BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>032628
MWKPMNEAQLLKAKTKAAMASSSLISSSLLPTKFLTIHRQSQQLSLFNNHSSKIDTASKR
LPTFRVQAAKIPSGVDLPRVQPKFQAPFLGFTKTAEIWNSRACMIGIVFTFIVELILNKG
ILQVIGVEVGKGLDLPL

High Scoring Gene Products

Symbol, full name Information P value
OHP
AT5G02120
protein from Arabidopsis thaliana 2.5e-26
NPQ4
NONPHOTOCHEMICAL QUENCHING 4
protein from Arabidopsis thaliana 1.2e-05

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  032628
        (137 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2185193 - symbol:OHP "AT5G02120" species:3702 ...   297  2.5e-26   1
TAIR|locus:2823639 - symbol:NPQ4 "NONPHOTOCHEMICAL QUENCH...   107  1.2e-05   1


>TAIR|locus:2185193 [details] [associations]
            symbol:OHP "AT5G02120" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0009535 "chloroplast thylakoid
            membrane" evidence=IDA] [GO:0009644 "response to high light
            intensity" evidence=IEP;RCA] [GO:0009637 "response to blue light"
            evidence=RCA] [GO:0009744 "response to sucrose stimulus"
            evidence=RCA] [GO:0010114 "response to red light" evidence=RCA]
            [GO:0010155 "regulation of proton transport" evidence=RCA]
            [GO:0010207 "photosystem II assembly" evidence=RCA] [GO:0010218
            "response to far red light" evidence=RCA] EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0009644 GO:GO:0009535 EMBL:AL162508
            InterPro:IPR023329 SUPFAM:SSF103511 EMBL:AF054617 EMBL:AY062846
            EMBL:AY081584 IPI:IPI00526059 PIR:T48233 RefSeq:NP_195832.1
            UniGene:At.23559 ProteinModelPortal:O81208 SMR:O81208 STRING:O81208
            PaxDb:O81208 PRIDE:O81208 EnsemblPlants:AT5G02120.1 GeneID:831799
            KEGG:ath:AT5G02120 TAIR:At5g02120 eggNOG:NOG146316
            HOGENOM:HOG000241324 InParanoid:O81208 OMA:STHCHGR PhylomeDB:O81208
            ProtClustDB:CLSN2916752 ArrayExpress:O81208 Genevestigator:O81208
            Uniprot:O81208
        Length = 110

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 58/79 (73%), Positives = 69/79 (87%)

Query:    59 KRLPTFRVQAAKIPSGVDLPRVQPKFQAPFLGFTKTAEIWNSRACMIGIVFTFIVELILN 118
             K+ P F V+AAK+P GV +P+ QPK Q  FLGFT+TAEIWNSRACMIG++ TFIVELILN
Sbjct:    33 KQQP-FVVRAAKLPEGVIVPKAQPKSQPAFLGFTQTAEIWNSRACMIGLIGTFIVELILN 91

Query:   119 KGILQVIGVEVGKGLDLPL 137
             KGIL++IGVE+GKGLDLPL
Sbjct:    92 KGILELIGVEIGKGLDLPL 110


>TAIR|locus:2823639 [details] [associations]
            symbol:NPQ4 "NONPHOTOCHEMICAL QUENCHING 4" species:3702
            "Arabidopsis thaliana" [GO:0009507 "chloroplast" evidence=ISM;IDA]
            [GO:0009517 "PSII associated light-harvesting complex II"
            evidence=TAS] [GO:0010196 "nonphotochemical quenching"
            evidence=IMP] [GO:0016168 "chlorophyll binding" evidence=TAS]
            [GO:0051738 "xanthophyll binding" evidence=TAS] [GO:0009535
            "chloroplast thylakoid membrane" evidence=IDA] [GO:0016020
            "membrane" evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA]
            [GO:0009534 "chloroplast thylakoid" evidence=IDA] [GO:0080167
            "response to karrikin" evidence=IEP] [GO:0010027 "thylakoid
            membrane organization" evidence=IMP] [GO:0000023 "maltose metabolic
            process" evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
            [GO:0009657 "plastid organization" evidence=RCA] [GO:0010103
            "stomatal complex morphogenesis" evidence=RCA] [GO:0010207
            "photosystem II assembly" evidence=RCA] [GO:0019252 "starch
            biosynthetic process" evidence=RCA] [GO:0019344 "cysteine
            biosynthetic process" evidence=RCA] [GO:0043085 "positive
            regulation of catalytic activity" evidence=RCA] Pfam:PF00504
            GO:GO:0016021 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0080167
            GO:GO:0010027 GO:GO:0015979 GO:GO:0009523 GO:GO:0016168
            Gene3D:1.10.3460.10 InterPro:IPR022796 InterPro:IPR023329
            SUPFAM:SSF103511 EMBL:AC084807 GO:GO:0009517 GO:GO:0010196
            UniGene:At.49230 EMBL:AF134131 EMBL:AB015859 IPI:IPI00531199
            PIR:T52313 RefSeq:NP_175092.1 UniGene:At.21534 UniGene:At.27004
            PDB:2AUI PDB:2AVL PDBsum:2AUI PDBsum:2AVL ProteinModelPortal:Q9XF91
            SMR:Q9XF91 STRING:Q9XF91 PaxDb:Q9XF91 PRIDE:Q9XF91 ProMEX:Q9XF91
            EnsemblPlants:AT1G44575.1 GeneID:841033 KEGG:ath:AT1G44575
            TAIR:At1g44575 eggNOG:NOG266722 HOGENOM:HOG000238511
            InParanoid:Q9XF91 KO:K03542 OMA:LGDRGRF PhylomeDB:Q9XF91
            ProtClustDB:CLSN2692112 BioCyc:MetaCyc:AT1G44575-MONOMER
            Genevestigator:Q9XF91 GO:GO:0051738 Uniprot:Q9XF91
        Length = 265

 Score = 107 (42.7 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 25/70 (35%), Positives = 37/70 (52%)

Query:    62 PTFRVQAAKIPSGVDL-PRVQPKFQAPFLGFTKTAEIWNSRACMIGIVFTFIVELILNKG 120
             P   ++ A IP G ++   +  K Q P  GFTK  E++  R   +GI F+ I E+I  KG
Sbjct:   159 PPTGLEKAVIPPGKNVRSALGLKEQGPLFGFTKANELFVGRLAQLGIAFSLIGEIITGKG 218

Query:   121 ILQVIGVEVG 130
              L  + +E G
Sbjct:   219 ALAQLNIETG 228


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.138   0.417    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      137       114   0.00091  102 3  11 22  0.42    30
                                                     29  0.44    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  539 (57 KB)
  Total size of DFA:  114 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.56u 0.13s 11.69t   Elapsed:  00:00:00
  Total cpu time:  11.56u 0.13s 11.69t   Elapsed:  00:00:00
  Start:  Mon May 20 19:08:00 2013   End:  Mon May 20 19:08:00 2013

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