E* 1xbp_E* 2zjp_E* 2zjq_E 1nwy_E 3cf5_E* 3dll_E* 3pio_E* 3pip_E* 1pnu_E 1pny_E 1vor_H 1vou_H 1vow_H 1voy_H 1vp0_H
Probab=100.00 E-value=3e-39 Score=247.50 Aligned_cols=119 Identities=22% Similarity=0.384 Sum_probs=106.8
Q ss_pred ceeccceeeEcCCCcEEEEeCcEEEEEcCCcEEEEEeeCCcEEEEEeecccCCccEEEEEecCCChhhhhhhHhHHHHHh
Q 032626 2 KTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVG 81 (137)
Q Consensus 2 k~~lg~~pI~IP~gV~Vti~~~~v~VkGp~G~l~~~l~~~~v~i~~~~~~~~~~~~l~i~~~~~~k~~~a~~GT~rsli~ 81 (137)
+||+|++||+||+||+|+++++.|+|+||+|+|+++|+ +++++.+ ++ +.+.+++|+++++++|+|||+||||+
T Consensus 1 mSrigk~pI~IP~gV~V~i~~~~VtVkGpkG~L~~~~~-~~v~i~~--~~----~~i~v~~~~~~k~~~a~~Gt~rslI~ 73 (185)
T 2zjr_E 1 MSRIGKQPIAVPSGVTVNAQDGVFKVKGPKGELTVPYN-TELTVRQ--DG----DQLLVERPSDAQKHRALHGLTRTLVA 73 (185)
T ss_dssp ----CCCCBCCCTTCCEECCTTCCEECCSSCCCCCCCC-SSSCCBC--CS----SSBBCCCSSCSSHHHHHHHHHHHHHH
T ss_pred CCcccccceecCCCCEEEEeCCEEEEECCCeEEEEEcC-CCEEEEE--eC----CEEEEECCCCCHHHHHHHHHHHHHhh
Confidence 58999999999999999999999999999999999998 5777774 54 68999999999999999999999999
Q ss_pred hceeeeccceEEEEEEEeeeeeeeEEECCCCceEEEeecCCCceeeEEeccc
Q 032626 82 NLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVPFFNSIS 133 (137)
Q Consensus 82 NmI~GVt~Gf~~~L~lvg~gf~~~~~v~~~g~~v~i~nflgek~~r~~~~~~ 133 (137)
|||+|||+||+|+|+++|+|||+++ +|+.|++ |||+++|+.+.||.
T Consensus 74 NmI~GVt~Gf~kkL~lvGvGYra~~----~G~~l~l--~LG~Shpv~~~iP~ 119 (185)
T 2zjr_E 74 NAVKGVSDGYTINLELRGVGFRAKL----TGKALEM--NIGYSHPVIIEPPA 119 (185)
T ss_dssp HHHHHHHHCEEEEEECBSTTCCCCC----BTTBCBC--CSSCSSCCBCCCCT
T ss_pred cEEeeeccCcEEEEEEeeeccEEEE----cCCEEEE--EeeCCccEEEECCC
Confidence 9999999999999999999999885 3788888 99999999999874
No 13
>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.141.1.1
Probab=99.97 E-value=3.6e-32 Score=190.08 Aligned_cols=91 Identities=46% Similarity=0.861 Sum_probs=80.1
Q ss_pred CceeccceeeEcCCCcEEEEeCcEEEEEcCCcEEEEEeeCCcEEEEEeecccCCccEEEEEecCCChhhhhhhHhHHHHH
Q 032626 1 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHV 80 (137)
Q Consensus 1 mk~~lg~~pI~IP~gV~Vti~~~~v~VkGp~G~l~~~l~~~~v~i~~~~~~~~~~~~l~i~~~~~~k~~~a~~GT~rsli 80 (137)
||.+..++||+||+||+|+++++.|+||||+|+|+++|+|++|+++++.+. .+.+.+++|+++++++|+|||+||||
T Consensus 8 Mk~i~~k~pI~IP~gV~V~i~~~~VtVKGPkG~L~~~~~h~~v~i~~e~~~---~~~i~v~~~~~~k~~ra~~Gt~RslI 84 (100)
T 2cql_A 8 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRVDKWWGNRKELATVRTICSHV 84 (100)
T ss_dssp CCCCCCCEEECCCSSCEEEEETTEEEEEETTEEEEEECCSSCCEEEEECSS---SCEEEEECCSSSTHHHHHHHHHHHHH
T ss_pred cccccccCcEEcCCCCEEEEeCCEEEEECCCceEEEEeccCcEEEEEcCCc---eeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 555666999999999999999999999999999999999888998863211 02499999999999999999999999
Q ss_pred hhceeeeccceEEE
Q 032626 81 GNLITGVTKGYRYK 94 (137)
Q Consensus 81 ~NmI~GVt~Gf~~~ 94 (137)
+|||+|||+||+|.
T Consensus 85 ~NMI~GVt~Gf~y~ 98 (100)
T 2cql_A 85 QNMIKGVTLGSGPS 98 (100)
T ss_dssp HHHHHHHHTSCCSC
T ss_pred HhhhEeecCCEEEc
Confidence 99999999999974
No 14
>3j21_F 50S ribosomal protein L6P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=71.80 E-value=3.5 Score=30.74 Aligned_cols=22 Identities=41% Similarity=0.501 Sum_probs=15.9
Q ss_pred eEcCCCcEEEEeCcEEEEEcCC
Q 032626 10 MDIPDGVKVKINAKVIEVEGPR 31 (137)
Q Consensus 10 I~IP~gV~Vti~~~~v~VkGp~ 31 (137)
+.+|+||++++.++.+.++|..
T Consensus 122 ~~ip~gv~v~v~~~~Iil~G~D 143 (184)
T 3j21_F 122 AKILPGVTVKVRGQEIIVEGID 143 (184)
T ss_dssp EECCTTEEEEEETTEEEEEESC
T ss_pred EECCCCeEEEecCCEEEEEECC
Confidence 4678888888776666666654
No 15
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ...
Probab=71.24 E-value=3.8 Score=30.47 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=18.3
Q ss_pred eeEcCCCcEEEEeCcEEEEEcCC
Q 032626 9 TMDIPDGVKVKINAKVIEVEGPR 31 (137)
Q Consensus 9 pI~IP~gV~Vti~~~~v~VkGp~ 31 (137)
.+++|+||++++.++.+.++|..
T Consensus 116 ~~~ip~gi~v~v~~~~I~v~G~D 138 (178)
T 1vq8_E 116 RTTIHGDTDVEIDGEELTVSGPD 138 (178)
T ss_dssp EEECCTTCEEEEETTEEEEEESC
T ss_pred EEeCCCCeEEEEeCCEEEEEECC
Confidence 45789999999887777777764
No 16
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}
Probab=66.54 E-value=14 Score=24.13 Aligned_cols=45 Identities=16% Similarity=0.175 Sum_probs=30.2
Q ss_pred CCCcEEEEeCcEEEEEcCC-------------cEEEEEeeCC-c-----EEEEEeecccCCccEEEEEec
Q 032626 13 PDGVKVKINAKVIEVEGPR-------------GKLSRDFKHL-N-----LDFHLMTDEETGKRKLKIDAW 63 (137)
Q Consensus 13 P~gV~Vti~~~~v~VkGp~-------------G~l~~~l~~~-~-----v~i~~~~~~~~~~~~l~i~~~ 63 (137)
|+.++|+++++.|+|+|-+ |+..+.|.-+ . ++..+ ++ +.|.|...
T Consensus 29 ~edi~v~~~~~~L~I~g~~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~i~A~~--~~----GvL~I~lp 92 (102)
T 4fei_A 29 AGTLALAEDGGQLTVSGERPGTEHLLRSERPSGRFVRELAFPEPVRPASGVASL--AG----GVLTVRFE 92 (102)
T ss_dssp GGGCEEEEETTEEEEEEEECCCSSCSSCCSEEEEEEEEEECSSCBCTTCCEEEE--ET----TEEEEEEE
T ss_pred hHhEEEEEECCEEEEEEEEecCCCEEEEEEeccEEEEEEECCCCcchhHcEEEE--EC----CEEEEEEE
Confidence 3789999999999999854 5565554422 2 33443 33 67888765
No 17
>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F 1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 4b6a_H 3jyw_H
Probab=65.47 E-value=5.4 Score=29.90 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=14.9
Q ss_pred eEcCCCcEEEEeC---cEEEEEcCC
Q 032626 10 MDIPDGVKVKINA---KVIEVEGPR 31 (137)
Q Consensus 10 I~IP~gV~Vti~~---~~v~VkGp~ 31 (137)
+.+|+||++++.+ +.+.++|..
T Consensus 126 ~~ip~Gv~v~v~~~~kteIil~G~D 150 (191)
T 3u5e_H 126 VPVRDGVTIEFSTNVKDEIVLSGNS 150 (191)
T ss_dssp EECCTTEEEEECTTSTTEEEEEESC
T ss_pred EECCCCEEEEECCCCCCEEEEEECC
Confidence 4677888887766 566666654
No 18
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Probab=64.95 E-value=23 Score=22.66 Aligned_cols=18 Identities=17% Similarity=0.652 Sum_probs=16.1
Q ss_pred CCCcEEEEeCcEEEEEcC
Q 032626 13 PDGVKVKINAKVIEVEGP 30 (137)
Q Consensus 13 P~gV~Vti~~~~v~VkGp 30 (137)
|++++|+++++.|+|+|.
T Consensus 27 ~edi~v~~~~~~L~I~g~ 44 (100)
T 3gla_A 27 PSQIEVQMDKGILSIRGE 44 (100)
T ss_dssp GGGCEEEEETTEEEEEEE
T ss_pred HHHEEEEEECCEEEEEEE
Confidence 478999999999999984
No 19
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Probab=60.92 E-value=5.4 Score=25.40 Aligned_cols=19 Identities=37% Similarity=0.676 Sum_probs=16.7
Q ss_pred CCCcEEEEeCcEEEEEcCC
Q 032626 13 PDGVKVKINAKVIEVEGPR 31 (137)
Q Consensus 13 P~gV~Vti~~~~v~VkGp~ 31 (137)
|+.++|+++++.|+|+|-+
T Consensus 20 ~edi~V~v~~~~L~I~g~~ 38 (85)
T 3q9p_A 20 PDELTVKTKDGVVEITGKH 38 (85)
T ss_dssp CSEEEEEEETTEEEEEEEE
T ss_pred hHHEEEEEECCEEEEEEEE
Confidence 5899999999999999864
No 20
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A
Probab=60.79 E-value=30 Score=24.38 Aligned_cols=19 Identities=11% Similarity=0.322 Sum_probs=16.5
Q ss_pred CCCcEEEEeCcEEEEEcCC
Q 032626 13 PDGVKVKINAKVIEVEGPR 31 (137)
Q Consensus 13 P~gV~Vti~~~~v~VkGp~ 31 (137)
|+.|+|+++++.|+|+|.+
T Consensus 79 ~edi~V~~~~~~L~I~g~~ 97 (161)
T 4eld_A 79 KEDIILNAVGDTLEIRAKR 97 (161)
T ss_dssp GGGEEEEEETTEEEEEEEC
T ss_pred hHhEEEEEECCEEEEEEEE
Confidence 3799999999999999843
No 21
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J
Probab=59.84 E-value=6.3 Score=29.14 Aligned_cols=24 Identities=17% Similarity=0.461 Sum_probs=17.0
Q ss_pred eeEcCCCcEEEEeCc-EEEEEcCCc
Q 032626 9 TMDIPDGVKVKINAK-VIEVEGPRG 32 (137)
Q Consensus 9 pI~IP~gV~Vti~~~-~v~VkGp~G 32 (137)
.+.||+||++++.++ .|.++|..=
T Consensus 113 ~~~iP~gi~v~v~~~t~I~v~G~Dk 137 (177)
T 1rl6_A 113 EIEPEEGLEIEVPSQTKIIVKGADK 137 (177)
T ss_dssp EECCCTTEEEEEEETTEEEEEESCH
T ss_pred EEeCCCCcEEEECCCCEEEEEeCCH
Confidence 457788888887654 677777653
No 22
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E*
Probab=59.59 E-value=7.2 Score=29.76 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=20.6
Q ss_pred eeEcCCCcEEEEeCc-EEEEEcCCcEE
Q 032626 9 TMDIPDGVKVKINAK-VIEVEGPRGKL 34 (137)
Q Consensus 9 pI~IP~gV~Vti~~~-~v~VkGp~G~l 34 (137)
.+.||+||++++.++ .|.++|..=++
T Consensus 141 ~~~iP~GI~v~v~~~t~Iiv~GiDKq~ 167 (212)
T 1nkw_E 141 IIEPPAGVTFAVPEPTRIDVSGIDKQL 167 (212)
T ss_pred EEECCCCeEEEeCCCCEEEEEeCCHHH
Confidence 458899999998865 78899887544
No 23
>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=59.55 E-value=7.8 Score=28.98 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=15.0
Q ss_pred eeEcCCCcEEEEeC---cEEEEEcCC
Q 032626 9 TMDIPDGVKVKINA---KVIEVEGPR 31 (137)
Q Consensus 9 pI~IP~gV~Vti~~---~~v~VkGp~ 31 (137)
.+.||+||++++.+ +.+.++|..
T Consensus 125 ~~~iP~gv~v~v~~~~~t~I~v~GiD 150 (192)
T 2zkr_e 125 RVRMRPGVACSVSQAQKDELILEGND 150 (192)
T ss_dssp EEECCSSCEEEECSSCSSEEEEEESC
T ss_pred EeeCCCCeEEEEcCCCCCEEEEEeCC
Confidence 45778888887764 356666654
No 24
>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_E 4a1c_E 4a1e_E
Probab=59.14 E-value=6.6 Score=29.34 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=12.7
Q ss_pred EcCCCcEEEEeC---cEEEEEcCC
Q 032626 11 DIPDGVKVKINA---KVIEVEGPR 31 (137)
Q Consensus 11 ~IP~gV~Vti~~---~~v~VkGp~ 31 (137)
.+|+||++++.+ +.+.++|..
T Consensus 125 ~ip~gv~v~v~~~~k~eIil~G~D 148 (188)
T 4a17_E 125 QALPGVKISRKDEEKNTLTLQGID 148 (188)
T ss_dssp ECCTTCEEECCTTSSSEEEEEESC
T ss_pred ECCCCeEEEECCCCCCEEEEEEcC
Confidence 567777777655 345555544
No 25
>2zjr_E 50S ribosomal protein L6; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.141.1.1 d.141.1.1 PDB: 1nwx_E* 1xbp_E* 2zjp_E* 2zjq_E 1nwy_E 3cf5_E* 3dll_E* 3pio_E* 3pip_E* 1pnu_E 1pny_E 1vor_H 1vou_H 1vow_H 1voy_H 1vp0_H
Probab=55.06 E-value=6.2 Score=29.43 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=18.5
Q ss_pred eeEcCCCcEEEEeCc-EEEEEcCCcE
Q 032626 9 TMDIPDGVKVKINAK-VIEVEGPRGK 33 (137)
Q Consensus 9 pI~IP~gV~Vti~~~-~v~VkGp~G~ 33 (137)
.+.||+||++++.++ .|.++|..=+
T Consensus 114 ~~~iP~gI~v~v~~~t~I~l~G~DKq 139 (185)
T 2zjr_E 114 IIEPPAGVTFAVPEPTRIDVSGIDKQ 139 (185)
T ss_dssp BCCCCTTEEEECSSTTEEEEEESSHH
T ss_pred EEECCCCeEEEECCCCEEEEEecCHH
Confidence 457899999998764 7788776533
No 26
>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ...
Probab=54.18 E-value=8 Score=28.63 Aligned_cols=24 Identities=17% Similarity=0.472 Sum_probs=16.6
Q ss_pred eEcCCCcEEEEeCc-EEEEEcCCcE
Q 032626 10 MDIPDGVKVKINAK-VIEVEGPRGK 33 (137)
Q Consensus 10 I~IP~gV~Vti~~~-~v~VkGp~G~ 33 (137)
+.||+||++++.+. .|.++|..=+
T Consensus 115 ~~ip~gv~v~v~~~t~Iil~G~Dke 139 (180)
T 3v2d_H 115 VEPPEGITFEVPEPTRVRVSGIDKQ 139 (180)
T ss_dssp ECCCTTCEEECSSTTEEEEEESCHH
T ss_pred EECCCCeEEEECCCCEEEEEECcHH
Confidence 46788888887764 6777776533
No 27
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}
Probab=53.22 E-value=44 Score=26.58 Aligned_cols=47 Identities=15% Similarity=0.263 Sum_probs=31.1
Q ss_pred CCCcEEEEeCcEEEEEcCC----------cEEEEEeeC-Cc-----EEEEEeecccCCccEEEEEecC
Q 032626 13 PDGVKVKINAKVIEVEGPR----------GKLSRDFKH-LN-----LDFHLMTDEETGKRKLKIDAWF 64 (137)
Q Consensus 13 P~gV~Vti~~~~v~VkGp~----------G~l~~~l~~-~~-----v~i~~~~~~~~~~~~l~i~~~~ 64 (137)
|+.++|+++++.|+|+|-+ |+-++.|.- .. ++..+ ..+ |.|.|+...
T Consensus 125 ~edI~V~v~~~~L~I~ge~~~~~e~~r~~g~F~R~~~LP~~Vd~e~i~A~~-~~n----GVL~I~lPK 187 (314)
T 2bol_A 125 AEEITIKADKNKLVVRAQKSVACGDAAMSESVGRSIPLPPSVDRNHIQATI-TTD----DVLVIEAPV 187 (314)
T ss_dssp TTTEEEEEETTEEEEEECCBSSTTCCCBCCCEEEEEECCTTBCGGGCEEEE-CSS----SEEEEEEEB
T ss_pred hHHeEEEEECCEEEEEEEEeccCCCCEEEEEEEEEEECCCCccccccEEEE-eCC----CEEEEEEec
Confidence 5899999999999999976 455554442 12 34444 214 778887653
No 28
>3r8s_G 50S ribosomal protein L6; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_E 1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G* 2qao_G* 2qba_G* 2qbc_G* 2qbe_G 2qbg_G 2qbi_G* 2qbk_G* 2qov_G 2qox_G 2qoz_G* 2qp1_G* 2rdo_G 2vhm_G ...
Probab=53.01 E-value=11 Score=27.71 Aligned_cols=23 Identities=17% Similarity=0.426 Sum_probs=15.2
Q ss_pred eeEcCCCcEEEEeC-cEEEEEcCC
Q 032626 9 TMDIPDGVKVKINA-KVIEVEGPR 31 (137)
Q Consensus 9 pI~IP~gV~Vti~~-~~v~VkGp~ 31 (137)
.+.||+||++++.+ +.|.++|..
T Consensus 113 ~~~ip~gv~v~v~~~t~Iil~G~D 136 (176)
T 3r8s_G 113 DHQLPAGITAECPTQTEIVLKGAD 136 (176)
T ss_dssp EEECCTTCEEEEEETTEEEEEESC
T ss_pred EEECCCCeEEEECCCCEEEEEECc
Confidence 34678888888754 456666654
No 29
>3iz5_F 60S ribosomal protein L9 (L6P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_F
Probab=52.97 E-value=12 Score=27.95 Aligned_cols=22 Identities=18% Similarity=0.428 Sum_probs=12.7
Q ss_pred eEcCCCcEEEEeC---cEEEEEcCC
Q 032626 10 MDIPDGVKVKINA---KVIEVEGPR 31 (137)
Q Consensus 10 I~IP~gV~Vti~~---~~v~VkGp~ 31 (137)
+.+|+||++++.. +.|.++|..
T Consensus 125 ~~ip~GV~v~v~~~~k~eIil~G~D 149 (190)
T 3iz5_F 125 VDMLEGVTILRSEKVKDELVLDGND 149 (190)
T ss_dssp EECCSSCEEEECCTTTCEEEEEESC
T ss_pred EECCCCeEEEEcCCCCCEEEEEECC
Confidence 3567777777654 245555544
No 30
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Probab=49.81 E-value=8.6 Score=24.60 Aligned_cols=20 Identities=45% Similarity=0.713 Sum_probs=17.1
Q ss_pred CCCcEEEEeCcEEEEEcCCc
Q 032626 13 PDGVKVKINAKVIEVEGPRG 32 (137)
Q Consensus 13 P~gV~Vti~~~~v~VkGp~G 32 (137)
|+.++|+++++.|+|+|...
T Consensus 19 ~edi~V~v~~~~L~I~g~~~ 38 (90)
T 2y1y_A 19 PEELKVKVLGDVIEVHGKHE 38 (90)
T ss_dssp GGGEEEEEETTEEEEEEEEE
T ss_pred HHHeEEEEECCEEEEEEEEe
Confidence 36899999999999999753
No 31
>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=49.33 E-value=7.3 Score=29.96 Aligned_cols=25 Identities=40% Similarity=0.615 Sum_probs=17.9
Q ss_pred eeEcCCCcEEEEeCc-EEEEEcCCcE
Q 032626 9 TMDIPDGVKVKINAK-VIEVEGPRGK 33 (137)
Q Consensus 9 pI~IP~gV~Vti~~~-~v~VkGp~G~ 33 (137)
.++||+||++++.++ .|.++|..=+
T Consensus 157 ~~~iP~GI~v~v~~~t~Iii~GiDKq 182 (223)
T 3bbo_I 157 KMQIPDSLKVKVEENTRITVSGYDKS 182 (223)
T ss_dssp EEECCSSEEEECSSTTBCEEEESSSH
T ss_pred EEECCCCeEEEeCCCCEEEEEeCCHH
Confidence 457889998888754 6777776533
No 32
>2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis}
Probab=47.69 E-value=7.8 Score=24.34 Aligned_cols=24 Identities=17% Similarity=0.472 Sum_probs=20.5
Q ss_pred CCcEEEEeCcEEEEEcCCcEEEEE
Q 032626 14 DGVKVKINAKVIEVEGPRGKLSRD 37 (137)
Q Consensus 14 ~gV~Vti~~~~v~VkGp~G~l~~~ 37 (137)
.||.+.++++.+.++.|+|.++-.
T Consensus 17 ~gi~l~~eg~kLr~~ap~g~l~~~ 40 (78)
T 2jug_A 17 LGVRLWVEGERLRFQAPPGVMTPE 40 (78)
T ss_dssp HTCEEEEETTEEEEECCTTTTCHH
T ss_pred cCCEEEEECCEeeeecCccccCHH
Confidence 488999999999999999987643
No 33
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Probab=46.40 E-value=10 Score=25.13 Aligned_cols=19 Identities=26% Similarity=0.704 Sum_probs=16.9
Q ss_pred CCCcEEEEeCcEEEEEcCC
Q 032626 13 PDGVKVKINAKVIEVEGPR 31 (137)
Q Consensus 13 P~gV~Vti~~~~v~VkGp~ 31 (137)
|+.++|+++++.|+|+|..
T Consensus 25 ~edi~V~v~~~~L~I~g~~ 43 (106)
T 3l1e_A 25 PEDLTVKVQEDFVEIHGKH 43 (106)
T ss_dssp GGGEEEEEETTEEEEEEEE
T ss_pred hHHEEEEEECCEEEEEEEE
Confidence 5799999999999999954
No 34
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus}
Probab=46.40 E-value=10 Score=24.85 Aligned_cols=20 Identities=25% Similarity=0.486 Sum_probs=17.4
Q ss_pred CCCcEEEEeCcEEEEEcCCc
Q 032626 13 PDGVKVKINAKVIEVEGPRG 32 (137)
Q Consensus 13 P~gV~Vti~~~~v~VkGp~G 32 (137)
|+.++|+++++.|+|+|-+.
T Consensus 24 ~edI~V~v~~~~L~I~g~~~ 43 (101)
T 2wj5_A 24 PEEISVKVVGDHVEVHARHE 43 (101)
T ss_dssp GGGEEEEEETTEEEEEEEEE
T ss_pred HHHeEEEEECCEEEEEEEEe
Confidence 47899999999999999764
No 35
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Probab=36.28 E-value=18 Score=24.31 Aligned_cols=19 Identities=16% Similarity=0.440 Sum_probs=16.9
Q ss_pred CCCcEEEEeC-cEEEEEcCC
Q 032626 13 PDGVKVKINA-KVIEVEGPR 31 (137)
Q Consensus 13 P~gV~Vti~~-~~v~VkGp~ 31 (137)
|+.++|++++ +.|+|+|.+
T Consensus 47 ~edi~V~v~~~~~L~I~g~~ 66 (123)
T 3aab_A 47 KEKIKARVSGQNELIIEAER 66 (123)
T ss_dssp GGGCEEEEETTTEEEEEEEC
T ss_pred HHHEEEEEeCCCEEEEEEEE
Confidence 4689999999 999999985
No 36
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A
Probab=36.14 E-value=17 Score=26.44 Aligned_cols=21 Identities=43% Similarity=0.699 Sum_probs=18.0
Q ss_pred CCCcEEEEeCcEEEEEcCCcE
Q 032626 13 PDGVKVKINAKVIEVEGPRGK 33 (137)
Q Consensus 13 P~gV~Vti~~~~v~VkGp~G~ 33 (137)
|+.++|+++++.|+|+|.+.+
T Consensus 86 ~edI~V~v~~~~L~I~g~~~~ 106 (175)
T 2klr_A 86 PEELKVKVLGDVIEVHGKHEE 106 (175)
T ss_dssp GGGEEEEEETTEEEEEEEEEE
T ss_pred hHHEEEEEECCEEEEEEEEcc
Confidence 478999999999999997643
No 37
>2lez_A Secreted effector protein PIPB2; structural genomics, northeast structural genomics consortiu bacterial effector, virulence factor; NMR {Salmonella enterica subsp}
Probab=34.99 E-value=1.1e+02 Score=21.98 Aligned_cols=66 Identities=5% Similarity=0.034 Sum_probs=40.5
Q ss_pred eeEcCCCcEE-EEeCcEEEEEcCCcEEEEEeeCCcEEEEEeecccCCccEEEEEecCCChhhhhhhHhHHHHHhhceeee
Q 032626 9 TMDIPDGVKV-KINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGV 87 (137)
Q Consensus 9 pI~IP~gV~V-ti~~~~v~VkGp~G~l~~~l~~~~v~i~~~~~~~~~~~~l~i~~~~~~k~~~a~~GT~rsli~NmI~GV 87 (137)
-..||+.+-+ +++|..|++.=|.-. . ++.+|.+++..++ ....-+.. ...+|.+.|.|.-.--.++
T Consensus 57 ~~~~pe~i~l~dinGc~V~Fs~p~~~---~-~~g~VtVEV~k~g----~t~t~eVd-----~~~F~~vcr~L~lr~~~nl 123 (145)
T 2lez_A 57 GAPLPENIILDDMDGCRVEFNLPGEN---N-EAGQVIVRVSKGD----HSETREIP-----LASFEKICRALLFRCEFSL 123 (145)
T ss_dssp SSCCCSEEEEEEETTEEEEEECCCTT---C-SSCEEEEEEEETT----EEEEEEEE-----HHHHHHHHHHHHHHHC---
T ss_pred CCCCcceEEEeccCCEEEEecCCCcc---c-cCCcEEEEEcCCC----ceeeeeec-----HHHHHHHHHHHHHHHhcCC
Confidence 4578999999 999999988755432 1 1135777774443 33222222 5678999998875544443
No 38
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=31.72 E-value=60 Score=27.86 Aligned_cols=29 Identities=21% Similarity=0.463 Sum_probs=18.3
Q ss_pred eeEcCCCcEEEEeCcEEEEEcCCcEEEEE
Q 032626 9 TMDIPDGVKVKINAKVIEVEGPRGKLSRD 37 (137)
Q Consensus 9 pI~IP~gV~Vti~~~~v~VkGp~G~l~~~ 37 (137)
.+.-|+||+|+++..+|+++.+.-++++.
T Consensus 558 ~v~~p~gv~v~V~P~~l~f~~~~~~~~~~ 586 (621)
T 3vta_A 558 MISAPQGLTISVNPNVLSFNGLGDRKSFT 586 (621)
T ss_dssp EEECCSSEEEEEESSEEEECSTTCEEEEE
T ss_pred EEECCCCcEEEEecCEEEEcCCCcEEEEE
Confidence 35567777777777777776555444443
No 39
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}
Probab=26.30 E-value=28 Score=27.77 Aligned_cols=20 Identities=35% Similarity=0.496 Sum_probs=17.5
Q ss_pred CCCcEEEEeCcEEEEEcCCc
Q 032626 13 PDGVKVKINAKVIEVEGPRG 32 (137)
Q Consensus 13 P~gV~Vti~~~~v~VkGp~G 32 (137)
|+.++|+++++.|+|+|-+.
T Consensus 247 ~edi~V~v~~~~LtI~ge~~ 266 (314)
T 2bol_A 247 PKDVKVWAKGNKVYVHGVTG 266 (314)
T ss_dssp GGGEEEEESSSEEEEEEEEC
T ss_pred hHHeEEEEECCEEEEEEEEe
Confidence 58899999999999999763
No 40
>3t0p_A DNA polymerase III, beta subunit; DNA clamp, structural genomics, joint center for structural JCSG, protein structure initiative; HET: DNA MSE; 2.26A {Eubacterium rectale}
Probab=25.08 E-value=94 Score=24.83 Aligned_cols=47 Identities=15% Similarity=0.207 Sum_probs=35.5
Q ss_pred ceeeEcCCCcEEEEeCcEEEEEcCCcEEEEEeeCCcEEEEEeecccCCccEEEEE
Q 032626 7 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKID 61 (137)
Q Consensus 7 ~~pI~IP~gV~Vti~~~~v~VkGp~G~l~~~l~~~~v~i~~~~~~~~~~~~l~i~ 61 (137)
+.+++|=+||-++.+++.|+++|-..++++... .+.++. +. +.+.+.
T Consensus 25 r~t~pIL~~ili~a~~~~L~ltatD~ei~i~~~-i~a~v~---~~----G~~~v~ 71 (371)
T 3t0p_A 25 RTTMAILECILIDASANEIKLMANDMELGIETI-IDGTIE---ER----GIIALD 71 (371)
T ss_dssp SCSSGGGGEEEEEESSSSEEEEEECSSEEEEEE-ECCEEE---EC----EEEEEE
T ss_pred CCChHHhCCEEEEEECCEEEEEEeCcEEEEEEE-EEEEEc---cC----eEEEEE
Confidence 455677799999999999999999999988865 344443 33 677775
No 41
>3kd4_A Putative protease; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 2.00A {Parabacteroides distasonis atcc 8503}
Probab=24.83 E-value=78 Score=26.45 Aligned_cols=34 Identities=21% Similarity=0.385 Sum_probs=28.2
Q ss_pred ceeeEcCCCcEEEEeCcEEEEEcCCcEEEEEeeC
Q 032626 7 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKH 40 (137)
Q Consensus 7 ~~pI~IP~gV~Vti~~~~v~VkGp~G~l~~~l~~ 40 (137)
...|.||+|-+|.-......+.-|-|+++..+..
T Consensus 428 ~~~i~~P~g~~v~~~p~~~~i~~~~g~~~~~~~~ 461 (506)
T 3kd4_A 428 TYTVTPAEGMKLQTSTQEQVISKPFGKVTRTITP 461 (506)
T ss_dssp EEEEEECTTCEECSCCSCEEEEETTEEEEEEEEE
T ss_pred EEEEECCCCCeeecCCcCeeecCCcEEEEEEEEe
Confidence 4568999999998666778889999999998874
No 42
>1vpz_A Carbon storage regulator homolog; CSRA-like fold, structural genomics, joint center for struct genomics, JCSG; HET: MSE; 2.05A {Pseudomonas aeruginosa} SCOP: b.151.1.1
Probab=24.43 E-value=1.3e+02 Score=18.95 Aligned_cols=39 Identities=23% Similarity=0.341 Sum_probs=28.6
Q ss_pred eeccceeeEcCCCcEEEEeCcEEEEEcCCcEEEEEeeCCcEEEE
Q 032626 3 TILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFH 46 (137)
Q Consensus 3 ~~lg~~pI~IP~gV~Vti~~~~v~VkGp~G~l~~~l~~~~v~i~ 46 (137)
+|--.+.|.|.++++|++ +.++|..=.|-++-| ..+.|.
T Consensus 17 tRK~GEsI~IGddI~ItV----l~i~g~qVrLGI~AP-k~V~I~ 55 (73)
T 1vpz_A 17 TRRVGETLMVGDDVTVTV----LGVKGNQVRIGVNAP-KEVAVH 55 (73)
T ss_dssp EEETTCEEEETTTEEEEE----EEEETTEEEEEEEEE-TTSCEE
T ss_pred EccCCCEEEeCCCEEEEE----EEEeCCEEEEEEECC-CCCeEe
Confidence 344456899999999997 668887777778877 456554
No 43
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=24.39 E-value=44 Score=19.92 Aligned_cols=18 Identities=22% Similarity=0.470 Sum_probs=15.7
Q ss_pred CCcEEEEeCcEEEEEcCC
Q 032626 14 DGVKVKINAKVIEVEGPR 31 (137)
Q Consensus 14 ~gV~Vti~~~~v~VkGp~ 31 (137)
..++|+-++.+++|+|.+
T Consensus 33 ndinvtwdgdtvtvegql 50 (62)
T 2gjh_A 33 NDINVTWDGDTVTVEGQL 50 (62)
T ss_dssp CSCEEEECSSCEEEEEEC
T ss_pred ccceeEEcCCEEEEEeEE
Confidence 467899999999999986
No 44
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Probab=23.83 E-value=38 Score=23.68 Aligned_cols=19 Identities=37% Similarity=0.663 Sum_probs=15.4
Q ss_pred CCCcEEEE-eCcEEEEEcCC
Q 032626 13 PDGVKVKI-NAKVIEVEGPR 31 (137)
Q Consensus 13 P~gV~Vti-~~~~v~VkGp~ 31 (137)
|+.++|++ +++.|+|+|.+
T Consensus 66 kedI~V~v~~~~~L~I~g~~ 85 (151)
T 1gme_A 66 KEEVKVEVEDGNVLVVSGER 85 (151)
T ss_dssp GGGEEEEEETTTEEEEEECC
T ss_pred hHHEEEEEecCCEEEEEEEE
Confidence 36899999 57899999854
No 45
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
Probab=23.35 E-value=1e+02 Score=26.79 Aligned_cols=30 Identities=10% Similarity=0.310 Sum_probs=20.6
Q ss_pred eeEcCCCcEEEEeCcEEEEEcCCcEEEEEe
Q 032626 9 TMDIPDGVKVKINAKVIEVEGPRGKLSRDF 38 (137)
Q Consensus 9 pI~IP~gV~Vti~~~~v~VkGp~G~l~~~l 38 (137)
.|.-|+||+|+++...|.++....++++.+
T Consensus 579 ~v~~p~g~~v~v~P~~l~f~~~~~~~~f~v 608 (649)
T 3i6s_A 579 KLKAPKNSTISVSPQILVFKNKNEKQSYTL 608 (649)
T ss_dssp EEECCTTEEEEEESSEEEECC-CCEEEEEE
T ss_pred EEecCCCCEEEEECCEEEEecCCCEEEEEE
Confidence 456688888888888888876655555443
No 46
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=22.37 E-value=52 Score=21.63 Aligned_cols=10 Identities=40% Similarity=0.737 Sum_probs=6.3
Q ss_pred CcEEEEEcCC
Q 032626 22 AKVIEVEGPR 31 (137)
Q Consensus 22 ~~~v~VkGp~ 31 (137)
++.|+++||.
T Consensus 67 ~~~ItI~G~~ 76 (102)
T 2ctf_A 67 EDKITLEGPT 76 (102)
T ss_dssp SCEEEEEECH
T ss_pred CCEEEEECCH
Confidence 5566666664
No 47
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=22.05 E-value=54 Score=21.45 Aligned_cols=23 Identities=26% Similarity=0.575 Sum_probs=15.6
Q ss_pred CCcEEEEeCcEEEEEcCC--cEEEE
Q 032626 14 DGVKVKINAKVIEVEGPR--GKLSR 36 (137)
Q Consensus 14 ~gV~Vti~~~~v~VkGp~--G~l~~ 36 (137)
..++|+.++.+++|+|.+ |+|+-
T Consensus 77 ndinvtfdgdtvtvegqleggsleh 101 (106)
T 1qys_A 77 NDINVTFDGDTVTVEGQLEGGSLEH 101 (106)
T ss_dssp CEEEEEEETTEEEEEEEC-------
T ss_pred cceeEEEcCCeEEEEeEEcCCcccc
Confidence 357899999999999987 45443
No 48
>2kq1_A BH0266 protein; solution NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Bacillus halodurans}
Probab=20.58 E-value=91 Score=20.67 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=9.0
Q ss_pred EEEEc-CCcEEEEEeeCCcEEEEE
Q 032626 25 IEVEG-PRGKLSRDFKHLNLDFHL 47 (137)
Q Consensus 25 v~VkG-p~G~l~~~l~~~~v~i~~ 47 (137)
+.++| |.| ++.......+.+.+
T Consensus 73 v~v~~lp~~-v~v~v~P~~V~V~i 95 (119)
T 2kq1_A 73 VEHRGFPGD-LAVTVEPRMARVQL 95 (119)
T ss_dssp CEEESSCTT-SEEEESCCEEEEEE
T ss_pred EEEecCCCC-eEEEEcCCEEEEEE
Confidence 34443 444 22444323444444
Done!