Query 032628
Match_columns 137
No_of_seqs 133 out of 630
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 05:43:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032628.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032628hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wsc_3 LHCA3, type II chloroph 98.7 9.3E-11 3.2E-15 97.5 -6.3 32 91-122 98-129 (276)
2 2bhw_A Chlorophyll A-B binding 98.5 7.7E-08 2.6E-12 77.9 4.4 37 93-129 177-213 (232)
3 3pl9_A Chlorophyll A-B binding 98.4 1.5E-07 5.2E-12 77.3 4.3 35 93-127 194-228 (243)
4 2wsc_2 LHCA2, type II chloroph 98.3 1.1E-07 3.8E-12 78.8 0.7 37 90-126 215-251 (269)
5 2wsc_2 LHCA2, type II chloroph 98.3 1.6E-07 5.5E-12 77.9 1.1 30 93-122 103-132 (269)
6 2wsc_3 LHCA3, type II chloroph 98.2 2.6E-07 8.8E-12 76.9 1.0 34 93-126 225-258 (276)
7 2wsc_4 Chlorophyll A-B binding 98.2 7.3E-08 2.5E-12 79.0 -2.3 34 89-122 88-121 (251)
8 2wsc_1 AT3G54890, LHCA1; photo 98.0 6.8E-07 2.3E-11 73.0 -0.1 38 92-129 187-225 (241)
9 2bhw_A Chlorophyll A-B binding 97.8 3.4E-05 1.2E-09 62.4 6.0 28 93-120 62-89 (232)
10 2wsc_4 Chlorophyll A-B binding 97.8 3.3E-06 1.1E-10 69.2 -0.2 34 93-127 201-234 (251)
11 3pl9_A Chlorophyll A-B binding 97.7 1.6E-05 5.6E-10 65.2 2.8 30 89-118 89-118 (243)
12 2wsc_1 AT3G54890, LHCA1; photo 97.6 2.6E-06 9E-11 69.6 -3.1 24 94-117 85-108 (241)
No 1
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=98.74 E-value=9.3e-11 Score=97.51 Aligned_cols=32 Identities=28% Similarity=0.428 Sum_probs=28.7
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHhchhhh
Q 032628 91 FTKTAEIWNSRACMIGIVFTFIVELILNKGIL 122 (137)
Q Consensus 91 Ft~~AE~~NGRlAMiGfv~~l~~El~tG~giL 122 (137)
|..++|++|||+||+|+++.++.|++++.|++
T Consensus 98 ~~r~aEl~hGR~AMLa~~G~l~~E~~~~~g~~ 129 (276)
T 2wsc_3 98 WLAYGEIINGRYAMLGAVGAIAPEILGKAGLI 129 (276)
T ss_dssp HHHHHHHHHHTTSCCTTTSTTSCSSCSSCCCC
T ss_pred HHHHHHhhcccchhhhHHHHHHHHHhcccccc
Confidence 34569999999999999999999999988876
No 2
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=98.50 E-value=7.7e-08 Score=77.87 Aligned_cols=37 Identities=24% Similarity=0.377 Sum_probs=33.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhhhc
Q 032628 93 KTAEIWNSRACMIGIVFTFIVELILNKGILQVIGVEV 129 (137)
Q Consensus 93 ~~AE~~NGRlAMiGfv~~l~~El~tG~giL~qig~~~ 129 (137)
..+|++|||+||+||+++++.|++||+|+++++.--.
T Consensus 177 ~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~~~~ 213 (232)
T 2bhw_A 177 KVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL 213 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHH
T ss_pred HHhhhhccchHHHHHHHHHHHHHhcCCChHHHHHHHh
Confidence 4689999999999999999999999999999886443
No 3
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=98.42 E-value=1.5e-07 Score=77.27 Aligned_cols=35 Identities=26% Similarity=0.262 Sum_probs=32.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhh
Q 032628 93 KTAEIWNSRACMIGIVFTFIVELILNKGILQVIGV 127 (137)
Q Consensus 93 ~~AE~~NGRlAMiGfv~~l~~El~tG~giL~qig~ 127 (137)
..+|++|||+||+||++.+++|++||+|+++++.-
T Consensus 194 r~~ElknGRlAMla~~g~~~q~~vtG~Gpl~~l~~ 228 (243)
T 3pl9_A 194 QLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWVT 228 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 47999999999999999999999999999998853
No 4
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=98.29 E-value=1.1e-07 Score=78.82 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=33.6
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHhchhhhhhhh
Q 032628 90 GFTKTAEIWNSRACMIGIVFTFIVELILNKGILQVIG 126 (137)
Q Consensus 90 GFt~~AE~~NGRlAMiGfv~~l~~El~tG~giL~qig 126 (137)
.....+|++|||+||+||+++++.|++||+|+++++.
T Consensus 215 ~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~~l~ 251 (269)
T 2wsc_2 215 KELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLF 251 (269)
T ss_dssp TTSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSSCCCS
T ss_pred HHHHHhhcccchHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 3456799999999999999999999999999998875
No 5
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=98.27 E-value=1.6e-07 Score=77.85 Aligned_cols=30 Identities=40% Similarity=0.515 Sum_probs=27.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhchhhh
Q 032628 93 KTAEIWNSRACMIGIVFTFIVELILNKGIL 122 (137)
Q Consensus 93 ~~AE~~NGRlAMiGfv~~l~~El~tG~giL 122 (137)
.++|+.|||+||+|+++.++.|++++.|++
T Consensus 103 r~aElkHGR~AMLA~~G~l~~E~l~~~G~~ 132 (269)
T 2wsc_2 103 VQAELVHSRWAMLGAAGIFIPEFLTKLGIL 132 (269)
T ss_dssp HHHHHHTHHHHTTTTHHHHHHHHHCCTTSS
T ss_pred HHHHHhcchHHHHHHHHhHhHHhhccCCcc
Confidence 479999999999999999999999877654
No 6
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=98.21 E-value=2.6e-07 Score=76.85 Aligned_cols=34 Identities=29% Similarity=0.346 Sum_probs=30.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhchhhhhhhh
Q 032628 93 KTAEIWNSRACMIGIVFTFIVELILNKGILQVIG 126 (137)
Q Consensus 93 ~~AE~~NGRlAMiGfv~~l~~El~tG~giL~qig 126 (137)
..+|++|||+||+||+++++.|++||+|+++++.
T Consensus 225 r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~~l~ 258 (276)
T 2wsc_3 225 KLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLL 258 (276)
T ss_dssp CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSCC--
T ss_pred HHhhhcccchHHHHHHHHHHHHHhcCCChHHHHH
Confidence 5789999999999999999999999999998875
No 7
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=98.20 E-value=7.3e-08 Score=79.01 Aligned_cols=34 Identities=29% Similarity=0.453 Sum_probs=30.2
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHhchhhh
Q 032628 89 LGFTKTAEIWNSRACMIGIVFTFIVELILNKGIL 122 (137)
Q Consensus 89 ~GFt~~AE~~NGRlAMiGfv~~l~~El~tG~giL 122 (137)
+.|...+|++|||+||+|+++.++.|++++.|++
T Consensus 88 ~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~ 121 (251)
T 2wsc_4 88 LRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII 121 (251)
T ss_dssp TTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSS
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcc
Confidence 3445689999999999999999999999998876
No 8
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=98.02 E-value=6.8e-07 Score=73.04 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=33.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHH-HHhchhhhhhhhhhc
Q 032628 92 TKTAEIWNSRACMIGIVFTFIVE-LILNKGILQVIGVEV 129 (137)
Q Consensus 92 t~~AE~~NGRlAMiGfv~~l~~E-l~tG~giL~qig~~~ 129 (137)
-..+|++|||+||+||++.++.| ++||+|++++++.-.
T Consensus 187 ~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~~h~ 225 (241)
T 2wsc_1 187 LKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL 225 (241)
T ss_dssp SCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSSCSC
T ss_pred HHHhhcccccHHHHHHHHHHHhhhhcCCCchHHHHHHHh
Confidence 35799999999999999999999 589999999886443
No 9
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=97.78 E-value=3.4e-05 Score=62.37 Aligned_cols=28 Identities=29% Similarity=0.449 Sum_probs=24.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhchh
Q 032628 93 KTAEIWNSRACMIGIVFTFIVELILNKG 120 (137)
Q Consensus 93 ~~AE~~NGRlAMiGfv~~l~~El~tG~g 120 (137)
.++|+.|||+||+|+++.++.|+++..|
T Consensus 62 ReaELkHGR~AMLA~~G~lv~E~l~~~G 89 (232)
T 2bhw_A 62 RELEVIHSRWAMLGALGSVFPELLSRNG 89 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHhccchHHHhhhhhhhHHHhccCC
Confidence 3799999999999999999999976443
No 10
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=97.76 E-value=3.3e-06 Score=69.18 Aligned_cols=34 Identities=26% Similarity=0.250 Sum_probs=31.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhh
Q 032628 93 KTAEIWNSRACMIGIVFTFIVELILNKGILQVIGV 127 (137)
Q Consensus 93 ~~AE~~NGRlAMiGfv~~l~~El~tG~giL~qig~ 127 (137)
+..|+.|||+ ||||++++++|++||+|+++++.-
T Consensus 201 k~kELkNGRL-MlAilGf~vQe~vTG~gPl~nL~~ 234 (251)
T 2wsc_4 201 KEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQ 234 (251)
T ss_dssp TTHHHHHHHT-TTTHHHHHHHHTTSCCCCCCCTTT
T ss_pred HHHHHhcchh-HHHHHHHHHHHHhcCccHHHHHHH
Confidence 4789999999 999999999999999999988753
No 11
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=97.69 E-value=1.6e-05 Score=65.24 Aligned_cols=30 Identities=20% Similarity=0.208 Sum_probs=26.6
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHhc
Q 032628 89 LGFTKTAEIWNSRACMIGIVFTFIVELILN 118 (137)
Q Consensus 89 ~GFt~~AE~~NGRlAMiGfv~~l~~El~tG 118 (137)
+.+..++|++|||+||+|+++.++.|+.+|
T Consensus 89 l~r~ReaELkHGRwAMLAvlG~lvpE~l~g 118 (243)
T 3pl9_A 89 LQRFRECELIHGRWAMLATLGALTVEGLTG 118 (243)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHhhhhcchhHHHHHHHHHhHHhhcC
Confidence 345578999999999999999999999876
No 12
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=97.60 E-value=2.6e-06 Score=69.55 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHh
Q 032628 94 TAEIWNSRACMIGIVFTFIVELIL 117 (137)
Q Consensus 94 ~AE~~NGRlAMiGfv~~l~~El~t 117 (137)
.+|+.|||+||+++++.++.|+++
T Consensus 85 ~~El~hgR~AMla~~G~~~~e~~~ 108 (241)
T 2wsc_1 85 ESELIHCRWAMLAVPGILVPEALG 108 (241)
T ss_dssp HHHHHHHHHHTTTSTTSSSTTCCC
T ss_pred HHHHhhchhHHhhhhcccchhhcc
Confidence 699999999999999999999753
Done!