Query 032628
Match_columns 137
No_of_seqs 133 out of 630
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 03:53:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032628.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032628hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02337 putative high light i 99.5 4.7E-15 1E-19 91.5 3.6 32 91-122 1-32 (35)
2 PLN00014 light-harvesting-like 99.2 1.4E-11 3.1E-16 102.6 3.9 39 93-131 160-198 (250)
3 PLN00084 photosystem II subuni 99.1 3.1E-11 6.8E-16 97.7 3.8 42 92-133 135-177 (214)
4 PLN00170 photosystem II light- 98.7 1.9E-08 4.1E-13 84.3 5.8 68 55-122 33-125 (255)
5 PLN00048 photosystem I light h 98.7 2.7E-08 5.8E-13 83.5 6.2 31 94-124 87-117 (262)
6 PLN00101 Photosystem I light-h 98.5 2.7E-07 5.8E-12 77.2 6.0 29 94-122 93-121 (250)
7 PLN00098 light-harvesting comp 98.3 9.1E-07 2E-11 74.6 5.8 30 94-123 102-131 (267)
8 PF00504 Chloroa_b-bind: Chlor 98.3 3.5E-07 7.5E-12 69.2 2.4 28 88-115 129-156 (156)
9 PLN00097 photosystem I light h 98.3 1.6E-06 3.5E-11 72.4 6.3 29 94-122 84-112 (244)
10 PF00504 Chloroa_b-bind: Chlor 98.2 2.6E-07 5.5E-12 69.9 0.6 32 89-120 26-57 (156)
11 PLN00089 fucoxanthin-chlorophy 98.2 1.2E-06 2.5E-11 71.4 4.2 30 94-123 179-208 (209)
12 PLN00147 light-harvesting comp 98.2 1.5E-06 3.3E-11 72.8 3.8 35 94-128 202-236 (252)
13 PLN00100 light-harvesting comp 98.2 1.1E-06 2.4E-11 73.5 3.0 37 93-129 161-197 (246)
14 PLN00100 light-harvesting comp 98.1 4.8E-06 1E-10 69.7 5.1 24 94-117 75-98 (246)
15 PLN00101 Photosystem I light-h 98.0 1.8E-06 3.9E-11 72.3 1.8 36 94-129 202-237 (250)
16 PLN00099 light-harvesting comp 98.0 5.2E-06 1.1E-10 69.2 4.1 37 94-130 188-225 (243)
17 PLN00120 fucoxanthin-chlorophy 98.0 7.2E-06 1.5E-10 66.5 4.3 32 88-119 154-195 (202)
18 PLN00025 photosystem II light 98.0 4.9E-06 1.1E-10 70.1 3.2 36 94-129 208-243 (262)
19 PLN00048 photosystem I light h 97.9 6E-06 1.3E-10 69.5 3.0 34 94-127 212-245 (262)
20 PLN00097 photosystem I light h 97.9 6.4E-06 1.4E-10 68.8 3.1 35 94-128 199-233 (244)
21 PLN00098 light-harvesting comp 97.9 8E-06 1.7E-10 69.0 3.4 34 94-127 217-250 (267)
22 PLN00147 light-harvesting comp 97.9 1.8E-05 4E-10 66.3 4.6 28 94-121 85-112 (252)
23 PLN00187 photosystem II light- 97.9 1.2E-05 2.6E-10 68.5 3.5 36 94-129 237-272 (286)
24 PLN00171 photosystem light-ha 97.8 1.3E-05 2.9E-10 69.4 3.4 34 94-127 275-308 (324)
25 PLN00099 light-harvesting comp 97.8 2.9E-05 6.3E-10 64.8 4.1 24 94-117 84-107 (243)
26 PLN00171 photosystem light-ha 97.8 2.5E-05 5.3E-10 67.8 3.7 29 94-122 150-178 (324)
27 PLN00025 photosystem II light 97.7 3.2E-05 6.9E-10 65.3 4.0 28 94-121 93-120 (262)
28 PLN00187 photosystem II light- 97.5 3.9E-05 8.5E-10 65.5 1.7 29 91-119 132-160 (286)
29 PLN00170 photosystem II light- 97.4 7E-05 1.5E-09 63.1 1.7 34 93-127 222-255 (255)
30 PLN00089 fucoxanthin-chlorophy 97.0 0.00064 1.4E-08 55.5 3.4 28 93-120 76-103 (209)
31 PLN02449 ferrochelatase 96.0 0.0044 9.4E-08 56.3 2.5 32 85-124 454-485 (485)
32 PLN00120 fucoxanthin-chlorophy 95.2 0.0052 1.1E-07 49.9 -0.1 24 92-115 64-87 (202)
33 PLN02755 complex I subunit 36.6 24 0.00051 25.0 1.6 29 97-125 28-56 (71)
34 PLN00058 photosystem II reacti 36.5 57 0.0012 24.6 3.6 48 58-118 21-68 (103)
35 PF12911 OppC_N: N-terminal TM 25.9 87 0.0019 19.4 2.7 21 95-115 10-30 (56)
No 1
>PHA02337 putative high light inducible protein
Probab=99.54 E-value=4.7e-15 Score=91.45 Aligned_cols=32 Identities=31% Similarity=0.267 Sum_probs=30.6
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHhchhhh
Q 032628 91 FTKTAEIWNSRACMIGIVFTFIVELILNKGIL 122 (137)
Q Consensus 91 Ft~~AE~~NGRlAMiGfv~~l~~El~tG~giL 122 (137)
|+++||+||||+|||||++++++|++||+++-
T Consensus 1 ft~~aE~~NGRlAMiGfv~~~~~e~~tGq~ip 32 (35)
T PHA02337 1 MTPEAEIFNGWLAMIGFVAAVGAYATTGQIIP 32 (35)
T ss_pred CccHHHHHhhHHHHHHHHHHHHHHHHhCCCCC
Confidence 78999999999999999999999999999874
No 2
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=99.18 E-value=1.4e-11 Score=102.58 Aligned_cols=39 Identities=28% Similarity=0.543 Sum_probs=35.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhhhccC
Q 032628 93 KTAEIWNSRACMIGIVFTFIVELILNKGILQVIGVEVGK 131 (137)
Q Consensus 93 ~~AE~~NGRlAMiGfv~~l~~El~tG~giL~qig~~~G~ 131 (137)
+++|++|||+|||||++++++|++||+|+++|+|...|+
T Consensus 160 ~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~f~~k 198 (250)
T PLN00014 160 PEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGNFFCK 198 (250)
T ss_pred chhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhhhhhH
Confidence 469999999999999999999999999999999876653
No 3
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=99.14 E-value=3.1e-11 Score=97.73 Aligned_cols=42 Identities=26% Similarity=0.445 Sum_probs=39.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHh-chhhhhhhhhhccCCC
Q 032628 92 TKTAEIWNSRACMIGIVFTFIVELIL-NKGILQVIGVEVGKGL 133 (137)
Q Consensus 92 t~~AE~~NGRlAMiGfv~~l~~El~t-G~giL~qig~~~G~gl 133 (137)
++..|+||||+||+||+++++.|++| |+|+++|+++++|...
T Consensus 135 qK~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~~ETGvPi 177 (214)
T PLN00084 135 QKPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNGETGVPV 177 (214)
T ss_pred ccchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhccccCCcc
Confidence 45689999999999999999999999 9999999999999764
No 4
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=98.73 E-value=1.9e-08 Score=84.34 Aligned_cols=68 Identities=22% Similarity=0.204 Sum_probs=47.6
Q ss_pred cccCCCCceeEEEeecCCCCCCCCCCC-------CC----CCCCCCCCch--------------hhHHHHHHHHHHHHHH
Q 032628 55 DTASKRLPTFRVQAAKIPSGVDLPRVQ-------PK----FQAPFLGFTK--------------TAEIWNSRACMIGIVF 109 (137)
Q Consensus 55 ~~~~~r~~s~~VrA~~~p~gv~~p~~~-------p~----~~~~~~GFt~--------------~AE~~NGRlAMiGfv~ 109 (137)
.....|.++++|.++........|-.. |. ..+..+||++ .+|+.|||+||+|+++
T Consensus 33 ~~~~~~~~~~v~~~a~~~~k~w~p~~~~~~~~~~P~~l~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G 112 (255)
T PLN00170 33 AAKVGARTLLVVAAAAQPKKSWIPAVKGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVG 112 (255)
T ss_pred ccccccceeEEEEeccCCCccccCCCCCCcccCCcccccccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHh
Confidence 455666677777776655555555332 21 2234556654 5899999999999999
Q ss_pred HHHHHHHhchhhh
Q 032628 110 TFIVELILNKGIL 122 (137)
Q Consensus 110 ~l~~El~tG~giL 122 (137)
+++.|+++|...+
T Consensus 113 ~~v~e~l~g~~w~ 125 (255)
T PLN00170 113 IFVGQAWSGIPWF 125 (255)
T ss_pred hhhHHHccCCChh
Confidence 9999999987654
No 5
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=98.71 E-value=2.7e-08 Score=83.53 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhchhhhhh
Q 032628 94 TAEIWNSRACMIGIVFTFIVELILNKGILQV 124 (137)
Q Consensus 94 ~AE~~NGRlAMiGfv~~l~~El~tG~giL~q 124 (137)
++|+.|||+||+|++++++.|++++.|++.+
T Consensus 87 ~aEL~hGR~AMLa~~G~lv~Ell~~~g~~~~ 117 (262)
T PLN00048 87 YGEVINGRFAMLGAAGAIAPEILGKAGLIPQ 117 (262)
T ss_pred HHHhhcchHHHHHHhhHHHHHHhccCCcccc
Confidence 4699999999999999999999999888753
No 6
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=98.48 E-value=2.7e-07 Score=77.21 Aligned_cols=29 Identities=31% Similarity=0.499 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhchhhh
Q 032628 94 TAEIWNSRACMIGIVFTFIVELILNKGIL 122 (137)
Q Consensus 94 ~AE~~NGRlAMiGfv~~l~~El~tG~giL 122 (137)
.+|+.|||+||+|++++++.|++++.|++
T Consensus 93 ~aEl~hGRlAMla~~G~l~~e~l~~~g~~ 121 (250)
T PLN00101 93 QAELVNGRWAMLGVAGMLLPEVFTKIGII 121 (250)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhcCCCCc
Confidence 58999999999999999999999999886
No 7
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=98.33 E-value=9.1e-07 Score=74.64 Aligned_cols=30 Identities=27% Similarity=0.383 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhchhhhh
Q 032628 94 TAEIWNSRACMIGIVFTFIVELILNKGILQ 123 (137)
Q Consensus 94 ~AE~~NGRlAMiGfv~~l~~El~tG~giL~ 123 (137)
.+|+.|||+||+|++++++.|++++.|++.
T Consensus 102 ~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~ 131 (267)
T PLN00098 102 QAELMHSRWAMLAVAGILIPECLERLGFIE 131 (267)
T ss_pred HHHhhccHHHHHHHHHHHHHHHhcCCCccc
Confidence 699999999999999999999999887754
No 8
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=98.30 E-value=3.5e-07 Score=69.15 Aligned_cols=28 Identities=25% Similarity=0.178 Sum_probs=24.0
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 032628 88 FLGFTKTAEIWNSRACMIGIVFTFIVEL 115 (137)
Q Consensus 88 ~~GFt~~AE~~NGRlAMiGfv~~l~~El 115 (137)
.+.+++.+|++|||+|||||++++++|.
T Consensus 129 ~~~~~~~~El~NGRlAMla~~g~~~~e~ 156 (156)
T PF00504_consen 129 EKEFMQLAELKNGRLAMLAFAGFVAQEA 156 (156)
T ss_dssp SHHCHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456789999999999999999999873
No 9
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=98.29 E-value=1.6e-06 Score=72.39 Aligned_cols=29 Identities=28% Similarity=0.413 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhchhhh
Q 032628 94 TAEIWNSRACMIGIVFTFIVELILNKGIL 122 (137)
Q Consensus 94 ~AE~~NGRlAMiGfv~~l~~El~tG~giL 122 (137)
.+|+.|||+||+|++++++.|++++.|+.
T Consensus 84 ~aEl~hGR~AMLa~~G~lv~e~l~~~g~~ 112 (244)
T PLN00097 84 QAELMHARWAMLGLAGCVAPELLTKIGMA 112 (244)
T ss_pred HHHHhcchHHHHHHhhhhHHHHhcCCCcc
Confidence 69999999999999999999999988763
No 10
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=98.24 E-value=2.6e-07 Score=69.87 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=28.1
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHhchh
Q 032628 89 LGFTKTAEIWNSRACMIGIVFTFIVELILNKG 120 (137)
Q Consensus 89 ~GFt~~AE~~NGRlAMiGfv~~l~~El~tG~g 120 (137)
+.|...+|++|||+||+||++.++.|+.++.+
T Consensus 26 ~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~ 57 (156)
T PF00504_consen 26 FAWYREAELKHGRVAMLAFVGALVQEAGTGFP 57 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTT
T ss_pred HHHHHHhHHHhhhhhhhhhHHHHHHHHhccCC
Confidence 34567899999999999999999999998854
No 11
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=98.24 E-value=1.2e-06 Score=71.42 Aligned_cols=30 Identities=23% Similarity=0.153 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhchhhhh
Q 032628 94 TAEIWNSRACMIGIVFTFIVELILNKGILQ 123 (137)
Q Consensus 94 ~AE~~NGRlAMiGfv~~l~~El~tG~giL~ 123 (137)
.+|+.|||+||+|+.+++..|++||+|++.
T Consensus 179 ~~El~NGRlAM~a~~g~~~~~~~tg~g~~~ 208 (209)
T PLN00089 179 DKELKNGRLAMVAIGGIATGSAITGHGFPY 208 (209)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHcCCCCCc
Confidence 369999999999999999999999999863
No 12
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=98.18 E-value=1.5e-06 Score=72.78 Aligned_cols=35 Identities=20% Similarity=0.281 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhhh
Q 032628 94 TAEIWNSRACMIGIVFTFIVELILNKGILQVIGVE 128 (137)
Q Consensus 94 ~AE~~NGRlAMiGfv~~l~~El~tG~giL~qig~~ 128 (137)
..|+.|||+||+|+++++++|++||+|+++++.--
T Consensus 202 ~kEikNGRLAMlA~~G~~~q~~vtg~Gp~~nL~~h 236 (252)
T PLN00147 202 LKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLTH 236 (252)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 47999999999999999999999999999988543
No 13
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=98.17 E-value=1.1e-06 Score=73.49 Aligned_cols=37 Identities=19% Similarity=0.192 Sum_probs=33.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhhhc
Q 032628 93 KTAEIWNSRACMIGIVFTFIVELILNKGILQVIGVEV 129 (137)
Q Consensus 93 ~~AE~~NGRlAMiGfv~~l~~El~tG~giL~qig~~~ 129 (137)
+..|+.|||+||++|+++++++++||+|.+++++-..
T Consensus 161 K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPlenL~~hl 197 (246)
T PLN00100 161 KVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKAHM 197 (246)
T ss_pred HHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHhc
Confidence 3699999999999999999999999999999986543
No 14
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=98.09 E-value=4.8e-06 Score=69.74 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHh
Q 032628 94 TAEIWNSRACMIGIVFTFIVELIL 117 (137)
Q Consensus 94 ~AE~~NGRlAMiGfv~~l~~El~t 117 (137)
.+|+.|||+||+|+++.++.|+++
T Consensus 75 ~aEl~hGR~AMla~~G~~~~E~~~ 98 (246)
T PLN00100 75 EAELMNGRWAMAATAGILFTDAVG 98 (246)
T ss_pred HHHhhcchHHHHHHhhhhHHHHhc
Confidence 589999999999999999999864
No 15
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=98.05 E-value=1.8e-06 Score=72.26 Aligned_cols=36 Identities=17% Similarity=0.211 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhhhc
Q 032628 94 TAEIWNSRACMIGIVFTFIVELILNKGILQVIGVEV 129 (137)
Q Consensus 94 ~AE~~NGRlAMiGfv~~l~~El~tG~giL~qig~~~ 129 (137)
..|+.|||+||++|++.++++++||+|.++++.--.
T Consensus 202 ~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi~nL~~hl 237 (250)
T PLN00101 202 EKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHL 237 (250)
T ss_pred HHHHhhcchHHHHHhhHhheehccCCChHHHHHHHh
Confidence 589999999999999999999999999999985444
No 16
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=98.02 E-value=5.2e-06 Score=69.21 Aligned_cols=37 Identities=19% Similarity=0.248 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHH-HHhchhhhhhhhhhcc
Q 032628 94 TAEIWNSRACMIGIVFTFIVE-LILNKGILQVIGVEVG 130 (137)
Q Consensus 94 ~AE~~NGRlAMiGfv~~l~~E-l~tG~giL~qig~~~G 130 (137)
..|+.|||+|||++++.+++| +++|+|+++++.--..
T Consensus 188 ~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~~hla 225 (243)
T PLN00099 188 VKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 225 (243)
T ss_pred HHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHHHHHhc
Confidence 489999999999999999999 5789999999865443
No 17
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=98.00 E-value=7.2e-06 Score=66.49 Aligned_cols=32 Identities=22% Similarity=0.330 Sum_probs=28.5
Q ss_pred CCCCch----------hhHHHHHHHHHHHHHHHHHHHHHhch
Q 032628 88 FLGFTK----------TAEIWNSRACMIGIVFTFIVELILNK 119 (137)
Q Consensus 88 ~~GFt~----------~AE~~NGRlAMiGfv~~l~~El~tG~ 119 (137)
.+||++ .+|+.|||+||||+.++++.|+++|.
T Consensus 154 d~gfdp~~~~~~~~~~~~EL~NGRLAMiai~G~~~qe~l~g~ 195 (202)
T PLN00120 154 DFGWDSFDEETKLKKRAIELNQGRAAQMGILALMVHEQLGVE 195 (202)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 467875 47999999999999999999999996
No 18
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=97.98 E-value=4.9e-06 Score=70.10 Aligned_cols=36 Identities=25% Similarity=0.369 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhhhc
Q 032628 94 TAEIWNSRACMIGIVFTFIVELILNKGILQVIGVEV 129 (137)
Q Consensus 94 ~AE~~NGRlAMiGfv~~l~~El~tG~giL~qig~~~ 129 (137)
..|+.|||+||+++++.+++|++||+|.++++.--.
T Consensus 208 ~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL~~hl 243 (262)
T PLN00025 208 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL 243 (262)
T ss_pred HHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHHh
Confidence 689999999999999999999999999999875433
No 19
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=97.94 E-value=6e-06 Score=69.51 Aligned_cols=34 Identities=29% Similarity=0.315 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhh
Q 032628 94 TAEIWNSRACMIGIVFTFIVELILNKGILQVIGV 127 (137)
Q Consensus 94 ~AE~~NGRlAMiGfv~~l~~El~tG~giL~qig~ 127 (137)
..|+.|||+||+++++++++|++||+|.++++.-
T Consensus 212 ~~EiknGRLAM~A~~G~~~q~~~tg~gp~~~L~~ 245 (262)
T PLN00048 212 LKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLD 245 (262)
T ss_pred HHHHhhhHHHHHHhhhHhhhhhhcCCCHHHHHHH
Confidence 5899999999999999999999999999988743
No 20
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=97.94 E-value=6.4e-06 Score=68.83 Aligned_cols=35 Identities=17% Similarity=0.133 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhhh
Q 032628 94 TAEIWNSRACMIGIVFTFIVELILNKGILQVIGVE 128 (137)
Q Consensus 94 ~AE~~NGRlAMiGfv~~l~~El~tG~giL~qig~~ 128 (137)
.+|+.|||+||+++++.++++++||+|.++++.--
T Consensus 199 ~kEiknGRLAM~A~~G~~~q~~vTGkGPl~nL~~H 233 (244)
T PLN00097 199 LKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFSH 233 (244)
T ss_pred HHHHHhhHHHHHHHHHHhhhhhccCCCHHHHHHHH
Confidence 59999999999999999999999999999988543
No 21
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=97.92 E-value=8e-06 Score=69.00 Aligned_cols=34 Identities=24% Similarity=0.245 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhh
Q 032628 94 TAEIWNSRACMIGIVFTFIVELILNKGILQVIGV 127 (137)
Q Consensus 94 ~AE~~NGRlAMiGfv~~l~~El~tG~giL~qig~ 127 (137)
..|+.|||+||+++++.++++++||+|+++++.-
T Consensus 217 ~kEikNGRLAM~A~~G~~~q~~vTG~gPl~nL~~ 250 (267)
T PLN00098 217 TKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMA 250 (267)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhhcCCChHHHHHH
Confidence 4899999999999999999999999999999853
No 22
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=97.86 E-value=1.8e-05 Score=66.33 Aligned_cols=28 Identities=32% Similarity=0.463 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhchhh
Q 032628 94 TAEIWNSRACMIGIVFTFIVELILNKGI 121 (137)
Q Consensus 94 ~AE~~NGRlAMiGfv~~l~~El~tG~gi 121 (137)
.+|+.|||+||+|+++.++.|+++..|+
T Consensus 85 ~aElkhGR~AMlA~~G~l~~e~~~~~g~ 112 (252)
T PLN00147 85 QAELVHSRFAMAGVAGILFTDLLRVTGI 112 (252)
T ss_pred HHHhhccHHHHHHHhhhhHHHHhccCCC
Confidence 5899999999999999999999887664
No 23
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=97.85 E-value=1.2e-05 Score=68.55 Aligned_cols=36 Identities=22% Similarity=0.204 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhhhc
Q 032628 94 TAEIWNSRACMIGIVFTFIVELILNKGILQVIGVEV 129 (137)
Q Consensus 94 ~AE~~NGRlAMiGfv~~l~~El~tG~giL~qig~~~ 129 (137)
..|+.|||+||+++++.+++|++||+|.++++.--.
T Consensus 237 ~kEIkNGRLAMlA~lG~~vq~~vtg~GPi~nL~~Hl 272 (286)
T PLN00187 237 LAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHL 272 (286)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhcCCChHHHHHHHh
Confidence 589999999999999999999999999998875433
No 24
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=97.84 E-value=1.3e-05 Score=69.43 Aligned_cols=34 Identities=26% Similarity=0.267 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhh
Q 032628 94 TAEIWNSRACMIGIVFTFIVELILNKGILQVIGV 127 (137)
Q Consensus 94 ~AE~~NGRlAMiGfv~~l~~El~tG~giL~qig~ 127 (137)
..|+.|||+||+|+++++++|.+||+|.++++.-
T Consensus 275 ~kELkNGRLAM~A~lG~~vq~~vTG~GPlenL~~ 308 (324)
T PLN00171 275 VKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVD 308 (324)
T ss_pred HHHHhhhHHHHHHHHHHHHhHhhcCCChHHHHHH
Confidence 4699999999999999999999999999988743
No 25
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=97.76 E-value=2.9e-05 Score=64.80 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHh
Q 032628 94 TAEIWNSRACMIGIVFTFIVELIL 117 (137)
Q Consensus 94 ~AE~~NGRlAMiGfv~~l~~El~t 117 (137)
.+|+.|||+||+|+++.+++|+++
T Consensus 84 ~~ELkHGR~AMLAv~G~i~~E~l~ 107 (243)
T PLN00099 84 ESELIHCRWAMLAVPGILVPEALG 107 (243)
T ss_pred HHhccCCcHHHHHHhhHHHHHHhc
Confidence 589999999999999999999864
No 26
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=97.75 E-value=2.5e-05 Score=67.77 Aligned_cols=29 Identities=24% Similarity=0.234 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhchhhh
Q 032628 94 TAEIWNSRACMIGIVFTFIVELILNKGIL 122 (137)
Q Consensus 94 ~AE~~NGRlAMiGfv~~l~~El~tG~giL 122 (137)
.+|+.|||+||+|+++.++.|++++.|..
T Consensus 150 eaELkHGR~AMLA~~G~lv~e~l~~~g~~ 178 (324)
T PLN00171 150 NFEILHARWAMLAALGVVIPEVLDLFGAV 178 (324)
T ss_pred HHHhccchHHHHHHhhHHHHHHhccCCcc
Confidence 58999999999999999999998877654
No 27
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=97.73 E-value=3.2e-05 Score=65.26 Aligned_cols=28 Identities=25% Similarity=0.414 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhchhh
Q 032628 94 TAEIWNSRACMIGIVFTFIVELILNKGI 121 (137)
Q Consensus 94 ~AE~~NGRlAMiGfv~~l~~El~tG~gi 121 (137)
.+|+.|||+||+|++++++.|++++.|+
T Consensus 93 e~El~hGR~AMLa~~G~i~~e~l~~~g~ 120 (262)
T PLN00025 93 ELEVIHARWAMLGALGCVTPELLAKNGV 120 (262)
T ss_pred HHHHhccHHHHHHHhhhhhHHHhhcCCc
Confidence 6899999999999999999999987766
No 28
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=97.52 E-value=3.9e-05 Score=65.48 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=26.0
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHhch
Q 032628 91 FTKTAEIWNSRACMIGIVFTFIVELILNK 119 (137)
Q Consensus 91 Ft~~AE~~NGRlAMiGfv~~l~~El~tG~ 119 (137)
+...+|++|||+||+|++++++.|+++|.
T Consensus 132 r~REaELiHGRwAMLAvaG~lvpEll~G~ 160 (286)
T PLN00187 132 RFRECELIHGRWAMLATLGALSVEALTGV 160 (286)
T ss_pred HHHHHHhhhhHHHHHHhhchhhHHhccCC
Confidence 44789999999999999999999998764
No 29
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=97.40 E-value=7e-05 Score=63.08 Aligned_cols=34 Identities=26% Similarity=0.374 Sum_probs=30.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhh
Q 032628 93 KTAEIWNSRACMIGIVFTFIVELILNKGILQVIGV 127 (137)
Q Consensus 93 ~~AE~~NGRlAMiGfv~~l~~El~tG~giL~qig~ 127 (137)
+.+|+.|||+||++|++.+++. .||+|.|+.+|+
T Consensus 222 k~kEIKnGRLAMlA~lGf~~Qa-~~g~~p~~~l~~ 255 (255)
T PLN00170 222 KLAEIKHARLAMVAMLIFYFEA-GQGKTPLGALGL 255 (255)
T ss_pred HHHHHhhhHHHHHHHHhHheee-ccCCCchhhhcC
Confidence 5799999999999999977766 799999999874
No 30
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=97.00 E-value=0.00064 Score=55.54 Aligned_cols=28 Identities=18% Similarity=0.316 Sum_probs=24.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhchh
Q 032628 93 KTAEIWNSRACMIGIVFTFIVELILNKG 120 (137)
Q Consensus 93 ~~AE~~NGRlAMiGfv~~l~~El~tG~g 120 (137)
..+|+.|||+||+++++.+++|.++.-|
T Consensus 76 r~~ElkhGR~AMlA~~G~~~~~~~~~pG 103 (209)
T PLN00089 76 RESELKHGRAAMLAVAGFIAPDFVRIPG 103 (209)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHcCCC
Confidence 4799999999999999999999876443
No 31
>PLN02449 ferrochelatase
Probab=95.99 E-value=0.0044 Score=56.30 Aligned_cols=32 Identities=25% Similarity=0.381 Sum_probs=28.3
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhchhhhhh
Q 032628 85 QAPFLGFTKTAEIWNSRACMIGIVFTFIVELILNKGILQV 124 (137)
Q Consensus 85 ~~~~~GFt~~AE~~NGRlAMiGfv~~l~~El~tG~giL~q 124 (137)
..+.||++. +||+||++++.+|+++|+|.+++
T Consensus 454 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 485 (485)
T PLN02449 454 AVWEWGWTK--------AAMLAVLLLLVLEVTSGFGNLHQ 485 (485)
T ss_pred hhhhhcccc--------hHHHHHHHHHHHHHHcCCCcCCC
Confidence 447789887 99999999999999999999864
No 32
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=95.16 E-value=0.0052 Score=49.93 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=22.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHH
Q 032628 92 TKTAEIWNSRACMIGIVFTFIVEL 115 (137)
Q Consensus 92 t~~AE~~NGRlAMiGfv~~l~~El 115 (137)
...+|+.|||+||+++++.+++|+
T Consensus 64 ~r~~ElkhGRlAMlA~~G~~~~~~ 87 (202)
T PLN00120 64 LRYVEIKHGRISMLAVVGYLVTEA 87 (202)
T ss_pred HHHHHhhcccHHHHhhccceeecc
Confidence 357999999999999999999996
No 33
>PLN02755 complex I subunit
Probab=36.59 E-value=24 Score=25.03 Aligned_cols=29 Identities=24% Similarity=0.505 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhhhhhh
Q 032628 97 IWNSRACMIGIVFTFIVELILNKGILQVI 125 (137)
Q Consensus 97 ~~NGRlAMiGfv~~l~~El~tG~giL~qi 125 (137)
+|--|-|.+-|+.++++=.+.|+|++..+
T Consensus 28 RWT~Rt~~i~~ifgv~VP~liy~giv~eF 56 (71)
T PLN02755 28 RWTRRNLAVVGIFGIAVPILVYKGIVREF 56 (71)
T ss_pred ecccchhhhhhhhhhhhhHHhhhhhhhhh
Confidence 68889999999999999999999999776
No 34
>PLN00058 photosystem II reaction center subunit T; Provisional
Probab=36.47 E-value=57 Score=24.57 Aligned_cols=48 Identities=10% Similarity=-0.056 Sum_probs=28.7
Q ss_pred CCCCceeEEEeecCCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhc
Q 032628 58 SKRLPTFRVQAAKIPSGVDLPRVQPKFQAPFLGFTKTAEIWNSRACMIGIVFTFIVELILN 118 (137)
Q Consensus 58 ~~r~~s~~VrA~~~p~gv~~p~~~p~~~~~~~GFt~~AE~~NGRlAMiGfv~~l~~El~tG 118 (137)
..|++.+.|+|++..++..+. +... |--|||-.++--.++..+-.+.|
T Consensus 21 ~~rr~l~Vv~Aak~~~~e~v~------------~~~~-e~~~gRR~~mfaaaAaav~s~a~ 68 (103)
T PLN00058 21 TGGRRLSVVRASTSDNTPSLE------------VKEQ-QSTTMRRDLMFTAAAAAVCSLAK 68 (103)
T ss_pred ccCceEEEEEcccccccccee------------eccc-cchhhHHHHHHHHHHHHHHhhhH
Confidence 456667789999877754321 1222 77788877665555554444433
No 35
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=25.93 E-value=87 Score=19.38 Aligned_cols=21 Identities=19% Similarity=0.479 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 032628 95 AEIWNSRACMIGIVFTFIVEL 115 (137)
Q Consensus 95 AE~~NGRlAMiGfv~~l~~El 115 (137)
.+...-|.||+|++.+++.=+
T Consensus 10 ~~f~~nk~a~~gl~il~~~vl 30 (56)
T PF12911_consen 10 RRFRRNKLAVIGLIILLILVL 30 (56)
T ss_pred HHHHhCchHHHHHHHHHHHHH
Confidence 345567899999988766543
Done!